Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene071824.t1 | KEH18868.1 | 98.2 | 334 | 6 | 0 | 1 | 334 | 1 | 334 | 1.80E-183 | 651.7 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene071824.t1 | Q9M2D2 | 68.5 | 330 | 103 | 1 | 1 | 330 | 78 | 406 | 1.6e-127 | 457.2 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene071824.t1 | A0A072TPY9 | 98.2 | 334 | 6 | 0 | 1 | 334 | 1 | 334 | 1.3e-183 | 651.7 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene056633 | MS.gene071824 | 0.805559 | 1.26E-49 | -1.69E-46 |
MS.gene056775 | MS.gene071824 | 0.803151 | 4.00E-49 | -1.69E-46 |
MS.gene059512 | MS.gene071824 | 0.816736 | 4.74E-52 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene071824.t1 | MTR_8g031000 | 98.204 | 334 | 6 | 0 | 1 | 334 | 1 | 334 | 0.0 | 676 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene071824.t1 | AT3G61320 | 68.485 | 330 | 103 | 1 | 1 | 330 | 78 | 406 | 4.27e-162 | 459 |
MS.gene071824.t1 | AT3G61320 | 68.485 | 330 | 103 | 1 | 1 | 330 | 139 | 467 | 4.24e-161 | 459 |
MS.gene071824.t1 | AT2G45870 | 63.772 | 334 | 120 | 1 | 1 | 334 | 78 | 410 | 9.89e-152 | 432 |
MS.gene071824.t1 | AT3G61320 | 71.480 | 277 | 78 | 1 | 1 | 277 | 78 | 353 | 3.45e-139 | 399 |
MS.gene071824.t1 | AT2G45870 | 67.870 | 277 | 88 | 1 | 1 | 277 | 78 | 353 | 6.23e-132 | 380 |
MS.gene071824.t1 | AT3G61320 | 66.184 | 207 | 69 | 1 | 1 | 207 | 139 | 344 | 3.14e-88 | 269 |
MS.gene071824.t1 | AT2G45870 | 62.201 | 209 | 78 | 1 | 1 | 209 | 78 | 285 | 1.07e-82 | 253 |
Find 69 sgRNAs with CRISPR-Local
Find 251 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGGCTTATGTGAACAGCTTC+TGG | 0.202848 | 8.3:+64362909 | MS.gene071824:CDS |
GAGCATTCGGCTACTAAAAT+TGG | 0.278019 | 8.3:+64362628 | MS.gene071824:CDS |
CACTCTACAACCACACAAAC+TGG | 0.292794 | 8.3:+64360359 | MS.gene071824:CDS |
CCTATACTCGTCTGACTTCA+AGG | 0.305970 | 8.3:+64362950 | MS.gene071824:CDS |
TCCTGCTCTTGCGTTGCTAT+TGG | 0.308883 | 8.3:+64360588 | MS.gene071824:CDS |
ACTTGTTTCCATGATGGAAT+TGG | 0.348735 | 8.3:+64362889 | MS.gene071824:CDS |
CAATCATCCCAAAGTATGAT+AGG | 0.352692 | 8.3:-64363000 | None:intergenic |
CAAAGAGGCAGCACTAATAA+AGG | 0.355218 | 8.3:-64363046 | None:intergenic |
TACTTTGGGATGATTGTCAT+TGG | 0.371618 | 8.3:+64363007 | MS.gene071824:CDS |
CTTCAAGGTTTCTTGTCCTA+TGG | 0.395817 | 8.3:+64362965 | MS.gene071824:CDS |
CGTCTGGTTCCATTACTTGC+CGG | 0.396905 | 8.3:+64360516 | MS.gene071824:CDS |
GACGCTCCCTATCATACTTT+GGG | 0.402973 | 8.3:+64362993 | MS.gene071824:CDS |
AACAATACCTTAAGAACAAT+AGG | 0.408673 | 8.3:-64360781 | None:intergenic |
TGACGCTCCCTATCATACTT+TGG | 0.409664 | 8.3:+64362992 | MS.gene071824:CDS |
GAACCAGACGGCGGAGTTGT+AGG | 0.427709 | 8.3:-64360503 | None:intergenic |
GGCTTATGTGAACAGCTTCT+GGG | 0.429998 | 8.3:+64362910 | MS.gene071824:CDS |
AGTTTATATCGCAGAGCATT+CGG | 0.432821 | 8.3:+64362615 | MS.gene071824:CDS |
GCAGGAGCAGTAAGCTGATA+AGG | 0.432959 | 8.3:-64360571 | None:intergenic |
AAAGAAGTGAAGAAGAGAAC+AGG | 0.435786 | 8.3:-64360463 | None:intergenic |
CCTTGAAGTCAGACGAGTAT+AGG | 0.438765 | 8.3:-64362950 | None:intergenic |
AAAGAGAAACTACCACTCTA+AGG | 0.438983 | 8.3:+64364010 | MS.gene071824:CDS |
TTAAGTGCAAGCATTGGAAA+TGG | 0.446400 | 8.3:-64363909 | None:intergenic |
TTCTCTTCCATTTAGGAGCT+AGG | 0.463417 | 8.3:-64364053 | None:intergenic |
TAGGAGCTAGGCCAGCCATT+TGG | 0.465948 | 8.3:-64364041 | None:intergenic |
CCGCCTACAACTCCGCCGTC+TGG | 0.465961 | 8.3:+64360500 | MS.gene071824:CDS |
AGCGAAGAAGCTCGTAGCAC+AGG | 0.467896 | 8.3:-64360547 | None:intergenic |
ACTGTTGATGTCAGTGGGAA+GGG | 0.479910 | 8.3:+64360712 | MS.gene071824:CDS |
AAGATCACTTGTTTCCATGA+TGG | 0.486583 | 8.3:+64362883 | MS.gene071824:CDS |
ATGCAGTGTCATGTGTTGTA+TGG | 0.487229 | 8.3:+64362500 | MS.gene071824:intron |
ACCAATAGCAACGCAAGAGC+AGG | 0.492418 | 8.3:-64360589 | None:intergenic |
TTGTTGAAGGGAAGAAAGCT+TGG | 0.502301 | 8.3:+64360641 | MS.gene071824:CDS |
TCTAAGGAGCATTCACCAAA+TGG | 0.503162 | 8.3:+64364026 | MS.gene071824:CDS |
TCTTATGCTAGATTTGTTGA+AGG | 0.508587 | 8.3:+64360628 | MS.gene071824:CDS |
CATTCGGCTACTAAAATTGG+AGG | 0.521365 | 8.3:+64362631 | MS.gene071824:CDS |
CGAGTATAGGATAACGGAAT+CGG | 0.521717 | 8.3:-64362937 | None:intergenic |
TACTGTTGATGTCAGTGGGA+AGG | 0.531531 | 8.3:+64360711 | MS.gene071824:CDS |
GGATTCTAGAAGAAGCATCT+TGG | 0.535842 | 8.3:+64362652 | MS.gene071824:CDS |
GTAGGTTGGAGTTCTTATAG+AGG | 0.537255 | 8.3:+64363884 | MS.gene071824:intron |
GTCAGACGAGTATAGGATAA+CGG | 0.543591 | 8.3:-64362943 | None:intergenic |
GCACGTGACGGAGGGAGGAA+CGG | 0.547211 | 8.3:-64360390 | None:intergenic |
AGGAGCATTCACCAAATGGC+TGG | 0.548531 | 8.3:+64364030 | MS.gene071824:CDS |
GCAGCACTAATAAAGGTAGC+AGG | 0.552305 | 8.3:-64363039 | None:intergenic |
CTTATGCTAGATTTGTTGAA+GGG | 0.552693 | 8.3:+64360629 | MS.gene071824:CDS |
GGTAGTTTCTCTTTGCAACA+AGG | 0.553972 | 8.3:-64364001 | None:intergenic |
GGAGTTGTAGGCGGCGATGA+CGG | 0.556970 | 8.3:-64360491 | None:intergenic |
CACATAAGCCAATTCCATCA+TGG | 0.557282 | 8.3:-64362897 | None:intergenic |
AAAGTGACGCACGTGACGGA+GGG | 0.559488 | 8.3:-64360398 | None:intergenic |
GAAGTGAAGAAGAGAACAGG+AGG | 0.569132 | 8.3:-64360460 | None:intergenic |
AGATCATTAAGTGCAAGCAT+TGG | 0.571323 | 8.3:-64363915 | None:intergenic |
AATCATCCCAAAGTATGATA+GGG | 0.572755 | 8.3:-64362999 | None:intergenic |
TGGCTACTGTTGATGTCAGT+GGG | 0.573291 | 8.3:+64360707 | MS.gene071824:CDS |
TTGGTGAATGCTCCTTAGAG+TGG | 0.590410 | 8.3:-64364022 | None:intergenic |
ACTCTACAACCACACAAACT+GGG | 0.602994 | 8.3:+64360360 | MS.gene071824:CDS |
GTGACGCACGTGACGGAGGG+AGG | 0.608794 | 8.3:-64360395 | None:intergenic |
AAAAGTGACGCACGTGACGG+AGG | 0.611743 | 8.3:-64360399 | None:intergenic |
ATGGCTACTGTTGATGTCAG+TGG | 0.612427 | 8.3:+64360706 | MS.gene071824:CDS |
ACTTAATGATCTCTGCCAGA+AGG | 0.623032 | 8.3:+64363926 | MS.gene071824:CDS |
TAGGGAGCGTCAGATGCCAT+AGG | 0.631394 | 8.3:-64362981 | None:intergenic |
GTTGATGTCAGTGGGAAGGG+TGG | 0.633881 | 8.3:+64360715 | MS.gene071824:CDS |
TTCTTCAATGCAGAACAAAG+AGG | 0.637682 | 8.3:-64363061 | None:intergenic |
GTTGTAGGCGGCGATGACGG+CGG | 0.641211 | 8.3:-64360488 | None:intergenic |
GGTGTGTGACCCAGTTTGTG+TGG | 0.646028 | 8.3:-64360369 | None:intergenic |
GAACAGGAGGGACTAAAGAG+AGG | 0.649071 | 8.3:-64360447 | None:intergenic |
CCAGACGGCGGAGTTGTAGG+CGG | 0.663842 | 8.3:-64360500 | None:intergenic |
AAGTGAAGAAGAGAACAGGA+GGG | 0.692777 | 8.3:-64360459 | None:intergenic |
TAAAGAGAGGATGACACGCG+AGG | 0.698885 | 8.3:-64360434 | None:intergenic |
CAAGTAATGGAACCAGACGG+CGG | 0.715460 | 8.3:-64360512 | None:intergenic |
CGGCAAGTAATGGAACCAGA+CGG | 0.716242 | 8.3:-64360515 | None:intergenic |
ATAAACTCAATAATGCAGCG+AGG | 0.783535 | 8.3:-64362599 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAAGAAAAAAAAGAAAAAAA+AGG | - | chr8.3:64362234-64362253 | None:intergenic | 10.0% |
!! | AAGAAAAAAAAGAAAAAAAA+GGG | - | chr8.3:64362233-64362252 | None:intergenic | 10.0% |
!!! | AATAGGTTAAAAAATATTTT+TGG | + | chr8.3:64363371-64363390 | MS.gene071824:intron | 10.0% |
!!! | CAAAAATCAATTTTTTTTTA+TGG | - | chr8.3:64361931-64361950 | None:intergenic | 10.0% |
!! | AATAAAACACTAATAAATGT+TGG | - | chr8.3:64363196-64363215 | None:intergenic | 15.0% |
!! | ATATATAAGTAATTGATTGA+TGG | + | chr8.3:64363793-64363812 | MS.gene071824:intron | 15.0% |
!!! | ATAATCCATGTTTTAATTTA+TGG | + | chr8.3:64361334-64361353 | MS.gene071824:intron | 15.0% |
!!! | GTTTTTTTTTGAGTTTTTTT+GGG | + | chr8.3:64362284-64362303 | MS.gene071824:intron | 15.0% |
!!! | TTTAACCTATTTTATATGTA+AGG | - | chr8.3:64363362-64363381 | None:intergenic | 15.0% |
!!! | TTTTTTTAGTTGTAATTGAT+GGG | + | chr8.3:64362451-64362470 | MS.gene071824:intron | 15.0% |
!! | AAAAACTCAAAAAAAAACCT+TGG | - | chr8.3:64362282-64362301 | None:intergenic | 20.0% |
!! | AAATAAGTTCTATGTTTGTT+GGG | + | chr8.3:64362102-64362121 | MS.gene071824:intron | 20.0% |
!! | AAATATAACACTTATTCTTC+TGG | - | chr8.3:64363646-64363665 | None:intergenic | 20.0% |
!! | AAATGTTGTACATATTACAT+GGG | + | chr8.3:64363578-64363597 | MS.gene071824:intron | 20.0% |
!! | CAAAACTACATAATGAATTT+AGG | + | chr8.3:64362700-64362719 | MS.gene071824:intron | 20.0% |
!! | CAACATTAACAAATATTTCA+GGG | + | chr8.3:64363608-64363627 | MS.gene071824:intron | 20.0% |
!! | GAATAAGTGTTATATTTACA+AGG | + | chr8.3:64363649-64363668 | MS.gene071824:intron | 20.0% |
!! | TTATAACATACTATTGTGTT+TGG | - | chr8.3:64361174-64361193 | None:intergenic | 20.0% |
!! | TTGATATATTGAAATAGTCT+AGG | - | chr8.3:64363111-64363130 | None:intergenic | 20.0% |
!! | TTTCACTGATAAAATAGATT+TGG | + | chr8.3:64363742-64363761 | MS.gene071824:intron | 20.0% |
!!! | AACACATAAATTTACGTTTT+TGG | - | chr8.3:64362755-64362774 | None:intergenic | 20.0% |
!!! | AAGTTTTAAAGTGATATGTA+GGG | - | chr8.3:64363398-64363417 | None:intergenic | 20.0% |
!!! | ACTTAAATTTTTTCACCTAA+TGG | - | chr8.3:64363233-64363252 | None:intergenic | 20.0% |
!!! | ATATTGTTTGAGTTTAGATT+TGG | - | chr8.3:64363777-64363796 | None:intergenic | 20.0% |
!!! | ATTCCATTTATTTTATTTCG+AGG | + | chr8.3:64361700-64361719 | MS.gene071824:intron | 20.0% |
!!! | CTTTTTTTAGTTGTAATTGA+TGG | + | chr8.3:64362450-64362469 | MS.gene071824:intron | 20.0% |
!!! | GGTTTTTTTTTGAGTTTTTT+TGG | + | chr8.3:64362283-64362302 | MS.gene071824:intron | 20.0% |
!!! | TAAGTTTTAAAGTGATATGT+AGG | - | chr8.3:64363399-64363418 | None:intergenic | 20.0% |
!!! | TCATAAATATTTTTTGTCAG+AGG | + | chr8.3:64360849-64360868 | MS.gene071824:intron | 20.0% |
!!! | TTGATTTTTGTATGCTAATT+TGG | + | chr8.3:64361941-64361960 | MS.gene071824:intron | 20.0% |
! | AACAATACCTTAAGAACAAT+AGG | - | chr8.3:64360784-64360803 | None:intergenic | 25.0% |
! | ACAAACAAATGTTGAAAGAT+AGG | + | chr8.3:64363255-64363274 | MS.gene071824:intron | 25.0% |
! | ACTTACAACTAATGTAATAC+TGG | - | chr8.3:64360948-64360967 | None:intergenic | 25.0% |
! | AGCAACCATAAATTAAAACA+TGG | - | chr8.3:64361342-64361361 | None:intergenic | 25.0% |
! | AGTCTATAGTTACAACAATT+TGG | - | chr8.3:64361465-64361484 | None:intergenic | 25.0% |
! | ATGAAAGCTATCTGAAAAAT+GGG | + | chr8.3:64363848-64363867 | MS.gene071824:intron | 25.0% |
! | CAAATAAGTTCTATGTTTGT+TGG | + | chr8.3:64362101-64362120 | MS.gene071824:intron | 25.0% |
! | CAAATGTTGTACATATTACA+TGG | + | chr8.3:64363577-64363596 | MS.gene071824:intron | 25.0% |
! | CAATAGTATGTTATAAGCTA+TGG | + | chr8.3:64361178-64361197 | MS.gene071824:intron | 25.0% |
! | CATCCTCGAAATAAAATAAA+TGG | - | chr8.3:64361706-64361725 | None:intergenic | 25.0% |
! | CCAACATTAACAAATATTTC+AGG | + | chr8.3:64363607-64363626 | MS.gene071824:intron | 25.0% |
! | CTAAGTACAAGATAATTCAA+TGG | + | chr8.3:64361669-64361688 | MS.gene071824:intron | 25.0% |
! | CTGCATTCAAATTATTCAAA+TGG | - | chr8.3:64362486-64362505 | None:intergenic | 25.0% |
! | TAAAACAAAACAAGGACTAA+AGG | - | chr8.3:64363460-64363479 | None:intergenic | 25.0% |
! | TATAAAAGACTTAGATTTCG+TGG | + | chr8.3:64361438-64361457 | MS.gene071824:intron | 25.0% |
! | TCTGTCCTTACATATAAAAT+AGG | + | chr8.3:64363354-64363373 | MS.gene071824:intron | 25.0% |
! | TGTGAATTGTTAGTTATTTG+AGG | + | chr8.3:64361563-64361582 | MS.gene071824:intron | 25.0% |
! | TTAAGGTAAGAATTGTTTGA+TGG | + | chr8.3:64361894-64361913 | MS.gene071824:intron | 25.0% |
! | TTGAATGTAAACACATAAGT+TGG | + | chr8.3:64361106-64361125 | MS.gene071824:intron | 25.0% |
! | TTTATTCTGCATTATCCATT+AGG | + | chr8.3:64363215-64363234 | MS.gene071824:intron | 25.0% |
!! | AATAGTCTAGGATTTAAGTA+AGG | - | chr8.3:64363099-64363118 | None:intergenic | 25.0% |
!! | CCTGAAATATTTGTTAATGT+TGG | - | chr8.3:64363610-64363629 | None:intergenic | 25.0% |
!! | TATCTGGTATTCTTCAATTT+TGG | + | chr8.3:64361596-64361615 | MS.gene071824:intron | 25.0% |
!! | TTCAAACATTTTCCTAATTG+TGG | + | chr8.3:64362849-64362868 | MS.gene071824:intron | 25.0% |
!! | TTTTTGTATGCTAATTTGGA+AGG | + | chr8.3:64361945-64361964 | MS.gene071824:intron | 25.0% |
!!! | CGCTTATGTTTTATTATTAC+AGG | - | chr8.3:64361085-64361104 | None:intergenic | 25.0% |
!!! | TGTTGAAATTGTTTTGTTCT+GGG | + | chr8.3:64361855-64361874 | MS.gene071824:intron | 25.0% |
!!! | TTTTTTGAGTTTTTTTGGGT+TGG | + | chr8.3:64362288-64362307 | MS.gene071824:intron | 25.0% |
AAATTTGACGATGTTGGAAT+TGG | + | chr8.3:64363489-64363508 | MS.gene071824:intron | 30.0% | |
AATCATCCCAAAGTATGATA+GGG | - | chr8.3:64363002-64363021 | None:intergenic | 30.0% | |
ACAGAGACTAAAACAAAACA+AGG | - | chr8.3:64363468-64363487 | None:intergenic | 30.0% | |
AGAATAGTTCCATGTTTGAT+CGG | + | chr8.3:64362348-64362367 | MS.gene071824:intron | 30.0% | |
AGTACAAGATAATTCAATGG+TGG | + | chr8.3:64361672-64361691 | MS.gene071824:intron | 30.0% | |
ATGGGAAAAATGATTGATGT+AGG | + | chr8.3:64363866-64363885 | MS.gene071824:intron | 30.0% | |
CGTAAATTTATGTGTTTCCT+TGG | + | chr8.3:64362759-64362778 | MS.gene071824:intron | 30.0% | |
GAAAAATGATTGATGTAGGT+TGG | + | chr8.3:64363870-64363889 | MS.gene071824:intron | 30.0% | |
GAGTATTACACACATATTGT+AGG | - | chr8.3:64363517-64363536 | None:intergenic | 30.0% | |
GATGAAAGCTATCTGAAAAA+TGG | + | chr8.3:64363847-64363866 | MS.gene071824:intron | 30.0% | |
TAAAATGCAACTCTGATTTC+TGG | + | chr8.3:64363821-64363840 | MS.gene071824:intron | 30.0% | |
TCTGTAAAATTTGACGATGT+TGG | + | chr8.3:64363483-64363502 | MS.gene071824:intron | 30.0% | |
TGGAACTATTCTGAACAAAA+TGG | - | chr8.3:64362340-64362359 | None:intergenic | 30.0% | |
TTAACTGAACCAAGAACTTT+AGG | + | chr8.3:64363165-64363184 | MS.gene071824:intron | 30.0% | |
TTGAGGACAAAATAGTTATC+TGG | + | chr8.3:64361580-64361599 | MS.gene071824:intron | 30.0% | |
TTGGAATAACCTAAAGTTCT+TGG | - | chr8.3:64363177-64363196 | None:intergenic | 30.0% | |
! | AAGAATTGTTTGATGGTTGT+TGG | + | chr8.3:64361901-64361920 | MS.gene071824:intron | 30.0% |
! | AATCACATTTTCGGTTGTAA+TGG | - | chr8.3:64363973-64363992 | None:intergenic | 30.0% |
! | ATAGAGTGTTTAAACTGTTG+AGG | + | chr8.3:64361630-64361649 | MS.gene071824:intron | 30.0% |
! | ATTTCGAGGATGATTTTGAA+GGG | + | chr8.3:64361714-64361733 | MS.gene071824:intron | 30.0% |
! | TAGAGTGTTTAAACTGTTGA+GGG | + | chr8.3:64361631-64361650 | MS.gene071824:intron | 30.0% |
! | TATGTGTTTCCTTGGTAATT+AGG | + | chr8.3:64362767-64362786 | MS.gene071824:intron | 30.0% |
! | TATTTCGAGGATGATTTTGA+AGG | + | chr8.3:64361713-64361732 | MS.gene071824:intron | 30.0% |
! | TGCTTTTCCTATTGTTCTTA+AGG | + | chr8.3:64360774-64360793 | MS.gene071824:CDS | 30.0% |
!! | ATGAAAGAGCTGTGTTATTT+AGG | + | chr8.3:64363693-64363712 | MS.gene071824:intron | 30.0% |
!! | CTTATGCTAGATTTGTTGAA+GGG | + | chr8.3:64360629-64360648 | MS.gene071824:CDS | 30.0% |
!! | GTGTTGAAATTGTTTTGTTC+TGG | + | chr8.3:64361854-64361873 | MS.gene071824:intron | 30.0% |
!! | TAATTTGGAAGGTGTTTGTT+AGG | + | chr8.3:64361956-64361975 | MS.gene071824:intron | 30.0% |
!! | TCTTATGCTAGATTTGTTGA+AGG | + | chr8.3:64360628-64360647 | MS.gene071824:CDS | 30.0% |
!! | TGAAAGAGCTGTGTTATTTA+GGG | + | chr8.3:64363694-64363713 | MS.gene071824:intron | 30.0% |
!!! | TGATTTTGCTAGACTTGTTA+TGG | + | chr8.3:64360687-64360706 | MS.gene071824:CDS | 30.0% |
AAAGAAGTGAAGAAGAGAAC+AGG | - | chr8.3:64360466-64360485 | None:intergenic | 35.0% | |
AAAGAGAAACTACCACTCTA+AGG | + | chr8.3:64364010-64364029 | MS.gene071824:CDS | 35.0% | |
AAAGGTGACTGTGATATACA+AGG | - | chr8.3:64361382-64361401 | None:intergenic | 35.0% | |
AAGATCACTTGTTTCCATGA+TGG | + | chr8.3:64362883-64362902 | MS.gene071824:CDS | 35.0% | |
ACCAAGAAGTTAATTCAACC+TGG | + | chr8.3:64361532-64361551 | MS.gene071824:intron | 35.0% | |
ACTTAATCCCAATCGCATTA+CGG | + | chr8.3:64361406-64361425 | MS.gene071824:intron | 35.0% | |
AGACTAAGTTCCATGTTTGT+TGG | + | chr8.3:64362203-64362222 | MS.gene071824:intron | 35.0% | |
AGATCATTAAGTGCAAGCAT+TGG | - | chr8.3:64363918-64363937 | None:intergenic | 35.0% | |
ATAAACTCAATAATGCAGCG+AGG | - | chr8.3:64362602-64362621 | None:intergenic | 35.0% | |
ATATGTAGGCAATGGGAAAA+TGG | + | chr8.3:64361220-64361239 | MS.gene071824:intron | 35.0% | |
CAATCATCCCAAAGTATGAT+AGG | - | chr8.3:64363003-64363022 | None:intergenic | 35.0% | |
CCAAGAAGTTAATTCAACCT+GGG | + | chr8.3:64361533-64361552 | MS.gene071824:intron | 35.0% | |
CTATGTCTTAGTGTTATGTC+TGG | - | chr8.3:64360922-64360941 | None:intergenic | 35.0% | |
CTTTCTCAATGATACAGTCA+AGG | + | chr8.3:64362250-64362269 | MS.gene071824:intron | 35.0% | |
GAATAGTTCCATGTTTGATC+GGG | + | chr8.3:64362349-64362368 | MS.gene071824:intron | 35.0% | |
GACTAAGTTCCATGTTTGTT+GGG | + | chr8.3:64362204-64362223 | MS.gene071824:intron | 35.0% | |
GATTGGGATTAAGTTCACAA+AGG | - | chr8.3:64361400-64361419 | None:intergenic | 35.0% | |
GGTGGAATGTTTAAATCATC+TGG | + | chr8.3:64363315-64363334 | MS.gene071824:intron | 35.0% | |
TAGGGAATCAGAACAAACTA+TGG | + | chr8.3:64363712-64363731 | MS.gene071824:intron | 35.0% | |
TATGTAGGCAATGGGAAAAT+GGG | + | chr8.3:64361221-64361240 | MS.gene071824:intron | 35.0% | |
TATTGGACACTTACATGTGT+TGG | + | chr8.3:64361145-64361164 | MS.gene071824:intron | 35.0% | |
TCAAGTGAAATCACACATGT+CGG | + | chr8.3:64361249-64361268 | MS.gene071824:intron | 35.0% | |
TCTTAAACATGCGCTACATA+AGG | - | chr8.3:64363548-64363567 | None:intergenic | 35.0% | |
TGTTATAAGCTATGGAACAC+AGG | + | chr8.3:64361186-64361205 | MS.gene071824:intron | 35.0% | |
TTCTTCAATGCAGAACAAAG+AGG | - | chr8.3:64363064-64363083 | None:intergenic | 35.0% | |
TTGATTCCTGTACCACAATT+AGG | - | chr8.3:64362864-64362883 | None:intergenic | 35.0% | |
TTTCCTCTTCAAAGTGTGAA+GGG | + | chr8.3:64361755-64361774 | MS.gene071824:intron | 35.0% | |
! | ACTTGTTTCCATGATGGAAT+TGG | + | chr8.3:64362889-64362908 | MS.gene071824:CDS | 35.0% |
! | AGTTTATATCGCAGAGCATT+CGG | + | chr8.3:64362615-64362634 | MS.gene071824:CDS | 35.0% |
! | CATTTTCCTAATTGTGGTAC+AGG | + | chr8.3:64362855-64362874 | MS.gene071824:intron | 35.0% |
! | GGCTTCTTGAATGTCTTTTT+GGG | - | chr8.3:64363952-64363971 | None:intergenic | 35.0% |
! | TCTAGGATTTAAGTAAGGTG+AGG | - | chr8.3:64363094-64363113 | None:intergenic | 35.0% |
! | TGGCTTCTTGAATGTCTTTT+TGG | - | chr8.3:64363953-64363972 | None:intergenic | 35.0% |
! | TTAGGTTTCGATCAAGTTGT+GGG | + | chr8.3:64361974-64361993 | MS.gene071824:intron | 35.0% |
! | TTTTCCCATTGCCTACATAT+CGG | - | chr8.3:64361220-64361239 | None:intergenic | 35.0% |
! | TTTTCCTCTTCAAAGTGTGA+AGG | + | chr8.3:64361754-64361773 | MS.gene071824:intron | 35.0% |
!! | CAGACTAGTTCTATGTTTGT+TGG | + | chr8.3:64361801-64361820 | MS.gene071824:intron | 35.0% |
!! | GGTTGGTAATTGTTGTTGAT+GGG | + | chr8.3:64362305-64362324 | MS.gene071824:intron | 35.0% |
!! | TACTTTGGGATGATTGTCAT+TGG | + | chr8.3:64363007-64363026 | MS.gene071824:CDS | 35.0% |
!! | TCTCTAGAGTCTACATCATT+GGG | - | chr8.3:64362391-64362410 | None:intergenic | 35.0% |
!! | TTAAGTGCAAGCATTGGAAA+TGG | - | chr8.3:64363912-64363931 | None:intergenic | 35.0% |
!! | TTCTCTAGAGTCTACATCAT+TGG | - | chr8.3:64362392-64362411 | None:intergenic | 35.0% |
!!! | AATCTGAGGCTCTAAAGTTT+TGG | + | chr8.3:64361014-64361033 | MS.gene071824:intron | 35.0% |
!!! | GGCTCTAAAGTTTTGGTATA+AGG | + | chr8.3:64361021-64361040 | MS.gene071824:intron | 35.0% |
AACACCGATATGTAGGCAAT+GGG | + | chr8.3:64361213-64361232 | MS.gene071824:intron | 40.0% | |
AAGTGAAGAAGAGAACAGGA+GGG | - | chr8.3:64360462-64360481 | None:intergenic | 40.0% | |
ACAATTCACAACTTACACCC+AGG | - | chr8.3:64361553-64361572 | None:intergenic | 40.0% | |
ACTCTACAACCACACAAACT+GGG | + | chr8.3:64360360-64360379 | MS.gene071824:CDS | 40.0% | |
ACTTAATGATCTCTGCCAGA+AGG | + | chr8.3:64363926-64363945 | MS.gene071824:CDS | 40.0% | |
ACTTCTCTGCCTAATTACCA+AGG | - | chr8.3:64362779-64362798 | None:intergenic | 40.0% | |
ATCATTGGGGGAAAAAAACG+AGG | - | chr8.3:64362377-64362396 | None:intergenic | 40.0% | |
ATGCAGTGTCATGTGTTGTA+TGG | + | chr8.3:64362500-64362519 | MS.gene071824:intron | 40.0% | |
CAAAGAGGCAGCACTAATAA+AGG | - | chr8.3:64363049-64363068 | None:intergenic | 40.0% | |
CAAGGACTAAAGGCAAAAAG+TGG | - | chr8.3:64363450-64363469 | None:intergenic | 40.0% | |
CACATAAGCCAATTCCATCA+TGG | - | chr8.3:64362900-64362919 | None:intergenic | 40.0% | |
CATTCGGCTACTAAAATTGG+AGG | + | chr8.3:64362631-64362650 | MS.gene071824:CDS | 40.0% | |
CGGATACACATGTTCTACAT+AGG | + | chr8.3:64361309-64361328 | MS.gene071824:intron | 40.0% | |
CTTCAAGGTTTCTTGTCCTA+TGG | + | chr8.3:64362965-64362984 | MS.gene071824:CDS | 40.0% | |
GAAAAAACTCCGGCAAGTAA+TGG | - | chr8.3:64360528-64360547 | None:intergenic | 40.0% | |
GAGCATTCGGCTACTAAAAT+TGG | + | chr8.3:64362628-64362647 | MS.gene071824:CDS | 40.0% | |
GAGGTTGTTAGTGAAACTCA+CGG | + | chr8.3:64362018-64362037 | MS.gene071824:intron | 40.0% | |
GGTAGTTTCTCTTTGCAACA+AGG | - | chr8.3:64364004-64364023 | None:intergenic | 40.0% | |
GTATTAGACATGTCTGACAC+CGG | + | chr8.3:64361282-64361301 | MS.gene071824:intron | 40.0% | |
GTCAGACGAGTATAGGATAA+CGG | - | chr8.3:64362946-64362965 | None:intergenic | 40.0% | |
GTGACTGTGATATACAAGGA+TGG | - | chr8.3:64361378-64361397 | None:intergenic | 40.0% | |
GTGTCGTATTGTGTCAGTAT+TGG | + | chr8.3:64361128-64361147 | MS.gene071824:intron | 40.0% | |
GTGTTTAAACTGTTGAGGGT+TGG | + | chr8.3:64361635-64361654 | MS.gene071824:intron | 40.0% | |
TCTTCAAAGTGTGAAGGGTT+GGG | + | chr8.3:64361760-64361779 | MS.gene071824:intron | 40.0% | |
TGATTTCCATTCCAGCAGTT+AGG | + | chr8.3:64363284-64363303 | MS.gene071824:intron | 40.0% | |
TTAGACATGCCTTCAATCTG+AGG | + | chr8.3:64361000-64361019 | MS.gene071824:intron | 40.0% | |
TTGTTGAAGGGAAGAAAGCT+TGG | + | chr8.3:64360641-64360660 | MS.gene071824:CDS | 40.0% | |
! | ATCATCTGGAATTGCTTGTG+AGG | + | chr8.3:64363329-64363348 | MS.gene071824:intron | 40.0% |
! | CCCAGGTTGAATTAACTTCT+TGG | - | chr8.3:64361536-64361555 | None:intergenic | 40.0% |
! | GTAGGTTGGAGTTCTTATAG+AGG | + | chr8.3:64363884-64363903 | MS.gene071824:intron | 40.0% |
! | GTGCGCATGAATCACATTTT+CGG | - | chr8.3:64363982-64364001 | None:intergenic | 40.0% |
! | GTTAGCATGTTGGTTGCTTA+AGG | + | chr8.3:64361877-64361896 | MS.gene071824:intron | 40.0% |
! | GTTAGGTTTCGATCAAGTTG+TGG | + | chr8.3:64361973-64361992 | MS.gene071824:intron | 40.0% |
! | GTTCTATGTTTGTTGGGTTC+TGG | + | chr8.3:64362108-64362127 | MS.gene071824:intron | 40.0% |
! | TCTAGAGTCTACATCATTGG+GGG | - | chr8.3:64362389-64362408 | None:intergenic | 40.0% |
!! | ACTTTAGAGCCTCAGATTGA+AGG | - | chr8.3:64361012-64361031 | None:intergenic | 40.0% |
!! | CGAGTATAGGATAACGGAAT+CGG | - | chr8.3:64362940-64362959 | None:intergenic | 40.0% |
!! | CTCTAGAGTCTACATCATTG+GGG | - | chr8.3:64362390-64362409 | None:intergenic | 40.0% |
!! | GGATTCTAGAAGAAGCATCT+TGG | + | chr8.3:64362652-64362671 | MS.gene071824:CDS | 40.0% |
!! | GGGTTGGTAATTGTTGTTGA+TGG | + | chr8.3:64362304-64362323 | MS.gene071824:intron | 40.0% |
!! | TCTAAGGAGCATTCACCAAA+TGG | + | chr8.3:64364026-64364045 | MS.gene071824:CDS | 40.0% |
!! | TTTGTTCTGGGTTAGCATGT+TGG | + | chr8.3:64361867-64361886 | MS.gene071824:intron | 40.0% |
!!! | GGGTGGTTTTGAAGTTAAGA+AGG | + | chr8.3:64360732-64360751 | MS.gene071824:CDS | 40.0% |
!!! | GTTGCTATTGGTTTTCAGGA+CGG | + | chr8.3:64360600-64360619 | MS.gene071824:CDS | 40.0% |
!!! | TGTTGGGTTCTGGACAATTT+TGG | + | chr8.3:64362118-64362137 | MS.gene071824:intron | 40.0% |
!!! | TTGCGTTGCTATTGGTTTTC+AGG | + | chr8.3:64360596-64360615 | MS.gene071824:CDS | 40.0% |
AAAGGGTAGCCCAACAAACA+TGG | - | chr8.3:64362216-64362235 | None:intergenic | 45.0% | |
ACTGTTGATGTCAGTGGGAA+GGG | + | chr8.3:64360712-64360731 | MS.gene071824:CDS | 45.0% | |
AGAAAAAGTGACGCACGTGA+CGG | - | chr8.3:64360405-64360424 | None:intergenic | 45.0% | |
AGGACACAACACCGATATGT+AGG | + | chr8.3:64361206-64361225 | MS.gene071824:intron | 45.0% | |
ATGGCTACTGTTGATGTCAG+TGG | + | chr8.3:64360706-64360725 | MS.gene071824:CDS | 45.0% | |
CAACACCGATATGTAGGCAA+TGG | + | chr8.3:64361212-64361231 | MS.gene071824:intron | 45.0% | |
CACTCTACAACCACACAAAC+TGG | + | chr8.3:64360359-64360378 | MS.gene071824:CDS | 45.0% | |
CCAAAACCTAACTGCTGGAA+TGG | - | chr8.3:64363293-64363312 | None:intergenic | 45.0% | |
CCTATACTCGTCTGACTTCA+AGG | + | chr8.3:64362950-64362969 | MS.gene071824:CDS | 45.0% | |
CCTTGAAGTCAGACGAGTAT+AGG | - | chr8.3:64362953-64362972 | None:intergenic | 45.0% | |
CGTAGCACAGGAAAAAACTC+CGG | - | chr8.3:64360538-64360557 | None:intergenic | 45.0% | |
CTCTTCAAAGTGTGAAGGGT+TGG | + | chr8.3:64361759-64361778 | MS.gene071824:intron | 45.0% | |
GAAGTGAAGAAGAGAACAGG+AGG | - | chr8.3:64360463-64360482 | None:intergenic | 45.0% | |
GACGCTCCCTATCATACTTT+GGG | + | chr8.3:64362993-64363012 | MS.gene071824:CDS | 45.0% | |
GCAGCACTAATAAAGGTAGC+AGG | - | chr8.3:64363042-64363061 | None:intergenic | 45.0% | |
GGCTTATGTGAACAGCTTCT+GGG | + | chr8.3:64362910-64362929 | MS.gene071824:CDS | 45.0% | |
TACTGTTGATGTCAGTGGGA+AGG | + | chr8.3:64360711-64360730 | MS.gene071824:CDS | 45.0% | |
TGACGCTCCCTATCATACTT+TGG | + | chr8.3:64362992-64363011 | MS.gene071824:CDS | 45.0% | |
TGGCTACTGTTGATGTCAGT+GGG | + | chr8.3:64360707-64360726 | MS.gene071824:CDS | 45.0% | |
TGGCTTATGTGAACAGCTTC+TGG | + | chr8.3:64362909-64362928 | MS.gene071824:CDS | 45.0% | |
TTGGTGAATGCTCCTTAGAG+TGG | - | chr8.3:64364025-64364044 | None:intergenic | 45.0% | |
! | CAACCCTTCACACTTTGAAG+AGG | - | chr8.3:64361761-64361780 | None:intergenic | 45.0% |
! | CCATTCCAGCAGTTAGGTTT+TGG | + | chr8.3:64363290-64363309 | MS.gene071824:intron | 45.0% |
! | GTTTCGATCAAGTTGTGGGT+GGG | + | chr8.3:64361978-64361997 | MS.gene071824:intron | 45.0% |
! | TCTAGAGAAGCATGCATGCA+AGG | + | chr8.3:64362403-64362422 | MS.gene071824:intron | 45.0% |
! | TTTCGATCAAGTTGTGGGTG+GGG | + | chr8.3:64361979-64361998 | MS.gene071824:intron | 45.0% |
!! | GAATGTCTTTTTGGGCCTTC+TGG | - | chr8.3:64363944-64363963 | None:intergenic | 45.0% |
!! | TCCAGCAGTTAGGTTTTGGT+GGG | + | chr8.3:64363294-64363313 | MS.gene071824:intron | 45.0% |
!! | TTCCAGCAGTTAGGTTTTGG+TGG | + | chr8.3:64363293-64363312 | MS.gene071824:intron | 45.0% |
ACCAATAGCAACGCAAGAGC+AGG | - | chr8.3:64360592-64360611 | None:intergenic | 50.0% | |
ACCCACCAAAACCTAACTGC+TGG | - | chr8.3:64363298-64363317 | None:intergenic | 50.0% | |
ACGAGGAACCCGATCAAACA+TGG | - | chr8.3:64362360-64362379 | None:intergenic | 50.0% | |
CCAATCGCATTACGGTTGCT+GGG | + | chr8.3:64361414-64361433 | MS.gene071824:intron | 50.0% | |
CCAGCAACCGTAATGCGATT+GGG | - | chr8.3:64361416-64361435 | None:intergenic | 50.0% | |
GAACAGGAGGGACTAAAGAG+AGG | - | chr8.3:64360450-64360469 | None:intergenic | 50.0% | |
GAACATGTGTATCCGCCATC+CGG | - | chr8.3:64361304-64361323 | None:intergenic | 50.0% | |
GCAGGAGCAGTAAGCTGATA+AGG | - | chr8.3:64360574-64360593 | None:intergenic | 50.0% | |
TAAAGAGAGGATGACACGCG+AGG | - | chr8.3:64360437-64360456 | None:intergenic | 50.0% | |
TACAGTCAAGGCTGTCTCCA+AGG | + | chr8.3:64362262-64362281 | MS.gene071824:intron | 50.0% | |
TAGACATGTCTGACACCGGA+TGG | + | chr8.3:64361286-64361305 | MS.gene071824:intron | 50.0% | |
TCCTGCTCTTGCGTTGCTAT+TGG | + | chr8.3:64360588-64360607 | MS.gene071824:CDS | 50.0% | |
TGACGTGTTGTGTCTAGGCT+TGG | + | chr8.3:64362061-64362080 | MS.gene071824:intron | 50.0% | |
TGCAGTGACGTGTTGTGTCT+AGG | + | chr8.3:64362056-64362075 | MS.gene071824:intron | 50.0% | |
! | CAAGTAATGGAACCAGACGG+CGG | - | chr8.3:64360515-64360534 | None:intergenic | 50.0% |
! | CAAGTTGTGGGTGGGGTTTT+GGG | + | chr8.3:64361986-64362005 | MS.gene071824:intron | 50.0% |
! | CGGCAAGTAATGGAACCAGA+CGG | - | chr8.3:64360518-64360537 | None:intergenic | 50.0% |
! | CGTCTGGTTCCATTACTTGC+CGG | + | chr8.3:64360516-64360535 | MS.gene071824:CDS | 50.0% |
! | GGTTTCGATCAAGTTGTGGG+TGG | + | chr8.3:64361977-64361996 | MS.gene071824:intron | 50.0% |
!! | AGCAGTTAGGTTTTGGTGGG+TGG | + | chr8.3:64363297-64363316 | MS.gene071824:intron | 50.0% |
!! | AGGAGCATTCACCAAATGGC+TGG | + | chr8.3:64364030-64364049 | MS.gene071824:CDS | 50.0% |
!! | CACACATGTCGGTGTTGTGT+TGG | + | chr8.3:64361260-64361279 | MS.gene071824:intron | 50.0% |
!! | TCAAGTTGTGGGTGGGGTTT+TGG | + | chr8.3:64361985-64362004 | MS.gene071824:intron | 50.0% |
!!! | GCTATTGGTTTTCAGGACGG+AGG | + | chr8.3:64360603-64360622 | MS.gene071824:CDS | 50.0% |
AAAAGTGACGCACGTGACGG+AGG | - | chr8.3:64360402-64360421 | None:intergenic | 55.0% | |
ACATGTCTGACACCGGATGG+CGG | + | chr8.3:64361289-64361308 | MS.gene071824:intron | 55.0% | |
AGCGAAGAAGCTCGTAGCAC+AGG | - | chr8.3:64360550-64360569 | None:intergenic | 55.0% | |
CCCAATCGCATTACGGTTGC+TGG | + | chr8.3:64361413-64361432 | MS.gene071824:intron | 55.0% | |
CCCAGCAACCGTAATGCGAT+TGG | - | chr8.3:64361417-64361436 | None:intergenic | 55.0% | |
GGTGTGTGACCCAGTTTGTG+TGG | - | chr8.3:64360372-64360391 | None:intergenic | 55.0% | |
GTTGATGTCAGTGGGAAGGG+TGG | + | chr8.3:64360715-64360734 | MS.gene071824:CDS | 55.0% | |
TAGGAGCTAGGCCAGCCATT+TGG | - | chr8.3:64364044-64364063 | None:intergenic | 55.0% | |
! | AAAGTGACGCACGTGACGGA+GGG | - | chr8.3:64360401-64360420 | None:intergenic | 55.0% |
!! | TAGGGAGCGTCAGATGCCAT+AGG | - | chr8.3:64362984-64363003 | None:intergenic | 55.0% |
!!! | GGGTTTTGGGTTGGTAGTCG+AGG | + | chr8.3:64361999-64362018 | MS.gene071824:intron | 55.0% |
!!! | TTGTGGGTGGGGTTTTGGGT+TGG | + | chr8.3:64361990-64362009 | MS.gene071824:intron | 55.0% |
GAACCAGACGGCGGAGTTGT+AGG | - | chr8.3:64360506-64360525 | None:intergenic | 60.0% | |
GGAGTTGTAGGCGGCGATGA+CGG | - | chr8.3:64360494-64360513 | None:intergenic | 60.0% | |
CCAGACGGCGGAGTTGTAGG+CGG | - | chr8.3:64360503-64360522 | None:intergenic | 65.0% | |
! | GCACGTGACGGAGGGAGGAA+CGG | - | chr8.3:64360393-64360412 | None:intergenic | 65.0% |
! | GTTGTAGGCGGCGATGACGG+CGG | - | chr8.3:64360491-64360510 | None:intergenic | 65.0% |
CCGCCTACAACTCCGCCGTC+TGG | + | chr8.3:64360500-64360519 | MS.gene071824:CDS | 70.0% | |
! | GTGACGCACGTGACGGAGGG+AGG | - | chr8.3:64360398-64360417 | None:intergenic | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.3 | gene | 64360343 | 64364064 | 64360343 | ID=MS.gene071824 |
chr8.3 | mRNA | 64360343 | 64364064 | 64360343 | ID=MS.gene071824.t1;Parent=MS.gene071824 |
chr8.3 | exon | 64360343 | 64360795 | 64360343 | ID=MS.gene071824.t1.exon1;Parent=MS.gene071824.t1 |
chr8.3 | CDS | 64360343 | 64360795 | 64360343 | ID=cds.MS.gene071824.t1;Parent=MS.gene071824.t1 |
chr8.3 | exon | 64362506 | 64362673 | 64362506 | ID=MS.gene071824.t1.exon2;Parent=MS.gene071824.t1 |
chr8.3 | CDS | 64362506 | 64362673 | 64362506 | ID=cds.MS.gene071824.t1;Parent=MS.gene071824.t1 |
chr8.3 | exon | 64362877 | 64363083 | 64362877 | ID=MS.gene071824.t1.exon3;Parent=MS.gene071824.t1 |
chr8.3 | CDS | 64362877 | 64363083 | 64362877 | ID=cds.MS.gene071824.t1;Parent=MS.gene071824.t1 |
chr8.3 | exon | 64363888 | 64364064 | 64363888 | ID=MS.gene071824.t1.exon4;Parent=MS.gene071824.t1 |
chr8.3 | CDS | 64363888 | 64364064 | 64363888 | ID=cds.MS.gene071824.t1;Parent=MS.gene071824.t1 |
Gene Sequence |
Protein sequence |