Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072202.t1 | XP_024627627.1 | 95.1 | 367 | 18 | 0 | 3 | 369 | 7 | 373 | 2.00E-199 | 704.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072202.t1 | Q9C8I6 | 43.5 | 363 | 198 | 4 | 10 | 369 | 7 | 365 | 2.7e-80 | 300.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072202.t1 | A0A072TMZ0 | 95.1 | 367 | 18 | 0 | 3 | 369 | 7 | 373 | 1.4e-199 | 704.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene060087 | MS.gene072202 | 0.804733 | 1.87E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072202.t1 | MTR_8g014690 | 95.095 | 367 | 18 | 0 | 3 | 369 | 7 | 373 | 0.0 | 721 |
| MS.gene072202.t1 | MTR_8g014690 | 95.082 | 366 | 18 | 0 | 4 | 369 | 1 | 366 | 0.0 | 720 |
| MS.gene072202.t1 | MTR_8g014790 | 76.486 | 370 | 84 | 2 | 1 | 369 | 1 | 368 | 0.0 | 578 |
| MS.gene072202.t1 | MTR_8g014700 | 71.703 | 364 | 99 | 3 | 8 | 369 | 10 | 371 | 0.0 | 533 |
| MS.gene072202.t1 | MTR_8g014700 | 71.703 | 364 | 99 | 3 | 8 | 369 | 10 | 371 | 0.0 | 533 |
| MS.gene072202.t1 | MTR_8g014700 | 71.703 | 364 | 99 | 3 | 8 | 369 | 10 | 371 | 0.0 | 530 |
| MS.gene072202.t1 | MTR_8g014930 | 70.571 | 350 | 96 | 3 | 22 | 369 | 24 | 368 | 6.65e-176 | 504 |
| MS.gene072202.t1 | MTR_8g014930 | 70.571 | 350 | 96 | 3 | 22 | 369 | 24 | 368 | 1.36e-175 | 504 |
| MS.gene072202.t1 | MTR_8g015150 | 70.170 | 352 | 101 | 3 | 21 | 369 | 13 | 363 | 3.39e-175 | 503 |
| MS.gene072202.t1 | MTR_8g015150 | 70.170 | 352 | 101 | 3 | 21 | 369 | 13 | 363 | 6.20e-175 | 503 |
| MS.gene072202.t1 | MTR_8g014930 | 70.571 | 350 | 96 | 3 | 22 | 369 | 24 | 368 | 8.89e-174 | 505 |
| MS.gene072202.t1 | MTR_8g014930 | 70.571 | 350 | 96 | 3 | 22 | 369 | 19 | 363 | 2.28e-173 | 505 |
| MS.gene072202.t1 | MTR_8g015150 | 70.170 | 352 | 101 | 3 | 21 | 369 | 13 | 363 | 8.33e-173 | 504 |
| MS.gene072202.t1 | MTR_8g014730 | 68.785 | 362 | 109 | 1 | 8 | 369 | 10 | 367 | 1.50e-172 | 496 |
| MS.gene072202.t1 | MTR_8g014760 | 67.302 | 367 | 107 | 7 | 8 | 369 | 10 | 368 | 3.94e-166 | 476 |
| MS.gene072202.t1 | MTR_8g014760 | 67.302 | 367 | 107 | 7 | 8 | 369 | 10 | 368 | 4.03e-165 | 476 |
| MS.gene072202.t1 | MTR_8g014760 | 67.302 | 367 | 107 | 7 | 8 | 369 | 10 | 368 | 2.66e-164 | 476 |
| MS.gene072202.t1 | MTR_8g014760 | 67.302 | 367 | 107 | 7 | 8 | 369 | 6 | 364 | 3.36e-162 | 476 |
| MS.gene072202.t1 | MTR_8g015340 | 68.571 | 350 | 102 | 5 | 25 | 369 | 36 | 382 | 4.44e-162 | 477 |
| MS.gene072202.t1 | MTR_8g028110 | 64.402 | 368 | 123 | 6 | 8 | 369 | 10 | 375 | 1.09e-158 | 468 |
| MS.gene072202.t1 | MTR_8g014840 | 65.043 | 349 | 102 | 3 | 8 | 355 | 5 | 334 | 2.00e-156 | 443 |
| MS.gene072202.t1 | MTR_8g015190 | 62.005 | 379 | 124 | 6 | 9 | 369 | 17 | 393 | 2.51e-154 | 457 |
| MS.gene072202.t1 | MTR_8g461120 | 63.957 | 369 | 123 | 7 | 9 | 369 | 19 | 385 | 2.82e-153 | 448 |
| MS.gene072202.t1 | MTR_8g461120 | 63.957 | 369 | 123 | 7 | 9 | 369 | 19 | 385 | 7.14e-152 | 449 |
| MS.gene072202.t1 | MTR_8g461120 | 63.957 | 369 | 123 | 7 | 9 | 369 | 19 | 385 | 1.44e-151 | 449 |
| MS.gene072202.t1 | MTR_8g015200 | 64.516 | 341 | 113 | 3 | 32 | 369 | 10 | 345 | 3.10e-151 | 447 |
| MS.gene072202.t1 | MTR_8g015190 | 62.005 | 379 | 124 | 6 | 9 | 369 | 7 | 383 | 5.46e-151 | 457 |
| MS.gene072202.t1 | MTR_8g015190 | 58.298 | 235 | 61 | 3 | 8 | 212 | 984 | 1211 | 3.67e-73 | 247 |
| MS.gene072202.t1 | MTR_6g090605 | 42.120 | 368 | 204 | 5 | 10 | 370 | 16 | 381 | 1.26e-85 | 265 |
| MS.gene072202.t1 | MTR_6g090615 | 42.005 | 369 | 202 | 6 | 10 | 371 | 10 | 373 | 1.46e-82 | 270 |
| MS.gene072202.t1 | MTR_2g100450 | 43.386 | 378 | 193 | 9 | 1 | 369 | 1 | 366 | 1.26e-81 | 264 |
| MS.gene072202.t1 | MTR_2g100450 | 43.396 | 371 | 192 | 9 | 9 | 369 | 4 | 366 | 1.54e-80 | 264 |
| MS.gene072202.t1 | MTR_2g100470 | 42.120 | 349 | 185 | 7 | 30 | 369 | 13 | 353 | 4.81e-78 | 255 |
| MS.gene072202.t1 | MTR_8g015040 | 35.326 | 368 | 196 | 11 | 24 | 357 | 51 | 410 | 1.50e-53 | 190 |
| MS.gene072202.t1 | MTR_8g015010 | 35.326 | 368 | 193 | 12 | 24 | 357 | 43 | 399 | 4.82e-50 | 180 |
| MS.gene072202.t1 | MTR_5g058090 | 33.803 | 355 | 213 | 11 | 30 | 369 | 37 | 384 | 3.14e-45 | 166 |
| MS.gene072202.t1 | MTR_8g015150 | 66.102 | 118 | 40 | 0 | 252 | 369 | 1 | 118 | 2.32e-44 | 162 |
| MS.gene072202.t1 | MTR_3g086120 | 30.986 | 355 | 222 | 9 | 32 | 368 | 25 | 374 | 2.09e-43 | 161 |
| MS.gene072202.t1 | MTR_3g086120 | 30.986 | 355 | 222 | 9 | 32 | 368 | 25 | 374 | 3.01e-43 | 160 |
| MS.gene072202.t1 | MTR_7g100630 | 30.352 | 369 | 214 | 10 | 27 | 372 | 28 | 376 | 4.53e-41 | 154 |
| MS.gene072202.t1 | MTR_6g071455 | 32.184 | 348 | 207 | 12 | 32 | 369 | 26 | 354 | 5.25e-41 | 151 |
| MS.gene072202.t1 | MTR_1g066950 | 30.028 | 363 | 217 | 9 | 31 | 372 | 26 | 372 | 1.37e-40 | 153 |
| MS.gene072202.t1 | MTR_6g071455 | 32.184 | 348 | 207 | 12 | 32 | 369 | 26 | 354 | 1.71e-40 | 151 |
| MS.gene072202.t1 | MTR_8g015100 | 38.318 | 214 | 119 | 5 | 24 | 226 | 48 | 259 | 5.81e-32 | 127 |
| MS.gene072202.t1 | MTR_8g014980 | 39.459 | 185 | 99 | 4 | 31 | 204 | 14 | 196 | 2.32e-31 | 118 |
| MS.gene072202.t1 | MTR_1g104850 | 28.329 | 353 | 217 | 19 | 31 | 368 | 25 | 356 | 5.87e-25 | 106 |
| MS.gene072202.t1 | MTR_4g086250 | 25.549 | 364 | 247 | 13 | 4 | 357 | 11 | 360 | 6.97e-23 | 100 |
| MS.gene072202.t1 | MTR_2g100450 | 38.889 | 162 | 92 | 3 | 212 | 369 | 3 | 161 | 1.98e-22 | 99.4 |
| MS.gene072202.t1 | MTR_7g057170 | 31.325 | 249 | 149 | 13 | 20 | 255 | 15 | 254 | 2.53e-20 | 93.2 |
| MS.gene072202.t1 | MTR_7g057170 | 31.325 | 249 | 149 | 13 | 20 | 255 | 15 | 254 | 2.65e-20 | 93.2 |
| MS.gene072202.t1 | MTR_5g053610 | 25.839 | 298 | 187 | 13 | 35 | 304 | 27 | 318 | 6.74e-11 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072202.t1 | AT1G51800 | 43.526 | 363 | 198 | 4 | 10 | 369 | 7 | 365 | 1.94e-96 | 306 |
| MS.gene072202.t1 | AT1G05700 | 44.385 | 374 | 194 | 7 | 5 | 370 | 1 | 368 | 1.27e-93 | 298 |
| MS.gene072202.t1 | AT1G05700 | 44.385 | 374 | 194 | 7 | 5 | 370 | 1 | 368 | 2.47e-93 | 298 |
| MS.gene072202.t1 | AT4G29990 | 43.089 | 369 | 197 | 7 | 8 | 369 | 4 | 366 | 1.32e-89 | 285 |
| MS.gene072202.t1 | AT4G29990 | 43.089 | 369 | 197 | 7 | 8 | 369 | 4 | 366 | 9.78e-89 | 286 |
| MS.gene072202.t1 | AT1G51890 | 42.818 | 369 | 197 | 7 | 8 | 369 | 1 | 362 | 3.12e-86 | 276 |
| MS.gene072202.t1 | AT1G51790 | 45.506 | 356 | 183 | 6 | 21 | 369 | 18 | 369 | 3.29e-86 | 279 |
| MS.gene072202.t1 | AT1G51790 | 45.506 | 356 | 183 | 6 | 21 | 369 | 18 | 369 | 3.29e-86 | 279 |
| MS.gene072202.t1 | AT1G51790 | 45.506 | 356 | 183 | 6 | 21 | 369 | 18 | 369 | 6.81e-86 | 279 |
| MS.gene072202.t1 | AT5G59680 | 43.266 | 349 | 190 | 5 | 25 | 369 | 22 | 366 | 9.57e-86 | 278 |
| MS.gene072202.t1 | AT1G51860 | 43.407 | 364 | 199 | 5 | 10 | 369 | 7 | 367 | 1.93e-85 | 277 |
| MS.gene072202.t1 | AT1G51890 | 42.818 | 369 | 197 | 7 | 8 | 369 | 1 | 362 | 3.24e-85 | 276 |
| MS.gene072202.t1 | AT1G51890 | 42.818 | 369 | 197 | 7 | 8 | 369 | 1 | 362 | 4.65e-85 | 276 |
| MS.gene072202.t1 | AT3G21340 | 41.823 | 373 | 200 | 9 | 6 | 369 | 6 | 370 | 1.43e-84 | 271 |
| MS.gene072202.t1 | AT2G19210 | 42.416 | 356 | 194 | 6 | 21 | 369 | 20 | 371 | 1.14e-83 | 272 |
| MS.gene072202.t1 | AT1G51880 | 42.308 | 364 | 202 | 6 | 10 | 369 | 7 | 366 | 1.88e-83 | 271 |
| MS.gene072202.t1 | AT1G51880 | 42.308 | 364 | 202 | 6 | 10 | 369 | 25 | 384 | 2.01e-83 | 272 |
| MS.gene072202.t1 | AT1G51880 | 42.308 | 364 | 202 | 6 | 10 | 369 | 25 | 384 | 2.46e-83 | 272 |
| MS.gene072202.t1 | AT3G21340 | 41.823 | 373 | 200 | 9 | 6 | 369 | 6 | 370 | 4.37e-83 | 271 |
| MS.gene072202.t1 | AT3G46330 | 42.391 | 368 | 193 | 10 | 10 | 367 | 8 | 366 | 1.10e-81 | 266 |
| MS.gene072202.t1 | AT3G46330 | 42.391 | 368 | 193 | 10 | 10 | 367 | 8 | 366 | 1.33e-81 | 267 |
| MS.gene072202.t1 | AT2G19230 | 42.737 | 358 | 192 | 7 | 21 | 369 | 19 | 372 | 1.91e-81 | 266 |
| MS.gene072202.t1 | AT5G59670 | 41.643 | 353 | 195 | 6 | 23 | 369 | 19 | 366 | 6.15e-81 | 265 |
| MS.gene072202.t1 | AT5G59670 | 41.643 | 353 | 195 | 6 | 23 | 369 | 19 | 366 | 6.15e-81 | 265 |
| MS.gene072202.t1 | AT2G19230 | 42.737 | 358 | 192 | 7 | 21 | 369 | 19 | 372 | 8.82e-81 | 266 |
| MS.gene072202.t1 | AT1G51850 | 41.408 | 355 | 191 | 7 | 21 | 369 | 15 | 358 | 9.04e-80 | 262 |
| MS.gene072202.t1 | AT2G19190 | 41.935 | 372 | 202 | 6 | 8 | 369 | 4 | 371 | 3.59e-79 | 260 |
| MS.gene072202.t1 | AT1G51870 | 42.045 | 352 | 193 | 7 | 24 | 369 | 21 | 367 | 3.83e-78 | 257 |
| MS.gene072202.t1 | AT1G51870 | 42.045 | 352 | 193 | 7 | 24 | 369 | 21 | 367 | 4.47e-78 | 257 |
| MS.gene072202.t1 | AT1G51910 | 44.034 | 352 | 188 | 7 | 23 | 369 | 20 | 367 | 1.81e-77 | 256 |
| MS.gene072202.t1 | AT5G59650 | 41.226 | 359 | 201 | 6 | 16 | 369 | 13 | 366 | 2.28e-77 | 255 |
| MS.gene072202.t1 | AT2G28990 | 40.278 | 360 | 208 | 5 | 13 | 369 | 6 | 361 | 7.38e-77 | 254 |
| MS.gene072202.t1 | AT2G28990 | 40.278 | 360 | 208 | 5 | 13 | 369 | 6 | 361 | 7.38e-77 | 254 |
| MS.gene072202.t1 | AT1G49100 | 41.408 | 355 | 194 | 7 | 23 | 369 | 21 | 369 | 2.73e-76 | 253 |
| MS.gene072202.t1 | AT2G14510 | 38.692 | 367 | 214 | 7 | 9 | 369 | 14 | 375 | 1.48e-75 | 250 |
| MS.gene072202.t1 | AT1G07560 | 42.577 | 357 | 184 | 10 | 24 | 369 | 22 | 368 | 1.54e-75 | 250 |
| MS.gene072202.t1 | AT2G14510 | 38.692 | 367 | 214 | 7 | 9 | 369 | 6 | 367 | 2.03e-75 | 250 |
| MS.gene072202.t1 | AT3G46400 | 40.584 | 377 | 193 | 11 | 9 | 369 | 6 | 367 | 2.63e-75 | 250 |
| MS.gene072202.t1 | AT5G59650 | 40.678 | 354 | 200 | 6 | 16 | 364 | 13 | 361 | 1.58e-74 | 248 |
| MS.gene072202.t1 | AT1G07550 | 39.084 | 371 | 206 | 8 | 9 | 369 | 6 | 366 | 5.44e-74 | 246 |
| MS.gene072202.t1 | AT2G29000 | 40.274 | 365 | 203 | 10 | 10 | 369 | 8 | 362 | 6.28e-74 | 246 |
| MS.gene072202.t1 | AT4G29450 | 39.946 | 373 | 205 | 8 | 12 | 369 | 4 | 372 | 1.07e-73 | 245 |
| MS.gene072202.t1 | AT1G51820 | 40.341 | 352 | 195 | 7 | 23 | 369 | 17 | 358 | 2.06e-73 | 245 |
| MS.gene072202.t1 | AT4G29180 | 38.965 | 367 | 210 | 6 | 13 | 369 | 9 | 371 | 5.22e-73 | 244 |
| MS.gene072202.t1 | AT4G29180 | 38.965 | 367 | 210 | 6 | 13 | 369 | 9 | 371 | 5.27e-73 | 244 |
| MS.gene072202.t1 | AT4G29180 | 38.965 | 367 | 210 | 6 | 13 | 369 | 9 | 371 | 5.40e-73 | 244 |
| MS.gene072202.t1 | AT1G51850 | 39.155 | 355 | 179 | 7 | 21 | 369 | 15 | 338 | 8.61e-73 | 243 |
| MS.gene072202.t1 | AT1G51805 | 39.776 | 357 | 197 | 8 | 21 | 370 | 15 | 360 | 2.10e-72 | 242 |
| MS.gene072202.t1 | AT2G14440 | 40.678 | 354 | 198 | 8 | 23 | 369 | 20 | 368 | 5.11e-72 | 241 |
| MS.gene072202.t1 | AT2G04300 | 39.335 | 361 | 197 | 9 | 21 | 369 | 21 | 371 | 1.65e-71 | 239 |
| MS.gene072202.t1 | AT3G46340 | 40.270 | 370 | 210 | 7 | 7 | 369 | 4 | 369 | 7.27e-70 | 235 |
| MS.gene072202.t1 | AT3G46420 | 41.918 | 365 | 204 | 6 | 9 | 369 | 6 | 366 | 9.30e-70 | 234 |
| MS.gene072202.t1 | AT1G51805 | 37.815 | 357 | 180 | 8 | 21 | 370 | 15 | 336 | 2.07e-66 | 225 |
| MS.gene072202.t1 | AT2G28960 | 36.631 | 374 | 222 | 8 | 1 | 369 | 1 | 364 | 1.30e-65 | 223 |
| MS.gene072202.t1 | AT5G16900 | 36.415 | 357 | 210 | 7 | 26 | 369 | 18 | 370 | 3.05e-63 | 213 |
| MS.gene072202.t1 | AT3G46350 | 38.329 | 347 | 196 | 9 | 10 | 343 | 8 | 349 | 5.47e-63 | 208 |
| MS.gene072202.t1 | AT5G16900 | 36.517 | 356 | 209 | 7 | 27 | 369 | 19 | 370 | 3.39e-62 | 214 |
| MS.gene072202.t1 | AT5G16900 | 36.517 | 356 | 209 | 7 | 27 | 369 | 19 | 370 | 3.39e-62 | 214 |
| MS.gene072202.t1 | AT4G20450 | 36.480 | 392 | 220 | 14 | 1 | 369 | 1 | 386 | 7.93e-62 | 213 |
| MS.gene072202.t1 | AT4G20450 | 36.480 | 392 | 220 | 14 | 1 | 369 | 1 | 386 | 8.79e-62 | 213 |
| MS.gene072202.t1 | AT2G04300 | 39.032 | 310 | 168 | 8 | 21 | 319 | 21 | 320 | 8.59e-61 | 210 |
| MS.gene072202.t1 | AT3G46370 | 41.489 | 282 | 159 | 4 | 90 | 369 | 1 | 278 | 3.71e-59 | 205 |
| MS.gene072202.t1 | AT3G46370 | 41.489 | 282 | 159 | 4 | 90 | 369 | 1 | 278 | 3.71e-59 | 205 |
| MS.gene072202.t1 | AT1G51840 | 45.355 | 183 | 91 | 4 | 21 | 201 | 22 | 197 | 5.62e-44 | 151 |
| MS.gene072202.t1 | AT1G51840 | 45.355 | 183 | 91 | 4 | 21 | 201 | 22 | 197 | 5.62e-44 | 151 |
| MS.gene072202.t1 | AT1G51840 | 45.355 | 183 | 91 | 4 | 21 | 201 | 22 | 197 | 5.62e-44 | 151 |
| MS.gene072202.t1 | AT1G51840 | 45.355 | 183 | 91 | 4 | 21 | 201 | 22 | 197 | 5.62e-44 | 151 |
| MS.gene072202.t1 | AT1G51840 | 45.355 | 183 | 91 | 4 | 21 | 201 | 22 | 197 | 5.62e-44 | 151 |
| MS.gene072202.t1 | AT1G51860 | 40.265 | 226 | 130 | 3 | 146 | 369 | 1 | 223 | 2.34e-39 | 149 |
| MS.gene072202.t1 | AT1G51810 | 36.515 | 241 | 142 | 6 | 132 | 369 | 1 | 233 | 1.16e-37 | 144 |
| MS.gene072202.t1 | AT2G28970 | 37.168 | 226 | 137 | 3 | 145 | 369 | 8 | 229 | 1.31e-35 | 138 |
| MS.gene072202.t1 | AT1G67720 | 29.545 | 352 | 206 | 10 | 32 | 356 | 26 | 362 | 1.96e-35 | 138 |
| MS.gene072202.t1 | AT3G46270 | 30.000 | 370 | 218 | 18 | 8 | 359 | 10 | 356 | 6.05e-34 | 131 |
| MS.gene072202.t1 | AT3G46270 | 30.000 | 370 | 218 | 18 | 8 | 359 | 18 | 364 | 6.17e-34 | 131 |
| MS.gene072202.t1 | AT5G59660 | 29.891 | 368 | 168 | 11 | 11 | 369 | 20 | 306 | 8.62e-33 | 130 |
| MS.gene072202.t1 | AT5G59660 | 29.891 | 368 | 168 | 11 | 11 | 369 | 20 | 306 | 8.97e-33 | 130 |
| MS.gene072202.t1 | AT2G37050 | 29.494 | 356 | 203 | 11 | 31 | 356 | 27 | 364 | 1.70e-32 | 129 |
| MS.gene072202.t1 | AT2G37050 | 29.494 | 356 | 203 | 11 | 31 | 356 | 27 | 364 | 1.76e-32 | 129 |
| MS.gene072202.t1 | AT2G37050 | 29.494 | 356 | 203 | 11 | 31 | 356 | 27 | 364 | 2.21e-32 | 129 |
| MS.gene072202.t1 | AT2G37050 | 29.494 | 356 | 203 | 11 | 31 | 356 | 27 | 364 | 2.28e-32 | 129 |
| MS.gene072202.t1 | AT1G51890 | 37.864 | 206 | 116 | 5 | 169 | 369 | 100 | 298 | 8.78e-32 | 127 |
| MS.gene072202.t1 | AT1G51890 | 53.191 | 94 | 42 | 2 | 8 | 99 | 1 | 94 | 6.38e-20 | 92.0 |
| MS.gene072202.t1 | AT3G46280 | 30.836 | 347 | 203 | 15 | 33 | 361 | 25 | 352 | 4.27e-31 | 123 |
| MS.gene072202.t1 | AT5G59660 | 29.275 | 345 | 167 | 11 | 33 | 369 | 9 | 284 | 2.85e-30 | 122 |
| MS.gene072202.t1 | AT1G51830 | 36.464 | 181 | 107 | 2 | 190 | 369 | 3 | 176 | 5.08e-28 | 116 |
| MS.gene072202.t1 | AT1G51830 | 39.623 | 159 | 95 | 1 | 212 | 369 | 11 | 169 | 5.32e-28 | 115 |
| MS.gene072202.t1 | AT2G28960 | 31.556 | 225 | 147 | 4 | 147 | 369 | 13 | 232 | 8.76e-28 | 115 |
| MS.gene072202.t1 | AT3G46260 | 27.247 | 356 | 221 | 15 | 23 | 360 | 22 | 357 | 5.71e-27 | 111 |
| MS.gene072202.t1 | AT2G28970 | 34.500 | 200 | 124 | 3 | 176 | 369 | 66 | 264 | 7.32e-26 | 109 |
| MS.gene072202.t1 | AT2G28970 | 44.304 | 79 | 42 | 2 | 17 | 93 | 10 | 88 | 2.66e-11 | 65.5 |
| MS.gene072202.t1 | AT3G19230 | 27.811 | 338 | 221 | 13 | 31 | 357 | 22 | 347 | 7.57e-26 | 108 |
| MS.gene072202.t1 | AT3G05990 | 27.635 | 351 | 225 | 15 | 33 | 368 | 28 | 364 | 1.16e-24 | 105 |
| MS.gene072202.t1 | AT1G24485 | 28.045 | 353 | 231 | 10 | 11 | 357 | 11 | 346 | 4.88e-23 | 100 |
| MS.gene072202.t1 | AT1G24485 | 28.045 | 353 | 231 | 10 | 11 | 357 | 11 | 346 | 5.60e-23 | 100 |
| MS.gene072202.t1 | AT1G24485 | 28.045 | 353 | 231 | 10 | 11 | 357 | 11 | 346 | 6.70e-23 | 100 |
| MS.gene072202.t1 | AT1G24485 | 28.045 | 353 | 231 | 10 | 11 | 357 | 11 | 346 | 1.89e-22 | 99.4 |
| MS.gene072202.t1 | AT5G48740 | 27.907 | 344 | 206 | 19 | 31 | 357 | 20 | 338 | 9.81e-20 | 91.7 |
| MS.gene072202.t1 | AT5G59616 | 44.231 | 104 | 57 | 1 | 267 | 369 | 1 | 104 | 1.04e-18 | 82.8 |
| MS.gene072202.t1 | AT3G46240 | 27.139 | 339 | 203 | 10 | 33 | 365 | 6 | 306 | 2.22e-17 | 83.6 |
| MS.gene072202.t1 | AT5G16900 | 29.586 | 169 | 108 | 3 | 212 | 369 | 16 | 184 | 5.13e-16 | 80.1 |
| MS.gene072202.t1 | AT1G51820 | 40.698 | 86 | 50 | 1 | 285 | 369 | 11 | 96 | 1.73e-11 | 66.2 |
Find 68 sgRNAs with CRISPR-Local
Find 82 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCACAATTTGATCTTCATTT+TGG | 0.116421 | 8.1:-82680530 | MS.gene072202:CDS |
| TACACCACTGTCTATGAATT+TGG | 0.169825 | 8.1:+82680721 | None:intergenic |
| CTGAATTAATATATCATCTT+TGG | 0.228810 | 8.1:+82680092 | None:intergenic |
| CAAAGGTATTGTACTAAATA+TGG | 0.290461 | 8.1:+82679837 | None:intergenic |
| CATTACTGAATTTGAAAATC+TGG | 0.307356 | 8.1:-82679947 | MS.gene072202:CDS |
| ATAGGAGCACTGGTATTTAC+TGG | 0.338814 | 8.1:+82680024 | None:intergenic |
| TATAAACCTCAACGGCATTC+AGG | 0.351388 | 8.1:+82679752 | None:intergenic |
| TACTTCTTTCGATTTGATAT+AGG | 0.366048 | 8.1:-82680305 | MS.gene072202:CDS |
| CAAAGGGACTCCATTCATTT+CGG | 0.371369 | 8.1:-82680396 | MS.gene072202:CDS |
| CAATACTGTTCTACAACAAC+TGG | 0.377723 | 8.1:-82680675 | MS.gene072202:CDS |
| GTACTAAAACCAAAGTAGTA+TGG | 0.378327 | 8.1:+82680946 | None:intergenic |
| GGCTATTGAATTGAGGACTT+TGG | 0.381717 | 8.1:-82680375 | MS.gene072202:CDS |
| ATGATGTTTATGACCGCATC+TGG | 0.432420 | 8.1:-82680152 | MS.gene072202:CDS |
| GCTTGGTATCCATACTACTT+TGG | 0.435096 | 8.1:-82680955 | MS.gene072202:CDS |
| GTGAATGGAATCCTTATGTA+TGG | 0.446758 | 8.1:-82679892 | MS.gene072202:CDS |
| GTACAAGCTCAGGATCAATC+AGG | 0.453587 | 8.1:-82680927 | MS.gene072202:intron |
| GCATCGAAACTAAATTGTAT+AGG | 0.456223 | 8.1:+82680006 | None:intergenic |
| GTATCTGCTGACCGGTATAC+AGG | 0.458332 | 8.1:+82679859 | None:intergenic |
| TTTAGTACAATACCTTTGAC+TGG | 0.459776 | 8.1:-82679832 | MS.gene072202:CDS |
| CTCACAATCAGAAACTCAAC+AGG | 0.460312 | 8.1:-82679716 | MS.gene072202:CDS |
| CGGCATTCAGGATGGGTGGA+AGG | 0.468371 | 8.1:+82679764 | None:intergenic |
| GATTGTGATGCGTGATAGAT+TGG | 0.469871 | 8.1:+82680478 | None:intergenic |
| TCATTCAATATCACAGTGAA+TGG | 0.472383 | 8.1:-82679907 | MS.gene072202:CDS |
| TCATTTCGGCTATTGAATTG+AGG | 0.481392 | 8.1:-82680382 | MS.gene072202:CDS |
| TGAATTATCCGTCTTGGAAA+GGG | 0.483464 | 8.1:+82679789 | None:intergenic |
| TTGAATTATCCGTCTTGGAA+AGG | 0.490899 | 8.1:+82679788 | None:intergenic |
| CCTGTATTCTAAGTTTGTGA+TGG | 0.492833 | 8.1:+82680280 | None:intergenic |
| CAAAATGAAGATCAAATTGT+GGG | 0.499299 | 8.1:+82680531 | None:intergenic |
| GTATCTCAGGTCCATACATA+AGG | 0.501274 | 8.1:+82679881 | None:intergenic |
| TAGACAGTGGTGTAAGTAAG+AGG | 0.501755 | 8.1:-82680712 | MS.gene072202:CDS |
| TGTGCAAATATATGTAGTAT+TGG | 0.501912 | 8.1:+82679968 | None:intergenic |
| AAGGGTTGAATTATCCGTCT+TGG | 0.502389 | 8.1:+82679783 | None:intergenic |
| GACCGGTATACAGGTATCTC+AGG | 0.504896 | 8.1:+82679868 | None:intergenic |
| CCATCACAAACTTAGAATAC+AGG | 0.513044 | 8.1:-82680280 | MS.gene072202:intron |
| ACTAAATTGTATAGGAGCAC+TGG | 0.513177 | 8.1:+82680014 | None:intergenic |
| AATTCAATAGCCGAAATGAA+TGG | 0.519295 | 8.1:+82680386 | None:intergenic |
| TCTATCACGCATCACAATCA+AGG | 0.526110 | 8.1:-82680474 | MS.gene072202:CDS |
| ACCTCAACGGCATTCAGGAT+GGG | 0.527412 | 8.1:+82679757 | None:intergenic |
| GCAGTGCTCATCACAACTGC+TGG | 0.529377 | 8.1:+82680054 | None:intergenic |
| AACCTCAACGGCATTCAGGA+TGG | 0.532697 | 8.1:+82679756 | None:intergenic |
| GGCATTCAGGATGGGTGGAA+GGG | 0.533642 | 8.1:+82679765 | None:intergenic |
| ACCCATCCTGAATGCCGTTG+AGG | 0.551125 | 8.1:-82679758 | MS.gene072202:CDS |
| TGTCTTGTTAACACAGGCAA+AGG | 0.553002 | 8.1:-82680413 | MS.gene072202:CDS |
| TCAGAAACTCAACAGGATGA+TGG | 0.557417 | 8.1:-82679709 | MS.gene072202:CDS |
| CCAAAATGAAGATCAAATTG+TGG | 0.561655 | 8.1:+82680530 | None:intergenic |
| GTCTTGTTAACACAGGCAAA+GGG | 0.563362 | 8.1:-82680412 | MS.gene072202:CDS |
| TATATTTACCCTTTCCAAGA+CGG | 0.566216 | 8.1:-82679797 | MS.gene072202:CDS |
| TTTAAACTACACTAAAGGGC+TGG | 0.570410 | 8.1:+82679682 | None:intergenic |
| AGCTATTCTGAGACAAGCAC+AGG | 0.571148 | 8.1:-82680764 | MS.gene072202:CDS |
| GGTTGTATGTAATCTAATGA+TGG | 0.575348 | 8.1:+82680437 | None:intergenic |
| TAAATATGGTATCTGCTGAC+CGG | 0.579097 | 8.1:+82679851 | None:intergenic |
| GACCTGAGATACCTGTATAC+CGG | 0.584899 | 8.1:-82679870 | MS.gene072202:CDS |
| TTGCCTGTGTTAACAAGACA+TGG | 0.589284 | 8.1:+82680416 | None:intergenic |
| AGTAAGAGGATACTACCTAC+AGG | 0.602871 | 8.1:-82680698 | MS.gene072202:CDS |
| GGATTCATTAGCATAGATTG+TGG | 0.617648 | 8.1:-82680803 | MS.gene072202:CDS |
| AAAATGAAGATCAAATTGTG+GGG | 0.619321 | 8.1:+82680532 | None:intergenic |
| ACTCAAAAGCATACCAGATG+CGG | 0.632124 | 8.1:+82680139 | None:intergenic |
| TGTAGAACAGTATTGCCTGT+AGG | 0.633462 | 8.1:+82680683 | None:intergenic |
| TCAACGGCATTCAGGATGGG+TGG | 0.638479 | 8.1:+82679760 | None:intergenic |
| TACAAAATAGATGTAACCAA+TGG | 0.644074 | 8.1:-82680614 | MS.gene072202:CDS |
| AAATGAAGATCAAATTGTGG+GGG | 0.648294 | 8.1:+82680533 | None:intergenic |
| GTGCTCATCACAACTGCTGG+TGG | 0.649476 | 8.1:+82680057 | None:intergenic |
| CTAATGAAGCAAGAAATGAA+AGG | 0.657119 | 8.1:-82681011 | None:intergenic |
| TACAACAACTGGAATATGTG+AGG | 0.657276 | 8.1:-82680664 | MS.gene072202:CDS |
| CAACCATGTCTTGTTAACAC+AGG | 0.665613 | 8.1:-82680419 | MS.gene072202:CDS |
| AATACAGAAAGAAAACGCAA+AGG | 0.683296 | 8.1:+82680978 | None:intergenic |
| TATGTGAGGAGCTTTCCTAG+TGG | 0.692228 | 8.1:-82680650 | MS.gene072202:CDS |
| GATGCCAAATTCATAGACAG+TGG | 0.699222 | 8.1:-82680725 | MS.gene072202:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTAACTGATAATTTTTTT+TGG | - | chr8.1:82680489-82680508 | MS.gene072202:CDS | 10.0% |
| !! | CTGAATTAATATATCATCTT+TGG | + | chr8.1:82680600-82680619 | None:intergenic | 20.0% |
| !!! | AAGGGTAAATATATATTTTG+TGG | + | chr8.1:82680885-82680904 | None:intergenic | 20.0% |
| !!! | GATTAAATATTTTGTACCAT+TGG | + | chr8.1:82680094-82680113 | None:intergenic | 20.0% |
| !!! | TTTTACTTTATAAACCTCAA+CGG | + | chr8.1:82680948-82680967 | None:intergenic | 20.0% |
| ! | AAAATGAAGATCAAATTGTG+GGG | + | chr8.1:82680160-82680179 | None:intergenic | 25.0% |
| ! | AATATGTTCCTATATATCTC+AGG | - | chr8.1:82679865-82679884 | MS.gene072202:CDS | 25.0% |
| ! | CAAAATGAAGATCAAATTGT+GGG | + | chr8.1:82680161-82680180 | None:intergenic | 25.0% |
| ! | CATTACTGAATTTGAAAATC+TGG | - | chr8.1:82680742-82680761 | MS.gene072202:CDS | 25.0% |
| ! | TAATGAATCCTGAGATATAT+AGG | + | chr8.1:82679876-82679895 | None:intergenic | 25.0% |
| ! | TACAAAATAGATGTAACCAA+TGG | - | chr8.1:82680075-82680094 | MS.gene072202:CDS | 25.0% |
| ! | TGTGCAAATATATGTAGTAT+TGG | + | chr8.1:82680724-82680743 | None:intergenic | 25.0% |
| !! | ATCAGAGCTTCTTTTTATTA+TGG | - | chr8.1:82680111-82680130 | MS.gene072202:CDS | 25.0% |
| !! | TACTTCTTTCGATTTGATAT+AGG | - | chr8.1:82680384-82680403 | MS.gene072202:CDS | 25.0% |
| !!! | CAAAGGTATTGTACTAAATA+TGG | + | chr8.1:82680855-82680874 | None:intergenic | 25.0% |
| !!! | TCATTTTGGAACTAATGTTT+GGG | - | chr8.1:82680173-82680192 | MS.gene072202:intron | 25.0% |
| !!! | TTCATTTTGGAACTAATGTT+TGG | - | chr8.1:82680172-82680191 | MS.gene072202:intron | 25.0% |
| AAATGAAGATCAAATTGTGG+GGG | + | chr8.1:82680159-82680178 | None:intergenic | 30.0% | |
| AATACAGAAAGAAAACGCAA+AGG | + | chr8.1:82679714-82679733 | None:intergenic | 30.0% | |
| AATTCAATAGCCGAAATGAA+TGG | + | chr8.1:82680306-82680325 | None:intergenic | 30.0% | |
| CCAAAATGAAGATCAAATTG+TGG | + | chr8.1:82680162-82680181 | None:intergenic | 30.0% | |
| GCATCGAAACTAAATTGTAT+AGG | + | chr8.1:82680686-82680705 | None:intergenic | 30.0% | |
| GGTTGTATGTAATCTAATGA+TGG | + | chr8.1:82680255-82680274 | None:intergenic | 30.0% | |
| GTACTAAAACCAAAGTAGTA+TGG | + | chr8.1:82679746-82679765 | None:intergenic | 30.0% | |
| TATATTTACCCTTTCCAAGA+CGG | - | chr8.1:82680892-82680911 | MS.gene072202:intron | 30.0% | |
| TCATTCAATATCACAGTGAA+TGG | - | chr8.1:82680782-82680801 | MS.gene072202:CDS | 30.0% | |
| TTTAGTACAATACCTTTGAC+TGG | - | chr8.1:82680857-82680876 | MS.gene072202:intron | 30.0% | |
| ! | CCACAATTTGATCTTCATTT+TGG | - | chr8.1:82680159-82680178 | MS.gene072202:CDS | 30.0% |
| ! | TAACAATTTTTCACTCCACT+AGG | + | chr8.1:82680057-82680076 | None:intergenic | 30.0% |
| CAATACTGTTCTACAACAAC+TGG | - | chr8.1:82680014-82680033 | MS.gene072202:CDS | 35.0% | |
| CCATCACAAACTTAGAATAC+AGG | - | chr8.1:82680409-82680428 | MS.gene072202:CDS | 35.0% | |
| CCTGTATTCTAAGTTTGTGA+TGG | + | chr8.1:82680412-82680431 | None:intergenic | 35.0% | |
| GGATTCATTAGCATAGATTG+TGG | - | chr8.1:82679886-82679905 | MS.gene072202:CDS | 35.0% | |
| GTGAATGGAATCCTTATGTA+TGG | - | chr8.1:82680797-82680816 | MS.gene072202:CDS | 35.0% | |
| TAAATATGGTATCTGCTGAC+CGG | + | chr8.1:82680841-82680860 | None:intergenic | 35.0% | |
| TACAACAACTGGAATATGTG+AGG | - | chr8.1:82680025-82680044 | MS.gene072202:CDS | 35.0% | |
| TACACCACTGTCTATGAATT+TGG | + | chr8.1:82679971-82679990 | None:intergenic | 35.0% | |
| TCATTTCGGCTATTGAATTG+AGG | - | chr8.1:82680307-82680326 | MS.gene072202:CDS | 35.0% | |
| TGAATTATCCGTCTTGGAAA+GGG | + | chr8.1:82680903-82680922 | None:intergenic | 35.0% | |
| TTGAATTATCCGTCTTGGAA+AGG | + | chr8.1:82680904-82680923 | None:intergenic | 35.0% | |
| TTTGGTCATGTACAAACAAC+AGG | - | chr8.1:82680507-82680526 | MS.gene072202:CDS | 35.0% | |
| ! | ACTAAATTGTATAGGAGCAC+TGG | + | chr8.1:82680678-82680697 | None:intergenic | 35.0% |
| ! | CGTTTTCTTTCTGTATTGCT+TGG | - | chr8.1:82679717-82679736 | MS.gene072202:CDS | 35.0% |
| !!! | TTTGGTTTTAGTACAAGCTC+AGG | - | chr8.1:82679752-82679771 | MS.gene072202:CDS | 35.0% |
| AAGGGTTGAATTATCCGTCT+TGG | + | chr8.1:82680909-82680928 | None:intergenic | 40.0% | |
| AGTAAGAGGATACTACCTAC+AGG | - | chr8.1:82679991-82680010 | MS.gene072202:CDS | 40.0% | |
| ATGATGTTTATGACCGCATC+TGG | - | chr8.1:82680537-82680556 | MS.gene072202:CDS | 40.0% | |
| CAAAGGGACTCCATTCATTT+CGG | - | chr8.1:82680293-82680312 | MS.gene072202:CDS | 40.0% | |
| CTCACAATCAGAAACTCAAC+AGG | - | chr8.1:82680973-82680992 | MS.gene072202:CDS | 40.0% | |
| GATGCCAAATTCATAGACAG+TGG | - | chr8.1:82679964-82679983 | MS.gene072202:CDS | 40.0% | |
| GATTGTGATGCGTGATAGAT+TGG | + | chr8.1:82680214-82680233 | None:intergenic | 40.0% | |
| GCTTGGTATCCATACTACTT+TGG | - | chr8.1:82679734-82679753 | MS.gene072202:CDS | 40.0% | |
| GGCTATTGAATTGAGGACTT+TGG | - | chr8.1:82680314-82680333 | MS.gene072202:CDS | 40.0% | |
| GTATCTCAGGTCCATACATA+AGG | + | chr8.1:82680811-82680830 | None:intergenic | 40.0% | |
| TAGACAGTGGTGTAAGTAAG+AGG | - | chr8.1:82679977-82679996 | MS.gene072202:CDS | 40.0% | |
| TATAAACCTCAACGGCATTC+AGG | + | chr8.1:82680940-82680959 | None:intergenic | 40.0% | |
| TCAGAAACTCAACAGGATGA+TGG | - | chr8.1:82680980-82680999 | MS.gene072202:CDS | 40.0% | |
| TCTATCACGCATCACAATCA+AGG | - | chr8.1:82680215-82680234 | MS.gene072202:intron | 40.0% | |
| TGTAGAACAGTATTGCCTGT+AGG | + | chr8.1:82680009-82680028 | None:intergenic | 40.0% | |
| TTGCCTGTGTTAACAAGACA+TGG | + | chr8.1:82680276-82680295 | None:intergenic | 40.0% | |
| ! | ACTCAAAAGCATACCAGATG+CGG | + | chr8.1:82680553-82680572 | None:intergenic | 40.0% |
| ! | CAACCATGTCTTGTTAACAC+AGG | - | chr8.1:82680270-82680289 | MS.gene072202:intron | 40.0% |
| ! | GTCTTGTTAACACAGGCAAA+GGG | - | chr8.1:82680277-82680296 | MS.gene072202:intron | 40.0% |
| ! | TATTTTGTGGCTCCAGTCAA+AGG | + | chr8.1:82680872-82680891 | None:intergenic | 40.0% |
| ! | TCAGAATAGCTCGATTTTCG+AGG | + | chr8.1:82679916-82679935 | None:intergenic | 40.0% |
| ! | TGTCTTGTTAACACAGGCAA+AGG | - | chr8.1:82680276-82680295 | MS.gene072202:intron | 40.0% |
| !! | ATAGGAGCACTGGTATTTAC+TGG | + | chr8.1:82680668-82680687 | None:intergenic | 40.0% |
| GACCTGAGATACCTGTATAC+CGG | - | chr8.1:82680819-82680838 | MS.gene072202:intron | 45.0% | |
| GTACAAGCTCAGGATCAATC+AGG | - | chr8.1:82679762-82679781 | MS.gene072202:CDS | 45.0% | |
| TATGTGAGGAGCTTTCCTAG+TGG | - | chr8.1:82680039-82680058 | MS.gene072202:CDS | 45.0% | |
| ! | GCATCTGGTATGCTTTTGAG+TGG | - | chr8.1:82680552-82680571 | MS.gene072202:CDS | 45.0% |
| !! | AGCTATTCTGAGACAAGCAC+AGG | - | chr8.1:82679925-82679944 | MS.gene072202:CDS | 45.0% |
| AACCTCAACGGCATTCAGGA+TGG | + | chr8.1:82680936-82680955 | None:intergenic | 50.0% | |
| ACCTCAACGGCATTCAGGAT+GGG | + | chr8.1:82680935-82680954 | None:intergenic | 50.0% | |
| GACCGGTATACAGGTATCTC+AGG | + | chr8.1:82680824-82680843 | None:intergenic | 50.0% | |
| GTATCTGCTGACCGGTATAC+AGG | + | chr8.1:82680833-82680852 | None:intergenic | 50.0% | |
| ACCCATCCTGAATGCCGTTG+AGG | - | chr8.1:82680931-82680950 | MS.gene072202:CDS | 55.0% | |
| GCAGTGCTCATCACAACTGC+TGG | + | chr8.1:82680638-82680657 | None:intergenic | 55.0% | |
| GGCATTCAGGATGGGTGGAA+GGG | + | chr8.1:82680927-82680946 | None:intergenic | 55.0% | |
| GTGCTCATCACAACTGCTGG+TGG | + | chr8.1:82680635-82680654 | None:intergenic | 55.0% | |
| TCAACGGCATTCAGGATGGG+TGG | + | chr8.1:82680932-82680951 | None:intergenic | 55.0% | |
| CGGCATTCAGGATGGGTGGA+AGG | + | chr8.1:82680928-82680947 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 82679693 | 82681018 | 82679693 | ID=MS.gene072202 |
| chr8.1 | mRNA | 82679693 | 82681018 | 82679693 | ID=MS.gene072202.t1;Parent=MS.gene072202 |
| chr8.1 | exon | 82680928 | 82681018 | 82680928 | ID=MS.gene072202.t1.exon1;Parent=MS.gene072202.t1 |
| chr8.1 | CDS | 82680928 | 82681018 | 82680928 | ID=cds.MS.gene072202.t1;Parent=MS.gene072202.t1 |
| chr8.1 | exon | 82680281 | 82680824 | 82680281 | ID=MS.gene072202.t1.exon2;Parent=MS.gene072202.t1 |
| chr8.1 | CDS | 82680281 | 82680824 | 82680281 | ID=cds.MS.gene072202.t1;Parent=MS.gene072202.t1 |
| chr8.1 | exon | 82679693 | 82680182 | 82679693 | ID=MS.gene072202.t1.exon3;Parent=MS.gene072202.t1 |
| chr8.1 | CDS | 82679693 | 82680182 | 82679693 | ID=cds.MS.gene072202.t1;Parent=MS.gene072202.t1 |
| Gene Sequence |
| Protein sequence |
