Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072345.t1 | XP_003625175.1 | 92.4 | 158 | 11 | 1 | 26 | 183 | 55 | 211 | 1.60E-70 | 275.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072345.t1 | G7KTL5 | 92.4 | 158 | 11 | 1 | 26 | 183 | 55 | 211 | 1.2e-70 | 275.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene058197 | MS.gene072345 | 0.813617 | 2.34E-51 | -1.69E-46 |
| MS.gene058198 | MS.gene072345 | 0.817553 | 3.11E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072345.t1 | MTR_7g092270 | 92.391 | 184 | 13 | 1 | 21 | 204 | 50 | 232 | 1.76e-110 | 317 |
| MS.gene072345.t1 | MTR_3g028600 | 34.320 | 169 | 76 | 5 | 21 | 180 | 48 | 190 | 8.18e-12 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072345.t1 | AT3G52110 | 33.333 | 174 | 75 | 9 | 21 | 191 | 47 | 182 | 7.96e-11 | 60.1 |
Find 47 sgRNAs with CRISPR-Local
Find 171 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTGAAATTCTTCCATTTA+AGG | 0.041761 | 7.4:+16592174 | MS.gene072345:CDS |
| GATCTTCTATTACTTCTTTC+AGG | 0.129146 | 7.4:-16592752 | None:intergenic |
| AAACTTTACTGTAACAAATT+TGG | 0.131238 | 7.4:+16592631 | MS.gene072345:CDS |
| CTTGAACAATTGGGTCTTCT+AGG | 0.208167 | 7.4:-16592575 | None:intergenic |
| CTTCGATTTCTATCCTTAAA+TGG | 0.242020 | 7.4:-16592187 | None:intergenic |
| ATCCATGTTTCTTGAACAAT+TGG | 0.261018 | 7.4:-16592585 | None:intergenic |
| AAGAAGATCTTGAGAAATCT+TGG | 0.309017 | 7.4:-16591972 | None:intergenic |
| GGAAAATCCTTCAGCTGTTA+AGG | 0.334128 | 7.4:+16592541 | MS.gene072345:CDS |
| AAATTTGTTACAGTAAAGTT+TGG | 0.339133 | 7.4:-16592629 | None:intergenic |
| GCAGGCAAAGTTATTAAGAT+TGG | 0.355508 | 7.4:+16592144 | MS.gene072345:intron |
| CAACGGCTTCTTTAGCTTGT+TGG | 0.356140 | 7.4:-16592663 | None:intergenic |
| TCAAGAATGAGACGGATTCT+TGG | 0.366285 | 7.4:+16590469 | None:intergenic |
| CTCAAAATTTATTGGGTGGC+AGG | 0.386361 | 7.4:+16592798 | MS.gene072345:CDS |
| TGAGGTAGTAACCTTGGAAT+TGG | 0.388500 | 7.4:-16592017 | None:intergenic |
| ATCACACAAGGCGACATATA+AGG | 0.407637 | 7.4:-16590532 | None:intergenic |
| TTGGTCGTGGTTGTAGTTGT+GGG | 0.420054 | 7.4:-16591998 | None:intergenic |
| AGAAGATCTTGAGAAATCTT+GGG | 0.443856 | 7.4:-16591971 | None:intergenic |
| GCGACATATAAGGACTTAAC+CGG | 0.453816 | 7.4:-16590522 | None:intergenic |
| GAGAAGGGCTCAAATTCAAA+TGG | 0.468513 | 7.4:+16592908 | MS.gene072345:CDS |
| ATTGGTCGTGGTTGTAGTTG+TGG | 0.472270 | 7.4:-16591999 | None:intergenic |
| GAAATTCTAAGTCAAATCAC+AGG | 0.477001 | 7.4:+16592821 | MS.gene072345:CDS |
| CTGTAACAAATTTGGATGGT+GGG | 0.481657 | 7.4:+16592639 | MS.gene072345:CDS |
| TGGAAGAATTTCAGAAAAGC+TGG | 0.482092 | 7.4:-16592167 | None:intergenic |
| TCCATGTTTCTTGAACAATT+GGG | 0.492758 | 7.4:-16592584 | None:intergenic |
| AGGAAGGGTTCTACTAAGAA+AGG | 0.503091 | 7.4:+16592875 | MS.gene072345:CDS |
| TCACAATCCTTAACAGCTGA+AGG | 0.510472 | 7.4:-16592548 | None:intergenic |
| TCAAAATTTATTGGGTGGCA+GGG | 0.533924 | 7.4:+16592799 | MS.gene072345:CDS |
| TTTACTGTAACAAATTTGGA+TGG | 0.540080 | 7.4:+16592635 | MS.gene072345:CDS |
| ACTGTAACAAATTTGGATGG+TGG | 0.552283 | 7.4:+16592638 | MS.gene072345:CDS |
| AGTAACCTTGGAATTGGTCG+TGG | 0.559793 | 7.4:-16592011 | None:intergenic |
| ACCCAATTGTTCAAGAAACA+TGG | 0.569834 | 7.4:+16592583 | MS.gene072345:CDS |
| GAAGAGGCTAGCAACAAGGA+AGG | 0.590240 | 7.4:+16592859 | MS.gene072345:CDS |
| TACAACCACGACCAATTCCA+AGG | 0.592894 | 7.4:+16592006 | MS.gene072345:CDS |
| AGGGTTCTACTAAGAAAGGA+GGG | 0.601335 | 7.4:+16592879 | MS.gene072345:CDS |
| GGGTTCTACTAAGAAAGGAG+GGG | 0.602916 | 7.4:+16592880 | MS.gene072345:CDS |
| TCAGCTCAAAATTTATTGGG+TGG | 0.604858 | 7.4:+16592794 | MS.gene072345:CDS |
| GGTTCTACTAAGAAAGGAGG+GGG | 0.607034 | 7.4:+16592881 | MS.gene072345:CDS |
| CTTCTATTACTTCTTTCAGG+AGG | 0.613198 | 7.4:-16592749 | None:intergenic |
| AAGAGGCTAGCAACAAGGAA+GGG | 0.620914 | 7.4:+16592860 | MS.gene072345:CDS |
| AATTGAAGAGGCTAGCAACA+AGG | 0.623685 | 7.4:+16592855 | MS.gene072345:CDS |
| AGCTAAAGAAGCCGTTGTTG+AGG | 0.625737 | 7.4:+16592669 | MS.gene072345:CDS |
| TTTGACTTTGACCTCAACAA+CGG | 0.631431 | 7.4:-16592680 | None:intergenic |
| ACCTATGATCAAGAATGAGA+CGG | 0.637844 | 7.4:+16590461 | None:intergenic |
| AAGGGTTCTACTAAGAAAGG+AGG | 0.646202 | 7.4:+16592878 | MS.gene072345:CDS |
| CATTTAAGGATAGAAATCGA+AGG | 0.656115 | 7.4:+16592188 | MS.gene072345:CDS |
| AAATTCTAAGTCAAATCACA+GGG | 0.672961 | 7.4:+16592822 | MS.gene072345:CDS |
| GTTCTACTAAGAAAGGAGGG+GGG | 0.794134 | 7.4:+16592882 | MS.gene072345:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AACAACAAAATAATTTTATT+AGG | - | chr7.4:16590930-16590949 | None:intergenic | 10.0% |
| !!! | TTAATTAATTTTTCAACAAA+GGG | + | chr7.4:16591461-16591480 | MS.gene072345:intron | 10.0% |
| !! | AAAATAAATTCATGATGAAT+TGG | - | chr7.4:16591161-16591180 | None:intergenic | 15.0% |
| !! | AAATAAATTCATGATGAATT+GGG | - | chr7.4:16591160-16591179 | None:intergenic | 15.0% |
| !! | ACCATGAAATTAATATATTT+AGG | + | chr7.4:16590985-16591004 | MS.gene072345:intron | 15.0% |
| !! | ATTATGTTGTATATGTATTA+GGG | + | chr7.4:16592520-16592539 | MS.gene072345:intron | 15.0% |
| !! | TAAATATATTAATTTCATGG+TGG | - | chr7.4:16590986-16591005 | None:intergenic | 15.0% |
| !! | TATTATGTTGTATATGTATT+AGG | + | chr7.4:16592519-16592538 | MS.gene072345:intron | 15.0% |
| !! | TCCTAAATATATTAATTTCA+TGG | - | chr7.4:16590989-16591008 | None:intergenic | 15.0% |
| !!! | ATTGCATAATTTTTAGTTTT+TGG | - | chr7.4:16592091-16592110 | None:intergenic | 15.0% |
| !!! | CTTAATTAATTTTTCAACAA+AGG | + | chr7.4:16591460-16591479 | MS.gene072345:intron | 15.0% |
| !!! | GTATCATATTAGTAATTTTA+TGG | - | chr7.4:16592367-16592386 | None:intergenic | 15.0% |
| !!! | TATACTCTAAAATATAGAAA+GGG | + | chr7.4:16591319-16591338 | MS.gene072345:intron | 15.0% |
| !!! | TCTTTTTAATAGATTTGATT+TGG | - | chr7.4:16592216-16592235 | None:intergenic | 15.0% |
| !! | AAACTTTACTGTAACAAATT+TGG | + | chr7.4:16592631-16592650 | MS.gene072345:CDS | 20.0% |
| !! | AATATATTCAATGTAACGTT+TGG | - | chr7.4:16591431-16591450 | None:intergenic | 20.0% |
| !! | AATCCAAAAGAAAAATTCAA+TGG | - | chr7.4:16591045-16591064 | None:intergenic | 20.0% |
| !! | ACTCAATCAAGAAAAAAAAA+TGG | - | chr7.4:16591257-16591276 | None:intergenic | 20.0% |
| !! | ATATATTCAATGTAACGTTT+GGG | - | chr7.4:16591430-16591449 | None:intergenic | 20.0% |
| !! | ATCCAAAAGAAAAATTCAAT+GGG | - | chr7.4:16591044-16591063 | None:intergenic | 20.0% |
| !! | TACTAATATGATACATTCAA+AGG | + | chr7.4:16592373-16592392 | MS.gene072345:intron | 20.0% |
| !! | TGAGAAAAAAACAAAAATTG+AGG | - | chr7.4:16592038-16592057 | None:intergenic | 20.0% |
| !! | TTCTGTTAATGTAATGATAA+TGG | - | chr7.4:16591638-16591657 | None:intergenic | 20.0% |
| !!! | AAATTTGTTACAGTAAAGTT+TGG | - | chr7.4:16592632-16592651 | None:intergenic | 20.0% |
| !!! | ATTTTCAGCTCAAAATTTAT+TGG | + | chr7.4:16592790-16592809 | MS.gene072345:CDS | 20.0% |
| !!! | CTATACTCTAAAATATAGAA+AGG | + | chr7.4:16591318-16591337 | MS.gene072345:intron | 20.0% |
| !!! | TAAAAAGAGTAAAGCTATTT+TGG | + | chr7.4:16592228-16592247 | MS.gene072345:intron | 20.0% |
| !!! | TATCTTTGAATGTGTTATTA+TGG | + | chr7.4:16592308-16592327 | MS.gene072345:intron | 20.0% |
| !!! | TCTTAGCTTTAGTTTTTTAA+GGG | - | chr7.4:16592474-16592493 | None:intergenic | 20.0% |
| !!! | TCTTTTTTTAACTTTTCAGA+TGG | + | chr7.4:16591703-16591722 | MS.gene072345:intron | 20.0% |
| !!! | TTCTTAGCTTTAGTTTTTTA+AGG | - | chr7.4:16592475-16592494 | None:intergenic | 20.0% |
| !!! | TTTTCAGCTCAAAATTTATT+GGG | + | chr7.4:16592791-16592810 | MS.gene072345:CDS | 20.0% |
| ! | AAAAAGCGATAATACATTGA+AGG | - | chr7.4:16592255-16592274 | None:intergenic | 25.0% |
| ! | AAATTCTAAGTCAAATCACA+GGG | + | chr7.4:16592822-16592841 | MS.gene072345:CDS | 25.0% |
| ! | ATAAATAGAGTGATCTTGTT+CGG | + | chr7.4:16590777-16590796 | MS.gene072345:intron | 25.0% |
| ! | CTGAAAAGTTAAAAAAAGAG+AGG | - | chr7.4:16591702-16591721 | None:intergenic | 25.0% |
| ! | GAAAAAATTTGAACATTTCG+AGG | - | chr7.4:16590631-16590650 | None:intergenic | 25.0% |
| ! | GTATATTTATCAATGCCAAT+GGG | - | chr7.4:16591088-16591107 | None:intergenic | 25.0% |
| ! | TATATTTATCAATGCCAATG+GGG | - | chr7.4:16591087-16591106 | None:intergenic | 25.0% |
| ! | TCCAAAAGAAAAATTCAATG+GGG | - | chr7.4:16591043-16591062 | None:intergenic | 25.0% |
| ! | TGTATATTTATCAATGCCAA+TGG | - | chr7.4:16591089-16591108 | None:intergenic | 25.0% |
| ! | TTATACATATCTACTAGCAT+AGG | + | chr7.4:16591182-16591201 | MS.gene072345:intron | 25.0% |
| ! | TTTACTGTAACAAATTTGGA+TGG | + | chr7.4:16592635-16592654 | MS.gene072345:CDS | 25.0% |
| !! | CGAAAATTCTAATACTTTTC+CGG | + | chr7.4:16590503-16590522 | MS.gene072345:CDS | 25.0% |
| !! | TCTAAAATATAGAAAGGGAA+AGG | + | chr7.4:16591324-16591343 | MS.gene072345:intron | 25.0% |
| !!! | ATTATCTTCATTTTTCTTGC+AGG | + | chr7.4:16592126-16592145 | MS.gene072345:intron | 25.0% |
| !!! | GAAATGTTCAAATTTTTTCG+TGG | + | chr7.4:16590632-16590651 | MS.gene072345:intron | 25.0% |
| !!! | TGATACATTCAAAGGTATTA+TGG | + | chr7.4:16592381-16592400 | MS.gene072345:intron | 25.0% |
| !!! | TTCATCTTTGTTTTTCTCTA+TGG | - | chr7.4:16591287-16591306 | None:intergenic | 25.0% |
| !!! | TTCTGAAATTCTTCCATTTA+AGG | + | chr7.4:16592174-16592193 | MS.gene072345:CDS | 25.0% |
| AAAAATTGAGGTAGTAACCT+TGG | - | chr7.4:16592026-16592045 | None:intergenic | 30.0% | |
| AAGAAGATCTTGAGAAATCT+TGG | - | chr7.4:16591975-16591994 | None:intergenic | 30.0% | |
| AATATCAAACGATTCTCTCT+TGG | - | chr7.4:16591403-16591422 | None:intergenic | 30.0% | |
| ACAAATGAAGTTGTATTGTG+TGG | - | chr7.4:16591565-16591584 | None:intergenic | 30.0% | |
| AGAAGATCTTGAGAAATCTT+GGG | - | chr7.4:16591974-16591993 | None:intergenic | 30.0% | |
| ATCCATGTTTCTTGAACAAT+TGG | - | chr7.4:16592588-16592607 | None:intergenic | 30.0% | |
| CAAAATTGCAATCATGTCTA+TGG | - | chr7.4:16591219-16591238 | None:intergenic | 30.0% | |
| CATTTAAGGATAGAAATCGA+AGG | + | chr7.4:16592188-16592207 | MS.gene072345:CDS | 30.0% | |
| CTTCGATTTCTATCCTTAAA+TGG | - | chr7.4:16592190-16592209 | None:intergenic | 30.0% | |
| GAAATTCTAAGTCAAATCAC+AGG | + | chr7.4:16592821-16592840 | MS.gene072345:CDS | 30.0% | |
| GATCTTCTATTACTTCTTTC+AGG | - | chr7.4:16592755-16592774 | None:intergenic | 30.0% | |
| GTAAGTATCATCATGAATGA+AGG | - | chr7.4:16591765-16591784 | None:intergenic | 30.0% | |
| TATTAACAAAGTCATTCTCC+TGG | + | chr7.4:16591370-16591389 | MS.gene072345:intron | 30.0% | |
| TCCATGTTTCTTGAACAATT+GGG | - | chr7.4:16592587-16592606 | None:intergenic | 30.0% | |
| TGGAACAAGAAAACATTGAT+TGG | + | chr7.4:16591723-16591742 | MS.gene072345:intron | 30.0% | |
| TTTGGTATGACATCGTTAAA+TGG | + | chr7.4:16590751-16590770 | MS.gene072345:intron | 30.0% | |
| ! | AAAGGAGTGTATAAGCAAAA+AGG | + | chr7.4:16591342-16591361 | MS.gene072345:intron | 30.0% |
| ! | AAGGAGTGTATAAGCAAAAA+GGG | + | chr7.4:16591343-16591362 | MS.gene072345:intron | 30.0% |
| ! | ACCCCATTGAATTTTTCTTT+TGG | + | chr7.4:16591039-16591058 | MS.gene072345:intron | 30.0% |
| ! | AGTACCTCTTTTACTTACAT+CGG | + | chr7.4:16590872-16590891 | MS.gene072345:intron | 30.0% |
| ! | ATGATGATGATGATGAAATC+TGG | + | chr7.4:16591846-16591865 | MS.gene072345:intron | 30.0% |
| ! | GGAACAAGAAAACATTGATT+GGG | + | chr7.4:16591724-16591743 | MS.gene072345:intron | 30.0% |
| ! | TTTTCGTGGCAATTAATTCT+TGG | + | chr7.4:16590646-16590665 | MS.gene072345:intron | 30.0% |
| ! | TTTTGCAGGTATATCCATTA+AGG | + | chr7.4:16591128-16591147 | MS.gene072345:intron | 30.0% |
| !! | AAAAGGTATTTGGGTTAGTT+GGG | + | chr7.4:16590603-16590622 | MS.gene072345:intron | 30.0% |
| !! | AATATATGCTTAGCTTTTGC+AGG | + | chr7.4:16591114-16591133 | MS.gene072345:intron | 30.0% |
| !! | TGTTCGGAATGTATTTTGAA+TGG | + | chr7.4:16590793-16590812 | MS.gene072345:intron | 30.0% |
| !! | TTCTAGCTCAATTTCTTTGA+TGG | + | chr7.4:16591902-16591921 | MS.gene072345:intron | 30.0% |
| !!! | CTTTGTTTTTCTCTATGGAA+GGG | - | chr7.4:16591282-16591301 | None:intergenic | 30.0% |
| !!! | TCTTTGTTTTTCTCTATGGA+AGG | - | chr7.4:16591283-16591302 | None:intergenic | 30.0% |
| ACCCAATTGTTCAAGAAACA+TGG | + | chr7.4:16592583-16592602 | MS.gene072345:CDS | 35.0% | |
| ACTGTAACAAATTTGGATGG+TGG | + | chr7.4:16592638-16592657 | MS.gene072345:CDS | 35.0% | |
| AGGAAGAAGTTTATCACACA+AGG | - | chr7.4:16590547-16590566 | None:intergenic | 35.0% | |
| AGTATCATCATGAATGAAGG+TGG | - | chr7.4:16591762-16591781 | None:intergenic | 35.0% | |
| CACTAGGAATTGAGACAAAA+AGG | - | chr7.4:16590828-16590847 | None:intergenic | 35.0% | |
| CTCAAAAAACAACACCTCTT+TGG | + | chr7.4:16591603-16591622 | MS.gene072345:intron | 35.0% | |
| CTGTAACAAATTTGGATGGT+GGG | + | chr7.4:16592639-16592658 | MS.gene072345:CDS | 35.0% | |
| CTTCTATTACTTCTTTCAGG+AGG | - | chr7.4:16592752-16592771 | None:intergenic | 35.0% | |
| GAATTGGGTATGAACCTTAA+TGG | - | chr7.4:16591145-16591164 | None:intergenic | 35.0% | |
| GCAGGCAAAGTTATTAAGAT+TGG | + | chr7.4:16592144-16592163 | MS.gene072345:intron | 35.0% | |
| TCAAAATTTATTGGGTGGCA+GGG | + | chr7.4:16592799-16592818 | MS.gene072345:CDS | 35.0% | |
| TCAGCTCAAAATTTATTGGG+TGG | + | chr7.4:16592794-16592813 | MS.gene072345:CDS | 35.0% | |
| TCATCATCATCATCAACAAG+AGG | - | chr7.4:16591839-16591858 | None:intergenic | 35.0% | |
| TCTACCAACTAAACACAATC+TGG | - | chr7.4:16590730-16590749 | None:intergenic | 35.0% | |
| TGGAAGAATTTCAGAAAAGC+TGG | - | chr7.4:16592170-16592189 | None:intergenic | 35.0% | |
| TGTTCCAGATTGTGTTTAGT+TGG | + | chr7.4:16590723-16590742 | MS.gene072345:intron | 35.0% | |
| TTACAACAAATTCGACCGTT+GGG | - | chr7.4:16591488-16591507 | None:intergenic | 35.0% | |
| TTGTCTCAATTCCTAGTGTA+AGG | + | chr7.4:16590830-16590849 | MS.gene072345:intron | 35.0% | |
| TTTACAACAAATTCGACCGT+TGG | - | chr7.4:16591489-16591508 | None:intergenic | 35.0% | |
| ! | TTTGACTTTGACCTCAACAA+CGG | - | chr7.4:16592683-16592702 | None:intergenic | 35.0% |
| !! | AAGTGGGTTGAAAAGGTATT+TGG | + | chr7.4:16590593-16590612 | MS.gene072345:intron | 35.0% |
| !! | AGTGGGTTGAAAAGGTATTT+GGG | + | chr7.4:16590594-16590613 | MS.gene072345:intron | 35.0% |
| !! | GAAAAGGTATTTGGGTTAGT+TGG | + | chr7.4:16590602-16590621 | MS.gene072345:intron | 35.0% |
| !! | TGTGTTTAGTTGGTAGACTT+TGG | + | chr7.4:16590733-16590752 | MS.gene072345:intron | 35.0% |
| AAGGGTTCTACTAAGAAAGG+AGG | + | chr7.4:16592878-16592897 | MS.gene072345:CDS | 40.0% | |
| AATGGTTGAAACAGCCAAAG+AGG | - | chr7.4:16591620-16591639 | None:intergenic | 40.0% | |
| AATTGAAGAGGCTAGCAACA+AGG | + | chr7.4:16592855-16592874 | MS.gene072345:CDS | 40.0% | |
| AGCTCCGATGTAAGTAAAAG+AGG | - | chr7.4:16590879-16590898 | None:intergenic | 40.0% | |
| AGGAAGGGTTCTACTAAGAA+AGG | + | chr7.4:16592875-16592894 | MS.gene072345:CDS | 40.0% | |
| AGGGTTCTACTAAGAAAGGA+GGG | + | chr7.4:16592879-16592898 | MS.gene072345:CDS | 40.0% | |
| ATCACACAAGGCGACATATA+AGG | - | chr7.4:16590535-16590554 | None:intergenic | 40.0% | |
| ATCATCAACAAGAGGCTCAT+TGG | - | chr7.4:16591831-16591850 | None:intergenic | 40.0% | |
| CAAAGCAAACACCTTACACT+AGG | - | chr7.4:16590844-16590863 | None:intergenic | 40.0% | |
| CGTGGCAATTAATTCTTGGA+AGG | + | chr7.4:16590650-16590669 | MS.gene072345:intron | 40.0% | |
| CTCAAAATTTATTGGGTGGC+AGG | + | chr7.4:16592798-16592817 | MS.gene072345:CDS | 40.0% | |
| CTTGAACAATTGGGTCTTCT+AGG | - | chr7.4:16592578-16592597 | None:intergenic | 40.0% | |
| GAGAAGGGCTCAAATTCAAA+TGG | + | chr7.4:16592908-16592927 | MS.gene072345:CDS | 40.0% | |
| GCGACATATAAGGACTTAAC+CGG | - | chr7.4:16590525-16590544 | None:intergenic | 40.0% | |
| GGAAAATCCTTCAGCTGTTA+AGG | + | chr7.4:16592541-16592560 | MS.gene072345:CDS | 40.0% | |
| TAGAGGGAATCTAGCTACAA+GGG | + | chr7.4:16590681-16590700 | MS.gene072345:intron | 40.0% | |
| TCACAATCCTTAACAGCTGA+AGG | - | chr7.4:16592551-16592570 | None:intergenic | 40.0% | |
| TCGTTCCTAAATGTGTGACA+CGG | - | chr7.4:16592436-16592455 | None:intergenic | 40.0% | |
| TGAGGTAGTAACCTTGGAAT+TGG | - | chr7.4:16592020-16592039 | None:intergenic | 40.0% | |
| TTCTTAAAGAGTTGCCCCAT+TGG | + | chr7.4:16591070-16591089 | MS.gene072345:intron | 40.0% | |
| TTTACTTACATCGGAGCTGT+GGG | + | chr7.4:16590881-16590900 | MS.gene072345:intron | 40.0% | |
| ! | AGCTGTGGGTTGAGTATTTA+TGG | + | chr7.4:16590895-16590914 | MS.gene072345:intron | 40.0% |
| ! | CTAGTGTAAGGTGTTTGCTT+TGG | + | chr7.4:16590842-16590861 | MS.gene072345:intron | 40.0% |
| ! | GGATTAAACTGACTCACAGA+AGG | - | chr7.4:16592346-16592365 | None:intergenic | 40.0% |
| ! | TGTAAGGTGTTTGCTTTGGT+GGG | + | chr7.4:16590846-16590865 | MS.gene072345:intron | 40.0% |
| ! | TTTTACTTACATCGGAGCTG+TGG | + | chr7.4:16590880-16590899 | MS.gene072345:intron | 40.0% |
| ! | TTTTCAACAAAGGGTCCCAA+CGG | + | chr7.4:16591470-16591489 | MS.gene072345:intron | 40.0% |
| !! | GGTTTTGCTCTGAATTGAAG+AGG | + | chr7.4:16592843-16592862 | MS.gene072345:CDS | 40.0% |
| !! | GTCTTCAAAGTGGGTTGAAA+AGG | + | chr7.4:16590586-16590605 | MS.gene072345:intron | 40.0% |
| !!! | GAAATCTGGTTTTGCACTCA+AGG | + | chr7.4:16591860-16591879 | MS.gene072345:intron | 40.0% |
| AAACGATTCTCTCTTGGACG+TGG | - | chr7.4:16591397-16591416 | None:intergenic | 45.0% | |
| AAGAGGCTAGCAACAAGGAA+GGG | + | chr7.4:16592860-16592879 | MS.gene072345:CDS | 45.0% | |
| AAGGTGAGGCTTTCTTCAAC+AGG | + | chr7.4:16591879-16591898 | MS.gene072345:intron | 45.0% | |
| AGACCCACACTCAAAGAAGT+AGG | - | chr7.4:16590570-16590589 | None:intergenic | 45.0% | |
| AGAGGGAATCTAGCTACAAG+GGG | + | chr7.4:16590682-16590701 | MS.gene072345:intron | 45.0% | |
| AGCAGAGAGATCAACCCATT+TGG | - | chr7.4:16591804-16591823 | None:intergenic | 45.0% | |
| AGCTAAAGAAGCCGTTGTTG+AGG | + | chr7.4:16592669-16592688 | MS.gene072345:CDS | 45.0% | |
| AGTAACCTTGGAATTGGTCG+TGG | - | chr7.4:16592014-16592033 | None:intergenic | 45.0% | |
| ATCAACAAGAGGCTCATTGG+AGG | - | chr7.4:16591828-16591847 | None:intergenic | 45.0% | |
| ATTGGTCGTGGTTGTAGTTG+TGG | - | chr7.4:16592002-16592021 | None:intergenic | 45.0% | |
| CCTCCTACTTCTTTGAGTGT+GGG | + | chr7.4:16590564-16590583 | MS.gene072345:intron | 45.0% | |
| GCAGAGAGATCAACCCATTT+GGG | - | chr7.4:16591803-16591822 | None:intergenic | 45.0% | |
| GGGTTCTACTAAGAAAGGAG+GGG | + | chr7.4:16592880-16592899 | MS.gene072345:CDS | 45.0% | |
| GGTTCTACTAAGAAAGGAGG+GGG | + | chr7.4:16592881-16592900 | MS.gene072345:CDS | 45.0% | |
| GTAGAGGGAATCTAGCTACA+AGG | + | chr7.4:16590680-16590699 | MS.gene072345:intron | 45.0% | |
| GTAGCTAGATTCCCTCTACT+AGG | - | chr7.4:16590679-16590698 | None:intergenic | 45.0% | |
| GTTCTACTAAGAAAGGAGGG+GGG | + | chr7.4:16592882-16592901 | MS.gene072345:CDS | 45.0% | |
| TACAACCACGACCAATTCCA+AGG | + | chr7.4:16592006-16592025 | MS.gene072345:CDS | 45.0% | |
| TCCTCCTACTTCTTTGAGTG+TGG | + | chr7.4:16590563-16590582 | MS.gene072345:intron | 45.0% | |
| TGAGTGTGGGTCTTCAAAGT+GGG | + | chr7.4:16590577-16590596 | MS.gene072345:intron | 45.0% | |
| TTGAGTGTGGGTCTTCAAAG+TGG | + | chr7.4:16590576-16590595 | MS.gene072345:intron | 45.0% | |
| TTGGAAGGCTTCCTAGTAGA+GGG | + | chr7.4:16590665-16590684 | MS.gene072345:intron | 45.0% | |
| TTGGTCGTGGTTGTAGTTGT+GGG | - | chr7.4:16592001-16592020 | None:intergenic | 45.0% | |
| ! | GTGTAAGGTGTTTGCTTTGG+TGG | + | chr7.4:16590845-16590864 | MS.gene072345:intron | 45.0% |
| !! | CAACGGCTTCTTTAGCTTGT+TGG | - | chr7.4:16592666-16592685 | None:intergenic | 45.0% |
| AAAGGAGGGGGGAATGAGAA+GGG | + | chr7.4:16592893-16592912 | MS.gene072345:CDS | 50.0% | |
| CCCACACTCAAAGAAGTAGG+AGG | - | chr7.4:16590567-16590586 | None:intergenic | 50.0% | |
| CGAGACCGTGTCACACATTT+AGG | + | chr7.4:16592428-16592447 | MS.gene072345:intron | 50.0% | |
| CTTGGAAGGCTTCCTAGTAG+AGG | + | chr7.4:16590664-16590683 | MS.gene072345:intron | 50.0% | |
| GAAGAGGCTAGCAACAAGGA+AGG | + | chr7.4:16592859-16592878 | MS.gene072345:CDS | 50.0% | |
| !! | AGCTACAAGGGGTGTTCTGT+CGG | + | chr7.4:16590693-16590712 | MS.gene072345:intron | 50.0% |
| !!! | CTGGTTTTGCACTCAAGGTG+AGG | + | chr7.4:16591865-16591884 | MS.gene072345:intron | 50.0% |
| AGAACTTCGACGCGCCCAAA+TGG | + | chr7.4:16591786-16591805 | MS.gene072345:intron | 55.0% | |
| GAAAGGAGGGGGGAATGAGA+AGG | + | chr7.4:16592892-16592911 | MS.gene072345:CDS | 55.0% | |
| GAACTTCGACGCGCCCAAAT+GGG | + | chr7.4:16591787-16591806 | MS.gene072345:intron | 55.0% | |
| TTCTCTCTTGGACGTGGACC+AGG | - | chr7.4:16591391-16591410 | None:intergenic | 55.0% | |
| !! | GCTACAAGGGGTGTTCTGTC+GGG | + | chr7.4:16590694-16590713 | MS.gene072345:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 16590475 | 16592952 | 16590475 | ID=MS.gene072345 |
| chr7.4 | mRNA | 16590475 | 16592952 | 16590475 | ID=MS.gene072345.t1;Parent=MS.gene072345 |
| chr7.4 | exon | 16590475 | 16590547 | 16590475 | ID=MS.gene072345.t1.exon1;Parent=MS.gene072345.t1 |
| chr7.4 | CDS | 16590475 | 16590547 | 16590475 | ID=cds.MS.gene072345.t1;Parent=MS.gene072345.t1 |
| chr7.4 | exon | 16591960 | 16592027 | 16591960 | ID=MS.gene072345.t1.exon2;Parent=MS.gene072345.t1 |
| chr7.4 | CDS | 16591960 | 16592027 | 16591960 | ID=cds.MS.gene072345.t1;Parent=MS.gene072345.t1 |
| chr7.4 | exon | 16592148 | 16592209 | 16592148 | ID=MS.gene072345.t1.exon3;Parent=MS.gene072345.t1 |
| chr7.4 | CDS | 16592148 | 16592209 | 16592148 | ID=cds.MS.gene072345.t1;Parent=MS.gene072345.t1 |
| chr7.4 | exon | 16592541 | 16592952 | 16592541 | ID=MS.gene072345.t1.exon4;Parent=MS.gene072345.t1 |
| chr7.4 | CDS | 16592541 | 16592952 | 16592541 | ID=cds.MS.gene072345.t1;Parent=MS.gene072345.t1 |
| Gene Sequence |
| Protein sequence |
