Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene071832.t1 | XP_003594821.1 | 92.2 | 230 | 18 | 0 | 1 | 230 | 32 | 261 | 3.30E-119 | 438 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene071832.t1 | Q9AT54 | 29.5 | 241 | 155 | 4 | 1 | 230 | 26 | 262 | 3.0e-28 | 127.1 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene071832.t1 | D2D583 | 92.2 | 230 | 18 | 0 | 1 | 230 | 32 | 261 | 2.4e-119 | 438.0 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene058184 | MS.gene071832 | 0.945293 | 4.01E-104 | -1.69E-46 |
MS.gene058235 | MS.gene071832 | 0.80525 | 1.46E-49 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene071832.t1 | MTR_2g035020 | 92.174 | 230 | 18 | 0 | 1 | 230 | 32 | 261 | 1.61e-150 | 430 |
MS.gene071832.t1 | MTR_2g034990 | 80.786 | 229 | 44 | 0 | 1 | 229 | 32 | 260 | 1.21e-132 | 384 |
MS.gene071832.t1 | MTR_5g029800 | 67.826 | 230 | 70 | 1 | 1 | 230 | 32 | 257 | 1.08e-107 | 320 |
MS.gene071832.t1 | MTR_5g067170 | 66.812 | 229 | 72 | 2 | 1 | 228 | 32 | 257 | 2.73e-105 | 315 |
MS.gene071832.t1 | MTR_7g012120 | 69.697 | 231 | 67 | 2 | 1 | 231 | 37 | 264 | 1.52e-104 | 313 |
MS.gene071832.t1 | MTR_4g117960 | 64.474 | 228 | 79 | 1 | 1 | 228 | 32 | 257 | 1.27e-101 | 305 |
MS.gene071832.t1 | MTR_4g117980 | 60.870 | 230 | 90 | 0 | 1 | 230 | 32 | 261 | 1.92e-95 | 289 |
MS.gene071832.t1 | MTR_6g035185 | 60.088 | 228 | 91 | 0 | 1 | 228 | 32 | 259 | 2.82e-90 | 276 |
MS.gene071832.t1 | MTR_8g032950 | 59.211 | 228 | 90 | 1 | 1 | 228 | 33 | 257 | 5.27e-85 | 263 |
MS.gene071832.t1 | MTR_6g035265 | 55.702 | 228 | 92 | 2 | 1 | 228 | 32 | 250 | 8.35e-83 | 257 |
MS.gene071832.t1 | MTR_2g035040 | 80.282 | 142 | 28 | 0 | 87 | 228 | 23 | 164 | 2.80e-80 | 248 |
MS.gene071832.t1 | MTR_0536s0020 | 51.754 | 228 | 100 | 2 | 1 | 228 | 39 | 256 | 3.58e-80 | 250 |
MS.gene071832.t1 | MTR_4g117890 | 52.193 | 228 | 99 | 2 | 1 | 228 | 34 | 251 | 1.36e-79 | 248 |
MS.gene071832.t1 | MTR_4g117970 | 59.890 | 182 | 69 | 1 | 47 | 228 | 53 | 230 | 2.62e-72 | 228 |
MS.gene071832.t1 | MTR_0536s0010 | 47.660 | 235 | 110 | 3 | 1 | 235 | 42 | 263 | 1.18e-68 | 220 |
MS.gene071832.t1 | MTR_4g118000 | 47.577 | 227 | 106 | 2 | 1 | 227 | 33 | 246 | 4.51e-68 | 218 |
MS.gene071832.t1 | MTR_4g117950 | 46.809 | 235 | 113 | 3 | 1 | 235 | 27 | 249 | 2.01e-66 | 214 |
MS.gene071832.t1 | MTR_0536s0030 | 46.316 | 190 | 92 | 2 | 1 | 190 | 1 | 180 | 3.58e-53 | 177 |
MS.gene071832.t1 | MTR_4g031800 | 37.946 | 224 | 131 | 3 | 1 | 222 | 30 | 247 | 2.84e-44 | 156 |
MS.gene071832.t1 | MTR_5g039900 | 33.193 | 238 | 145 | 5 | 1 | 228 | 34 | 267 | 9.06e-36 | 134 |
MS.gene071832.t1 | MTR_4g485630 | 33.613 | 238 | 143 | 5 | 1 | 230 | 30 | 260 | 1.49e-35 | 133 |
MS.gene071832.t1 | MTR_2g035050 | 78.313 | 83 | 18 | 0 | 1 | 83 | 32 | 114 | 4.03e-33 | 118 |
MS.gene071832.t1 | MTR_7g117405 | 34.894 | 235 | 140 | 6 | 1 | 226 | 33 | 263 | 1.19e-32 | 125 |
MS.gene071832.t1 | MTR_5g016660 | 31.148 | 244 | 150 | 6 | 1 | 230 | 31 | 270 | 8.55e-31 | 120 |
MS.gene071832.t1 | MTR_6g035295 | 33.473 | 239 | 143 | 6 | 1 | 227 | 33 | 267 | 1.99e-30 | 119 |
MS.gene071832.t1 | MTR_7g070740 | 33.061 | 245 | 132 | 8 | 1 | 226 | 32 | 263 | 3.57e-30 | 118 |
MS.gene071832.t1 | MTR_5g045970 | 32.377 | 244 | 141 | 7 | 1 | 228 | 37 | 272 | 1.15e-29 | 117 |
MS.gene071832.t1 | MTR_8g066610 | 30.204 | 245 | 152 | 6 | 1 | 230 | 30 | 270 | 5.23e-29 | 115 |
MS.gene071832.t1 | MTR_4g485620 | 29.565 | 230 | 145 | 5 | 1 | 217 | 10 | 235 | 3.60e-28 | 112 |
MS.gene071832.t1 | MTR_8g044140 | 31.579 | 228 | 141 | 6 | 9 | 226 | 6 | 228 | 6.49e-28 | 112 |
MS.gene071832.t1 | MTR_7g102450 | 31.513 | 238 | 133 | 7 | 1 | 227 | 32 | 250 | 1.14e-27 | 111 |
MS.gene071832.t1 | MTR_7g070860 | 33.766 | 231 | 122 | 7 | 1 | 213 | 28 | 245 | 2.00e-27 | 110 |
MS.gene071832.t1 | MTR_5g045960 | 28.077 | 260 | 168 | 7 | 1 | 245 | 30 | 285 | 3.27e-27 | 110 |
MS.gene071832.t1 | MTR_7g070660 | 31.513 | 238 | 136 | 6 | 1 | 222 | 32 | 258 | 5.45e-27 | 109 |
MS.gene071832.t1 | MTR_7g070780 | 32.035 | 231 | 126 | 7 | 1 | 213 | 32 | 249 | 6.31e-27 | 109 |
MS.gene071832.t1 | MTR_7g070800 | 32.900 | 231 | 124 | 7 | 1 | 213 | 27 | 244 | 7.40e-27 | 109 |
MS.gene071832.t1 | MTR_7g070930 | 31.687 | 243 | 138 | 7 | 1 | 226 | 35 | 266 | 1.94e-26 | 108 |
MS.gene071832.t1 | MTR_7g070910 | 32.500 | 240 | 140 | 8 | 1 | 226 | 32 | 263 | 3.34e-26 | 107 |
MS.gene071832.t1 | MTR_5g040030 | 30.252 | 238 | 151 | 7 | 1 | 227 | 35 | 268 | 6.09e-26 | 106 |
MS.gene071832.t1 | MTR_7g070610 | 30.041 | 243 | 142 | 7 | 1 | 226 | 34 | 265 | 6.90e-26 | 106 |
MS.gene071832.t1 | MTR_1g040310 | 31.356 | 236 | 146 | 6 | 1 | 226 | 36 | 265 | 7.23e-26 | 106 |
MS.gene071832.t1 | MTR_7g055710 | 29.583 | 240 | 147 | 6 | 1 | 226 | 32 | 263 | 7.71e-26 | 106 |
MS.gene071832.t1 | MTR_1g062380 | 30.081 | 246 | 148 | 8 | 1 | 230 | 37 | 274 | 2.61e-25 | 104 |
MS.gene071832.t1 | MTR_4g485590 | 34.310 | 239 | 116 | 7 | 1 | 228 | 30 | 238 | 5.50e-25 | 103 |
MS.gene071832.t1 | MTR_4g108250 | 30.800 | 250 | 134 | 9 | 1 | 226 | 32 | 266 | 1.15e-24 | 103 |
MS.gene071832.t1 | MTR_7g071040 | 31.687 | 243 | 138 | 7 | 1 | 226 | 38 | 269 | 1.16e-24 | 103 |
MS.gene071832.t1 | MTR_7g102550 | 29.630 | 243 | 150 | 8 | 1 | 229 | 30 | 265 | 6.47e-24 | 100 |
MS.gene071832.t1 | MTR_7g070940 | 31.081 | 222 | 140 | 4 | 1 | 213 | 30 | 247 | 7.01e-23 | 97.8 |
MS.gene071832.t1 | MTR_7g070810 | 30.131 | 229 | 147 | 4 | 1 | 220 | 30 | 254 | 9.55e-23 | 97.4 |
MS.gene071832.t1 | MTR_7g102560 | 31.878 | 229 | 138 | 9 | 9 | 227 | 40 | 260 | 1.20e-22 | 97.1 |
MS.gene071832.t1 | MTR_7g102490 | 27.848 | 237 | 155 | 6 | 9 | 233 | 39 | 271 | 6.66e-21 | 92.4 |
MS.gene071832.t1 | MTR_7g070870 | 29.694 | 229 | 145 | 4 | 1 | 220 | 40 | 261 | 1.09e-20 | 91.7 |
MS.gene071832.t1 | MTR_7g102460 | 28.696 | 230 | 149 | 7 | 9 | 227 | 39 | 264 | 3.59e-20 | 90.1 |
MS.gene071832.t1 | MTR_4g024020 | 27.160 | 243 | 162 | 5 | 9 | 239 | 39 | 278 | 6.27e-20 | 89.4 |
MS.gene071832.t1 | MTR_7g071050 | 34.810 | 158 | 93 | 3 | 1 | 156 | 34 | 183 | 7.44e-20 | 89.0 |
MS.gene071832.t1 | MTR_4g485640 | 28.448 | 232 | 149 | 6 | 1 | 228 | 230 | 448 | 1.46e-19 | 88.6 |
MS.gene071832.t1 | MTR_7g102520 | 28.099 | 242 | 152 | 8 | 1 | 228 | 33 | 266 | 4.44e-16 | 78.2 |
MS.gene071832.t1 | MTR_7g039570 | 28.723 | 188 | 121 | 5 | 1 | 178 | 35 | 219 | 8.59e-16 | 75.5 |
MS.gene071832.t1 | MTR_7g470590 | 40.426 | 94 | 53 | 2 | 1 | 91 | 32 | 125 | 9.44e-15 | 69.7 |
MS.gene071832.t1 | MTR_7g070570 | 40.426 | 94 | 53 | 2 | 1 | 91 | 32 | 125 | 9.44e-15 | 69.7 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene071832.t1 | AT2G36750 | 31.250 | 240 | 148 | 6 | 1 | 228 | 31 | 265 | 2.95e-31 | 121 |
MS.gene071832.t1 | AT2G36770 | 32.377 | 244 | 145 | 7 | 1 | 230 | 35 | 272 | 2.42e-30 | 119 |
MS.gene071832.t1 | AT2G36780 | 31.535 | 241 | 151 | 6 | 1 | 230 | 35 | 272 | 3.93e-29 | 115 |
MS.gene071832.t1 | AT4G34131 | 28.685 | 251 | 159 | 6 | 1 | 235 | 31 | 277 | 1.20e-28 | 114 |
MS.gene071832.t1 | AT2G36790 | 30.579 | 242 | 148 | 7 | 1 | 228 | 34 | 269 | 1.83e-28 | 113 |
MS.gene071832.t1 | AT4G34138 | 28.629 | 248 | 152 | 8 | 1 | 230 | 32 | 272 | 1.38e-27 | 111 |
MS.gene071832.t1 | AT2G36760 | 30.165 | 242 | 153 | 6 | 1 | 230 | 35 | 272 | 1.16e-26 | 108 |
MS.gene071832.t1 | AT2G36800 | 30.864 | 243 | 147 | 7 | 1 | 228 | 33 | 269 | 4.80e-26 | 107 |
MS.gene071832.t1 | AT4G34135 | 26.939 | 245 | 159 | 7 | 1 | 229 | 32 | 272 | 9.00e-26 | 104 |
MS.gene071832.t1 | AT3G53160 | 30.802 | 237 | 149 | 5 | 5 | 230 | 34 | 266 | 1.24e-25 | 105 |
MS.gene071832.t1 | AT4G34135 | 27.049 | 244 | 158 | 7 | 1 | 228 | 32 | 271 | 5.12e-25 | 103 |
MS.gene071832.t1 | AT3G53150 | 29.218 | 243 | 152 | 8 | 1 | 229 | 43 | 279 | 7.51e-24 | 100 |
MS.gene071832.t1 | AT2G15490 | 27.459 | 244 | 157 | 6 | 1 | 228 | 28 | 267 | 1.32e-21 | 94.4 |
MS.gene071832.t1 | AT2G15490 | 27.459 | 244 | 157 | 6 | 1 | 228 | 28 | 267 | 1.33e-21 | 94.4 |
MS.gene071832.t1 | AT2G15480 | 26.230 | 244 | 160 | 7 | 1 | 228 | 31 | 270 | 1.92e-21 | 94.0 |
MS.gene071832.t1 | AT2G15480 | 26.230 | 244 | 160 | 7 | 1 | 228 | 31 | 270 | 1.97e-21 | 93.6 |
MS.gene071832.t1 | AT2G15490 | 28.125 | 192 | 122 | 5 | 1 | 182 | 28 | 213 | 1.15e-15 | 75.5 |
MS.gene071832.t1 | AT5G14860 | 25.000 | 220 | 148 | 5 | 9 | 215 | 48 | 263 | 5.37e-12 | 65.9 |
Find 87 sgRNAs with CRISPR-Local
Find 226 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATTCCTCAATGGGTTCTTTA+AGG | 0.162705 | 2.2:-53866757 | None:intergenic |
GTGATATGATGAGGAAAATT+TGG | 0.225535 | 2.2:-53866983 | None:intergenic |
CATCAATACTATCAAATTCT+TGG | 0.314687 | 2.2:-53869066 | None:intergenic |
GCATGAGGAATATCTTGTTT+TGG | 0.353111 | 2.2:+53869117 | MS.gene071832:CDS |
TGGTGATGACTGTGACTTGC+TGG | 0.358260 | 2.2:-53866559 | None:intergenic |
AATCCATTGAATGTGATGTT+TGG | 0.379258 | 2.2:-53866863 | None:intergenic |
AAGCCACGGGTCACAAGGTT+TGG | 0.391800 | 2.2:+53867140 | MS.gene071832:CDS |
TTCTCAGACGAATTCTGATT+CGG | 0.395206 | 2.2:+53866940 | MS.gene071832:CDS |
TTCAGGAAGGCCAACTTGTT+GGG | 0.419048 | 2.2:-53866666 | None:intergenic |
ATCCATTGAATGTGATGTTT+GGG | 0.422834 | 2.2:-53866862 | None:intergenic |
AGGAATATACTGATTACCTT+TGG | 0.426674 | 2.2:-53867022 | None:intergenic |
TCGCTTCGCTCATTGCAGAT+AGG | 0.427562 | 2.2:+53868593 | MS.gene071832:CDS |
CTTCAGGAAGGCCAACTTGT+TGG | 0.436665 | 2.2:-53866667 | None:intergenic |
CCACGAGGGAGACCGCAAAA+AGG | 0.443540 | 2.2:-53866889 | None:intergenic |
GACATAGATTCAATACCTTC+AGG | 0.444621 | 2.2:-53866683 | None:intergenic |
AACAACTTCAGTGAACTTGA+TGG | 0.445199 | 2.2:+53867091 | MS.gene071832:CDS |
ATGGATCTTCCAAGTGGTGG+TGG | 0.451888 | 2.2:-53866720 | None:intergenic |
ATCCCAAACATCACATTCAA+TGG | 0.454131 | 2.2:+53866860 | MS.gene071832:CDS |
CCAAGTGGTGGTGGGGTCAG+TGG | 0.459253 | 2.2:-53866711 | None:intergenic |
CTCATTGCAGATAGGACTGC+AGG | 0.461424 | 2.2:+53868601 | MS.gene071832:CDS |
GAAATCAGAGAGGGGAGATG+AGG | 0.464698 | 2.2:+53867204 | MS.gene071832:CDS |
AGTGGTGGTGGGGTCAGTGG+TGG | 0.467858 | 2.2:-53866708 | None:intergenic |
AATATACTGATTACCTTTGG+CGG | 0.468359 | 2.2:-53867019 | None:intergenic |
ATTCGCAATGAATTCCTCAA+TGG | 0.474451 | 2.2:-53866768 | None:intergenic |
GGTCACAAGGTTTGGCATCT+CGG | 0.478074 | 2.2:+53867148 | MS.gene071832:CDS |
AGCGTCGGATGAGAGAGATT+TGG | 0.482822 | 2.2:-53866606 | None:intergenic |
TTCGCAATGAATTCCTCAAT+GGG | 0.487693 | 2.2:-53866767 | None:intergenic |
AAGGTAATCAGTATATTCCT+AGG | 0.492720 | 2.2:+53867025 | MS.gene071832:CDS |
CGGATGAGAGAGATTTGGTA+AGG | 0.496224 | 2.2:-53866601 | None:intergenic |
CCACCACTTGGAAGATCCAT+CGG | 0.501403 | 2.2:+53866723 | MS.gene071832:CDS |
GTACCCATGGGTTAATGACT+TGG | 0.505190 | 2.2:+53866823 | MS.gene071832:CDS |
CCGTATCAAGCATCATTCCT+AGG | 0.506058 | 2.2:-53867042 | None:intergenic |
AAATCAGAGAGGGGAGATGA+GGG | 0.509515 | 2.2:+53867205 | MS.gene071832:CDS |
GACGGTGTGAAAGCGAATGA+AGG | 0.512328 | 2.2:-53866633 | None:intergenic |
CCTCATCATATCACCTTGTG+TGG | 0.513929 | 2.2:+53866992 | MS.gene071832:CDS |
CACCACTTGGAAGATCCATC+GGG | 0.519940 | 2.2:+53866724 | MS.gene071832:CDS |
TGGATCTTCCAAGTGGTGGT+GGG | 0.523168 | 2.2:-53866719 | None:intergenic |
CCACTGACCCCACCACCACT+TGG | 0.535873 | 2.2:+53866711 | MS.gene071832:CDS |
TCTCCGACTCCACGTACCCA+TGG | 0.539468 | 2.2:+53866810 | MS.gene071832:CDS |
AACCCATGGGTACGTGGAGT+CGG | 0.549921 | 2.2:-53866813 | None:intergenic |
CCTAGGAATGATGCTTGATA+CGG | 0.551910 | 2.2:+53867042 | MS.gene071832:CDS |
GAAGGCCAACTTGTTGGGAG+GGG | 0.552799 | 2.2:-53866661 | None:intergenic |
CGAGAAAGCCACGGGTCACA+AGG | 0.555062 | 2.2:+53867135 | MS.gene071832:CDS |
GGAAGGCCAACTTGTTGGGA+GGG | 0.556374 | 2.2:-53866662 | None:intergenic |
ATTCATTGCGAATGGTCCAC+CGG | 0.556564 | 2.2:+53866778 | MS.gene071832:CDS |
CAGATAGGACTGCAGGGGTG+TGG | 0.560156 | 2.2:+53868608 | MS.gene071832:CDS |
AGATATTAATTTAAAGCATG+AGG | 0.561196 | 2.2:+53869102 | MS.gene071832:CDS |
AGGAAGGCCAACTTGTTGGG+AGG | 0.564394 | 2.2:-53866663 | None:intergenic |
GCAACTATGTTTGCATTCCG+TGG | 0.565202 | 2.2:+53866536 | None:intergenic |
GAATCAGAATTCGTCTGAGA+AGG | 0.565459 | 2.2:-53866938 | None:intergenic |
GGATCTTCCAAGTGGTGGTG+GGG | 0.566606 | 2.2:-53866718 | None:intergenic |
ATTGAGGAATTCATTGCGAA+TGG | 0.570383 | 2.2:+53866770 | MS.gene071832:CDS |
AGGAAAATTTGGAATGACAA+AGG | 0.571579 | 2.2:-53866972 | None:intergenic |
CCACACAAGGTGATATGATG+AGG | 0.573323 | 2.2:-53866992 | None:intergenic |
TAAGGAGCATTGCGCCCCGA+TGG | 0.573404 | 2.2:-53866739 | None:intergenic |
GGTGGTGGGTCAGGACATGT+CGG | 0.575390 | 2.2:+53868564 | MS.gene071832:intron |
GCGAATGAAGGAGGGAGCGT+CGG | 0.576466 | 2.2:-53866621 | None:intergenic |
CTCCGACTCCACGTACCCAT+GGG | 0.577508 | 2.2:+53866811 | MS.gene071832:CDS |
TGCTCAAGAGAAATCAGAGA+GGG | 0.579153 | 2.2:+53867195 | MS.gene071832:CDS |
TCGGCCAAGTCATTAACCCA+TGG | 0.580088 | 2.2:-53866827 | None:intergenic |
TGACTGTGACTTGCTGGCCA+CGG | 0.582209 | 2.2:-53866553 | None:intergenic |
GACTTCCCCTCCCAACAAGT+TGG | 0.588648 | 2.2:+53866656 | MS.gene071832:CDS |
GTCATTAACCCATGGGTACG+TGG | 0.590341 | 2.2:-53866819 | None:intergenic |
GTTTGGGATCTGAAAATTGT+CGG | 0.591378 | 2.2:-53866846 | None:intergenic |
AGAATTTGATAGTATTGATG+AGG | 0.591688 | 2.2:+53869069 | MS.gene071832:CDS |
CGGCCAAGTCATTAACCCAT+GGG | 0.593579 | 2.2:-53866826 | None:intergenic |
GGTGGGTCAGGACATGTCGG+TGG | 0.597663 | 2.2:+53868567 | MS.gene071832:intron |
CAACAAGTTGGCCTTCCTGA+AGG | 0.603023 | 2.2:+53866668 | MS.gene071832:CDS |
CCGATGGATCTTCCAAGTGG+TGG | 0.606081 | 2.2:-53866723 | None:intergenic |
GGTGTGAAAGCGAATGAAGG+AGG | 0.611120 | 2.2:-53866630 | None:intergenic |
GAGTCGGAGATGATACAATC+CGG | 0.612602 | 2.2:-53866797 | None:intergenic |
GGATGAGAGAGATTTGGTAA+GGG | 0.615398 | 2.2:-53866600 | None:intergenic |
CAACACTACGAGAAAGCCAC+GGG | 0.615738 | 2.2:+53867127 | MS.gene071832:CDS |
GCTCCTTAAAGAACCCATTG+AGG | 0.617034 | 2.2:+53866754 | MS.gene071832:CDS |
TCATTGCAGATAGGACTGCA+GGG | 0.617178 | 2.2:+53868602 | MS.gene071832:CDS |
CTTGTGTGGAAAACCGCCAA+AGG | 0.618935 | 2.2:+53867006 | MS.gene071832:CDS |
ATGCCAAACCTTGTGACCCG+TGG | 0.621670 | 2.2:-53867143 | None:intergenic |
GTGTGAAAGCGAATGAAGGA+GGG | 0.635205 | 2.2:-53866629 | None:intergenic |
TAGATTCAATACCTTCAGGA+AGG | 0.648117 | 2.2:-53866679 | None:intergenic |
ACAACACTACGAGAAAGCCA+CGG | 0.654822 | 2.2:+53867126 | MS.gene071832:CDS |
GCCCCGATGGATCTTCCAAG+TGG | 0.657039 | 2.2:-53866726 | None:intergenic |
CATTGCAGATAGGACTGCAG+GGG | 0.683306 | 2.2:+53868603 | MS.gene071832:CDS |
TCGGAGATGATACAATCCGG+TGG | 0.689005 | 2.2:-53866794 | None:intergenic |
GCTCAAGAGAAATCAGAGAG+GGG | 0.703834 | 2.2:+53867196 | MS.gene071832:CDS |
TTGTTGGGAGGGGAAGTCGA+CGG | 0.707653 | 2.2:-53866651 | None:intergenic |
CTGCTCAAGAGAAATCAGAG+AGG | 0.724696 | 2.2:+53867194 | MS.gene071832:CDS |
ACCACTTGGAAGATCCATCG+GGG | 0.734169 | 2.2:+53866725 | MS.gene071832:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAATTGAATCAAAACAATTA+AGG | - | chr2.2:53868165-53868184 | None:intergenic | 15.0% |
!!! | AATTGTTTTGATTCAATTTT+TGG | + | chr2.2:53868166-53868185 | MS.gene071832:intron | 15.0% |
!!! | TTTAAATCTATAGATTTTGT+GGG | + | chr2.2:53868345-53868364 | MS.gene071832:intron | 15.0% |
!!! | TTTTAAATCTATAGATTTTG+TGG | + | chr2.2:53868344-53868363 | MS.gene071832:intron | 15.0% |
!! | ATAGCGAATAAAACAATTTA+GGG | - | chr2.2:53868411-53868430 | None:intergenic | 20.0% |
!! | GCTATCATTAGATTATATAT+TGG | + | chr2.2:53868686-53868705 | MS.gene071832:intron | 20.0% |
!! | TATAGCGAATAAAACAATTT+AGG | - | chr2.2:53868412-53868431 | None:intergenic | 20.0% |
!!! | AAGTAAATTGTTTGTTTTGA+GGG | - | chr2.2:53866918-53866937 | None:intergenic | 20.0% |
!!! | AGATATTAATTTAAAGCATG+AGG | + | chr2.2:53869102-53869121 | MS.gene071832:CDS | 20.0% |
! | AAAAAGAAGAAGAAAAAGAC+AGG | - | chr2.2:53868373-53868392 | None:intergenic | 25.0% |
! | ATAGTTGTTTATCAGAGAAA+TGG | - | chr2.2:53867315-53867334 | None:intergenic | 25.0% |
! | CATCAATACTATCAAATTCT+TGG | - | chr2.2:53869069-53869088 | None:intergenic | 25.0% |
! | TAGCGAATAAAACAATTTAG+GGG | - | chr2.2:53868410-53868429 | None:intergenic | 25.0% |
! | TATCAAATTCTTGGCTATTA+GGG | - | chr2.2:53869060-53869079 | None:intergenic | 25.0% |
! | TGATAAACAACTATATGAGA+TGG | + | chr2.2:53867321-53867340 | MS.gene071832:intron | 25.0% |
!! | AATAGAAAAACCAGTTTTAC+AGG | - | chr2.2:53868326-53868345 | None:intergenic | 25.0% |
!! | CACATTGAAAAATTTGTTCT+CGG | + | chr2.2:53868865-53868884 | MS.gene071832:intron | 25.0% |
!!! | AGAATTTGATAGTATTGATG+AGG | + | chr2.2:53869069-53869088 | MS.gene071832:CDS | 25.0% |
!!! | GAAGTAAATTGTTTGTTTTG+AGG | - | chr2.2:53866919-53866938 | None:intergenic | 25.0% |
!!! | TACAGGTTTTGATTTCAATA+TGG | + | chr2.2:53868944-53868963 | MS.gene071832:intron | 25.0% |
!!! | TTCTTCTTTGAAAGTTTTAC+AGG | + | chr2.2:53868927-53868946 | MS.gene071832:intron | 25.0% |
AAGGTAATCAGTATATTCCT+AGG | + | chr2.2:53867025-53867044 | MS.gene071832:CDS | 30.0% | |
AATCCATTGAATGTGATGTT+TGG | - | chr2.2:53866866-53866885 | None:intergenic | 30.0% | |
ACAAATTATGACATTGAGCA+AGG | - | chr2.2:53868724-53868743 | None:intergenic | 30.0% | |
ATCCATTGAATGTGATGTTT+GGG | - | chr2.2:53866865-53866884 | None:intergenic | 30.0% | |
CAAAGCCAACAAATCATTAT+AGG | - | chr2.2:53867860-53867879 | None:intergenic | 30.0% | |
CAATGAATTTCTTTCATCTC+TGG | + | chr2.2:53868449-53868468 | MS.gene071832:intron | 30.0% | |
CTATCAAATTCTTGGCTATT+AGG | - | chr2.2:53869061-53869080 | None:intergenic | 30.0% | |
GACTTCAAATTCATGAAAGT+CGG | - | chr2.2:53868650-53868669 | None:intergenic | 30.0% | |
GATCCATCGAAAAAATACAA+CGG | - | chr2.2:53868504-53868523 | None:intergenic | 30.0% | |
GATTTGAAGAGAGAAACATT+GGG | + | chr2.2:53867449-53867468 | MS.gene071832:intron | 30.0% | |
GTGATATGATGAGGAAAATT+TGG | - | chr2.2:53866986-53867005 | None:intergenic | 30.0% | |
GTGATGAAGCTAAAAATATC+AGG | + | chr2.2:53867776-53867795 | MS.gene071832:intron | 30.0% | |
TAAGTGACGATTGTAAACAA+CGG | - | chr2.2:53868293-53868312 | None:intergenic | 30.0% | |
TAGATTGATCGAGCAAAAAT+TGG | - | chr2.2:53868891-53868910 | None:intergenic | 30.0% | |
TGTTTACAATCGTCACTTAA+AGG | + | chr2.2:53868294-53868313 | MS.gene071832:intron | 30.0% | |
TTCGCTATACATATCAAGTT+TGG | + | chr2.2:53868423-53868442 | MS.gene071832:intron | 30.0% | |
! | AACTTTTCCTAATAACATCG+TGG | + | chr2.2:53867971-53867990 | MS.gene071832:intron | 30.0% |
! | AATATACTGATTACCTTTGG+CGG | - | chr2.2:53867022-53867041 | None:intergenic | 30.0% |
! | AGGAAAATTTGGAATGACAA+AGG | - | chr2.2:53866975-53866994 | None:intergenic | 30.0% |
! | AGGAATATACTGATTACCTT+TGG | - | chr2.2:53867025-53867044 | None:intergenic | 30.0% |
!! | CATTGATTTAAGAGTACTTG+TGG | - | chr2.2:53868090-53868109 | None:intergenic | 30.0% |
AAAACATTCACACTTCTGCT+TGG | - | chr2.2:53868002-53868021 | None:intergenic | 35.0% | |
AACAACTTCAGTGAACTTGA+TGG | + | chr2.2:53867091-53867110 | MS.gene071832:CDS | 35.0% | |
AAGAAGGGTTTGATCATTAG+GGG | + | chr2.2:53867472-53867491 | MS.gene071832:intron | 35.0% | |
AAGAAGTCGCTTGAATTCAT+AGG | - | chr2.2:53868033-53868052 | None:intergenic | 35.0% | |
AAGAATTGATCTCCATGAAC+CGG | - | chr2.2:53867613-53867632 | None:intergenic | 35.0% | |
AAGGAAGAATCCTGTAAAAC+TGG | + | chr2.2:53868313-53868332 | MS.gene071832:intron | 35.0% | |
ACAATTTAGGGGCTAATCTT+TGG | - | chr2.2:53868399-53868418 | None:intergenic | 35.0% | |
ATACTAATAACACAAGTCCG+AGG | + | chr2.2:53867640-53867659 | MS.gene071832:intron | 35.0% | |
ATCCCAAACATCACATTCAA+TGG | + | chr2.2:53866860-53866879 | MS.gene071832:CDS | 35.0% | |
ATTCGCAATGAATTCCTCAA+TGG | - | chr2.2:53866771-53866790 | None:intergenic | 35.0% | |
ATTGAGGAATTCATTGCGAA+TGG | + | chr2.2:53866770-53866789 | MS.gene071832:CDS | 35.0% | |
GAAGAAGGGTTTGATCATTA+GGG | + | chr2.2:53867471-53867490 | MS.gene071832:intron | 35.0% | |
GACATAGATTCAATACCTTC+AGG | - | chr2.2:53866686-53866705 | None:intergenic | 35.0% | |
GGATTTGAAGAGAGAAACAT+TGG | + | chr2.2:53867448-53867467 | MS.gene071832:intron | 35.0% | |
GTTTATGTCAACAGTTCTCT+CGG | + | chr2.2:53868257-53868276 | MS.gene071832:intron | 35.0% | |
TAGATTCAATACCTTCAGGA+AGG | - | chr2.2:53866682-53866701 | None:intergenic | 35.0% | |
TCGAAAAAATACAACGGTGT+TGG | - | chr2.2:53868498-53868517 | None:intergenic | 35.0% | |
TGAATTAATCATCCAGCTTG+AGG | - | chr2.2:53867927-53867946 | None:intergenic | 35.0% | |
TTCGCAATGAATTCCTCAAT+GGG | - | chr2.2:53866770-53866789 | None:intergenic | 35.0% | |
TTCTCAGACGAATTCTGATT+CGG | + | chr2.2:53866940-53866959 | MS.gene071832:CDS | 35.0% | |
TTTCTCTCTTCAAATCCCTT+CGG | - | chr2.2:53867445-53867464 | None:intergenic | 35.0% | |
! | ATTCCTCAATGGGTTCTTTA+AGG | - | chr2.2:53866760-53866779 | None:intergenic | 35.0% |
! | CTCGTCCTATAATGATTTGT+TGG | + | chr2.2:53867852-53867871 | MS.gene071832:intron | 35.0% |
! | GTTTGGGATCTGAAAATTGT+CGG | - | chr2.2:53866849-53866868 | None:intergenic | 35.0% |
! | GTTTTGCGAATAAGAGAAGT+TGG | - | chr2.2:53867175-53867194 | None:intergenic | 35.0% |
! | TGAGGTCTCTCAATCTTTTA+AGG | - | chr2.2:53867909-53867928 | None:intergenic | 35.0% |
!! | AAGCAGAAGTGTGAATGTTT+TGG | + | chr2.2:53868001-53868020 | MS.gene071832:intron | 35.0% |
!! | GCATGAGGAATATCTTGTTT+TGG | + | chr2.2:53869117-53869136 | MS.gene071832:CDS | 35.0% |
!!! | ACACCGTTGTATTTTTTCGA+TGG | + | chr2.2:53868498-53868517 | MS.gene071832:intron | 35.0% |
!!! | TCGGTGTTGTACATATGTTT+TGG | + | chr2.2:53867280-53867299 | MS.gene071832:intron | 35.0% |
!!! | TTCAATTTTTGGTGTGTACG+TGG | + | chr2.2:53868177-53868196 | MS.gene071832:intron | 35.0% |
!!! | TTTTTTAGCTCTTAGCTTGC+TGG | + | chr2.2:53868765-53868784 | MS.gene071832:intron | 35.0% |
AAAGAAAAGTGGTTGCCGAA+GGG | + | chr2.2:53867427-53867446 | MS.gene071832:intron | 40.0% | |
AGAGAGAAACATTGGGAAGA+AGG | + | chr2.2:53867456-53867475 | MS.gene071832:intron | 40.0% | |
ATAACACAAGTCCGAGGAAT+TGG | + | chr2.2:53867646-53867665 | MS.gene071832:intron | 40.0% | |
ATAGCATAGAGAAGGCTGTA+AGG | + | chr2.2:53867737-53867756 | MS.gene071832:intron | 40.0% | |
CAACTCAGAGAGAGTTAACT+CGG | + | chr2.2:53867261-53867280 | MS.gene071832:intron | 40.0% | |
CAGGAACAACCCATATGAAT+GGG | - | chr2.2:53867372-53867391 | None:intergenic | 40.0% | |
CCTAGGAATGATGCTTGATA+CGG | + | chr2.2:53867042-53867061 | MS.gene071832:CDS | 40.0% | |
CTCTATTCTTGTAGTCCACA+AGG | + | chr2.2:53868822-53868841 | MS.gene071832:intron | 40.0% | |
GAATCAGAATTCGTCTGAGA+AGG | - | chr2.2:53866941-53866960 | None:intergenic | 40.0% | |
GAGAGAAACATTGGGAAGAA+GGG | + | chr2.2:53867457-53867476 | MS.gene071832:intron | 40.0% | |
GCAACAGAATGGTGTATGAA+TGG | + | chr2.2:53867682-53867701 | MS.gene071832:intron | 40.0% | |
GCAGTAACATTTAGCTACTC+TGG | + | chr2.2:53868109-53868128 | MS.gene071832:intron | 40.0% | |
GCGAAGAAGAGAAAGAAAAG+TGG | + | chr2.2:53867416-53867435 | MS.gene071832:intron | 40.0% | |
GCTCAATATCTTAACCTGTG+GGG | - | chr2.2:53867503-53867522 | None:intergenic | 40.0% | |
GGAAGAAGGGTTTGATCATT+AGG | + | chr2.2:53867470-53867489 | MS.gene071832:intron | 40.0% | |
GGCTCAATATCTTAACCTGT+GGG | - | chr2.2:53867504-53867523 | None:intergenic | 40.0% | |
TCAGGAACAACCCATATGAA+TGG | - | chr2.2:53867373-53867392 | None:intergenic | 40.0% | |
TCTTCTTTCCCTTTCTTCTC+AGG | - | chr2.2:53867391-53867410 | None:intergenic | 40.0% | |
TGCTCAAGAGAAATCAGAGA+GGG | + | chr2.2:53867195-53867214 | MS.gene071832:CDS | 40.0% | |
TGGCTCAATATCTTAACCTG+TGG | - | chr2.2:53867505-53867524 | None:intergenic | 40.0% | |
TGTAATCCTACAACTCCTTG+TGG | - | chr2.2:53868840-53868859 | None:intergenic | 40.0% | |
TTATGCTAGATCCGTACTCT+TGG | + | chr2.2:53868983-53869002 | MS.gene071832:intron | 40.0% | |
! | ATGGTGTATGAATGGTGTTG+AGG | + | chr2.2:53867690-53867709 | MS.gene071832:intron | 40.0% |
! | GGATGAGAGAGATTTGGTAA+GGG | - | chr2.2:53866603-53866622 | None:intergenic | 40.0% |
! | TTTGGTAAGGGATTTTGCGT+TGG | - | chr2.2:53866591-53866610 | None:intergenic | 40.0% |
!! | GATTTAAGAGTACTTGTGGC+AGG | - | chr2.2:53868086-53868105 | None:intergenic | 40.0% |
!!! | CAATGGATTGTGCCTTTTTG+CGG | + | chr2.2:53866877-53866896 | MS.gene071832:CDS | 40.0% |
AAATCAGAGAGGGGAGATGA+GGG | + | chr2.2:53867205-53867224 | MS.gene071832:CDS | 45.0% | |
AAGATTGAGAGACCTCAAGC+TGG | + | chr2.2:53867912-53867931 | MS.gene071832:intron | 45.0% | |
ACAACACTACGAGAAAGCCA+CGG | + | chr2.2:53867126-53867145 | MS.gene071832:CDS | 45.0% | |
AGCAGGTCACCCATTCATAT+GGG | + | chr2.2:53867360-53867379 | MS.gene071832:intron | 45.0% | |
AGGGTTTGATCATTAGGGGT+TGG | + | chr2.2:53867476-53867495 | MS.gene071832:intron | 45.0% | |
ATTCATTGCGAATGGTCCAC+CGG | + | chr2.2:53866778-53866797 | MS.gene071832:CDS | 45.0% | |
CCACACAAGGTGATATGATG+AGG | - | chr2.2:53866995-53867014 | None:intergenic | 45.0% | |
CCGTATCAAGCATCATTCCT+AGG | - | chr2.2:53867045-53867064 | None:intergenic | 45.0% | |
CCTCATCATATCACCTTGTG+TGG | + | chr2.2:53866992-53867011 | MS.gene071832:CDS | 45.0% | |
CTGCTCAAGAGAAATCAGAG+AGG | + | chr2.2:53867194-53867213 | MS.gene071832:CDS | 45.0% | |
GAAAGAAAAGTGGTTGCCGA+AGG | + | chr2.2:53867426-53867445 | MS.gene071832:intron | 45.0% | |
GAAGGCTGTAAGGAGATTGA+TGG | + | chr2.2:53867747-53867766 | MS.gene071832:intron | 45.0% | |
GAGCAGAGATAGCATAGAGA+AGG | + | chr2.2:53867729-53867748 | MS.gene071832:intron | 45.0% | |
GAGTCGGAGATGATACAATC+CGG | - | chr2.2:53866800-53866819 | None:intergenic | 45.0% | |
GCATACCTTCTCCAAGAGTA+CGG | - | chr2.2:53868997-53869016 | None:intergenic | 45.0% | |
GCTCAAGAGAAATCAGAGAG+GGG | + | chr2.2:53867196-53867215 | MS.gene071832:CDS | 45.0% | |
GCTCCTTAAAGAACCCATTG+AGG | + | chr2.2:53866754-53866773 | MS.gene071832:CDS | 45.0% | |
GCTGTAAGGAGATTGATGGA+CGG | + | chr2.2:53867751-53867770 | MS.gene071832:intron | 45.0% | |
GGCGAAACCACGATGTTATT+AGG | - | chr2.2:53867981-53868000 | None:intergenic | 45.0% | |
GGGTTGTTCCTGAGAAGAAA+GGG | + | chr2.2:53867380-53867399 | MS.gene071832:intron | 45.0% | |
GGGTTTGATCATTAGGGGTT+GGG | + | chr2.2:53867477-53867496 | MS.gene071832:intron | 45.0% | |
GTGTGAAAGCGAATGAAGGA+GGG | - | chr2.2:53866632-53866651 | None:intergenic | 45.0% | |
GTTTGGAGAAAAAGCTGCAC+AGG | + | chr2.2:53867813-53867832 | MS.gene071832:intron | 45.0% | |
TAGATCCGTACTCTTGGAGA+AGG | + | chr2.2:53868989-53869008 | MS.gene071832:intron | 45.0% | |
TCATTGCAGATAGGACTGCA+GGG | + | chr2.2:53868602-53868621 | MS.gene071832:CDS | 45.0% | |
TGGGTTGTTCCTGAGAAGAA+AGG | + | chr2.2:53867379-53867398 | MS.gene071832:intron | 45.0% | |
TGTAGTCCACAAGGAGTTGT+AGG | + | chr2.2:53868831-53868850 | MS.gene071832:intron | 45.0% | |
! | AGTACTTGTGGCAGGTATTG+TGG | - | chr2.2:53868078-53868097 | None:intergenic | 45.0% |
! | AGTTCCAATGATAACGTGGC+CGG | + | chr2.2:53867591-53867610 | MS.gene071832:intron | 45.0% |
! | CGGATGAGAGAGATTTGGTA+AGG | - | chr2.2:53866604-53866623 | None:intergenic | 45.0% |
! | GTAAGGGATTTTGCGTTGGA+AGG | - | chr2.2:53866587-53866606 | None:intergenic | 45.0% |
! | GTACCCATGGGTTAATGACT+TGG | + | chr2.2:53866823-53866842 | MS.gene071832:CDS | 45.0% |
! | TGGGAGTTCCAATGATAACG+TGG | + | chr2.2:53867587-53867606 | MS.gene071832:intron | 45.0% |
! | TTCAGGAAGGCCAACTTGTT+GGG | - | chr2.2:53866669-53866688 | None:intergenic | 45.0% |
!!! | TGTTTTGAGGGTTTCCACGA+GGG | - | chr2.2:53866906-53866925 | None:intergenic | 45.0% |
!!! | TTGTTTTGAGGGTTTCCACG+AGG | - | chr2.2:53866907-53866926 | None:intergenic | 45.0% |
AACCGTAGAGGCTGTTAGTG+TGG | + | chr2.2:53867567-53867586 | MS.gene071832:intron | 50.0% | |
ACAAGTCCGAGGAATTGGAG+TGG | + | chr2.2:53867651-53867670 | MS.gene071832:intron | 50.0% | |
ACCACTTGGAAGATCCATCG+GGG | + | chr2.2:53866725-53866744 | MS.gene071832:CDS | 50.0% | |
ACCGTAGAGGCTGTTAGTGT+GGG | + | chr2.2:53867568-53867587 | MS.gene071832:intron | 50.0% | |
ATATTGAGCCACCCAGCAGT+GGG | + | chr2.2:53867514-53867533 | MS.gene071832:intron | 50.0% | |
ATGGATCTTCCAAGTGGTGG+TGG | - | chr2.2:53866723-53866742 | None:intergenic | 50.0% | |
CAACACTACGAGAAAGCCAC+GGG | + | chr2.2:53867127-53867146 | MS.gene071832:CDS | 50.0% | |
CACCACTTGGAAGATCCATC+GGG | + | chr2.2:53866724-53866743 | MS.gene071832:CDS | 50.0% | |
CAGCAGGTCACCCATTCATA+TGG | + | chr2.2:53867359-53867378 | MS.gene071832:intron | 50.0% | |
CATTGCAGATAGGACTGCAG+GGG | + | chr2.2:53868603-53868622 | MS.gene071832:CDS | 50.0% | |
CCACCACTTGGAAGATCCAT+CGG | + | chr2.2:53866723-53866742 | MS.gene071832:CDS | 50.0% | |
CGACTTCCACTCCAATTCCT+CGG | - | chr2.2:53867660-53867679 | None:intergenic | 50.0% | |
CGAGGAATTGGAGTGGAAGT+CGG | + | chr2.2:53867658-53867677 | MS.gene071832:intron | 50.0% | |
CGATGGATCTCTTGTCGTGT+TGG | + | chr2.2:53868515-53868534 | MS.gene071832:intron | 50.0% | |
CGGCCAAGTCATTAACCCAT+GGG | - | chr2.2:53866829-53866848 | None:intergenic | 50.0% | |
CTCATTGCAGATAGGACTGC+AGG | + | chr2.2:53868601-53868620 | MS.gene071832:CDS | 50.0% | |
CTTCAGGAAGGCCAACTTGT+TGG | - | chr2.2:53866670-53866689 | None:intergenic | 50.0% | |
CTTGTGTGGAAAACCGCCAA+AGG | + | chr2.2:53867006-53867025 | MS.gene071832:CDS | 50.0% | |
GAAATCAGAGAGGGGAGATG+AGG | + | chr2.2:53867204-53867223 | MS.gene071832:CDS | 50.0% | |
GACGGTGTGAAAGCGAATGA+AGG | - | chr2.2:53866636-53866655 | None:intergenic | 50.0% | |
GATTTATGACGCATTGCGGG+GGG | + | chr2.2:53867539-53867558 | MS.gene071832:intron | 50.0% | |
GCACAGGCTATTCAAGAAGG+TGG | + | chr2.2:53867829-53867848 | MS.gene071832:intron | 50.0% | |
GCTGCACAGGCTATTCAAGA+AGG | + | chr2.2:53867826-53867845 | MS.gene071832:intron | 50.0% | |
GGATTTATGACGCATTGCGG+GGG | + | chr2.2:53867538-53867557 | MS.gene071832:intron | 50.0% | |
GGGATTTATGACGCATTGCG+GGG | + | chr2.2:53867537-53867556 | MS.gene071832:intron | 50.0% | |
GGGGATTTATGACGCATTGC+GGG | + | chr2.2:53867536-53867555 | MS.gene071832:intron | 50.0% | |
GGGGGATTTATGACGCATTG+CGG | + | chr2.2:53867535-53867554 | MS.gene071832:intron | 50.0% | |
GGTCACAAGGTTTGGCATCT+CGG | + | chr2.2:53867148-53867167 | MS.gene071832:CDS | 50.0% | |
GGTGTGAAAGCGAATGAAGG+AGG | - | chr2.2:53866633-53866652 | None:intergenic | 50.0% | |
GTCATTAACCCATGGGTACG+TGG | - | chr2.2:53866822-53866841 | None:intergenic | 50.0% | |
TCATAAATCCCCCCACTGCT+GGG | - | chr2.2:53867528-53867547 | None:intergenic | 50.0% | |
TCCCACACTAACAGCCTCTA+CGG | - | chr2.2:53867572-53867591 | None:intergenic | 50.0% | |
TCGCTTCGCTCATTGCAGAT+AGG | + | chr2.2:53868593-53868612 | MS.gene071832:CDS | 50.0% | |
TCGGAGATGATACAATCCGG+TGG | - | chr2.2:53866797-53866816 | None:intergenic | 50.0% | |
TCGGCCAAGTCATTAACCCA+TGG | - | chr2.2:53866830-53866849 | None:intergenic | 50.0% | |
TGAACCGGCCACGTTATCAT+TGG | - | chr2.2:53867598-53867617 | None:intergenic | 50.0% | |
TGGAAGTCGGTGCAACAGAA+TGG | + | chr2.2:53867671-53867690 | MS.gene071832:intron | 50.0% | |
TGGATCTTCCAAGTGGTGGT+GGG | - | chr2.2:53866722-53866741 | None:intergenic | 50.0% | |
! | AGCGTCGGATGAGAGAGATT+TGG | - | chr2.2:53866609-53866628 | None:intergenic | 50.0% |
! | ATGATAACGTGGCCGGTTCA+TGG | + | chr2.2:53867598-53867617 | MS.gene071832:intron | 50.0% |
! | CTTTGGCGGTTTTCCACACA+AGG | - | chr2.2:53867008-53867027 | None:intergenic | 50.0% |
! | GGATTTTGCGTTGGAAGGAG+TGG | - | chr2.2:53866582-53866601 | None:intergenic | 50.0% |
! | GTAAGGAGATTGATGGACGG+TGG | + | chr2.2:53867754-53867773 | MS.gene071832:intron | 50.0% |
! | TCTCTGAGTTGAGCCAACTC+AGG | - | chr2.2:53867252-53867271 | None:intergenic | 50.0% |
! | TGGTGATGACTGTGACTTGC+TGG | - | chr2.2:53866562-53866581 | None:intergenic | 50.0% |
! | TGTCGTGTTGGTGCATCTGT+TGG | + | chr2.2:53868527-53868546 | MS.gene071832:intron | 50.0% |
!! | CAACAAGTTGGCCTTCCTGA+AGG | + | chr2.2:53866668-53866687 | MS.gene071832:CDS | 50.0% |
!! | CTGTTGGTGTCATTGTCCGT+CGG | + | chr2.2:53868543-53868562 | MS.gene071832:intron | 50.0% |
AACCCATGGGTACGTGGAGT+CGG | - | chr2.2:53866816-53866835 | None:intergenic | 55.0% | |
AAGCCACGGGTCACAAGGTT+TGG | + | chr2.2:53867140-53867159 | MS.gene071832:CDS | 55.0% | |
AGGCTACGTGCTCGTGAGTT+TGG | + | chr2.2:53867796-53867815 | MS.gene071832:intron | 55.0% | |
ATGAGCACGAGAGCCTGAGT+TGG | + | chr2.2:53867236-53867255 | MS.gene071832:intron | 55.0% | |
ATGCCAAACCTTGTGACCCG+TGG | - | chr2.2:53867146-53867165 | None:intergenic | 55.0% | |
CCGATGGATCTTCCAAGTGG+TGG | - | chr2.2:53866726-53866745 | None:intergenic | 55.0% | |
GACTTCCCCTCCCAACAAGT+TGG | + | chr2.2:53866656-53866675 | MS.gene071832:CDS | 55.0% | |
GATATTGAGCCACCCAGCAG+TGG | + | chr2.2:53867513-53867532 | MS.gene071832:intron | 55.0% | |
GTCATAAATCCCCCCACTGC+TGG | - | chr2.2:53867529-53867548 | None:intergenic | 55.0% | |
TATTGAGCCACCCAGCAGTG+GGG | + | chr2.2:53867515-53867534 | MS.gene071832:intron | 55.0% | |
TGTCATTGTCCGTCGGTGGT+GGG | + | chr2.2:53868550-53868569 | MS.gene071832:intron | 55.0% | |
TTGTTGGGAGGGGAAGTCGA+CGG | - | chr2.2:53866654-53866673 | None:intergenic | 55.0% | |
! | GGATCTTCCAAGTGGTGGTG+GGG | - | chr2.2:53866721-53866740 | None:intergenic | 55.0% |
!! | AGGAAGGCCAACTTGTTGGG+AGG | - | chr2.2:53866666-53866685 | None:intergenic | 55.0% |
!! | GAAGGCCAACTTGTTGGGAG+GGG | - | chr2.2:53866664-53866683 | None:intergenic | 55.0% |
!! | GGAAGGCCAACTTGTTGGGA+GGG | - | chr2.2:53866665-53866684 | None:intergenic | 55.0% |
!! | TGACTGTGACTTGCTGGCCA+CGG | - | chr2.2:53866556-53866575 | None:intergenic | 55.0% |
!! | TTGGTGTCATTGTCCGTCGG+TGG | + | chr2.2:53868546-53868565 | MS.gene071832:intron | 55.0% |
ATGTCCTGACCCACCACCGA+CGG | - | chr2.2:53868562-53868581 | None:intergenic | 60.0% | |
ATTGAGCCACCCAGCAGTGG+GGG | + | chr2.2:53867516-53867535 | MS.gene071832:intron | 60.0% | |
CAGATAGGACTGCAGGGGTG+TGG | + | chr2.2:53868608-53868627 | MS.gene071832:CDS | 60.0% | |
CCACGAGGGAGACCGCAAAA+AGG | - | chr2.2:53866892-53866911 | None:intergenic | 60.0% | |
CGAGAAAGCCACGGGTCACA+AGG | + | chr2.2:53867135-53867154 | MS.gene071832:CDS | 60.0% | |
CTCCGACTCCACGTACCCAT+GGG | + | chr2.2:53866811-53866830 | MS.gene071832:CDS | 60.0% | |
GCCCCGATGGATCTTCCAAG+TGG | - | chr2.2:53866729-53866748 | None:intergenic | 60.0% | |
TAAATCCCCCCACTGCTGGG+TGG | - | chr2.2:53867525-53867544 | None:intergenic | 60.0% | |
TCTCCGACTCCACGTACCCA+TGG | + | chr2.2:53866810-53866829 | MS.gene071832:CDS | 60.0% | |
! | CCTTTTTGCGGTCTCCCTCG+TGG | + | chr2.2:53866889-53866908 | MS.gene071832:CDS | 60.0% |
! | GCGAATGAAGGAGGGAGCGT+CGG | - | chr2.2:53866624-53866643 | None:intergenic | 60.0% |
! | GTGTCATTGTCCGTCGGTGG+TGG | + | chr2.2:53868549-53868568 | MS.gene071832:intron | 60.0% |
!! | GGTGGTGGGTCAGGACATGT+CGG | + | chr2.2:53868564-53868583 | MS.gene071832:intron | 60.0% |
!! | TAAGGAGCATTGCGCCCCGA+TGG | - | chr2.2:53866742-53866761 | None:intergenic | 60.0% |
CATTAGGGGTTGGGCCCCAC+AGG | + | chr2.2:53867486-53867505 | MS.gene071832:intron | 65.0% | |
CCACTGACCCCACCACCACT+TGG | + | chr2.2:53866711-53866730 | MS.gene071832:CDS | 65.0% | |
CGGGGGGAACTCAACCGTAG+AGG | + | chr2.2:53867555-53867574 | MS.gene071832:intron | 65.0% | |
GCTTGCGCGCTAGAAGCAGC+AGG | + | chr2.2:53867343-53867362 | MS.gene071832:intron | 65.0% | |
GGTGGGTCAGGACATGTCGG+TGG | + | chr2.2:53868567-53868586 | MS.gene071832:intron | 65.0% | |
TTGAGCCACCCAGCAGTGGG+GGG | + | chr2.2:53867517-53867536 | MS.gene071832:intron | 65.0% | |
!! | AGTGGTGGTGGGGTCAGTGG+TGG | - | chr2.2:53866711-53866730 | None:intergenic | 65.0% |
!! | CCAAGTGGTGGTGGGGTCAG+TGG | - | chr2.2:53866714-53866733 | None:intergenic | 65.0% |
!! | TTGTCCGTCGGTGGTGGGTC+AGG | + | chr2.2:53868555-53868574 | MS.gene071832:intron | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.2 | gene | 53866542 | 53869150 | 53866542 | ID=MS.gene071832 |
chr2.2 | mRNA | 53866542 | 53869150 | 53866542 | ID=MS.gene071832.t1;Parent=MS.gene071832 |
chr2.2 | exon | 53866542 | 53867231 | 53866542 | ID=MS.gene071832.t1.exon1;Parent=MS.gene071832.t1 |
chr2.2 | CDS | 53866542 | 53867231 | 53866542 | ID=cds.MS.gene071832.t1;Parent=MS.gene071832.t1 |
chr2.2 | exon | 53868577 | 53868629 | 53868577 | ID=MS.gene071832.t1.exon2;Parent=MS.gene071832.t1 |
chr2.2 | CDS | 53868577 | 53868629 | 53868577 | ID=cds.MS.gene071832.t1;Parent=MS.gene071832.t1 |
chr2.2 | exon | 53869066 | 53869150 | 53869066 | ID=MS.gene071832.t1.exon3;Parent=MS.gene071832.t1 |
chr2.2 | CDS | 53869066 | 53869150 | 53869066 | ID=cds.MS.gene071832.t1;Parent=MS.gene071832.t1 |
Gene Sequence |
Protein sequence |