AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene071830

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene071830.t1 MTR_2g035020 92.105 228 18 0 1 228 32 259 2.83e-149 425
MS.gene071830.t1 MTR_2g034990 80.702 228 44 0 1 228 32 259 3.61e-132 381
MS.gene071830.t1 MTR_5g029800 67.544 228 70 1 1 228 32 255 2.03e-106 315
MS.gene071830.t1 MTR_5g067170 66.812 229 72 2 1 228 32 257 8.66e-106 314
MS.gene071830.t1 MTR_7g012120 69.737 228 66 2 1 228 37 261 6.67e-103 306
MS.gene071830.t1 MTR_4g117960 64.474 228 79 1 1 228 32 257 6.23e-102 304
MS.gene071830.t1 MTR_4g117980 60.965 228 89 0 1 228 32 259 2.82e-95 287
MS.gene071830.t1 MTR_6g035185 60.088 228 91 0 1 228 32 259 5.37e-91 276
MS.gene071830.t1 MTR_8g032950 59.211 228 90 1 1 228 33 257 1.57e-85 262
MS.gene071830.t1 MTR_6g035265 55.702 228 92 2 1 228 32 250 2.02e-83 256
MS.gene071830.t1 MTR_2g035040 80.282 142 28 0 87 228 23 164 6.53e-81 247
MS.gene071830.t1 MTR_0536s0020 51.754 228 100 2 1 228 39 256 1.22e-80 249
MS.gene071830.t1 MTR_4g117890 52.193 228 99 2 1 228 34 251 5.64e-80 248
MS.gene071830.t1 MTR_4g117970 59.890 182 69 1 47 228 53 230 5.09e-73 228
MS.gene071830.t1 MTR_0536s0010 47.807 228 107 2 1 228 42 257 5.38e-69 219
MS.gene071830.t1 MTR_4g118000 47.577 227 106 2 1 227 33 246 1.08e-68 218
MS.gene071830.t1 MTR_4g117950 46.930 228 110 2 1 228 27 243 7.44e-66 211
MS.gene071830.t1 MTR_0536s0030 46.316 190 92 2 1 190 1 180 1.49e-53 176
MS.gene071830.t1 MTR_4g031800 37.946 224 131 3 1 222 30 247 6.55e-45 156
MS.gene071830.t1 MTR_5g039900 33.193 238 145 5 1 228 34 267 1.68e-36 134
MS.gene071830.t1 MTR_4g485630 33.898 236 141 5 1 228 30 258 7.43e-36 132
MS.gene071830.t1 MTR_2g035050 78.313 83 18 0 1 83 32 114 1.33e-33 118
MS.gene071830.t1 MTR_7g117405 34.894 235 140 6 1 226 33 263 2.34e-33 125
MS.gene071830.t1 MTR_6g035295 33.473 239 143 6 1 227 33 267 2.93e-31 119
MS.gene071830.t1 MTR_5g016660 30.932 236 149 5 1 226 31 262 3.17e-31 119
MS.gene071830.t1 MTR_7g070740 33.061 245 132 8 1 226 32 263 1.28e-30 118
MS.gene071830.t1 MTR_5g045970 32.377 244 141 7 1 228 37 272 2.40e-30 117
MS.gene071830.t1 MTR_8g066610 30.453 243 150 6 1 228 30 268 2.89e-29 114
MS.gene071830.t1 MTR_4g485620 29.565 230 145 5 1 217 10 235 1.88e-28 112
MS.gene071830.t1 MTR_8g044140 31.579 228 141 6 9 226 6 228 2.99e-28 111
MS.gene071830.t1 MTR_7g102450 31.513 238 133 7 1 227 32 250 4.33e-28 110
MS.gene071830.t1 MTR_7g070860 33.766 231 122 7 1 213 28 245 6.59e-28 110
MS.gene071830.t1 MTR_7g070660 31.513 238 136 6 1 222 32 258 1.26e-27 109
MS.gene071830.t1 MTR_7g070780 32.035 231 126 7 1 213 32 249 2.09e-27 109
MS.gene071830.t1 MTR_7g070800 32.900 231 124 7 1 213 27 244 2.14e-27 109
MS.gene071830.t1 MTR_5g045960 29.167 240 154 6 1 228 30 265 2.48e-27 108
MS.gene071830.t1 MTR_7g070930 31.687 243 138 7 1 226 35 266 4.93e-27 108
MS.gene071830.t1 MTR_5g040030 30.252 238 151 7 1 227 35 268 1.09e-26 107
MS.gene071830.t1 MTR_7g070910 32.500 240 140 8 1 226 32 263 1.35e-26 107
MS.gene071830.t1 MTR_7g055710 29.583 240 147 6 1 226 32 263 2.25e-26 106
MS.gene071830.t1 MTR_7g070610 30.041 243 142 7 1 226 34 265 2.68e-26 106
MS.gene071830.t1 MTR_1g040310 31.356 236 146 6 1 226 36 265 3.07e-26 105
MS.gene071830.t1 MTR_1g062380 30.579 242 144 8 1 226 37 270 8.25e-26 104
MS.gene071830.t1 MTR_4g485590 34.310 239 116 7 1 228 30 238 2.62e-25 102
MS.gene071830.t1 MTR_7g071040 31.687 243 138 7 1 226 38 269 3.21e-25 103
MS.gene071830.t1 MTR_4g108250 30.800 250 134 9 1 226 32 266 4.37e-25 102
MS.gene071830.t1 MTR_7g070940 31.081 222 140 4 1 213 30 247 1.61e-23 98.2
MS.gene071830.t1 MTR_7g102550 30.263 228 138 8 1 214 30 250 2.23e-23 97.8
MS.gene071830.t1 MTR_7g070810 30.131 229 147 4 1 220 30 254 2.52e-23 97.8
MS.gene071830.t1 MTR_7g102560 31.878 229 138 9 9 227 40 260 6.18e-23 96.7
MS.gene071830.t1 MTR_7g102490 28.139 231 150 6 9 227 39 265 2.51e-21 92.0
MS.gene071830.t1 MTR_7g070870 29.694 229 145 4 1 220 40 261 2.62e-21 92.0
MS.gene071830.t1 MTR_7g102460 28.261 230 150 7 9 227 39 264 1.22e-20 90.1
MS.gene071830.t1 MTR_7g071050 34.810 158 93 3 1 156 34 183 1.65e-20 89.4
MS.gene071830.t1 MTR_4g024020 27.706 231 152 5 9 227 39 266 3.86e-20 88.6
MS.gene071830.t1 MTR_4g485640 28.448 232 149 6 1 228 230 448 5.01e-20 88.6
MS.gene071830.t1 MTR_7g102520 28.099 242 152 8 1 228 33 266 1.30e-16 78.6
MS.gene071830.t1 MTR_7g039570 28.723 188 121 5 1 178 35 219 1.74e-16 76.3
MS.gene071830.t1 MTR_7g470590 40.426 94 53 2 1 91 32 125 2.51e-15 70.5
MS.gene071830.t1 MTR_7g070570 40.426 94 53 2 1 91 32 125 2.51e-15 70.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene071830.t1 AT2G36750 31.250 240 148 6 1 228 31 265 1.08e-31 121
MS.gene071830.t1 AT2G36770 32.099 243 143 7 1 228 35 270 3.49e-30 117
MS.gene071830.t1 AT2G36780 31.646 237 148 6 1 226 35 268 5.16e-29 113
MS.gene071830.t1 AT2G36790 30.992 242 147 7 1 228 34 269 8.18e-29 113
MS.gene071830.t1 AT4G34131 28.926 242 152 6 1 226 31 268 2.02e-28 112
MS.gene071830.t1 AT4G34138 28.862 246 150 8 1 228 32 270 1.28e-27 109
MS.gene071830.t1 AT2G36760 30.000 240 152 6 1 228 35 270 1.26e-26 107
MS.gene071830.t1 AT2G36800 30.864 243 147 7 1 228 33 269 1.59e-26 106
MS.gene071830.t1 AT4G34135 27.273 242 156 7 1 226 32 269 4.31e-26 103
MS.gene071830.t1 AT3G53160 31.064 235 147 5 5 228 34 264 5.25e-26 105
MS.gene071830.t1 AT4G34135 27.273 242 156 7 1 226 32 269 1.88e-25 103
MS.gene071830.t1 AT3G53150 29.167 240 150 8 1 226 43 276 1.80e-23 98.2
MS.gene071830.t1 AT2G15490 27.459 244 157 6 1 228 28 267 6.27e-22 94.0
MS.gene071830.t1 AT2G15490 27.459 244 157 6 1 228 28 267 7.40e-22 93.6
MS.gene071830.t1 AT2G15480 26.230 244 160 7 1 228 31 270 1.03e-21 93.2
MS.gene071830.t1 AT2G15480 26.230 244 160 7 1 228 31 270 1.18e-21 93.2
MS.gene071830.t1 AT2G15490 28.125 192 122 5 1 182 28 213 8.58e-16 74.7
MS.gene071830.t1 AT5G14860 25.000 220 148 5 9 215 48 263 3.66e-12 65.5

Find 76 sgRNAs with CRISPR-Local

Find 85 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTCCTCAATGGGTTCTTTA+AGG 0.162705 2.1:+57855649 None:intergenic
GTGATATGATGAGGAAAATT+TGG 0.225535 2.1:+57855423 None:intergenic
TGGTGATGACTGTGACTTGC+TGG 0.358260 2.1:+57855847 None:intergenic
AATCCATTGAATGTGATGTT+TGG 0.379258 2.1:+57855543 None:intergenic
AAGCCACGGGTCACAAGGTT+TGG 0.391800 2.1:-57855266 MS.gene071830:CDS
TTCTCAGACGAATTCTGATT+CGG 0.395206 2.1:-57855466 MS.gene071830:CDS
TTCAGGAAGGCCAACTTGTT+GGG 0.419048 2.1:+57855740 None:intergenic
ATCCATTGAATGTGATGTTT+GGG 0.422834 2.1:+57855544 None:intergenic
AGGAATATACTGATTACCTT+TGG 0.426674 2.1:+57855384 None:intergenic
CTTCAGGAAGGCCAACTTGT+TGG 0.436665 2.1:+57855739 None:intergenic
CCACGAGGGAGACCGCAAAA+AGG 0.443540 2.1:+57855517 None:intergenic
GACATAGATTCAATACCTTC+AGG 0.444621 2.1:+57855723 None:intergenic
AACAACTTCAGTGAACTTGA+TGG 0.445199 2.1:-57855315 MS.gene071830:CDS
ATGGATCTTCCAAGTGGTGG+TGG 0.451888 2.1:+57855686 None:intergenic
ATCCCAAACATCACATTCAA+TGG 0.454131 2.1:-57855546 MS.gene071830:CDS
CCAAGTGGTGGTGGGGTCAG+TGG 0.459253 2.1:+57855695 None:intergenic
GAAATCAGAGAGGGGAGATG+AGG 0.464698 2.1:-57855202 MS.gene071830:CDS
AGTGGTGGTGGGGTCAGTGG+TGG 0.467858 2.1:+57855698 None:intergenic
AATATACTGATTACCTTTGG+CGG 0.468359 2.1:+57855387 None:intergenic
ATTCGCAATGAATTCCTCAA+TGG 0.474451 2.1:+57855638 None:intergenic
GGTCACAAGGTTTGGCATCT+CGG 0.478074 2.1:-57855258 MS.gene071830:CDS
AGCGTCGGATGAGAGAGATT+TGG 0.482822 2.1:+57855800 None:intergenic
TTCGCAATGAATTCCTCAAT+GGG 0.487693 2.1:+57855639 None:intergenic
AAGGTAATCAGTATATTCCT+AGG 0.492720 2.1:-57855381 MS.gene071830:CDS
CGGATGAGAGAGATTTGGTA+AGG 0.496224 2.1:+57855805 None:intergenic
CCACCACTTGGAAGATCCAT+CGG 0.501403 2.1:-57855683 MS.gene071830:CDS
GTACCCATGGGTTAATGACT+TGG 0.505190 2.1:-57855583 MS.gene071830:CDS
CCGTATCAAGCATCATTCCT+AGG 0.506058 2.1:+57855364 None:intergenic
AAATCAGAGAGGGGAGATGA+GGG 0.509515 2.1:-57855201 None:intergenic
GACGGTGTGAAAGCGAATGA+AGG 0.512328 2.1:+57855773 None:intergenic
CCTCATCATATCACCTTGTG+TGG 0.513929 2.1:-57855414 MS.gene071830:CDS
CACCACTTGGAAGATCCATC+GGG 0.519940 2.1:-57855682 MS.gene071830:CDS
TGGATCTTCCAAGTGGTGGT+GGG 0.523168 2.1:+57855687 None:intergenic
CCACTGACCCCACCACCACT+TGG 0.535873 2.1:-57855695 MS.gene071830:CDS
TCTCCGACTCCACGTACCCA+TGG 0.539468 2.1:-57855596 MS.gene071830:CDS
AACCCATGGGTACGTGGAGT+CGG 0.549921 2.1:+57855593 None:intergenic
CCTAGGAATGATGCTTGATA+CGG 0.551910 2.1:-57855364 MS.gene071830:CDS
GAAGGCCAACTTGTTGGGAG+GGG 0.552799 2.1:+57855745 None:intergenic
CGAGAAAGCCACGGGTCACA+AGG 0.555062 2.1:-57855271 MS.gene071830:CDS
GGAAGGCCAACTTGTTGGGA+GGG 0.556374 2.1:+57855744 None:intergenic
ATTCATTGCGAATGGTCCAC+CGG 0.556564 2.1:-57855628 MS.gene071830:CDS
AGGAAGGCCAACTTGTTGGG+AGG 0.564394 2.1:+57855743 None:intergenic
GCAACTATGTTTGCATTCCG+TGG 0.565202 2.1:-57855870 None:intergenic
GAATCAGAATTCGTCTGAGA+AGG 0.565459 2.1:+57855468 None:intergenic
GGATCTTCCAAGTGGTGGTG+GGG 0.566606 2.1:+57855688 None:intergenic
ATTGAGGAATTCATTGCGAA+TGG 0.570383 2.1:-57855636 MS.gene071830:CDS
AGGAAAATTTGGAATGACAA+AGG 0.571579 2.1:+57855434 None:intergenic
CCACACAAGGTGATATGATG+AGG 0.573323 2.1:+57855414 None:intergenic
TAAGGAGCATTGCGCCCCGA+TGG 0.573404 2.1:+57855667 None:intergenic
GCGAATGAAGGAGGGAGCGT+CGG 0.576466 2.1:+57855785 None:intergenic
CTCCGACTCCACGTACCCAT+GGG 0.577508 2.1:-57855595 MS.gene071830:CDS
TGCTCAAGAGAAATCAGAGA+GGG 0.579153 2.1:-57855211 MS.gene071830:CDS
TCGGCCAAGTCATTAACCCA+TGG 0.580088 2.1:+57855579 None:intergenic
TGACTGTGACTTGCTGGCCA+CGG 0.582209 2.1:+57855853 None:intergenic
GACTTCCCCTCCCAACAAGT+TGG 0.588648 2.1:-57855750 MS.gene071830:CDS
GTCATTAACCCATGGGTACG+TGG 0.590341 2.1:+57855587 None:intergenic
GTTTGGGATCTGAAAATTGT+CGG 0.591378 2.1:+57855560 None:intergenic
CGGCCAAGTCATTAACCCAT+GGG 0.593579 2.1:+57855580 None:intergenic
CAACAAGTTGGCCTTCCTGA+AGG 0.603023 2.1:-57855738 MS.gene071830:CDS
CCGATGGATCTTCCAAGTGG+TGG 0.606081 2.1:+57855683 None:intergenic
GGTGTGAAAGCGAATGAAGG+AGG 0.611120 2.1:+57855776 None:intergenic
GAGTCGGAGATGATACAATC+CGG 0.612602 2.1:+57855609 None:intergenic
GGATGAGAGAGATTTGGTAA+GGG 0.615398 2.1:+57855806 None:intergenic
CAACACTACGAGAAAGCCAC+GGG 0.615738 2.1:-57855279 MS.gene071830:CDS
GCTCCTTAAAGAACCCATTG+AGG 0.617034 2.1:-57855652 MS.gene071830:CDS
CTTGTGTGGAAAACCGCCAA+AGG 0.618935 2.1:-57855400 MS.gene071830:CDS
ATGCCAAACCTTGTGACCCG+TGG 0.621670 2.1:+57855263 None:intergenic
GTGTGAAAGCGAATGAAGGA+GGG 0.635205 2.1:+57855777 None:intergenic
TAGATTCAATACCTTCAGGA+AGG 0.648117 2.1:+57855727 None:intergenic
ACAACACTACGAGAAAGCCA+CGG 0.654822 2.1:-57855280 MS.gene071830:CDS
GCCCCGATGGATCTTCCAAG+TGG 0.657039 2.1:+57855680 None:intergenic
TCGGAGATGATACAATCCGG+TGG 0.689005 2.1:+57855612 None:intergenic
GCTCAAGAGAAATCAGAGAG+GGG 0.703834 2.1:-57855210 MS.gene071830:CDS
TTGTTGGGAGGGGAAGTCGA+CGG 0.707653 2.1:+57855755 None:intergenic
CTGCTCAAGAGAAATCAGAG+AGG 0.724696 2.1:-57855212 MS.gene071830:CDS
ACCACTTGGAAGATCCATCG+GGG 0.734169 2.1:-57855681 MS.gene071830:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAGTAAATTGTTTGTTTTGA+GGG + chr2.1:57855578-57855597 None:intergenic 20.0%
!!! GAAGTAAATTGTTTGTTTTG+AGG + chr2.1:57855579-57855598 None:intergenic 25.0%
AAGGTAATCAGTATATTCCT+AGG - chr2.1:57855685-57855704 MS.gene071830:CDS 30.0%
AATCCATTGAATGTGATGTT+TGG + chr2.1:57855526-57855545 None:intergenic 30.0%
ATCCATTGAATGTGATGTTT+GGG + chr2.1:57855525-57855544 None:intergenic 30.0%
GTGATATGATGAGGAAAATT+TGG + chr2.1:57855646-57855665 None:intergenic 30.0%
! AATATACTGATTACCTTTGG+CGG + chr2.1:57855682-57855701 None:intergenic 30.0%
! AGGAAAATTTGGAATGACAA+AGG + chr2.1:57855635-57855654 None:intergenic 30.0%
! AGGAATATACTGATTACCTT+TGG + chr2.1:57855685-57855704 None:intergenic 30.0%
AACAACTTCAGTGAACTTGA+TGG - chr2.1:57855751-57855770 MS.gene071830:CDS 35.0%
ATCCCAAACATCACATTCAA+TGG - chr2.1:57855520-57855539 MS.gene071830:CDS 35.0%
ATTCGCAATGAATTCCTCAA+TGG + chr2.1:57855431-57855450 None:intergenic 35.0%
ATTGAGGAATTCATTGCGAA+TGG - chr2.1:57855430-57855449 MS.gene071830:CDS 35.0%
GACATAGATTCAATACCTTC+AGG + chr2.1:57855346-57855365 None:intergenic 35.0%
TAGATTCAATACCTTCAGGA+AGG + chr2.1:57855342-57855361 None:intergenic 35.0%
TTCGCAATGAATTCCTCAAT+GGG + chr2.1:57855430-57855449 None:intergenic 35.0%
TTCTCAGACGAATTCTGATT+CGG - chr2.1:57855600-57855619 MS.gene071830:CDS 35.0%
! ATTCCTCAATGGGTTCTTTA+AGG + chr2.1:57855420-57855439 None:intergenic 35.0%
! GTTTGGGATCTGAAAATTGT+CGG + chr2.1:57855509-57855528 None:intergenic 35.0%
! GTTTTGCGAATAAGAGAAGT+TGG + chr2.1:57855835-57855854 None:intergenic 35.0%
CCTAGGAATGATGCTTGATA+CGG - chr2.1:57855702-57855721 MS.gene071830:CDS 40.0%
GAATCAGAATTCGTCTGAGA+AGG + chr2.1:57855601-57855620 None:intergenic 40.0%
TGCTCAAGAGAAATCAGAGA+GGG - chr2.1:57855855-57855874 MS.gene071830:CDS 40.0%
! GGATGAGAGAGATTTGGTAA+GGG + chr2.1:57855263-57855282 None:intergenic 40.0%
! TTTGGTAAGGGATTTTGCGT+TGG + chr2.1:57855251-57855270 None:intergenic 40.0%
!!! CAATGGATTGTGCCTTTTTG+CGG - chr2.1:57855537-57855556 MS.gene071830:CDS 40.0%
ACAACACTACGAGAAAGCCA+CGG - chr2.1:57855786-57855805 MS.gene071830:CDS 45.0%
ATTCATTGCGAATGGTCCAC+CGG - chr2.1:57855438-57855457 MS.gene071830:CDS 45.0%
CCACACAAGGTGATATGATG+AGG + chr2.1:57855655-57855674 None:intergenic 45.0%
CCGTATCAAGCATCATTCCT+AGG + chr2.1:57855705-57855724 None:intergenic 45.0%
CCTCATCATATCACCTTGTG+TGG - chr2.1:57855652-57855671 MS.gene071830:CDS 45.0%
CTGCTCAAGAGAAATCAGAG+AGG - chr2.1:57855854-57855873 MS.gene071830:CDS 45.0%
GAGTCGGAGATGATACAATC+CGG + chr2.1:57855460-57855479 None:intergenic 45.0%
GCTCAAGAGAAATCAGAGAG+GGG - chr2.1:57855856-57855875 MS.gene071830:CDS 45.0%
GCTCCTTAAAGAACCCATTG+AGG - chr2.1:57855414-57855433 MS.gene071830:CDS 45.0%
GTGTGAAAGCGAATGAAGGA+GGG + chr2.1:57855292-57855311 None:intergenic 45.0%
! CGGATGAGAGAGATTTGGTA+AGG + chr2.1:57855264-57855283 None:intergenic 45.0%
! GTAAGGGATTTTGCGTTGGA+AGG + chr2.1:57855247-57855266 None:intergenic 45.0%
! GTACCCATGGGTTAATGACT+TGG - chr2.1:57855483-57855502 MS.gene071830:CDS 45.0%
! TTCAGGAAGGCCAACTTGTT+GGG + chr2.1:57855329-57855348 None:intergenic 45.0%
!!! TGTTTTGAGGGTTTCCACGA+GGG + chr2.1:57855566-57855585 None:intergenic 45.0%
!!! TTGTTTTGAGGGTTTCCACG+AGG + chr2.1:57855567-57855586 None:intergenic 45.0%
ACCACTTGGAAGATCCATCG+GGG - chr2.1:57855385-57855404 MS.gene071830:CDS 50.0%
ATGGATCTTCCAAGTGGTGG+TGG + chr2.1:57855383-57855402 None:intergenic 50.0%
CAACACTACGAGAAAGCCAC+GGG - chr2.1:57855787-57855806 MS.gene071830:CDS 50.0%
CACCACTTGGAAGATCCATC+GGG - chr2.1:57855384-57855403 MS.gene071830:CDS 50.0%
CCACCACTTGGAAGATCCAT+CGG - chr2.1:57855383-57855402 MS.gene071830:CDS 50.0%
CGGCCAAGTCATTAACCCAT+GGG + chr2.1:57855489-57855508 None:intergenic 50.0%
CTTCAGGAAGGCCAACTTGT+TGG + chr2.1:57855330-57855349 None:intergenic 50.0%
CTTGTGTGGAAAACCGCCAA+AGG - chr2.1:57855666-57855685 MS.gene071830:CDS 50.0%
GAAATCAGAGAGGGGAGATG+AGG - chr2.1:57855864-57855883 MS.gene071830:CDS 50.0%
GACGGTGTGAAAGCGAATGA+AGG + chr2.1:57855296-57855315 None:intergenic 50.0%
GGTCACAAGGTTTGGCATCT+CGG - chr2.1:57855808-57855827 MS.gene071830:CDS 50.0%
GGTGTGAAAGCGAATGAAGG+AGG + chr2.1:57855293-57855312 None:intergenic 50.0%
GTCATTAACCCATGGGTACG+TGG + chr2.1:57855482-57855501 None:intergenic 50.0%
TCGGAGATGATACAATCCGG+TGG + chr2.1:57855457-57855476 None:intergenic 50.0%
TCGGCCAAGTCATTAACCCA+TGG + chr2.1:57855490-57855509 None:intergenic 50.0%
TGGATCTTCCAAGTGGTGGT+GGG + chr2.1:57855382-57855401 None:intergenic 50.0%
! AGCGTCGGATGAGAGAGATT+TGG + chr2.1:57855269-57855288 None:intergenic 50.0%
! CTTTGGCGGTTTTCCACACA+AGG + chr2.1:57855668-57855687 None:intergenic 50.0%
! GGATTTTGCGTTGGAAGGAG+TGG + chr2.1:57855242-57855261 None:intergenic 50.0%
! TGGTGATGACTGTGACTTGC+TGG + chr2.1:57855222-57855241 None:intergenic 50.0%
!! CAACAAGTTGGCCTTCCTGA+AGG - chr2.1:57855328-57855347 MS.gene071830:CDS 50.0%
AACCCATGGGTACGTGGAGT+CGG + chr2.1:57855476-57855495 None:intergenic 55.0%
AAGCCACGGGTCACAAGGTT+TGG - chr2.1:57855800-57855819 MS.gene071830:CDS 55.0%
ATGCCAAACCTTGTGACCCG+TGG + chr2.1:57855806-57855825 None:intergenic 55.0%
CCGATGGATCTTCCAAGTGG+TGG + chr2.1:57855386-57855405 None:intergenic 55.0%
GACTTCCCCTCCCAACAAGT+TGG - chr2.1:57855316-57855335 MS.gene071830:CDS 55.0%
TTGTTGGGAGGGGAAGTCGA+CGG + chr2.1:57855314-57855333 None:intergenic 55.0%
! GGATCTTCCAAGTGGTGGTG+GGG + chr2.1:57855381-57855400 None:intergenic 55.0%
!! AGGAAGGCCAACTTGTTGGG+AGG + chr2.1:57855326-57855345 None:intergenic 55.0%
!! GAAGGCCAACTTGTTGGGAG+GGG + chr2.1:57855324-57855343 None:intergenic 55.0%
!! GGAAGGCCAACTTGTTGGGA+GGG + chr2.1:57855325-57855344 None:intergenic 55.0%
!! TGACTGTGACTTGCTGGCCA+CGG + chr2.1:57855216-57855235 None:intergenic 55.0%
CCACGAGGGAGACCGCAAAA+AGG + chr2.1:57855552-57855571 None:intergenic 60.0%
CGAGAAAGCCACGGGTCACA+AGG - chr2.1:57855795-57855814 MS.gene071830:CDS 60.0%
CTCCGACTCCACGTACCCAT+GGG - chr2.1:57855471-57855490 MS.gene071830:CDS 60.0%
GCCCCGATGGATCTTCCAAG+TGG + chr2.1:57855389-57855408 None:intergenic 60.0%
TCTCCGACTCCACGTACCCA+TGG - chr2.1:57855470-57855489 MS.gene071830:CDS 60.0%
! CCTTTTTGCGGTCTCCCTCG+TGG - chr2.1:57855549-57855568 MS.gene071830:CDS 60.0%
! GCGAATGAAGGAGGGAGCGT+CGG + chr2.1:57855284-57855303 None:intergenic 60.0%
!! TAAGGAGCATTGCGCCCCGA+TGG + chr2.1:57855402-57855421 None:intergenic 60.0%
CCACTGACCCCACCACCACT+TGG - chr2.1:57855371-57855390 MS.gene071830:CDS 65.0%
!! AGTGGTGGTGGGGTCAGTGG+TGG + chr2.1:57855371-57855390 None:intergenic 65.0%
!! CCAAGTGGTGGTGGGGTCAG+TGG + chr2.1:57855374-57855393 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr2.1 gene 57855202 57855886 57855202 ID=MS.gene071830
chr2.1 mRNA 57855202 57855886 57855202 ID=MS.gene071830.t1;Parent=MS.gene071830
chr2.1 exon 57855202 57855886 57855202 ID=MS.gene071830.t1.exon1;Parent=MS.gene071830.t1
chr2.1 CDS 57855202 57855886 57855202 ID=cds.MS.gene071830.t1;Parent=MS.gene071830.t1
Gene Sequence

>MS.gene071830

ATGTTTGCATTCCGTGGCCAGCAAGTCACAGTCATCACCACTCCTTCCAACGCAAAATCCCTTACCAAATCTCTCTCATCCGACGCTCCCTCCTTCATTCGCTTTCACACCGTCGACTTCCCCTCCCAACAAGTTGGCCTTCCTGAAGGTATTGAATCTATGTCTTCCACCACTGACCCCACCACCACTTGGAAGATCCATCGGGGCGCAATGCTCCTTAAAGAACCCATTGAGGAATTCATTGCGAATGGTCCACCGGATTGTATCATCTCCGACTCCACGTACCCATGGGTTAATGACTTGGCCGACAATTTTCAGATCCCAAACATCACATTCAATGGATTGTGCCTTTTTGCGGTCTCCCTCGTGGAAACCCTCAAAACAAACAATTTACTTCCTTCTCAGACGAATTCTGATTCGGATTCAAGTTCCTTTGTCATTCCAAATTTTCCTCATCATATCACCTTGTGTGGAAAACCGCCAAAGGTAATCAGTATATTCCTAGGAATGATGCTTGATACGGTGCTTAAAAGTAAAGCACTGATCGTCAACAACTTCAGTGAACTTGATGGAGAAGAGTGCATACAACACTACGAGAAAGCCACGGGTCACAAGGTTTGGCATCTCGGTCCAACTTCTCTTATTCGCAAAACTGCTCAAGAGAAATCAGAGAGGGGAGATGAGG
Protein sequence

>MS.gene071830.t1

MFAFRGQQVTVITTPSNAKSLTKSLSSDAPSFIRFHTVDFPSQQVGLPEGIESMSSTTDPTTTWKIHRGAMLLKEPIEEFIANGPPDCIISDSTYPWVNDLADNFQIPNITFNGLCLFAVSLVETLKTNNLLPSQTNSDSDSSSFVIPNFPHHITLCGKPPKVISIFLGMMLDTVLKSKALIVNNFSELDGEECIQHYEKATGHKVWHLGPTSLIRKTAQEKSERGDE