Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050817.t1 | XP_003626104.2 | 99.5 | 957 | 5 | 0 | 1 | 957 | 168 | 1124 | 0.00E+00 | 1781.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050817.t1 | Q54K14 | 21.0 | 877 | 482 | 27 | 11 | 824 | 311 | 1039 | 3.5e-23 | 112.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050817.t1 | G7KVH9 | 99.5 | 957 | 5 | 0 | 1 | 957 | 168 | 1124 | 0.0e+00 | 1781.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049180 | MS.gene050817 | 0.829907 | 3.96E-55 | -1.69E-46 |
| MS.gene049209 | MS.gene050817 | 0.835288 | 1.83E-56 | -1.69E-46 |
| MS.gene050816 | MS.gene050817 | 0.843062 | 1.77E-58 | -1.69E-46 |
| MS.gene050817 | MS.gene050818 | 0.897077 | 1.99E-76 | -1.69E-46 |
| MS.gene050817 | MS.gene050894 | 0.834279 | 3.28E-56 | -1.69E-46 |
| MS.gene050817 | MS.gene052676 | 0.815089 | 1.11E-51 | -1.69E-46 |
| MS.gene050817 | MS.gene052678 | 0.831262 | 1.84E-55 | -1.69E-46 |
| MS.gene050817 | MS.gene054585 | 0.85035 | 1.80E-60 | -1.69E-46 |
| MS.gene050817 | MS.gene060077 | 0.829537 | 4.87E-55 | -1.69E-46 |
| MS.gene050817 | MS.gene06134 | 0.821784 | 3.36E-53 | -1.69E-46 |
| MS.gene050817 | MS.gene06297 | 0.843637 | 1.24E-58 | -1.69E-46 |
| MS.gene050817 | MS.gene063145 | 0.809078 | 2.26E-50 | -1.69E-46 |
| MS.gene050817 | MS.gene067773 | 0.842475 | 2.53E-58 | -1.69E-46 |
| MS.gene050817 | MS.gene069968 | 0.814697 | 1.35E-51 | -1.69E-46 |
| MS.gene050817 | MS.gene070003 | 0.830317 | 3.14E-55 | -1.69E-46 |
| MS.gene050817 | MS.gene072047 | 0.839768 | 1.30E-57 | -1.69E-46 |
| MS.gene050817 | MS.gene072109 | 0.842529 | 2.45E-58 | -1.69E-46 |
| MS.gene050817 | MS.gene072615 | 0.847734 | 9.59E-60 | -1.69E-46 |
| MS.gene050817 | MS.gene074505 | 0.822588 | 2.19E-53 | -1.69E-46 |
| MS.gene050817 | MS.gene08912 | 0.818422 | 1.98E-52 | -1.69E-46 |
| MS.gene050817 | MS.gene08914 | 0.827001 | 1.99E-54 | -1.69E-46 |
| MS.gene050817 | MS.gene09078 | 0.823735 | 1.18E-53 | -1.69E-46 |
| MS.gene050817 | MS.gene26731 | 0.870751 | 1.15E-66 | -1.69E-46 |
| MS.gene050817 | MS.gene28610 | 0.947041 | 1.45E-105 | -1.69E-46 |
| MS.gene050817 | MS.gene28612 | 0.902455 | 9.53E-79 | -1.69E-46 |
| MS.gene050817 | MS.gene29353 | 0.84729 | 1.27E-59 | -1.69E-46 |
| MS.gene050817 | MS.gene33526 | 0.837468 | 5.11E-57 | -1.69E-46 |
| MS.gene050817 | MS.gene34720 | 0.820972 | 5.17E-53 | -1.69E-46 |
| MS.gene050817 | MS.gene35564 | 0.819379 | 1.20E-52 | -1.69E-46 |
| MS.gene050817 | MS.gene38302 | 0.82975 | 4.32E-55 | -1.69E-46 |
| MS.gene050817 | MS.gene39937 | 0.816357 | 5.76E-52 | -1.69E-46 |
| MS.gene050817 | MS.gene40337 | 0.8694 | 3.19E-66 | -1.69E-46 |
| MS.gene050817 | MS.gene41628 | 0.817927 | 2.56E-52 | -1.69E-46 |
| MS.gene050817 | MS.gene41692 | 0.841743 | 3.95E-58 | -1.69E-46 |
| MS.gene050817 | MS.gene42528 | 0.826856 | 2.16E-54 | -1.69E-46 |
| MS.gene050817 | MS.gene49370 | 0.829068 | 6.33E-55 | -1.69E-46 |
| MS.gene050817 | MS.gene49908 | 0.826032 | 3.39E-54 | -1.69E-46 |
| MS.gene050817 | MS.gene50553 | 0.827103 | 1.88E-54 | -1.69E-46 |
| MS.gene050817 | MS.gene53779 | 0.824731 | 6.88E-54 | -1.69E-46 |
| MS.gene050817 | MS.gene57288 | 0.820923 | 5.31E-53 | -1.69E-46 |
| MS.gene050817 | MS.gene61873 | 0.805788 | 1.13E-49 | -1.69E-46 |
| MS.gene050817 | MS.gene67231 | 0.852937 | 3.33E-61 | -1.69E-46 |
| MS.gene050817 | MS.gene68200 | 0.810454 | 1.14E-50 | -1.69E-46 |
| MS.gene050817 | MS.gene68219 | 0.828459 | 8.89E-55 | -1.69E-46 |
| MS.gene050817 | MS.gene68793 | 0.804953 | 1.69E-49 | -1.69E-46 |
| MS.gene050817 | MS.gene74235 | 0.802404 | 5.70E-49 | -1.69E-46 |
| MS.gene050817 | MS.gene75808 | 0.822279 | 2.58E-53 | -1.69E-46 |
| MS.gene050817 | MS.gene75907 | 0.805982 | 1.03E-49 | -1.69E-46 |
| MS.gene050817 | MS.gene78187 | 0.807594 | 4.68E-50 | -1.69E-46 |
| MS.gene050817 | MS.gene82037 | 0.890415 | 1.01E-73 | -1.69E-46 |
| MS.gene050817 | MS.gene82544 | 0.866447 | 2.83E-65 | -1.69E-46 |
| MS.gene050817 | MS.gene82941 | 0.822823 | 1.93E-53 | -1.69E-46 |
| MS.gene050817 | MS.gene90121 | 0.841943 | 3.50E-58 | -1.69E-46 |
| MS.gene050817 | MS.gene90778 | 0.837462 | 5.12E-57 | -1.69E-46 |
| MS.gene050817 | MS.gene92817 | 0.832857 | 7.44E-56 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 243 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATACCCTCAGTTTCTTATT+AGG | 0.146986 | 7.1:+4008215 | None:intergenic |
| CCTGCCACAGTGTGGCTTCT+TGG | 0.158323 | 7.1:-4008495 | MS.gene050817:CDS |
| ATGGGACACGGTCTCCTTTA+AGG | 0.178355 | 7.1:-4008643 | MS.gene050817:intron |
| TCATATGTTTGCAGGTATTT+AGG | 0.198111 | 7.1:-4006906 | MS.gene050817:intron |
| TTTCAGGCTCTTCTGGTTTC+GGG | 0.211472 | 7.1:-4009153 | MS.gene050817:intron |
| ACACTGTGGCAGGCCAATTT+TGG | 0.221087 | 7.1:+4008505 | None:intergenic |
| GGTTGGGTTTCAGGCTCTTC+TGG | 0.223591 | 7.1:-4009160 | MS.gene050817:intron |
| GTGATGGATTGCTCATAATT+TGG | 0.228382 | 7.1:-4009125 | MS.gene050817:CDS |
| CAGCCACATCTTGTTGCTAT+TGG | 0.232135 | 7.1:-4007823 | MS.gene050817:CDS |
| GAACTTCCCTTGGGAATTAT+AGG | 0.235093 | 7.1:+4006738 | None:intergenic |
| GTTTCAGGCTCTTCTGGTTT+CGG | 0.246787 | 7.1:-4009154 | MS.gene050817:intron |
| GAAATTCGCAAAAGAGTTCT+TGG | 0.260127 | 7.1:-4000928 | MS.gene050817:CDS |
| GTTCTTTCTGTGAGCAGTTC+AGG | 0.263386 | 7.1:-4007517 | MS.gene050817:CDS |
| TGGTCCCAAGCAGTCCATTC+TGG | 0.264020 | 7.1:+4004540 | None:intergenic |
| GACGGTCCTCTTGTGGCTTT+TGG | 0.273073 | 7.1:-4009761 | MS.gene050817:CDS |
| ATACCCTCAGTTTCTTATTA+GGG | 0.283891 | 7.1:+4008216 | None:intergenic |
| TATAAAGCCAGTTCCAAAAT+TGG | 0.291327 | 7.1:-4008518 | MS.gene050817:CDS |
| GCAGCAGCTGCAGCTGCTGC+TGG | 0.294264 | 7.1:-4006678 | MS.gene050817:CDS |
| CAGATAAGACATTAGCTATA+TGG | 0.304586 | 7.1:-4008662 | MS.gene050817:CDS |
| TGTCGATGTCTTGCTGCTTA+TGG | 0.312448 | 7.1:-4001451 | MS.gene050817:CDS |
| CTCTTGCTTGAAGTCCTTCA+TGG | 0.315401 | 7.1:-4009585 | MS.gene050817:CDS |
| ATGAGTAATAGCCGGGATAT+TGG | 0.317519 | 7.1:-4001059 | MS.gene050817:CDS |
| GATATTGGGCACGATGGTAC+TGG | 0.319051 | 7.1:-4001044 | MS.gene050817:CDS |
| AGATGTAGTTGAAGGTGTTC+AGG | 0.321407 | 7.1:-4000958 | MS.gene050817:CDS |
| CCATCAGCTCTAGATTGTTT+TGG | 0.325688 | 7.1:+4002489 | None:intergenic |
| CTGCAGGCTGGAGTTTGATT+TGG | 0.329519 | 7.1:-4001129 | MS.gene050817:intron |
| AAGTCCTTCATGGCAGCTTC+AGG | 0.343158 | 7.1:-4009575 | MS.gene050817:CDS |
| TCGTGACAGATTTGCTATAC+TGG | 0.343161 | 7.1:-4006784 | MS.gene050817:CDS |
| GTTGCTATTGGAACCAATAT+TGG | 0.343576 | 7.1:-4007811 | MS.gene050817:CDS |
| AGCACCAATACATACCTTAA+AGG | 0.347234 | 7.1:+4008629 | None:intergenic |
| GCAGATAACAACACCAATAT+TGG | 0.347249 | 7.1:+4007798 | None:intergenic |
| GCTGCAGCTGGATCAGTTAA+AGG | 0.351981 | 7.1:-4000840 | MS.gene050817:CDS |
| TTTCCCTGCTTGACAGGTAA+TGG | 0.353036 | 7.1:+4007580 | None:intergenic |
| TTCATTTCAGCATGCTCCTT+CGG | 0.357916 | 7.1:-4002532 | MS.gene050817:CDS |
| ATCCAGTCTATGCCATTATC+AGG | 0.369025 | 7.1:-4005837 | MS.gene050817:CDS |
| GAGAAAGCATGGCAGGATAC+TGG | 0.378910 | 7.1:-3999049 | MS.gene050817:CDS |
| CAGAAGAAAGAATATCATTA+AGG | 0.380973 | 7.1:-4003279 | MS.gene050817:CDS |
| AAGATATGACTATGTATTGT+TGG | 0.384764 | 7.1:+4004490 | None:intergenic |
| ACAGAAAAGTAAGGAATATC+TGG | 0.385954 | 7.1:+4006873 | None:intergenic |
| AACAGCTCCTTGTCAGAAAC+AGG | 0.388078 | 7.1:-4007628 | MS.gene050817:CDS |
| TTCCATCATCCAACATAATT+CGG | 0.388734 | 7.1:+4006634 | None:intergenic |
| ACACACCTCTTTGATATTCC+AGG | 0.390212 | 7.1:+4001234 | None:intergenic |
| GGCACATGACGGCGGGGTTG+TGG | 0.393623 | 7.1:-4008739 | MS.gene050817:CDS |
| ACCACAACAAGAGGCCCAAC+CGG | 0.393627 | 7.1:+4002357 | None:intergenic |
| TGAGTAATAGCCGGGATATT+GGG | 0.393707 | 7.1:-4001058 | MS.gene050817:CDS |
| CTCAAAACTTCCAGCTATAC+AGG | 0.400917 | 7.1:-4005734 | MS.gene050817:intron |
| CTGCTTCCATAACCTGATAA+TGG | 0.403037 | 7.1:+4005825 | None:intergenic |
| TTGCATGGAGGGGCACTGCT+TGG | 0.403387 | 7.1:-4005918 | MS.gene050817:CDS |
| GGGGTAGGTAGGGGAGCAAC+AGG | 0.404564 | 7.1:+4007751 | None:intergenic |
| TCTATGCCATTATCAGGTTA+TGG | 0.412474 | 7.1:-4005831 | MS.gene050817:CDS |
| CTGCTGTATTTGTAATAGAA+AGG | 0.412544 | 7.1:-4007708 | MS.gene050817:CDS |
| AGCACAATTTATGCTAGGAA+TGG | 0.416057 | 7.1:-4001283 | MS.gene050817:CDS |
| ATAAATTTCACCTGTATAGC+TGG | 0.418298 | 7.1:+4005724 | None:intergenic |
| GCACCGGAGGCAACTGTTTG+TGG | 0.418498 | 7.1:-4004403 | MS.gene050817:CDS |
| CACCAACGCCAGATCTATAA+AGG | 0.419157 | 7.1:+4009783 | None:intergenic |
| AGGTCATTGGTTTGCATGGA+GGG | 0.419161 | 7.1:-4005929 | MS.gene050817:CDS |
| CTTTCTTCTGTAGTAGATTG+AGG | 0.420013 | 7.1:+4003292 | None:intergenic |
| TCTTGTTGTGGTCGGTGTTA+AGG | 0.425751 | 7.1:-4002346 | MS.gene050817:CDS |
| ATGGAGTTCCTTTATAGATC+TGG | 0.426366 | 7.1:-4009791 | MS.gene050817:CDS |
| GCATTGCGCCTTGCAAATCA+TGG | 0.426731 | 7.1:-4000786 | MS.gene050817:CDS |
| GAAATAGCTGTAGCAGCAAT+AGG | 0.426838 | 7.1:+4005864 | None:intergenic |
| AACCTAATCACGCTTGGCTT+GGG | 0.431062 | 7.1:-3999121 | MS.gene050817:CDS |
| CATATGCGACTAGTGCTGTT+TGG | 0.432824 | 7.1:-4004425 | MS.gene050817:CDS |
| GTGTTAAGGATGGAGTTCTT+TGG | 0.432851 | 7.1:-4002332 | MS.gene050817:CDS |
| GGGCACGATGGTACTGGGCT+GGG | 0.434059 | 7.1:-4001038 | MS.gene050817:CDS |
| ATTCCATGCAGCTTGCTAGA+AGG | 0.434384 | 7.1:-4009634 | MS.gene050817:intron |
| CAACCTAATCACGCTTGGCT+TGG | 0.434812 | 7.1:-3999122 | MS.gene050817:CDS |
| CTGTCTACAAGGTCAGTGAT+TGG | 0.439179 | 7.1:-4006854 | MS.gene050817:CDS |
| GCAGGTATTTAGGAATCGTT+TGG | 0.439695 | 7.1:-4006896 | MS.gene050817:intron |
| CTCAGCCAGAATGGACTGCT+TGG | 0.443742 | 7.1:-4004545 | MS.gene050817:CDS |
| TGGGCACGATGGTACTGGGC+TGG | 0.446155 | 7.1:-4001039 | MS.gene050817:CDS |
| TGCTTCTTTCCCTGCTTGAC+AGG | 0.446324 | 7.1:+4007574 | None:intergenic |
| GAGTATGAATCATGAGGAAC+AGG | 0.446528 | 7.1:+4007541 | None:intergenic |
| CTGGTTTCGGGTGCTAGTGA+TGG | 0.447641 | 7.1:-4009141 | MS.gene050817:CDS |
| GAGTTCTTTGGCTAATTGAC+AGG | 0.448045 | 7.1:-4002320 | MS.gene050817:intron |
| GCACAATTTATGCTAGGAAT+GGG | 0.449349 | 7.1:-4001282 | MS.gene050817:CDS |
| ACTATCTGATGGGGTAGGTA+GGG | 0.449390 | 7.1:+4007741 | None:intergenic |
| ATGCTGTTAGTGCAGTAAAA+TGG | 0.453501 | 7.1:-4001426 | MS.gene050817:intron |
| AAGACATCGACAGCGAATAC+CGG | 0.456528 | 7.1:+4001462 | None:intergenic |
| GTCCCAAGCCAAGCGTGATT+AGG | 0.457067 | 7.1:+3999119 | None:intergenic |
| TGGGAGACATTTCAGCCTGT+GGG | 0.458762 | 7.1:-4004579 | MS.gene050817:CDS |
| ACGGAAGCACTTCATTTGCC+TGG | 0.463828 | 7.1:-4001252 | MS.gene050817:CDS |
| AAGCACAATACTCGACGGTT+TGG | 0.466091 | 7.1:+4004520 | None:intergenic |
| AGGTACACTGGAGGTCATAA+AGG | 0.466461 | 7.1:-4009614 | MS.gene050817:CDS |
| CTGAAGAGGTTAGCTGCAGC+TGG | 0.467189 | 7.1:-4000852 | MS.gene050817:CDS |
| TTTGCTGCAGGTGTATTGTA+TGG | 0.469308 | 7.1:-4007860 | MS.gene050817:intron |
| TTGGCTCTAATTACAGTTGA+AGG | 0.469878 | 7.1:-4003316 | MS.gene050817:CDS |
| TGCTGTATTTGTAATAGAAA+GGG | 0.471695 | 7.1:-4007707 | MS.gene050817:CDS |
| AGATAAGACATTAGCTATAT+GGG | 0.473469 | 7.1:-4008661 | MS.gene050817:CDS |
| CTTTACAAGGTCATGAATTG+AGG | 0.474786 | 7.1:-4000815 | MS.gene050817:CDS |
| GCTCCTCAGCTAATTACAAT+TGG | 0.477705 | 7.1:-4008687 | MS.gene050817:CDS |
| TGACACAGGTTAGAATATCA+AGG | 0.478884 | 7.1:+4008452 | None:intergenic |
| CGCTGCAGATGCTACAGCAC+AGG | 0.479021 | 7.1:-4000895 | MS.gene050817:CDS |
| CCTATTCTAGGTGGTTCGAT+TGG | 0.479406 | 7.1:-4002556 | MS.gene050817:intron |
| TTGGGAGACATTTCAGCCTG+TGG | 0.480746 | 7.1:-4004580 | MS.gene050817:CDS |
| CTCTACTTCCTCAGCCAGAA+TGG | 0.481221 | 7.1:-4004554 | MS.gene050817:CDS |
| CTCCCAGGTATCTATATTGT+GGG | 0.482317 | 7.1:+4004460 | None:intergenic |
| GAGCTGATGGTGACGACTCA+TGG | 0.482770 | 7.1:-4002476 | MS.gene050817:CDS |
| TACTATCTGATGGGGTAGGT+AGG | 0.482921 | 7.1:+4007740 | None:intergenic |
| CCAAGAAGCCACACTGTGGC+AGG | 0.482982 | 7.1:+4008495 | None:intergenic |
| CTATCTGATGGGGTAGGTAG+GGG | 0.484183 | 7.1:+4007742 | None:intergenic |
| GCATCTAGGCACATGACGGC+GGG | 0.484753 | 7.1:-4008746 | MS.gene050817:intron |
| GAAGTGCCAGGCTTCTCGCA+TGG | 0.485066 | 7.1:-4006815 | MS.gene050817:CDS |
| TCCGGTTGGGCCTCTTGTTG+TGG | 0.485814 | 7.1:-4002358 | MS.gene050817:CDS |
| GTAGGTAGGGGAGCAACAGG+TGG | 0.488754 | 7.1:+4007754 | None:intergenic |
| TGGAGCAGAAACGTCCGGTT+GGG | 0.489410 | 7.1:-4002371 | MS.gene050817:CDS |
| TGAACCATTACCTGTCAAGC+AGG | 0.494460 | 7.1:-4007584 | MS.gene050817:CDS |
| AGTTGAGCTTTCTAGAGTGA+TGG | 0.494949 | 7.1:-4008715 | MS.gene050817:CDS |
| TCAGCCAGAATGGACTGCTT+GGG | 0.494971 | 7.1:-4004544 | MS.gene050817:CDS |
| TGTTCAAGTCCGAATTATGT+TGG | 0.495823 | 7.1:-4006643 | MS.gene050817:CDS |
| GGTCATTGGTTTGCATGGAG+GGG | 0.497803 | 7.1:-4005928 | MS.gene050817:CDS |
| GATGTAGTTGAAGGTGTTCA+GGG | 0.498781 | 7.1:-4000957 | MS.gene050817:CDS |
| TCAAACAGGGCAAGTAGGCT+TGG | 0.498847 | 7.1:-4001327 | MS.gene050817:intron |
| TATAGATCTGGCGTTGGTGA+CGG | 0.499135 | 7.1:-4009779 | MS.gene050817:CDS |
| ATAAACAACCTAATCACGCT+TGG | 0.500648 | 7.1:-3999127 | MS.gene050817:CDS |
| TTCTTACCATGAGTAATAGC+CGG | 0.503075 | 7.1:-4001067 | MS.gene050817:CDS |
| TCTTACCATGAGTAATAGCC+GGG | 0.504763 | 7.1:-4001066 | MS.gene050817:CDS |
| CAAACAGCACTAGTCGCATA+TGG | 0.507974 | 7.1:+4004426 | None:intergenic |
| CCACATATTCTGCTCTCACT+AGG | 0.510622 | 7.1:-4008283 | MS.gene050817:CDS |
| GAATGCTCTCTACTATCTGA+TGG | 0.512710 | 7.1:+4007730 | None:intergenic |
| ATAATTTGGAGTGCTGATCA+TGG | 0.513470 | 7.1:-4009111 | MS.gene050817:CDS |
| GTCCGAATTATGTTGGATGA+TGG | 0.513836 | 7.1:-4006636 | MS.gene050817:CDS |
| TCTTTCAATGATTACATGGA+AGG | 0.517791 | 7.1:-4009714 | MS.gene050817:intron |
| ATGGTTCAAAAGCATCTCCC+TGG | 0.518104 | 7.1:+4007599 | None:intergenic |
| GAACATCAAATATGCTAATG+AGG | 0.519478 | 7.1:-4006614 | MS.gene050817:CDS |
| CAGGTTAGAATATCAAGGTT+CGG | 0.521517 | 7.1:+4008457 | None:intergenic |
| GAAATAGCGGTTGGTGGAGG+AGG | 0.521857 | 7.1:-4002423 | MS.gene050817:CDS |
| CTCGCCTGAAGCTGCCATGA+AGG | 0.523060 | 7.1:+4009571 | None:intergenic |
| CGACTAGTGCTGTTTGGCAC+CGG | 0.523385 | 7.1:-4004419 | MS.gene050817:CDS |
| TCTCCCAGGTATCTATATTG+TGG | 0.523820 | 7.1:+4004459 | None:intergenic |
| AGTATCCCATGCGAGAAGCC+TGG | 0.523887 | 7.1:+4006809 | None:intergenic |
| CTAACCTCTTCAGAGCTTCA+CGG | 0.524329 | 7.1:+4000862 | None:intergenic |
| GAGCTGTTATTTCCGAGTGA+TGG | 0.524352 | 7.1:+4007643 | None:intergenic |
| GGGTCTTCCTGTTTCTGACA+AGG | 0.524676 | 7.1:+4007621 | None:intergenic |
| GATGCTTACTCAATAGTAGT+TGG | 0.524936 | 7.1:+4004375 | None:intergenic |
| AGACATCGACAGCGAATACC+GGG | 0.525157 | 7.1:+4001463 | None:intergenic |
| GTTGAGCTTTCTAGAGTGAT+GGG | 0.525416 | 7.1:-4008714 | MS.gene050817:CDS |
| GAGTTCTTTCAATGATTACA+TGG | 0.526385 | 7.1:-4009718 | MS.gene050817:CDS |
| TCAGTTAAAGGTGCTTTACA+AGG | 0.528069 | 7.1:-4000828 | MS.gene050817:CDS |
| GCGCCCACAATATAGATACC+TGG | 0.528122 | 7.1:-4004463 | MS.gene050817:CDS |
| CCTAGTGAGAGCAGAATATG+TGG | 0.528222 | 7.1:+4008283 | None:intergenic |
| GATTTAGCACAATTTATGCT+AGG | 0.528425 | 7.1:-4001288 | MS.gene050817:CDS |
| ATATTGGGCACGATGGTACT+GGG | 0.529168 | 7.1:-4001043 | MS.gene050817:CDS |
| TTGTTGACTCTGGAAGTGCC+AGG | 0.529575 | 7.1:-4006827 | MS.gene050817:CDS |
| TAGGTCATTGGTTTGCATGG+AGG | 0.530097 | 7.1:-4005930 | MS.gene050817:CDS |
| CCAAAACAATCTAGAGCTGA+TGG | 0.530123 | 7.1:-4002489 | MS.gene050817:CDS |
| TCCGATGGAGCAGAAACGTC+CGG | 0.531504 | 7.1:-4002376 | MS.gene050817:CDS |
| TTGCCACAAACAGTTGCCTC+CGG | 0.540164 | 7.1:+4004400 | None:intergenic |
| ATGGCAGGATACTGGAATGA+TGG | 0.541037 | 7.1:-3999041 | MS.gene050817:CDS |
| ACCGGACGTTTCTGCTCCAT+CGG | 0.542874 | 7.1:+4002375 | None:intergenic |
| TTGGGAATTATAGGAATTCG+AGG | 0.543332 | 7.1:+4006747 | None:intergenic |
| AACCTGATAATGGCATAGAC+TGG | 0.543681 | 7.1:+4005835 | None:intergenic |
| ATTAAGGCCACCGATGCTGC+AGG | 0.544573 | 7.1:-4003263 | MS.gene050817:intron |
| AGTGAAATAGCGGTTGGTGG+AGG | 0.545934 | 7.1:-4002426 | MS.gene050817:CDS |
| GCCTTATCTTTGAGTCATCC+CGG | 0.546193 | 7.1:-4001481 | MS.gene050817:CDS |
| AATATCAGAGCATGGAGAGT+TGG | 0.549147 | 7.1:-4003335 | MS.gene050817:CDS |
| TGGTTCAAAAGCATCTCCCT+GGG | 0.549450 | 7.1:+4007600 | None:intergenic |
| TCGAATTCCTATAATTCCCA+AGG | 0.550061 | 7.1:-4006745 | MS.gene050817:CDS |
| TAATCACGCTTGGCTTGGGA+CGG | 0.550062 | 7.1:-3999117 | MS.gene050817:CDS |
| GGGAGACATTTCAGCCTGTG+GGG | 0.550620 | 7.1:-4004578 | MS.gene050817:CDS |
| CAAGCAGTCCATTCTGGCTG+AGG | 0.551410 | 7.1:+4004546 | None:intergenic |
| GATAGGAAAGGTGGCACCGA+AGG | 0.552730 | 7.1:+4002516 | None:intergenic |
| CGTTGGTGACGGTCCTCTTG+TGG | 0.553165 | 7.1:-4009768 | MS.gene050817:CDS |
| GGAGACATTTCAGCCTGTGG+GGG | 0.556776 | 7.1:-4004577 | MS.gene050817:CDS |
| AAGTGCCAGGCTTCTCGCAT+GGG | 0.557808 | 7.1:-4006814 | MS.gene050817:CDS |
| GTCAGAAACAGGAAGACCCC+AGG | 0.560823 | 7.1:-4007617 | MS.gene050817:CDS |
| TACCCTCAGTTTCTTATTAG+GGG | 0.561419 | 7.1:+4008217 | None:intergenic |
| TACCATCGTGCCCAATATCC+CGG | 0.561764 | 7.1:+4001048 | None:intergenic |
| GCTAGGAATGGGCTATGCTA+CGG | 0.562069 | 7.1:-4001271 | MS.gene050817:CDS |
| AAGAGCGTGTGGAGGAATAA+CGG | 0.562110 | 7.1:+4008241 | None:intergenic |
| ATGGAGCAGAAACGTCCGGT+TGG | 0.563286 | 7.1:-4002372 | MS.gene050817:CDS |
| AATGCTCTCTACTATCTGAT+GGG | 0.564934 | 7.1:+4007731 | None:intergenic |
| CAAATCATGGAGAGTTGACT+CGG | 0.565410 | 7.1:-4000773 | MS.gene050817:CDS |
| TAACCTCTTCAGAGCTTCAC+GGG | 0.567211 | 7.1:+4000863 | None:intergenic |
| GTTGGGCCTCTTGTTGTGGT+CGG | 0.567755 | 7.1:-4002354 | MS.gene050817:CDS |
| ACAAGTGAAATAGCGGTTGG+TGG | 0.570809 | 7.1:-4002429 | MS.gene050817:CDS |
| TCTAATGGAGAAAGCATGGC+AGG | 0.571254 | 7.1:-3999056 | MS.gene050817:CDS |
| TTCCTTTATAGATCTGGCGT+TGG | 0.572120 | 7.1:-4009785 | MS.gene050817:CDS |
| TGGTGGAGGAGGCGTGTCTG+TGG | 0.573140 | 7.1:-4002412 | MS.gene050817:CDS |
| AATCACGCTTGGCTTGGGAC+GGG | 0.574767 | 7.1:-3999116 | MS.gene050817:CDS |
| TACGTGAGAATCTTTGACAC+AGG | 0.575126 | 7.1:+4008438 | None:intergenic |
| GATTCTCCTAGATGTTCGAT+AGG | 0.575353 | 7.1:+4005890 | None:intergenic |
| CGCCCACAATATAGATACCT+GGG | 0.576267 | 7.1:-4004462 | MS.gene050817:CDS |
| AAATAGATCTCCAGCTGAGG+CGG | 0.578862 | 7.1:-4005760 | MS.gene050817:CDS |
| CAGCTTGCTAGAAGGTACAC+TGG | 0.579852 | 7.1:-4009626 | MS.gene050817:CDS |
| AATATCCCGGCTATTACTCA+TGG | 0.580262 | 7.1:+4001061 | None:intergenic |
| TTTGGTAATGATAGGAAAGG+TGG | 0.581242 | 7.1:+4002507 | None:intergenic |
| TTTACAAGGTCATGAATTGA+GGG | 0.581412 | 7.1:-4000814 | MS.gene050817:CDS |
| GTGTCAAAGATTCTCACGTA+TGG | 0.581676 | 7.1:-4008435 | MS.gene050817:intron |
| CTAGTGCTGTTTGGCACCGG+AGG | 0.583399 | 7.1:-4004416 | MS.gene050817:CDS |
| GTTGTGGTCGGTGTTAAGGA+TGG | 0.585013 | 7.1:-4002342 | MS.gene050817:CDS |
| TTATTAGGGGCAAGAGCGTG+TGG | 0.585452 | 7.1:+4008230 | None:intergenic |
| ACCGGGATGACTCAAAGATA+AGG | 0.586920 | 7.1:+4001480 | None:intergenic |
| ATATCAAGGTTCGGAGCTCG+AGG | 0.588597 | 7.1:+4008466 | None:intergenic |
| GTGTTGCCTATCGAACATCT+AGG | 0.592674 | 7.1:-4005896 | MS.gene050817:CDS |
| TCAACTCTCCATGATTTGCA+AGG | 0.594298 | 7.1:+4000778 | None:intergenic |
| GATTGGTCGATTGTTGACTC+TGG | 0.594520 | 7.1:-4006837 | MS.gene050817:CDS |
| ATGCTCTAATGGAGAAAGCA+TGG | 0.596377 | 7.1:-3999060 | MS.gene050817:CDS |
| GGATACTGGAATGATGGCAG+AGG | 0.598475 | 7.1:-3999035 | MS.gene050817:CDS |
| TCTCTACTATCTGATGGGGT+AGG | 0.600544 | 7.1:+4007736 | None:intergenic |
| TTAACACCGACCACAACAAG+AGG | 0.603163 | 7.1:+4002348 | None:intergenic |
| TGCATCTAGGCACATGACGG+CGG | 0.607347 | 7.1:-4008747 | MS.gene050817:intron |
| AACTCTGTAAATCCATCACT+CGG | 0.608617 | 7.1:-4007655 | MS.gene050817:CDS |
| TTCAAATAGATCTCCAGCTG+AGG | 0.612307 | 7.1:-4005763 | MS.gene050817:CDS |
| TTGCCCGTGAAGCTCTGAAG+AGG | 0.612343 | 7.1:-4000866 | MS.gene050817:CDS |
| TGCCCCTAATAAGAAACTGA+GGG | 0.612486 | 7.1:-4008219 | MS.gene050817:intron |
| GAACCATTACCTGTCAAGCA+GGG | 0.614271 | 7.1:-4007583 | MS.gene050817:CDS |
| AAGACAAGTGAAATAGCGGT+TGG | 0.620679 | 7.1:-4002432 | MS.gene050817:CDS |
| ACAAGAGCAATATCAGAGCA+TGG | 0.626182 | 7.1:-4003343 | MS.gene050817:CDS |
| CTCATGGACAAAAGAAGCAG+AGG | 0.627228 | 7.1:-4002460 | MS.gene050817:CDS |
| ACCTTGTAGACAGAAAAGTA+AGG | 0.629590 | 7.1:+4006864 | None:intergenic |
| GATGCACCAAAAGCCACAAG+AGG | 0.631832 | 7.1:+4009755 | None:intergenic |
| TTGCCCCTAATAAGAAACTG+AGG | 0.636362 | 7.1:-4008220 | MS.gene050817:CDS |
| ATTTGCCTGGAATATCAAAG+AGG | 0.636615 | 7.1:-4001239 | MS.gene050817:intron |
| AGCCGGGATATTGGGCACGA+TGG | 0.637666 | 7.1:-4001050 | MS.gene050817:CDS |
| ATGGAATTGAAACATCTCCC+AGG | 0.638441 | 7.1:+4004445 | None:intergenic |
| AATATGCTAATGAGGTCTGT+TGG | 0.639966 | 7.1:-4006606 | MS.gene050817:CDS |
| GCGCCAATTGTAATTAGCTG+AGG | 0.640157 | 7.1:+4008684 | None:intergenic |
| ATGCTCTCTACTATCTGATG+GGG | 0.640747 | 7.1:+4007732 | None:intergenic |
| GAGAAAGACAAGTGAAATAG+CGG | 0.642053 | 7.1:-4002436 | MS.gene050817:CDS |
| CAAGGTTCGGAGCTCGAGGG+TGG | 0.647667 | 7.1:+4008470 | None:intergenic |
| CGAATTCCTATAATTCCCAA+GGG | 0.648181 | 7.1:-4006744 | MS.gene050817:CDS |
| AGAACTGAGTATGAATCATG+AGG | 0.648295 | 7.1:+4007535 | None:intergenic |
| GTTCCAATAGCAACAAGATG+TGG | 0.650417 | 7.1:+4007820 | None:intergenic |
| CTTCATGGCAGCTTCAGGCG+AGG | 0.650772 | 7.1:-4009570 | MS.gene050817:intron |
| GCTGCAGATGCTACAGCACA+GGG | 0.652461 | 7.1:-4000894 | MS.gene050817:CDS |
| CATCTAGGCACATGACGGCG+GGG | 0.653225 | 7.1:-4008745 | MS.gene050817:intron |
| TTACAAGGTCATGAATTGAG+GGG | 0.654271 | 7.1:-4000813 | MS.gene050817:CDS |
| TATCAAGGTTCGGAGCTCGA+GGG | 0.657549 | 7.1:+4008467 | None:intergenic |
| TCAGAAACAGGAAGACCCCA+GGG | 0.660386 | 7.1:-4007616 | MS.gene050817:CDS |
| TGCAAAAGCACAATACTCGA+CGG | 0.660840 | 7.1:+4004515 | None:intergenic |
| GACATTAGCTATATGGGACA+CGG | 0.665115 | 7.1:-4008655 | MS.gene050817:CDS |
| TTATCAGGTTATGGAAGCAG+CGG | 0.668159 | 7.1:-4005822 | MS.gene050817:CDS |
| TGATGCATCTAGGCACATGA+CGG | 0.671546 | 7.1:-4008750 | MS.gene050817:intron |
| AAAATTGGCCTGCCACAGTG+TGG | 0.682317 | 7.1:-4008503 | MS.gene050817:CDS |
| GAGCTTTCTAGAGTGATGGG+AGG | 0.688391 | 7.1:-4008711 | MS.gene050817:CDS |
| ACGGTAGTCAATTCACACAA+TGG | 0.696769 | 7.1:+4008260 | None:intergenic |
| TTAGGGGCAAGAGCGTGTGG+AGG | 0.698797 | 7.1:+4008233 | None:intergenic |
| TAAATTGTGCTAAATCATCG+TGG | 0.722125 | 7.1:+4001295 | None:intergenic |
| CTTGCTAGAAGGTACACTGG+AGG | 0.722740 | 7.1:-4009623 | MS.gene050817:CDS |
| GGCACCAAGAAGCCACACTG+TGG | 0.725339 | 7.1:+4008491 | None:intergenic |
| GGTTCAAAAGCATCTCCCTG+GGG | 0.735509 | 7.1:+4007601 | None:intergenic |
| CTAGTGAGAGCAGAATATGT+GGG | 0.736342 | 7.1:+4008284 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.1 | gene | 3999018 | 4009814 | 3999018 | ID=MS.gene050817 |
| chr7.1 | mRNA | 3999018 | 4009814 | 3999018 | ID=MS.gene050817.t1;Parent=MS.gene050817 |
| chr7.1 | exon | 4009715 | 4009814 | 4009715 | ID=MS.gene050817.t1.exon1;Parent=MS.gene050817.t1 |
| chr7.1 | CDS | 4009715 | 4009814 | 4009715 | ID=cds.MS.gene050817.t1;Parent=MS.gene050817.t1 |
| chr7.1 | exon | 4009571 | 4009645 | 4009571 | ID=MS.gene050817.t1.exon2;Parent=MS.gene050817.t1 |
| chr7.1 | CDS | 4009571 | 4009645 | 4009571 | ID=cds.MS.gene050817.t1;Parent=MS.gene050817.t1 |
| chr7.1 | exon | 4009071 | 4009169 | 4009071 | ID=MS.gene050817.t1.exon3;Parent=MS.gene050817.t1 |
| chr7.1 | CDS | 4009071 | 4009169 | 4009071 | ID=cds.MS.gene050817.t1;Parent=MS.gene050817.t1 |
| chr7.1 | exon | 4008644 | 4008760 | 4008644 | ID=MS.gene050817.t1.exon4;Parent=MS.gene050817.t1 |
| chr7.1 | CDS | 4008644 | 4008760 | 4008644 | ID=cds.MS.gene050817.t1;Parent=MS.gene050817.t1 |
| chr7.1 | exon | 4008436 | 4008551 | 4008436 | ID=MS.gene050817.t1.exon5;Parent=MS.gene050817.t1 |
| chr7.1 | CDS | 4008436 | 4008551 | 4008436 | ID=cds.MS.gene050817.t1;Parent=MS.gene050817.t1 |
| chr7.1 | exon | 4008220 | 4008319 | 4008220 | ID=MS.gene050817.t1.exon6;Parent=MS.gene050817.t1 |
| chr7.1 | CDS | 4008220 | 4008319 | 4008220 | ID=cds.MS.gene050817.t1;Parent=MS.gene050817.t1 |
| chr7.1 | exon | 4007514 | 4007872 | 4007514 | ID=MS.gene050817.t1.exon7;Parent=MS.gene050817.t1 |
| chr7.1 | CDS | 4007514 | 4007872 | 4007514 | ID=cds.MS.gene050817.t1;Parent=MS.gene050817.t1 |
| chr7.1 | exon | 4006590 | 4006914 | 4006590 | ID=MS.gene050817.t1.exon8;Parent=MS.gene050817.t1 |
| chr7.1 | CDS | 4006590 | 4006914 | 4006590 | ID=cds.MS.gene050817.t1;Parent=MS.gene050817.t1 |
| chr7.1 | exon | 4005735 | 4005949 | 4005735 | ID=MS.gene050817.t1.exon9;Parent=MS.gene050817.t1 |
| chr7.1 | CDS | 4005735 | 4005949 | 4005735 | ID=cds.MS.gene050817.t1;Parent=MS.gene050817.t1 |
| chr7.1 | exon | 4004384 | 4004602 | 4004384 | ID=MS.gene050817.t1.exon10;Parent=MS.gene050817.t1 |
| chr7.1 | CDS | 4004384 | 4004602 | 4004384 | ID=cds.MS.gene050817.t1;Parent=MS.gene050817.t1 |
| chr7.1 | exon | 4003264 | 4003450 | 4003264 | ID=MS.gene050817.t1.exon11;Parent=MS.gene050817.t1 |
| chr7.1 | CDS | 4003264 | 4003450 | 4003264 | ID=cds.MS.gene050817.t1;Parent=MS.gene050817.t1 |
| chr7.1 | exon | 4002321 | 4002568 | 4002321 | ID=MS.gene050817.t1.exon12;Parent=MS.gene050817.t1 |
| chr7.1 | CDS | 4002321 | 4002568 | 4002321 | ID=cds.MS.gene050817.t1;Parent=MS.gene050817.t1 |
| chr7.1 | exon | 4001427 | 4001519 | 4001427 | ID=MS.gene050817.t1.exon13;Parent=MS.gene050817.t1 |
| chr7.1 | CDS | 4001427 | 4001519 | 4001427 | ID=cds.MS.gene050817.t1;Parent=MS.gene050817.t1 |
| chr7.1 | exon | 4001240 | 4001341 | 4001240 | ID=MS.gene050817.t1.exon14;Parent=MS.gene050817.t1 |
| chr7.1 | CDS | 4001240 | 4001341 | 4001240 | ID=cds.MS.gene050817.t1;Parent=MS.gene050817.t1 |
| chr7.1 | exon | 4000767 | 4001145 | 4000767 | ID=MS.gene050817.t1.exon15;Parent=MS.gene050817.t1 |
| chr7.1 | CDS | 4000767 | 4001145 | 4000767 | ID=cds.MS.gene050817.t1;Parent=MS.gene050817.t1 |
| chr7.1 | exon | 3999018 | 3999155 | 3999018 | ID=MS.gene050817.t1.exon16;Parent=MS.gene050817.t1 |
| chr7.1 | CDS | 3999018 | 3999155 | 3999018 | ID=cds.MS.gene050817.t1;Parent=MS.gene050817.t1 |
| Gene Sequence |
| Protein sequence |
