AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene071831

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene071831.t1 MTR_2g035020 92.105 228 18 0 1 228 32 259 2.83e-149 425
MS.gene071831.t1 MTR_2g034990 80.702 228 44 0 1 228 32 259 3.61e-132 381
MS.gene071831.t1 MTR_5g029800 67.544 228 70 1 1 228 32 255 2.03e-106 315
MS.gene071831.t1 MTR_5g067170 66.812 229 72 2 1 228 32 257 8.66e-106 314
MS.gene071831.t1 MTR_7g012120 69.737 228 66 2 1 228 37 261 6.67e-103 306
MS.gene071831.t1 MTR_4g117960 64.474 228 79 1 1 228 32 257 6.23e-102 304
MS.gene071831.t1 MTR_4g117980 60.965 228 89 0 1 228 32 259 2.82e-95 287
MS.gene071831.t1 MTR_6g035185 60.088 228 91 0 1 228 32 259 5.37e-91 276
MS.gene071831.t1 MTR_8g032950 59.211 228 90 1 1 228 33 257 1.57e-85 262
MS.gene071831.t1 MTR_6g035265 55.702 228 92 2 1 228 32 250 2.02e-83 256
MS.gene071831.t1 MTR_2g035040 80.282 142 28 0 87 228 23 164 6.53e-81 247
MS.gene071831.t1 MTR_0536s0020 51.754 228 100 2 1 228 39 256 1.22e-80 249
MS.gene071831.t1 MTR_4g117890 52.193 228 99 2 1 228 34 251 5.64e-80 248
MS.gene071831.t1 MTR_4g117970 59.890 182 69 1 47 228 53 230 5.09e-73 228
MS.gene071831.t1 MTR_0536s0010 47.807 228 107 2 1 228 42 257 5.38e-69 219
MS.gene071831.t1 MTR_4g118000 47.577 227 106 2 1 227 33 246 1.08e-68 218
MS.gene071831.t1 MTR_4g117950 46.930 228 110 2 1 228 27 243 7.44e-66 211
MS.gene071831.t1 MTR_0536s0030 46.316 190 92 2 1 190 1 180 1.49e-53 176
MS.gene071831.t1 MTR_4g031800 37.946 224 131 3 1 222 30 247 6.55e-45 156
MS.gene071831.t1 MTR_5g039900 33.193 238 145 5 1 228 34 267 1.68e-36 134
MS.gene071831.t1 MTR_4g485630 33.898 236 141 5 1 228 30 258 7.43e-36 132
MS.gene071831.t1 MTR_2g035050 78.313 83 18 0 1 83 32 114 1.33e-33 118
MS.gene071831.t1 MTR_7g117405 34.894 235 140 6 1 226 33 263 2.34e-33 125
MS.gene071831.t1 MTR_6g035295 33.473 239 143 6 1 227 33 267 2.93e-31 119
MS.gene071831.t1 MTR_5g016660 30.932 236 149 5 1 226 31 262 3.17e-31 119
MS.gene071831.t1 MTR_7g070740 33.061 245 132 8 1 226 32 263 1.28e-30 118
MS.gene071831.t1 MTR_5g045970 32.377 244 141 7 1 228 37 272 2.40e-30 117
MS.gene071831.t1 MTR_8g066610 30.453 243 150 6 1 228 30 268 2.89e-29 114
MS.gene071831.t1 MTR_4g485620 29.565 230 145 5 1 217 10 235 1.88e-28 112
MS.gene071831.t1 MTR_8g044140 31.579 228 141 6 9 226 6 228 2.99e-28 111
MS.gene071831.t1 MTR_7g102450 31.513 238 133 7 1 227 32 250 4.33e-28 110
MS.gene071831.t1 MTR_7g070860 33.766 231 122 7 1 213 28 245 6.59e-28 110
MS.gene071831.t1 MTR_7g070660 31.513 238 136 6 1 222 32 258 1.26e-27 109
MS.gene071831.t1 MTR_7g070780 32.035 231 126 7 1 213 32 249 2.09e-27 109
MS.gene071831.t1 MTR_7g070800 32.900 231 124 7 1 213 27 244 2.14e-27 109
MS.gene071831.t1 MTR_5g045960 29.167 240 154 6 1 228 30 265 2.48e-27 108
MS.gene071831.t1 MTR_7g070930 31.687 243 138 7 1 226 35 266 4.93e-27 108
MS.gene071831.t1 MTR_5g040030 30.252 238 151 7 1 227 35 268 1.09e-26 107
MS.gene071831.t1 MTR_7g070910 32.500 240 140 8 1 226 32 263 1.35e-26 107
MS.gene071831.t1 MTR_7g055710 29.583 240 147 6 1 226 32 263 2.25e-26 106
MS.gene071831.t1 MTR_7g070610 30.041 243 142 7 1 226 34 265 2.68e-26 106
MS.gene071831.t1 MTR_1g040310 31.356 236 146 6 1 226 36 265 3.07e-26 105
MS.gene071831.t1 MTR_1g062380 30.579 242 144 8 1 226 37 270 8.25e-26 104
MS.gene071831.t1 MTR_4g485590 34.310 239 116 7 1 228 30 238 2.62e-25 102
MS.gene071831.t1 MTR_7g071040 31.687 243 138 7 1 226 38 269 3.21e-25 103
MS.gene071831.t1 MTR_4g108250 30.800 250 134 9 1 226 32 266 4.37e-25 102
MS.gene071831.t1 MTR_7g070940 31.081 222 140 4 1 213 30 247 1.61e-23 98.2
MS.gene071831.t1 MTR_7g102550 30.263 228 138 8 1 214 30 250 2.23e-23 97.8
MS.gene071831.t1 MTR_7g070810 30.131 229 147 4 1 220 30 254 2.52e-23 97.8
MS.gene071831.t1 MTR_7g102560 31.878 229 138 9 9 227 40 260 6.18e-23 96.7
MS.gene071831.t1 MTR_7g102490 28.139 231 150 6 9 227 39 265 2.51e-21 92.0
MS.gene071831.t1 MTR_7g070870 29.694 229 145 4 1 220 40 261 2.62e-21 92.0
MS.gene071831.t1 MTR_7g102460 28.261 230 150 7 9 227 39 264 1.22e-20 90.1
MS.gene071831.t1 MTR_7g071050 34.810 158 93 3 1 156 34 183 1.65e-20 89.4
MS.gene071831.t1 MTR_4g024020 27.706 231 152 5 9 227 39 266 3.86e-20 88.6
MS.gene071831.t1 MTR_4g485640 28.448 232 149 6 1 228 230 448 5.01e-20 88.6
MS.gene071831.t1 MTR_7g102520 28.099 242 152 8 1 228 33 266 1.30e-16 78.6
MS.gene071831.t1 MTR_7g039570 28.723 188 121 5 1 178 35 219 1.74e-16 76.3
MS.gene071831.t1 MTR_7g470590 40.426 94 53 2 1 91 32 125 2.51e-15 70.5
MS.gene071831.t1 MTR_7g070570 40.426 94 53 2 1 91 32 125 2.51e-15 70.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene071831.t1 AT2G36750 31.250 240 148 6 1 228 31 265 1.08e-31 121
MS.gene071831.t1 AT2G36770 32.099 243 143 7 1 228 35 270 3.49e-30 117
MS.gene071831.t1 AT2G36780 31.646 237 148 6 1 226 35 268 5.16e-29 113
MS.gene071831.t1 AT2G36790 30.992 242 147 7 1 228 34 269 8.18e-29 113
MS.gene071831.t1 AT4G34131 28.926 242 152 6 1 226 31 268 2.02e-28 112
MS.gene071831.t1 AT4G34138 28.862 246 150 8 1 228 32 270 1.28e-27 109
MS.gene071831.t1 AT2G36760 30.000 240 152 6 1 228 35 270 1.26e-26 107
MS.gene071831.t1 AT2G36800 30.864 243 147 7 1 228 33 269 1.59e-26 106
MS.gene071831.t1 AT4G34135 27.273 242 156 7 1 226 32 269 4.31e-26 103
MS.gene071831.t1 AT3G53160 31.064 235 147 5 5 228 34 264 5.25e-26 105
MS.gene071831.t1 AT4G34135 27.273 242 156 7 1 226 32 269 1.88e-25 103
MS.gene071831.t1 AT3G53150 29.167 240 150 8 1 226 43 276 1.80e-23 98.2
MS.gene071831.t1 AT2G15490 27.459 244 157 6 1 228 28 267 6.27e-22 94.0
MS.gene071831.t1 AT2G15490 27.459 244 157 6 1 228 28 267 7.40e-22 93.6
MS.gene071831.t1 AT2G15480 26.230 244 160 7 1 228 31 270 1.03e-21 93.2
MS.gene071831.t1 AT2G15480 26.230 244 160 7 1 228 31 270 1.18e-21 93.2
MS.gene071831.t1 AT2G15490 28.125 192 122 5 1 182 28 213 8.58e-16 74.7
MS.gene071831.t1 AT5G14860 25.000 220 148 5 9 215 48 263 3.66e-12 65.5

Find 76 sgRNAs with CRISPR-Local

Find 85 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTCCTCAATGGGTTCTTTA+AGG 0.162705 2.1:+57842394 None:intergenic
GTGATATGATGAGGAAAATT+TGG 0.225535 2.1:+57842168 None:intergenic
TGGTGATGACTGTGACTTGC+TGG 0.358260 2.1:+57842592 None:intergenic
AATCCATTGAATGTGATGTT+TGG 0.379258 2.1:+57842288 None:intergenic
AAGCCACGGGTCACAAGGTT+TGG 0.391800 2.1:-57842011 MS.gene071831:CDS
TTCTCAGACGAATTCTGATT+CGG 0.395206 2.1:-57842211 MS.gene071831:CDS
TTCAGGAAGGCCAACTTGTT+GGG 0.419048 2.1:+57842485 None:intergenic
ATCCATTGAATGTGATGTTT+GGG 0.422834 2.1:+57842289 None:intergenic
AGGAATATACTGATTACCTT+TGG 0.426674 2.1:+57842129 None:intergenic
CTTCAGGAAGGCCAACTTGT+TGG 0.436665 2.1:+57842484 None:intergenic
CCACGAGGGAGACCGCAAAA+AGG 0.443540 2.1:+57842262 None:intergenic
GACATAGATTCAATACCTTC+AGG 0.444621 2.1:+57842468 None:intergenic
AACAACTTCAGTGAACTTGA+TGG 0.445199 2.1:-57842060 MS.gene071831:CDS
ATGGATCTTCCAAGTGGTGG+TGG 0.451888 2.1:+57842431 None:intergenic
ATCCCAAACATCACATTCAA+TGG 0.454131 2.1:-57842291 MS.gene071831:CDS
CCAAGTGGTGGTGGGGTCAG+TGG 0.459253 2.1:+57842440 None:intergenic
GAAATCAGAGAGGGGAGATG+AGG 0.464698 2.1:-57841947 MS.gene071831:CDS
AGTGGTGGTGGGGTCAGTGG+TGG 0.467858 2.1:+57842443 None:intergenic
AATATACTGATTACCTTTGG+CGG 0.468359 2.1:+57842132 None:intergenic
ATTCGCAATGAATTCCTCAA+TGG 0.474451 2.1:+57842383 None:intergenic
GGTCACAAGGTTTGGCATCT+CGG 0.478074 2.1:-57842003 MS.gene071831:CDS
AGCGTCGGATGAGAGAGATT+TGG 0.482822 2.1:+57842545 None:intergenic
TTCGCAATGAATTCCTCAAT+GGG 0.487693 2.1:+57842384 None:intergenic
AAGGTAATCAGTATATTCCT+AGG 0.492720 2.1:-57842126 MS.gene071831:CDS
CGGATGAGAGAGATTTGGTA+AGG 0.496224 2.1:+57842550 None:intergenic
CCACCACTTGGAAGATCCAT+CGG 0.501403 2.1:-57842428 MS.gene071831:CDS
GTACCCATGGGTTAATGACT+TGG 0.505190 2.1:-57842328 MS.gene071831:CDS
CCGTATCAAGCATCATTCCT+AGG 0.506058 2.1:+57842109 None:intergenic
AAATCAGAGAGGGGAGATGA+GGG 0.509515 2.1:-57841946 None:intergenic
GACGGTGTGAAAGCGAATGA+AGG 0.512328 2.1:+57842518 None:intergenic
CCTCATCATATCACCTTGTG+TGG 0.513929 2.1:-57842159 MS.gene071831:CDS
CACCACTTGGAAGATCCATC+GGG 0.519940 2.1:-57842427 MS.gene071831:CDS
TGGATCTTCCAAGTGGTGGT+GGG 0.523168 2.1:+57842432 None:intergenic
CCACTGACCCCACCACCACT+TGG 0.535873 2.1:-57842440 MS.gene071831:CDS
TCTCCGACTCCACGTACCCA+TGG 0.539468 2.1:-57842341 MS.gene071831:CDS
AACCCATGGGTACGTGGAGT+CGG 0.549921 2.1:+57842338 None:intergenic
CCTAGGAATGATGCTTGATA+CGG 0.551910 2.1:-57842109 MS.gene071831:CDS
GAAGGCCAACTTGTTGGGAG+GGG 0.552799 2.1:+57842490 None:intergenic
CGAGAAAGCCACGGGTCACA+AGG 0.555062 2.1:-57842016 MS.gene071831:CDS
GGAAGGCCAACTTGTTGGGA+GGG 0.556374 2.1:+57842489 None:intergenic
ATTCATTGCGAATGGTCCAC+CGG 0.556564 2.1:-57842373 MS.gene071831:CDS
AGGAAGGCCAACTTGTTGGG+AGG 0.564394 2.1:+57842488 None:intergenic
GCAACTATGTTTGCATTCCG+TGG 0.565202 2.1:-57842615 None:intergenic
GAATCAGAATTCGTCTGAGA+AGG 0.565459 2.1:+57842213 None:intergenic
GGATCTTCCAAGTGGTGGTG+GGG 0.566606 2.1:+57842433 None:intergenic
ATTGAGGAATTCATTGCGAA+TGG 0.570383 2.1:-57842381 MS.gene071831:CDS
AGGAAAATTTGGAATGACAA+AGG 0.571579 2.1:+57842179 None:intergenic
CCACACAAGGTGATATGATG+AGG 0.573323 2.1:+57842159 None:intergenic
TAAGGAGCATTGCGCCCCGA+TGG 0.573404 2.1:+57842412 None:intergenic
GCGAATGAAGGAGGGAGCGT+CGG 0.576466 2.1:+57842530 None:intergenic
CTCCGACTCCACGTACCCAT+GGG 0.577508 2.1:-57842340 MS.gene071831:CDS
TGCTCAAGAGAAATCAGAGA+GGG 0.579153 2.1:-57841956 MS.gene071831:CDS
TCGGCCAAGTCATTAACCCA+TGG 0.580088 2.1:+57842324 None:intergenic
TGACTGTGACTTGCTGGCCA+CGG 0.582209 2.1:+57842598 None:intergenic
GACTTCCCCTCCCAACAAGT+TGG 0.588648 2.1:-57842495 MS.gene071831:CDS
GTCATTAACCCATGGGTACG+TGG 0.590341 2.1:+57842332 None:intergenic
GTTTGGGATCTGAAAATTGT+CGG 0.591378 2.1:+57842305 None:intergenic
CGGCCAAGTCATTAACCCAT+GGG 0.593579 2.1:+57842325 None:intergenic
CAACAAGTTGGCCTTCCTGA+AGG 0.603023 2.1:-57842483 MS.gene071831:CDS
CCGATGGATCTTCCAAGTGG+TGG 0.606081 2.1:+57842428 None:intergenic
GGTGTGAAAGCGAATGAAGG+AGG 0.611120 2.1:+57842521 None:intergenic
GAGTCGGAGATGATACAATC+CGG 0.612602 2.1:+57842354 None:intergenic
GGATGAGAGAGATTTGGTAA+GGG 0.615398 2.1:+57842551 None:intergenic
CAACACTACGAGAAAGCCAC+GGG 0.615738 2.1:-57842024 MS.gene071831:CDS
GCTCCTTAAAGAACCCATTG+AGG 0.617034 2.1:-57842397 MS.gene071831:CDS
CTTGTGTGGAAAACCGCCAA+AGG 0.618935 2.1:-57842145 MS.gene071831:CDS
ATGCCAAACCTTGTGACCCG+TGG 0.621670 2.1:+57842008 None:intergenic
GTGTGAAAGCGAATGAAGGA+GGG 0.635205 2.1:+57842522 None:intergenic
TAGATTCAATACCTTCAGGA+AGG 0.648117 2.1:+57842472 None:intergenic
ACAACACTACGAGAAAGCCA+CGG 0.654822 2.1:-57842025 MS.gene071831:CDS
GCCCCGATGGATCTTCCAAG+TGG 0.657039 2.1:+57842425 None:intergenic
TCGGAGATGATACAATCCGG+TGG 0.689005 2.1:+57842357 None:intergenic
GCTCAAGAGAAATCAGAGAG+GGG 0.703834 2.1:-57841955 MS.gene071831:CDS
TTGTTGGGAGGGGAAGTCGA+CGG 0.707653 2.1:+57842500 None:intergenic
CTGCTCAAGAGAAATCAGAG+AGG 0.724696 2.1:-57841957 MS.gene071831:CDS
ACCACTTGGAAGATCCATCG+GGG 0.734169 2.1:-57842426 MS.gene071831:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAGTAAATTGTTTGTTTTGA+GGG + chr2.1:57842323-57842342 None:intergenic 20.0%
!!! GAAGTAAATTGTTTGTTTTG+AGG + chr2.1:57842324-57842343 None:intergenic 25.0%
AAGGTAATCAGTATATTCCT+AGG - chr2.1:57842430-57842449 MS.gene071831:CDS 30.0%
AATCCATTGAATGTGATGTT+TGG + chr2.1:57842271-57842290 None:intergenic 30.0%
ATCCATTGAATGTGATGTTT+GGG + chr2.1:57842270-57842289 None:intergenic 30.0%
GTGATATGATGAGGAAAATT+TGG + chr2.1:57842391-57842410 None:intergenic 30.0%
! AATATACTGATTACCTTTGG+CGG + chr2.1:57842427-57842446 None:intergenic 30.0%
! AGGAAAATTTGGAATGACAA+AGG + chr2.1:57842380-57842399 None:intergenic 30.0%
! AGGAATATACTGATTACCTT+TGG + chr2.1:57842430-57842449 None:intergenic 30.0%
AACAACTTCAGTGAACTTGA+TGG - chr2.1:57842496-57842515 MS.gene071831:CDS 35.0%
ATCCCAAACATCACATTCAA+TGG - chr2.1:57842265-57842284 MS.gene071831:CDS 35.0%
ATTCGCAATGAATTCCTCAA+TGG + chr2.1:57842176-57842195 None:intergenic 35.0%
ATTGAGGAATTCATTGCGAA+TGG - chr2.1:57842175-57842194 MS.gene071831:CDS 35.0%
GACATAGATTCAATACCTTC+AGG + chr2.1:57842091-57842110 None:intergenic 35.0%
TAGATTCAATACCTTCAGGA+AGG + chr2.1:57842087-57842106 None:intergenic 35.0%
TTCGCAATGAATTCCTCAAT+GGG + chr2.1:57842175-57842194 None:intergenic 35.0%
TTCTCAGACGAATTCTGATT+CGG - chr2.1:57842345-57842364 MS.gene071831:CDS 35.0%
! ATTCCTCAATGGGTTCTTTA+AGG + chr2.1:57842165-57842184 None:intergenic 35.0%
! GTTTGGGATCTGAAAATTGT+CGG + chr2.1:57842254-57842273 None:intergenic 35.0%
! GTTTTGCGAATAAGAGAAGT+TGG + chr2.1:57842580-57842599 None:intergenic 35.0%
CCTAGGAATGATGCTTGATA+CGG - chr2.1:57842447-57842466 MS.gene071831:CDS 40.0%
GAATCAGAATTCGTCTGAGA+AGG + chr2.1:57842346-57842365 None:intergenic 40.0%
TGCTCAAGAGAAATCAGAGA+GGG - chr2.1:57842600-57842619 MS.gene071831:CDS 40.0%
! GGATGAGAGAGATTTGGTAA+GGG + chr2.1:57842008-57842027 None:intergenic 40.0%
! TTTGGTAAGGGATTTTGCGT+TGG + chr2.1:57841996-57842015 None:intergenic 40.0%
!!! CAATGGATTGTGCCTTTTTG+CGG - chr2.1:57842282-57842301 MS.gene071831:CDS 40.0%
ACAACACTACGAGAAAGCCA+CGG - chr2.1:57842531-57842550 MS.gene071831:CDS 45.0%
ATTCATTGCGAATGGTCCAC+CGG - chr2.1:57842183-57842202 MS.gene071831:CDS 45.0%
CCACACAAGGTGATATGATG+AGG + chr2.1:57842400-57842419 None:intergenic 45.0%
CCGTATCAAGCATCATTCCT+AGG + chr2.1:57842450-57842469 None:intergenic 45.0%
CCTCATCATATCACCTTGTG+TGG - chr2.1:57842397-57842416 MS.gene071831:CDS 45.0%
CTGCTCAAGAGAAATCAGAG+AGG - chr2.1:57842599-57842618 MS.gene071831:CDS 45.0%
GAGTCGGAGATGATACAATC+CGG + chr2.1:57842205-57842224 None:intergenic 45.0%
GCTCAAGAGAAATCAGAGAG+GGG - chr2.1:57842601-57842620 MS.gene071831:CDS 45.0%
GCTCCTTAAAGAACCCATTG+AGG - chr2.1:57842159-57842178 MS.gene071831:CDS 45.0%
GTGTGAAAGCGAATGAAGGA+GGG + chr2.1:57842037-57842056 None:intergenic 45.0%
! CGGATGAGAGAGATTTGGTA+AGG + chr2.1:57842009-57842028 None:intergenic 45.0%
! GTAAGGGATTTTGCGTTGGA+AGG + chr2.1:57841992-57842011 None:intergenic 45.0%
! GTACCCATGGGTTAATGACT+TGG - chr2.1:57842228-57842247 MS.gene071831:CDS 45.0%
! TTCAGGAAGGCCAACTTGTT+GGG + chr2.1:57842074-57842093 None:intergenic 45.0%
!!! TGTTTTGAGGGTTTCCACGA+GGG + chr2.1:57842311-57842330 None:intergenic 45.0%
!!! TTGTTTTGAGGGTTTCCACG+AGG + chr2.1:57842312-57842331 None:intergenic 45.0%
ACCACTTGGAAGATCCATCG+GGG - chr2.1:57842130-57842149 MS.gene071831:CDS 50.0%
ATGGATCTTCCAAGTGGTGG+TGG + chr2.1:57842128-57842147 None:intergenic 50.0%
CAACACTACGAGAAAGCCAC+GGG - chr2.1:57842532-57842551 MS.gene071831:CDS 50.0%
CACCACTTGGAAGATCCATC+GGG - chr2.1:57842129-57842148 MS.gene071831:CDS 50.0%
CCACCACTTGGAAGATCCAT+CGG - chr2.1:57842128-57842147 MS.gene071831:CDS 50.0%
CGGCCAAGTCATTAACCCAT+GGG + chr2.1:57842234-57842253 None:intergenic 50.0%
CTTCAGGAAGGCCAACTTGT+TGG + chr2.1:57842075-57842094 None:intergenic 50.0%
CTTGTGTGGAAAACCGCCAA+AGG - chr2.1:57842411-57842430 MS.gene071831:CDS 50.0%
GAAATCAGAGAGGGGAGATG+AGG - chr2.1:57842609-57842628 MS.gene071831:CDS 50.0%
GACGGTGTGAAAGCGAATGA+AGG + chr2.1:57842041-57842060 None:intergenic 50.0%
GGTCACAAGGTTTGGCATCT+CGG - chr2.1:57842553-57842572 MS.gene071831:CDS 50.0%
GGTGTGAAAGCGAATGAAGG+AGG + chr2.1:57842038-57842057 None:intergenic 50.0%
GTCATTAACCCATGGGTACG+TGG + chr2.1:57842227-57842246 None:intergenic 50.0%
TCGGAGATGATACAATCCGG+TGG + chr2.1:57842202-57842221 None:intergenic 50.0%
TCGGCCAAGTCATTAACCCA+TGG + chr2.1:57842235-57842254 None:intergenic 50.0%
TGGATCTTCCAAGTGGTGGT+GGG + chr2.1:57842127-57842146 None:intergenic 50.0%
! AGCGTCGGATGAGAGAGATT+TGG + chr2.1:57842014-57842033 None:intergenic 50.0%
! CTTTGGCGGTTTTCCACACA+AGG + chr2.1:57842413-57842432 None:intergenic 50.0%
! GGATTTTGCGTTGGAAGGAG+TGG + chr2.1:57841987-57842006 None:intergenic 50.0%
! TGGTGATGACTGTGACTTGC+TGG + chr2.1:57841967-57841986 None:intergenic 50.0%
!! CAACAAGTTGGCCTTCCTGA+AGG - chr2.1:57842073-57842092 MS.gene071831:CDS 50.0%
AACCCATGGGTACGTGGAGT+CGG + chr2.1:57842221-57842240 None:intergenic 55.0%
AAGCCACGGGTCACAAGGTT+TGG - chr2.1:57842545-57842564 MS.gene071831:CDS 55.0%
ATGCCAAACCTTGTGACCCG+TGG + chr2.1:57842551-57842570 None:intergenic 55.0%
CCGATGGATCTTCCAAGTGG+TGG + chr2.1:57842131-57842150 None:intergenic 55.0%
GACTTCCCCTCCCAACAAGT+TGG - chr2.1:57842061-57842080 MS.gene071831:CDS 55.0%
TTGTTGGGAGGGGAAGTCGA+CGG + chr2.1:57842059-57842078 None:intergenic 55.0%
! GGATCTTCCAAGTGGTGGTG+GGG + chr2.1:57842126-57842145 None:intergenic 55.0%
!! AGGAAGGCCAACTTGTTGGG+AGG + chr2.1:57842071-57842090 None:intergenic 55.0%
!! GAAGGCCAACTTGTTGGGAG+GGG + chr2.1:57842069-57842088 None:intergenic 55.0%
!! GGAAGGCCAACTTGTTGGGA+GGG + chr2.1:57842070-57842089 None:intergenic 55.0%
!! TGACTGTGACTTGCTGGCCA+CGG + chr2.1:57841961-57841980 None:intergenic 55.0%
CCACGAGGGAGACCGCAAAA+AGG + chr2.1:57842297-57842316 None:intergenic 60.0%
CGAGAAAGCCACGGGTCACA+AGG - chr2.1:57842540-57842559 MS.gene071831:CDS 60.0%
CTCCGACTCCACGTACCCAT+GGG - chr2.1:57842216-57842235 MS.gene071831:CDS 60.0%
GCCCCGATGGATCTTCCAAG+TGG + chr2.1:57842134-57842153 None:intergenic 60.0%
TCTCCGACTCCACGTACCCA+TGG - chr2.1:57842215-57842234 MS.gene071831:CDS 60.0%
! CCTTTTTGCGGTCTCCCTCG+TGG - chr2.1:57842294-57842313 MS.gene071831:CDS 60.0%
! GCGAATGAAGGAGGGAGCGT+CGG + chr2.1:57842029-57842048 None:intergenic 60.0%
!! TAAGGAGCATTGCGCCCCGA+TGG + chr2.1:57842147-57842166 None:intergenic 60.0%
CCACTGACCCCACCACCACT+TGG - chr2.1:57842116-57842135 MS.gene071831:CDS 65.0%
!! AGTGGTGGTGGGGTCAGTGG+TGG + chr2.1:57842116-57842135 None:intergenic 65.0%
!! CCAAGTGGTGGTGGGGTCAG+TGG + chr2.1:57842119-57842138 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr2.1 gene 57841947 57842631 57841947 ID=MS.gene071831
chr2.1 mRNA 57841947 57842631 57841947 ID=MS.gene071831.t1;Parent=MS.gene071831
chr2.1 exon 57841947 57842631 57841947 ID=MS.gene071831.t1.exon1;Parent=MS.gene071831.t1
chr2.1 CDS 57841947 57842631 57841947 ID=cds.MS.gene071831.t1;Parent=MS.gene071831.t1
Gene Sequence

>MS.gene071831

ATGTTTGCATTCCGTGGCCAGCAAGTCACAGTCATCACCACTCCTTCCAACGCAAAATCCCTTACCAAATCTCTCTCATCCGACGCTCCCTCCTTCATTCGCTTTCACACCGTCGACTTCCCCTCCCAACAAGTTGGCCTTCCTGAAGGTATTGAATCTATGTCTTCCACCACTGACCCCACCACCACTTGGAAGATCCATCGGGGCGCAATGCTCCTTAAAGAACCCATTGAGGAATTCATTGCGAATGGTCCACCGGATTGTATCATCTCCGACTCCACGTACCCATGGGTTAATGACTTGGCCGACAATTTTCAGATCCCAAACATCACATTCAATGGATTGTGCCTTTTTGCGGTCTCCCTCGTGGAAACCCTCAAAACAAACAATTTACTTCCTTCTCAGACGAATTCTGATTCGGATTCAAGTTCCTTTGTCATTCCAAATTTTCCTCATCATATCACCTTGTGTGGAAAACCGCCAAAGGTAATCAGTATATTCCTAGGAATGATGCTTGATACGGTGCTTAAAAGTAAAGCACTGATCGTCAACAACTTCAGTGAACTTGATGGAGAAGAGTGCATACAACACTACGAGAAAGCCACGGGTCACAAGGTTTGGCATCTCGGTCCAACTTCTCTTATTCGCAAAACTGCTCAAGAGAAATCAGAGAGGGGAGATGAGG
Protein sequence

>MS.gene071831.t1

MFAFRGQQVTVITTPSNAKSLTKSLSSDAPSFIRFHTVDFPSQQVGLPEGIESMSSTTDPTTTWKIHRGAMLLKEPIEEFIANGPPDCIISDSTYPWVNDLADNFQIPNITFNGLCLFAVSLVETLKTNNLLPSQTNSDSDSSSFVIPNFPHHITLCGKPPKVISIFLGMMLDTVLKSKALIVNNFSELDGEECIQHYEKATGHKVWHLGPTSLIRKTAQEKSERGDE