Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene072109.t1 | XP_003592868.1 | 98.8 | 987 | 12 | 0 | 1 | 987 | 1 | 987 | 0.00E+00 | 1956.8 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene072109.t1 | Q9LTB2 | 73.8 | 983 | 246 | 5 | 7 | 989 | 6 | 976 | 0.0e+00 | 1472.6 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene072109.t1 | G7IL50 | 98.8 | 987 | 12 | 0 | 1 | 987 | 1 | 987 | 0.0e+00 | 1956.8 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049180 | MS.gene072109 | 0.812146 | 4.91E-51 | -1.69E-46 |
MS.gene049209 | MS.gene072109 | 0.881168 | 3.00E-70 | -1.69E-46 |
MS.gene050817 | MS.gene072109 | 0.842529 | 2.45E-58 | -1.69E-46 |
MS.gene054585 | MS.gene072109 | 0.825201 | 5.33E-54 | -1.69E-46 |
MS.gene05477 | MS.gene072109 | 0.812336 | 4.46E-51 | -1.69E-46 |
MS.gene057213 | MS.gene072109 | 0.802768 | 4.80E-49 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene072109.t1 | MTR_2g005110 | 98.784 | 987 | 12 | 0 | 1 | 987 | 1 | 987 | 0.0 | 2012 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene072109.t1 | AT5G49810 | 73.754 | 983 | 246 | 5 | 7 | 989 | 6 | 976 | 0.0 | 1502 |
Find 0 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
16926 | gene | 27347 | 36941 | 27347 | ID=MS.gene072109 |
16926 | mRNA | 27347 | 36941 | 27347 | ID=MS.gene072109.t1;Parent=MS.gene072109 |
16926 | exon | 36704 | 36941 | 36704 | ID=MS.gene072109.t1.exon1;Parent=MS.gene072109.t1 |
16926 | CDS | 36704 | 36941 | 36704 | ID=cds.MS.gene072109.t1;Parent=MS.gene072109.t1 |
16926 | exon | 36437 | 36630 | 36437 | ID=MS.gene072109.t1.exon2;Parent=MS.gene072109.t1 |
16926 | CDS | 36437 | 36630 | 36437 | ID=cds.MS.gene072109.t1;Parent=MS.gene072109.t1 |
16926 | exon | 36154 | 36360 | 36154 | ID=MS.gene072109.t1.exon3;Parent=MS.gene072109.t1 |
16926 | CDS | 36154 | 36360 | 36154 | ID=cds.MS.gene072109.t1;Parent=MS.gene072109.t1 |
16926 | exon | 35231 | 35326 | 35231 | ID=MS.gene072109.t1.exon4;Parent=MS.gene072109.t1 |
16926 | CDS | 35231 | 35326 | 35231 | ID=cds.MS.gene072109.t1;Parent=MS.gene072109.t1 |
16926 | exon | 34761 | 34949 | 34761 | ID=MS.gene072109.t1.exon5;Parent=MS.gene072109.t1 |
16926 | CDS | 34761 | 34949 | 34761 | ID=cds.MS.gene072109.t1;Parent=MS.gene072109.t1 |
16926 | exon | 34497 | 34685 | 34497 | ID=MS.gene072109.t1.exon6;Parent=MS.gene072109.t1 |
16926 | CDS | 34497 | 34685 | 34497 | ID=cds.MS.gene072109.t1;Parent=MS.gene072109.t1 |
16926 | exon | 34171 | 34407 | 34171 | ID=MS.gene072109.t1.exon7;Parent=MS.gene072109.t1 |
16926 | CDS | 34171 | 34407 | 34171 | ID=cds.MS.gene072109.t1;Parent=MS.gene072109.t1 |
16926 | exon | 32465 | 32599 | 32465 | ID=MS.gene072109.t1.exon8;Parent=MS.gene072109.t1 |
16926 | CDS | 32465 | 32599 | 32465 | ID=cds.MS.gene072109.t1;Parent=MS.gene072109.t1 |
16926 | exon | 31314 | 31634 | 31314 | ID=MS.gene072109.t1.exon9;Parent=MS.gene072109.t1 |
16926 | CDS | 31314 | 31634 | 31314 | ID=cds.MS.gene072109.t1;Parent=MS.gene072109.t1 |
16926 | exon | 31022 | 31201 | 31022 | ID=MS.gene072109.t1.exon10;Parent=MS.gene072109.t1 |
16926 | CDS | 31022 | 31201 | 31022 | ID=cds.MS.gene072109.t1;Parent=MS.gene072109.t1 |
16926 | exon | 27347 | 28348 | 27347 | ID=MS.gene072109.t1.exon11;Parent=MS.gene072109.t1 |
16926 | CDS | 27347 | 28348 | 27347 | ID=cds.MS.gene072109.t1;Parent=MS.gene072109.t1 |
Gene Sequence |
Protein sequence |