AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene072355

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene072355.t1 MTR_7g092450 97.600 125 3 0 2 126 21 145 6.31e-85 244
MS.gene072355.t1 MTR_0019s0160 94.231 104 6 0 23 126 41 144 3.32e-60 182
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene072355.t1 AT5G51940 85.586 111 14 1 16 126 36 144 3.21e-65 194
MS.gene072355.t1 AT2G04630 83.784 111 16 1 16 126 36 144 2.04e-63 190

Find 48 sgRNAs with CRISPR-Local

Find 199 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATATACTTGGAAGTCCTTC+TGG 0.228416 7.2:+16631295 None:intergenic
CCGCTCTCGTAGCTCCTTCA+TGG 0.261897 7.2:+16628762 None:intergenic
AGGTCATCATTCTTGTTATC+AGG 0.290460 7.2:+16631380 None:intergenic
ACCACCCACTTGTCTCTTCC+AGG 0.359364 7.2:+16628540 None:intergenic
AAGTAGCGACGGATGGTAAA+AGG 0.371530 7.2:+16628733 None:intergenic
GTCCTTCTGGGACGTTCAAC+CGG 0.388301 7.2:+16631308 None:intergenic
GTACCCGCGCTCTTCAAATC+AGG 0.398664 7.2:-16631244 MS.gene072355:intron
AACTCTTCAGATTGCCATGA+AGG 0.418174 7.2:-16628776 MS.gene072355:intron
ATTGTCCAGCTATGAAGATT+GGG 0.418900 7.2:-16628590 MS.gene072355:intron
ACCAATTGAAACTGAGGAAA+AGG 0.424157 7.2:-16631342 MS.gene072355:CDS
TATGAGCGTGCTAGGATTCT+CGG 0.433316 7.2:-16631266 MS.gene072355:CDS
AATTGTCCAGCTATGAAGAT+TGG 0.435283 7.2:-16628591 MS.gene072355:intron
CTCATACTTAGTCATATACT+TGG 0.444475 7.2:+16631283 None:intergenic
ACCTGTCATGGTTGAGTTGG+AGG 0.445018 7.2:-16629840 MS.gene072355:CDS
AGCTGATTGTGGAAGACTCC+TGG 0.445700 7.2:-16628558 MS.gene072355:CDS
AGTAGTATTTACCTTCCATC+AGG 0.479574 7.2:+16628709 None:intergenic
ATATACTTGGAAGTCCTTCT+GGG 0.481308 7.2:+16631296 None:intergenic
CCCTCCAACTCAACCATGAC+AGG 0.481823 7.2:+16629839 None:intergenic
TTGGTTCTCCTTCTGCATCT+AGG 0.484900 7.2:+16631360 None:intergenic
AATGGTTAAATTACCTCAAG+TGG 0.493654 7.2:+16629806 None:intergenic
CCTGTCATGGTTGAGTTGGA+GGG 0.500999 7.2:-16629839 MS.gene072355:CDS
GCAGGAAGGTGCAGAGGAGG+AGG 0.505888 7.2:-16631405 MS.gene072355:CDS
GGGAGTTGATGAGCTGATTG+TGG 0.508386 7.2:-16628569 MS.gene072355:CDS
GGAAAAGGAAGATGCTGCTC+CGG 0.509327 7.2:-16631327 MS.gene072355:CDS
TGACTAAGTATGAGCGTGCT+AGG 0.520533 7.2:-16631274 MS.gene072355:CDS
ATCCGTCGCTACTTGCCTGA+TGG 0.540830 7.2:-16628724 MS.gene072355:CDS
TGCACCTGTCATGGTTGAGT+TGG 0.547769 7.2:-16629843 MS.gene072355:CDS
TTCCATCAGGCAAGTAGCGA+CGG 0.559984 7.2:+16628722 None:intergenic
TGTGCAGGAAGGTGCAGAGG+AGG 0.563259 7.2:-16631408 MS.gene072355:CDS
TTGATGATTGATGCATGTGC+AGG 0.579297 7.2:-16631423 None:intergenic
GTCGCTACTTGCCTGATGGA+AGG 0.581718 7.2:-16628720 MS.gene072355:intron
AAACCTGATTTGAAGAGCGC+GGG 0.585792 7.2:+16631241 None:intergenic
GACTCCTGGAAGAGACAAGT+GGG 0.586530 7.2:-16628544 MS.gene072355:CDS
AGGAGAACCAATTGAAACTG+AGG 0.593065 7.2:-16631348 MS.gene072355:CDS
CAGTATGAATGCACCTGTCA+TGG 0.596445 7.2:-16629852 MS.gene072355:CDS
CTCCGGTTGAACGTCCCAGA+AGG 0.600340 7.2:-16631310 MS.gene072355:CDS
ATCAGGCAAGTAGCGACGGA+TGG 0.606515 7.2:+16628726 None:intergenic
CTGTCATGGTTGAGTTGGAG+GGG 0.614709 7.2:-16629838 MS.gene072355:CDS
AATGATGACCTAGATGCAGA+AGG 0.620982 7.2:-16631368 MS.gene072355:CDS
TGTCATGGTTGAGTTGGAGG+GGG 0.622677 7.2:-16629837 MS.gene072355:CDS
TAAACCTGATTTGAAGAGCG+CGG 0.623407 7.2:+16631240 None:intergenic
ATGGTTAAATTACCTCAAGT+GGG 0.636541 7.2:+16629807 None:intergenic
AGACTCCTGGAAGAGACAAG+TGG 0.644950 7.2:-16628545 MS.gene072355:CDS
TTGTCCAGCTATGAAGATTG+GGG 0.646097 7.2:-16628589 MS.gene072355:intron
GCATGTGCAGGAAGGTGCAG+AGG 0.686778 7.2:-16631411 MS.gene072355:CDS
CCATGAAGGAGCTACGAGAG+CGG 0.693186 7.2:-16628762 MS.gene072355:CDS
TGATTGATGCATGTGCAGGA+AGG 0.724085 7.2:-16631419 None:intergenic
TCCTGGAAGAGACAAGTGGG+TGG 0.726072 7.2:-16628541 MS.gene072355:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATAGGCTTATTTTTATATT+AGG - chr7.2:16630545-16630564 MS.gene072355:intron 15.0%
!!! ATGATTGTTTAAGATTTTAA+AGG + chr7.2:16630027-16630046 None:intergenic 15.0%
!! AAATTGAACTATGTTAACAT+GGG - chr7.2:16628972-16628991 MS.gene072355:intron 20.0%
!! AATAAGCAAAATCATACATA+GGG + chr7.2:16628749-16628768 None:intergenic 20.0%
!! ATTTATGTAACATGCAATAA+AGG + chr7.2:16629598-16629617 None:intergenic 20.0%
!! TAAATTGAACTATGTTAACA+TGG - chr7.2:16628971-16628990 MS.gene072355:intron 20.0%
!! TACTGTTTGTTTATTAAGTT+GGG - chr7.2:16631257-16631276 MS.gene072355:CDS 20.0%
!! TGAAAATTATAGCATAAACT+GGG - chr7.2:16630691-16630710 MS.gene072355:intron 20.0%
!! TTAAATCCTAAATTAACATG+TGG + chr7.2:16630859-16630878 None:intergenic 20.0%
!! TTAACATATACTTGTGTAAT+AGG - chr7.2:16629002-16629021 MS.gene072355:intron 20.0%
!! TTAGGATTTAAATATTCTCA+TGG - chr7.2:16630868-16630887 MS.gene072355:intron 20.0%
!! TTGAAAATTATAGCATAAAC+TGG - chr7.2:16630690-16630709 MS.gene072355:intron 20.0%
!! TTTAAAAAAAGTTTCATCGA+TGG + chr7.2:16630757-16630776 None:intergenic 20.0%
!! TTTCTATATTTCAATTGAGT+GGG + chr7.2:16630276-16630295 None:intergenic 20.0%
!!! TTTTCTATATTTCAATTGAG+TGG + chr7.2:16630277-16630296 None:intergenic 20.0%
! AAACAACTTATCAATAGAGT+AGG - chr7.2:16629681-16629700 MS.gene072355:intron 25.0%
! AAGTTGTCAAACAAAATTTG+AGG - chr7.2:16629299-16629318 MS.gene072355:intron 25.0%
! ACATACATGTATAGTAACAA+GGG - chr7.2:16630455-16630474 MS.gene072355:intron 25.0%
! ACTCTATTGATAAGTTGTTT+GGG + chr7.2:16629681-16629700 None:intergenic 25.0%
! AGATCAATAAAGTAGAAGTA+AGG + chr7.2:16630318-16630337 None:intergenic 25.0%
! ATTAGTATTTGTGTTAGCTA+TGG - chr7.2:16628770-16628789 MS.gene072355:intron 25.0%
! CTAACAAAAAGTTCTTTCAA+CGG + chr7.2:16630004-16630023 None:intergenic 25.0%
! CTACTGTTTGTTTATTAAGT+TGG - chr7.2:16631256-16631275 MS.gene072355:CDS 25.0%
! GAATAAGCAAAATCATACAT+AGG + chr7.2:16628750-16628769 None:intergenic 25.0%
! TACTCTATTGATAAGTTGTT+TGG + chr7.2:16629682-16629701 None:intergenic 25.0%
! TGATAATTAAGTTCTTGTTG+AGG - chr7.2:16629192-16629211 MS.gene072355:intron 25.0%
! TTCTATATTTCAATTGAGTG+GGG + chr7.2:16630275-16630294 None:intergenic 25.0%
!! AACTTTTATGTTGGAGAATA+TGG + chr7.2:16629218-16629237 None:intergenic 25.0%
!! ACATAAATTGACAAGCTTTT+TGG - chr7.2:16629610-16629629 MS.gene072355:intron 25.0%
!! TGCTATAATTTTCAAAGTTC+AGG + chr7.2:16630685-16630704 None:intergenic 25.0%
!! TGTATGTTCTAAATAGAGTA+AGG + chr7.2:16628944-16628963 None:intergenic 25.0%
!! TTGCAACTTTTATTGAAGTA+TGG + chr7.2:16629733-16629752 None:intergenic 25.0%
!!! AAAAATAAGCCTATTTCTGA+TGG + chr7.2:16630540-16630559 None:intergenic 25.0%
!!! ATCAATGGGTTATGTAAAAT+GGG - chr7.2:16628800-16628819 MS.gene072355:intron 25.0%
!!! GTTTTATTTTTAGAGTCCTT+TGG - chr7.2:16630907-16630926 MS.gene072355:intron 25.0%
!!! TCCATATTTTTTTGTTGTGT+TGG - chr7.2:16631070-16631089 MS.gene072355:intron 25.0%
AATGGTTAAATTACCTCAAG+TGG + chr7.2:16630144-16630163 None:intergenic 30.0%
ACAAGAAAGACAACAAGTTA+TGG + chr7.2:16630067-16630086 None:intergenic 30.0%
ACATGTATGTCAGCATATAT+TGG + chr7.2:16630445-16630464 None:intergenic 30.0%
ACTGATACAAAATGAAACCA+TGG + chr7.2:16631101-16631120 None:intergenic 30.0%
ATAACATGTAGCAATACCAA+AGG + chr7.2:16630926-16630945 None:intergenic 30.0%
ATACAAACAAGATCAACATC+TGG + chr7.2:16630385-16630404 None:intergenic 30.0%
ATCAATGGATGATGTAAAAC+AGG + chr7.2:16628853-16628872 None:intergenic 30.0%
ATCTGACCACATGTTAATTT+AGG - chr7.2:16630850-16630869 MS.gene072355:intron 30.0%
ATCTTAAACAATCATACTGC+AGG - chr7.2:16630032-16630051 MS.gene072355:intron 30.0%
ATGGTTAAATTACCTCAAGT+GGG + chr7.2:16630143-16630162 None:intergenic 30.0%
ATTGCAATATGAACCTTACA+AGG + chr7.2:16629656-16629675 None:intergenic 30.0%
CTCATACTTAGTCATATACT+TGG + chr7.2:16628667-16628686 None:intergenic 30.0%
CTCTATTGATAAGTTGTTTG+GGG + chr7.2:16629680-16629699 None:intergenic 30.0%
CTGAACAAATGAACTATAAC+AGG + chr7.2:16630582-16630601 None:intergenic 30.0%
GACATACATGTATAGTAACA+AGG - chr7.2:16630454-16630473 MS.gene072355:intron 30.0%
GATCAAATTCCATCAGAAAT+AGG - chr7.2:16630528-16630547 MS.gene072355:intron 30.0%
GCCAACACAACAAAAAAATA+TGG + chr7.2:16631074-16631093 None:intergenic 30.0%
TAAGAAATCTACATACGTGT+CGG - chr7.2:16629154-16629173 MS.gene072355:intron 30.0%
TGATCTCGTCTTCAAAATAT+AGG + chr7.2:16630513-16630532 None:intergenic 30.0%
TTTACATCATCCATTGATCA+AGG - chr7.2:16628855-16628874 MS.gene072355:intron 30.0%
! AGCTTTTTGGACAACAAAAT+AGG - chr7.2:16629623-16629642 MS.gene072355:intron 30.0%
! CTTTCTCCCTTTAAAGAAAA+AGG - chr7.2:16630658-16630677 MS.gene072355:intron 30.0%
! TATGCTTAGATCATTGACTA+TGG - chr7.2:16630402-16630421 MS.gene072355:intron 30.0%
! TCAGGACCTTTTTCTTTAAA+GGG + chr7.2:16630667-16630686 None:intergenic 30.0%
! TTATGTCGTACTTACCATTT+TGG - chr7.2:16631332-16631351 MS.gene072355:CDS 30.0%
! TTCAGGACCTTTTTCTTTAA+AGG + chr7.2:16630668-16630687 None:intergenic 30.0%
! TTTTATTGAAGTATGGTGCT+TGG + chr7.2:16629726-16629745 None:intergenic 30.0%
!! GATCAATGGGTTATGTAAAA+TGG - chr7.2:16628799-16628818 MS.gene072355:intron 30.0%
AAAGTACAAGCTATGGACAA+TGG + chr7.2:16630625-16630644 None:intergenic 35.0%
AAGTACGACATAAAAGATGG+AGG + chr7.2:16631325-16631344 None:intergenic 35.0%
AATTGTCCAGCTATGAAGAT+TGG - chr7.2:16631356-16631375 MS.gene072355:CDS 35.0%
ACCAATTGAAACTGAGGAAA+AGG - chr7.2:16628605-16628624 MS.gene072355:intron 35.0%
AGCTATGGAATCTTGATCAA+TGG - chr7.2:16628785-16628804 MS.gene072355:intron 35.0%
AGCTGTAAAAACGAATACTC+AGG + chr7.2:16629565-16629584 None:intergenic 35.0%
AGGGGAGAATTTAAACCAAA+CGG + chr7.2:16629917-16629936 None:intergenic 35.0%
AGTAGTATTTACCTTCCATC+AGG + chr7.2:16631241-16631260 None:intergenic 35.0%
ATAGAGTAAGGATGAGAAAG+AGG + chr7.2:16628932-16628951 None:intergenic 35.0%
ATATACTTGGAAGTCCTTCT+GGG + chr7.2:16628654-16628673 None:intergenic 35.0%
ATGTGCAATTGTGCATTACA+TGG + chr7.2:16630359-16630378 None:intergenic 35.0%
ATTGTCCAGCTATGAAGATT+GGG - chr7.2:16631357-16631376 MS.gene072355:CDS 35.0%
CAAAAATCCAGAATAGATGC+TGG - chr7.2:16629474-16629493 MS.gene072355:intron 35.0%
CAGTACTGTAACAAGAAAGA+AGG + chr7.2:16630188-16630207 None:intergenic 35.0%
CATGGTACACTACTTAATGA+AGG + chr7.2:16630341-16630360 None:intergenic 35.0%
CATTGATCAAGGTAACCAAA+AGG - chr7.2:16628866-16628885 MS.gene072355:intron 35.0%
CATTTGTTCAGCTTGTAGAT+TGG - chr7.2:16630591-16630610 MS.gene072355:intron 35.0%
GCATAGTAGTGTATTGTACT+GGG + chr7.2:16629841-16629860 None:intergenic 35.0%
GCTATGGAATCTTGATCAAT+GGG - chr7.2:16628786-16628805 MS.gene072355:intron 35.0%
GGTAAGTACGACATAAAAGA+TGG + chr7.2:16631328-16631347 None:intergenic 35.0%
TGAATCGCAAAGAGATCAAA+TGG + chr7.2:16630162-16630181 None:intergenic 35.0%
TGATGTAAAACAGGACAAAC+TGG + chr7.2:16628844-16628863 None:intergenic 35.0%
TGCATAGTAGTGTATTGTAC+TGG + chr7.2:16629842-16629861 None:intergenic 35.0%
TTTCAAGAAGCTTGACAGTT+AGG + chr7.2:16629775-16629794 None:intergenic 35.0%
! AGGTCATCATTCTTGTTATC+AGG + chr7.2:16628570-16628589 None:intergenic 35.0%
! AGTTGGGTACTTCTTTTTCT+TGG - chr7.2:16631273-16631292 MS.gene072355:CDS 35.0%
! CTTTTGTCAAAAAGTTGCCT+TGG + chr7.2:16629968-16629987 None:intergenic 35.0%
! GGAGTTGACAACTTTTATGT+TGG + chr7.2:16629227-16629246 None:intergenic 35.0%
! GGTACTTCTTTTTCTTGGAT+GGG - chr7.2:16631278-16631297 MS.gene072355:CDS 35.0%
! TCCTTTTCCTCAGTTTCAAT+TGG + chr7.2:16628609-16628628 None:intergenic 35.0%
!! AAAATTTGAGGAGTGCTGAA+AGG - chr7.2:16629311-16629330 MS.gene072355:intron 35.0%
!! CTTTTGGTTACCTTGATCAA+TGG + chr7.2:16628868-16628887 None:intergenic 35.0%
AACTCTTCAGATTGCCATGA+AGG - chr7.2:16631171-16631190 MS.gene072355:intron 40.0%
AATGATGACCTAGATGCAGA+AGG - chr7.2:16628579-16628598 MS.gene072355:CDS 40.0%
ACAATGACTAAATGCCCGTT+TGG - chr7.2:16629899-16629918 MS.gene072355:intron 40.0%
ACACAGAAGCTGAAATCCTA+TGG + chr7.2:16629366-16629385 None:intergenic 40.0%
ACTCCAGTGGTTTCTAATCT+AGG + chr7.2:16629399-16629418 None:intergenic 40.0%
AGACATCCAACGAAAATTCG+TGG + chr7.2:16629058-16629077 None:intergenic 40.0%
AGGAGAACCAATTGAAACTG+AGG - chr7.2:16628599-16628618 MS.gene072355:intron 40.0%
CATATACTTGGAAGTCCTTC+TGG + chr7.2:16628655-16628674 None:intergenic 40.0%
CGAATACTCAGGTATCTTAG+AGG + chr7.2:16629554-16629573 None:intergenic 40.0%
GAGGATTGCATTATGAGACA+AGG - chr7.2:16629267-16629286 MS.gene072355:intron 40.0%
GCTTGACAGTTAGGTTAAGT+TGG + chr7.2:16629766-16629785 None:intergenic 40.0%
GGGGAGAATTTAAACCAAAC+GGG + chr7.2:16629916-16629935 None:intergenic 40.0%
GTAAAACAGGACAAACTGGA+AGG + chr7.2:16628840-16628859 None:intergenic 40.0%
TACAAGCTATGGACAATGGT+TGG + chr7.2:16630621-16630640 None:intergenic 40.0%
TAGCTGGACAATTGCCAAAA+TGG + chr7.2:16631349-16631368 None:intergenic 40.0%
TGAACATAGATCACAGCCAT+AGG - chr7.2:16629347-16629366 MS.gene072355:intron 40.0%
TGGACAACAAAATAGGTTGC+AGG - chr7.2:16629630-16629649 MS.gene072355:intron 40.0%
TTCATGGCAATCTGAAGAGT+TGG + chr7.2:16631172-16631191 None:intergenic 40.0%
TTGTCCAGCTATGAAGATTG+GGG - chr7.2:16631358-16631377 MS.gene072355:CDS 40.0%
! AACCACTGGAGTTTTCTTCA+TGG - chr7.2:16629407-16629426 MS.gene072355:intron 40.0%
! ACTTCTTTTTCTTGGATGGG+AGG - chr7.2:16631281-16631300 MS.gene072355:CDS 40.0%
! AGCCAAGAAAGTACAAGCTA+TGG + chr7.2:16630632-16630651 None:intergenic 40.0%
! CTTCTTTTTCTTGGATGGGA+GGG - chr7.2:16631282-16631301 MS.gene072355:CDS 40.0%
! GGATTTTTGTGATGCAGACT+AGG + chr7.2:16629463-16629482 None:intergenic 40.0%
! GGGTACTTCTTTTTCTTGGA+TGG - chr7.2:16631277-16631296 MS.gene072355:CDS 40.0%
! GTCCATAGCTTGTACTTTCT+TGG - chr7.2:16630627-16630646 MS.gene072355:intron 40.0%
! TAAACCTGATTTGAAGAGCG+CGG + chr7.2:16628710-16628729 None:intergenic 40.0%
! TAGCTTGTACTTTCTTGGCT+CGG - chr7.2:16630632-16630651 MS.gene072355:intron 40.0%
! TTTCCTCCACGAATTTTCGT+TGG - chr7.2:16629049-16629068 MS.gene072355:intron 40.0%
AACTCCCCAATCTTCATAGC+TGG + chr7.2:16631365-16631384 None:intergenic 45.0%
AAGTAGCGACGGATGGTAAA+AGG + chr7.2:16631217-16631236 None:intergenic 45.0%
ACCATCCTGAGTTTGTCTCT+AGG - chr7.2:16629094-16629113 MS.gene072355:intron 45.0%
ACCTAGAGACAAACTCAGGA+TGG + chr7.2:16629098-16629117 None:intergenic 45.0%
AGCTTGTACTTTCTTGGCTC+GGG - chr7.2:16630633-16630652 MS.gene072355:intron 45.0%
AGTAAGGATGAGAAAGAGGC+TGG + chr7.2:16628928-16628947 None:intergenic 45.0%
AGTTGTCAACTCCACTTGCA+TGG - chr7.2:16629234-16629253 MS.gene072355:intron 45.0%
ATGGGGGAAAACACTTACCA+AGG - chr7.2:16629948-16629967 MS.gene072355:intron 45.0%
CACAACCTAGAGACAAACTC+AGG + chr7.2:16629102-16629121 None:intergenic 45.0%
CAGTATGAATGCACCTGTCA+TGG - chr7.2:16630095-16630114 MS.gene072355:intron 45.0%
CATCCAACGAAAATTCGTGG+AGG + chr7.2:16629055-16629074 None:intergenic 45.0%
CATGGTTCACTCCTACAGAA+CGG + chr7.2:16629514-16629533 None:intergenic 45.0%
CCACAAAAGAACCATGCAAG+TGG + chr7.2:16629248-16629267 None:intergenic 45.0%
CTGCCTAGATTAGAAACCAC+TGG - chr7.2:16629393-16629412 MS.gene072355:intron 45.0%
GACAGAACCAGCATCTATTC+TGG + chr7.2:16629484-16629503 None:intergenic 45.0%
GTCCATGAAGAAAACTCCAG+TGG + chr7.2:16629412-16629431 None:intergenic 45.0%
TATGAGCGTGCTAGGATTCT+CGG - chr7.2:16628681-16628700 MS.gene072355:intron 45.0%
TCTCTAGGTTGTGAAACGCA+GGG - chr7.2:16629109-16629128 MS.gene072355:intron 45.0%
TGACTAAGTATGAGCGTGCT+AGG - chr7.2:16628673-16628692 MS.gene072355:intron 45.0%
TTTCTTGGATGGGAGGGTTA+AGG - chr7.2:16631288-16631307 MS.gene072355:CDS 45.0%
! AAACCTGATTTGAAGAGCGC+GGG + chr7.2:16628709-16628728 None:intergenic 45.0%
! AATAGGTTGCAGGCCTTGTA+AGG - chr7.2:16629640-16629659 MS.gene072355:intron 45.0%
! CATTGCTCTTGCTTGCCTTT+TGG + chr7.2:16628884-16628903 None:intergenic 45.0%
! CCACTTGCATGGTTCTTTTG+TGG - chr7.2:16629245-16629264 MS.gene072355:intron 45.0%
! CTTGCATGGTTCTTTTGTGG+AGG - chr7.2:16629248-16629267 MS.gene072355:intron 45.0%
! TGTCAGGTTTTCCGTTCTGT+AGG - chr7.2:16629500-16629519 MS.gene072355:intron 45.0%
! TTGGTTCTCCTTCTGCATCT+AGG + chr7.2:16628590-16628609 None:intergenic 45.0%
!! CTTAGAGGCACTATCACTCA+AGG + chr7.2:16629539-16629558 None:intergenic 45.0%
!! GAATAGATGCTGGTTCTGTC+AGG - chr7.2:16629484-16629503 MS.gene072355:intron 45.0%
!! TCTACATACGTGTCGGTTGT+TGG - chr7.2:16629161-16629180 MS.gene072355:intron 45.0%
AGACTCCTGGAAGAGACAAG+TGG - chr7.2:16631402-16631421 MS.gene072355:CDS 50.0%
AGCTGATTGTGGAAGACTCC+TGG - chr7.2:16631389-16631408 MS.gene072355:CDS 50.0%
CGTTCTGTAGGAGTGAACCA+TGG - chr7.2:16629512-16629531 MS.gene072355:intron 50.0%
CTCTAGGTTGTGAAACGCAG+GGG - chr7.2:16629110-16629129 MS.gene072355:intron 50.0%
GACTCCTGGAAGAGACAAGT+GGG - chr7.2:16631403-16631422 MS.gene072355:CDS 50.0%
GCACTATCACTCAAGGACCA+TGG + chr7.2:16629532-16629551 None:intergenic 50.0%
GGAAAAGGAAGATGCTGCTC+CGG - chr7.2:16628620-16628639 MS.gene072355:intron 50.0%
GTCTCTAGGTTGTGAAACGC+AGG - chr7.2:16629108-16629127 MS.gene072355:intron 50.0%
TCCCCCATAGTAGTCAGTGA+GGG + chr7.2:16629936-16629955 None:intergenic 50.0%
TGCACCTGTCATGGTTGAGT+TGG - chr7.2:16630104-16630123 MS.gene072355:intron 50.0%
TGTGTATCCCTAACCACCGA+TGG - chr7.2:16628902-16628921 MS.gene072355:intron 50.0%
TTCCATCAGGCAAGTAGCGA+CGG + chr7.2:16631228-16631247 None:intergenic 50.0%
TTCCCCCATAGTAGTCAGTG+AGG + chr7.2:16629937-16629956 None:intergenic 50.0%
! ATGAGAAAGAGGCTGGCCAT+CGG + chr7.2:16628921-16628940 None:intergenic 50.0%
! CTCCCCTCACTGACTACTAT+GGG - chr7.2:16629930-16629949 MS.gene072355:intron 50.0%
! TCCCCTCACTGACTACTATG+GGG - chr7.2:16629931-16629950 MS.gene072355:intron 50.0%
! TCTCCCCTCACTGACTACTA+TGG - chr7.2:16629929-16629948 MS.gene072355:intron 50.0%
!! ACCTGTCATGGTTGAGTTGG+AGG - chr7.2:16630107-16630126 MS.gene072355:intron 50.0%
!! CCTGTCATGGTTGAGTTGGA+GGG - chr7.2:16630108-16630127 MS.gene072355:intron 50.0%
!! CTGTCATGGTTGAGTTGGAG+GGG - chr7.2:16630109-16630128 MS.gene072355:intron 50.0%
!! GCTTGGTGCAATCTCTAAGC+AGG + chr7.2:16629709-16629728 None:intergenic 50.0%
!! GGGAGTTGATGAGCTGATTG+TGG - chr7.2:16631378-16631397 MS.gene072355:CDS 50.0%
!! TGTCATGGTTGAGTTGGAGG+GGG - chr7.2:16630110-16630129 MS.gene072355:intron 50.0%
!! TTGTTGTGTTGGCTCTGCCA+TGG - chr7.2:16631081-16631100 MS.gene072355:intron 50.0%
ACCACCCACTTGTCTCTTCC+AGG + chr7.2:16631410-16631429 None:intergenic 55.0%
ATCAGGCAAGTAGCGACGGA+TGG + chr7.2:16631224-16631243 None:intergenic 55.0%
ATCCGTCGCTACTTGCCTGA+TGG - chr7.2:16631223-16631242 MS.gene072355:intron 55.0%
CCATGAAGGAGCTACGAGAG+CGG - chr7.2:16631185-16631204 MS.gene072355:intron 55.0%
CCCCCATAGTAGTCAGTGAG+GGG + chr7.2:16629935-16629954 None:intergenic 55.0%
CCCTCCAACTCAACCATGAC+AGG + chr7.2:16630111-16630130 None:intergenic 55.0%
GTACCCGCGCTCTTCAAATC+AGG - chr7.2:16628703-16628722 MS.gene072355:intron 55.0%
GTCGCTACTTGCCTGATGGA+AGG - chr7.2:16631227-16631246 MS.gene072355:intron 55.0%
TCCTGGAAGAGACAAGTGGG+TGG - chr7.2:16631406-16631425 MS.gene072355:CDS 55.0%
! CCCCTCACTGACTACTATGG+GGG - chr7.2:16629932-16629951 MS.gene072355:intron 55.0%
!! GTCCTTCTGGGACGTTCAAC+CGG + chr7.2:16628642-16628661 None:intergenic 55.0%
CCGCTCTCGTAGCTCCTTCA+TGG + chr7.2:16631188-16631207 None:intergenic 60.0%
CTCCGGTTGAACGTCCCAGA+AGG - chr7.2:16628637-16628656 MS.gene072355:intron 60.0%
GGGGGAAACTGACCCACTTG+AGG - chr7.2:16630128-16630147 MS.gene072355:intron 60.0%
! AGAAAGAGGCTGGCCATCGG+TGG + chr7.2:16628918-16628937 None:intergenic 60.0%
! AGGCTGGCCATCGGTGGTTA+GGG + chr7.2:16628912-16628931 None:intergenic 60.0%
! GCATGTGCAGGAAGGTGCAG+AGG - chr7.2:16628536-16628555 MS.gene072355:CDS 60.0%
! TGTGCAGGAAGGTGCAGAGG+AGG - chr7.2:16628539-16628558 MS.gene072355:CDS 60.0%
! GAGGCTGGCCATCGGTGGTT+AGG + chr7.2:16628913-16628932 None:intergenic 65.0%
! GCAGGAAGGTGCAGAGGAGG+AGG - chr7.2:16628542-16628561 MS.gene072355:CDS 65.0%


Chromosome Type Strat End Strand Name
chr7.2 gene 16628534 16631435 16628534 ID=MS.gene072355
chr7.2 mRNA 16628534 16631435 16628534 ID=MS.gene072355.t1;Parent=MS.gene072355
chr7.2 exon 16631245 16631435 16631245 ID=MS.gene072355.t1.exon1;Parent=MS.gene072355.t1
chr7.2 CDS 16631245 16631435 16631245 ID=cds.MS.gene072355.t1;Parent=MS.gene072355.t1
chr7.2 exon 16629820 16629871 16629820 ID=MS.gene072355.t1.exon2;Parent=MS.gene072355.t1
chr7.2 CDS 16629820 16629871 16629820 ID=cds.MS.gene072355.t1;Parent=MS.gene072355.t1
chr7.2 exon 16628721 16628788 16628721 ID=MS.gene072355.t1.exon3;Parent=MS.gene072355.t1
chr7.2 CDS 16628721 16628788 16628721 ID=cds.MS.gene072355.t1;Parent=MS.gene072355.t1
chr7.2 exon 16628534 16628603 16628534 ID=MS.gene072355.t1.exon4;Parent=MS.gene072355.t1
chr7.2 CDS 16628534 16628603 16628534 ID=cds.MS.gene072355.t1;Parent=MS.gene072355.t1
Gene Sequence

>MS.gene072355

ATGCATGTGCAGGAAGGTGCAGAGGAGGAGGATCCTGATAACAAGAATGATGACCTAGATGCAGAAGGAGAACCAATTGAAACTGAGGAAAAGGAAGATGCTGCTCCGGTTGAACGTCCCAGAAGGACTTCCAAGTATATGACTAAGTATGAGCGTGCTAGGATTCTCGGTACCCGCGCTCTTCAAATCAGGTTTACAGCTTAATTTCATCACCCTATGTATGATTTTGCTTATTCATTAGTATTTGTGTTAGCTATGGAATCTTGATCAATGGGTTATGTAAAATGGGACAAGCACGAGCTTCCTTCCAGTTTGTCCTGTTTTACATCATCCATTGATCAAGGTAACCAAAAGGCAAGCAAGAGCAATGTGTATCCCTAACCACCGATGGCCAGCCTCTTTCTCATCCTTACTCTATTTAGAACATACAATTAAATTAAATTGAACTATGTTAACATGGGTCTGCGCTTAACATATACTTGTGTAATAGGAACTCTACTAACAGTATTCTTGTATTTCCTCCACGAATTTTCGTTGGATGTCTAAGAACAAATTTGTCAACCATCCTGAGTTTGTCTCTAGGTTGTGAAACGCAGGGGAGAGAGAGAGAGACAATTTGTTAAGAAATCTACATACGTGTCGGTTGTTGGAATATGACTGATAATTAAGTTCTTGTTGAGGCCATATTCTCCAACATAAAAGTTGTCAACTCCACTTGCATGGTTCTTTTGTGGAGGATTGCATTATGAGACAAGGATACTGCTCAAGTTGTCAAACAAAATTTGAGGAGTGCTGAAAGGAATCTGAAGTTCGTGAACATAGATCACAGCCATAGGATTTCAGCTTCTGTGTTCTGCTTCTGCCTAGATTAGAAACCACTGGAGTTTTCTTCATGGACATAGACTTACTGACATCTGAGTCAGATGCCTAGTCTGCATCACAAAAATCCAGAATAGATGCTGGTTCTGTCAGGTTTTCCGTTCTGTAGGAGTGAACCATGGTCCTTGAGTGATAGTGCCTCTAAGATACCTGAGTATTCGTTTTTACAGCTTTCTAATGCTCCTTTATTGCATGTTACATAAATTGACAAGCTTTTTGGACAACAAAATAGGTTGCAGGCCTTGTAAGGTTCATATTGCAATGCCCCAAACAACTTATCAATAGAGTAGGATCCTGCTTAGAGATTGCACCAAGCACCATACTTCAATAAAAGTTGCAATAACTAACTGCCAACTTAACCTAACTGTCAAGCTTCTTGAAAGAGAACTAATTCTCTGCACAGTGAGCTTACAAAGAATGCAAAACCCAGTACAATACACTACTATGCAATATGCATATTAAAAACAACAATGACTAAATGAAACAACAATGACTAAATGCCCGTTTGGTTTAAATTCTCCCCTCACTGACTACTATGGGGGAAAACACTTACCAAGGCAACTTTTTGACAAAAGTTACTTTTTTCTTCCGTTGAAAGAACTTTTTGTTAGCCTTTAAAATCTTAAACAATCATACTGCAGGTCTAATATGCCATAACTTGTTGTCTTTCTTGTTGTATGTGCAGTATGAATGCACCTGTCATGGTTGAGTTGGAGGGGGAAACTGACCCACTTGAGGTAATTTAACCATTTGATCTCTTTGCGATTCAATACCTTCTTTCTTGTTACAGTACTGCATTTGACTACTAATTGTGAGAATATCGTTGTCAAATTTTCAAACATATGTCAGTTGCGCTATGCCCCACTCAATTGAAATATAGAAAATGATTCATTACGAAGCTTCCTTACTTCTACTTTATTGATCTCCTTCATTAAGTAGTGTACCATGTAATGCACAATTGCACATACTCCAGATGTTGATCTTGTTTGTATGCTTAGATCATTGACTATGGTCAACTATACAGTTGTACCAATATATGCTGACATACATGTATAGTAACAAGGGTTTCATCTTCTCATATATTCATTTTCAATTAACCTATATTTTGAAGACGAGATCAAATTCCATCAGAAATAGGCTTATTTTTATATTAGGTTTAATAAATTCCTGTTATAGTTCATTTGTTCAGCTTGTAGATTGGTTTTCCAACCATTGTCCATAGCTTGTACTTTCTTGGCTCGGGATCTTTCTCCCTTTAAAGAAAAAGGTCCTGAACTTTGAAAATTATAGCATAAACTGGGTTGTTCTTCAGTTTGACAGTCGCATGATTTTTTCAATGTTCCATCGATGAAACTTTTTTTAAAAAATTATATAAGACTGTCATCATGACTTCGCTGAACTGATATCTTTGATGAAATTCTTGTCTTCTAATGTTGAATCTGACCACATGTTAATTTAGGATTTAAATATTCTCATGGTTGAGTAGTGTATCTTGTTTTATTTTTAGAGTCCTTTGGTATTGCTACATGTTATCTGATTCTCAAGCTCTTTAAATTTGTAAAGAATACATTGTGCACTCTATACTACGAATTACATGATTAAAATTTGACGATTTCTTATAGTAGTTTAGACGTTGTCTGTGTTCGATTCAGCAATATCCATATTTTTTTGTTGTGTTGGCTCTGCCATGGTTTCATTTTGTATCAGTTGCAATGCTATGCATTTTTTTTAGTGTAATGTCTGATATTTTATTTTTCCAACTCTTCAGATTGCCATGAAGGAGCTACGAGAGCGGAAAATTCCTTTTACCATCCGTCGCTACTTGCCTGATGGAAGGTAAATACTACTGTTTGTTTATTAAGTTGGGTACTTCTTTTTCTTGGATGGGAGGGTTAAGGCTGATACAATTCCTCCATCTTTTATGTCGTACTTACCATTTTGGCAATTGTCCAGCTATGAAGATTGGGGAGTTGATGAGCTGATTGTGGAAGACTCCTGGAAGAGACAAGTGGGTGGTGATTGA
Protein sequence

>MS.gene072355.t1

MHVQEGAEEEDPDNKNDDLDAEGEPIETEEKEDAAPVERPRRTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGGD