AlfalfaGEDB | MS.gene060087

M. sativa cultivar XinJiangDaYe / MS.gene060087

KEGG: -
GO: GO:0003674 GO:0004857 GO:0004866 GO:0030234 GO:0030414 GO:0061134 GO:0061135 GO:0098772
PFAM: PF00197.21

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene060087.t1	XP_003619580.2	83.6	213	34	1	1	212	1	213	1.10E-96	362.8

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene060087.t1	Q41015	43.1	211	106	9	1	202	1	206	1.5e-30	134.4

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene060087.t1	G7KMU9	83.6	213	34	1	1	212	1	213	7.6e-97	362.8

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene04925	MS.gene060087	0.828965	6.70E-55	-1.69E-46
MS.gene04926	MS.gene060087	0.810396	1.18E-50	-1.69E-46
MS.gene04932	MS.gene060087	0.860637	1.80E-63	-1.69E-46
MS.gene049549	MS.gene060087	0.853726	1.98E-61	-1.69E-46
MS.gene049813	MS.gene060087	0.815247	1.02E-51	-1.69E-46
MS.gene050133	MS.gene060087	0.821196	4.59E-53	-1.69E-46
MS.gene050344	MS.gene060087	0.813847	2.08E-51	-1.69E-46
MS.gene050426	MS.gene060087	0.801381	9.25E-49	-1.69E-46
MS.gene050720	MS.gene060087	0.812677	3.76E-51	-1.69E-46
MS.gene051131	MS.gene060087	0.804372	2.23E-49	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene060087.t1	MTR_6g059760	83.568	213	34	1	1	212	1	213	6.08e-126	354
MS.gene060087.t1	MTR_6g059755	83.846	130	20	1	84	212	1	130	1.86e-74	221
MS.gene060087.t1	MTR_6g059650	51.598	219	91	9	1	212	1	211	1.78e-53	171
MS.gene060087.t1	MTR_6g065460	47.368	209	97	8	1	201	1	204	1.71e-46	152
MS.gene060087.t1	MTR_6g044780	43.636	220	113	8	1	212	1	217	3.07e-43	145
MS.gene060087.t1	MTR_6g045097	43.636	220	113	8	1	212	1	217	6.26e-43	144
MS.gene060087.t1	MTR_6g044810	43.119	218	113	8	1	210	1	215	2.21e-42	142
MS.gene060087.t1	MTR_6g045403	41.818	220	115	9	1	212	1	215	6.44e-40	136
MS.gene060087.t1	MTR_6g059410	45.070	213	98	9	1	207	1	200	6.37e-39	133
MS.gene060087.t1	MTR_6g059530	44.749	219	98	11	1	212	1	203	7.10e-38	130

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 57 sgRNAs with CRISPR-Local

Find 61 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAGGAAGAAATAGAGGG+TGG	0.652446	6.2:+68437582	None:intergenic
AAAGCTTGCTGTACAACAAG+TGG	0.555218	6.2:+68437406	None:intergenic
AAAGGATAATGGAAAGTAGG+TGG	0.636765	6.2:+68437552	None:intergenic
AAATACTTTATTTGGCCAGC+CGG	0.543561	6.2:-68437472	MS.gene060087:CDS
AAGGTGGTTTCATTGAACCA+TGG	0.574110	6.2:-68437240	MS.gene060087:CDS
AAGTGGGTGGTAGTTAAAGG+TGG	0.629514	6.2:-68437256	MS.gene060087:CDS
AATGGTAAGAGTATTATAGA+TGG	0.435603	6.2:-68437196	MS.gene060087:CDS
AATGTGCTGAATCCTCCAAG+TGG	0.759346	6.2:-68437273	MS.gene060087:CDS
ACAACTTGAGTAAAGGATAA+TGG	0.359989	6.2:+68437541	None:intergenic
ACATAAACCAGGTGTATCAC+TGG	0.553319	6.2:+68437114	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACAACTTGAGTAAAGGATAA+TGG	+	chr6.2:68437048-68437067	None:intergenic	30.0%
GAACAAGTGAAGGATAAAAA+TGG	-	chr6.2:68437069-68437088	MS.gene060087:CDS	30.0%
GTATTTCTTACTCACAAGAA+CGG	+	chr6.2:68437100-68437119	None:intergenic	30.0%
TATTTCTTACTCACAAGAAC+GGG	+	chr6.2:68437099-68437118	None:intergenic	30.0%
TTGTTCAACAACTTGAGTAA+AGG	+	chr6.2:68437055-68437074	None:intergenic	30.0%
ATTTCTTACTCACAAGAACG+GGG	+	chr6.2:68437098-68437117	None:intergenic	35.0%
TCTGTTGGGATAAATGTTAG+TGG	+	chr6.2:68437228-68437247	None:intergenic	35.0%
AAAGAGGAAGAAATAGAGGG+TGG	+	chr6.2:68437007-68437026	None:intergenic	40.0%
AAGGTGGTTTCATTGAACCA+TGG	-	chr6.2:68437346-68437365	MS.gene060087:CDS	40.0%
ACATAAACCAGGTGTATCAC+TGG	+	chr6.2:68437475-68437494	None:intergenic	40.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6.2	gene	68436985	68437623	68436985	ID=MS.gene060087
chr6.2	mRNA	68436985	68437623	68436985	ID=MS.gene060087.t1;Parent=MS.gene060087
chr6.2	exon	68436985	68437623	68436985	ID=MS.gene060087.t1.exon1;Parent=MS.gene060087.t1
chr6.2	CDS	68436985	68437623	68436985	ID=cds.MS.gene060087.t1;Parent=MS.gene060087.t1

Gene Sequence

>MS.gene060087

ATGAACCCTACATTACTTACCACCCTCTATTTCTTCCTCTTTGCCCTAGCCACCTACTTTCCATTATCCTTTACTCAAGTTGTTGAACAAGTGAAGGATAAAAATGGAAACCCCGTTCTTGTGAGTAAGAAATACTTTATTTGGCCAGCCGGTGAAAGTGGTGGTGGACTGAGGCTTAATGAGACAGAAGAATGTCCACTTGTTGTACAGCAAGCTTTTTCTAAGGATGTTAAAAGCCTGCCACTAACATTTATCCCAACAGAAAATATCAATGATTTCATCTTTACTGGCTTCACATCACTAGATATTGTATTTGAAAAGAAGACAAAATGTGCTGAATCCTCCAAGTGGGTGGTAGTTAAAGGTGGTTTCATTGAACCATGGGTAGGTATTGGTGGTGGTGTTAATGGTAAGAGTATTATAGATGGTTTGTTTAAGATTGAGAGAAGTGGTTTTTTTGGATACAAGCTTGTGTTTTGTCCCACCACCAGTGATACACCTGGTTTATGTAATAATATTGGAAGATTTCTTGATAATGAAAATGGAGTCCGTTTGATCATTAGTAAAAATTTTCAACCCTTTGAAGTTGTATTTGTTGATGTTGAAGATGTTGCTCGATCCAGAAGATCTGTAGTTTGA

Protein sequence

>MS.gene060087.t1

MNPTLLTTLYFFLFALATYFPLSFTQVVEQVKDKNGNPVLVSKKYFIWPAGESGGGLRLNETEECPLVVQQAFSKDVKSLPLTFIPTENINDFIFTGFTSLDIVFEKKTKCAESSKWVVVKGGFIEPWVGIGGGVNGKSIIDGLFKIERSGFFGYKLVFCPTTSDTPGLCNNIGRFLDNENGVRLIISKNFQPFEVVFVDVEDVARSRRSVV