Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051241.t1 | XP_003623155.2 | 98 | 98 | 2 | 0 | 1 | 98 | 2 | 99 | 1.80E-46 | 194.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051241.t1 | Q9SI54 | 92.7 | 96 | 7 | 0 | 1 | 96 | 2 | 97 | 6.3e-45 | 181.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051241.t1 | G7L5K6 | 98.0 | 98 | 2 | 0 | 1 | 98 | 2 | 99 | 1.3e-46 | 194.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049255 | MS.gene051241 | 0.836291 | 1.02E-56 | -1.69E-46 |
| MS.gene050277 | MS.gene051241 | 0.806583 | 7.67E-50 | -1.69E-46 |
| MS.gene050437 | MS.gene051241 | 0.814648 | 1.38E-51 | -1.69E-46 |
| MS.gene050752 | MS.gene051241 | 0.80561 | 1.23E-49 | -1.69E-46 |
| MS.gene050955 | MS.gene051241 | 0.827885 | 1.22E-54 | -1.69E-46 |
| MS.gene051241 | MS.gene051243 | 0.861964 | 7.09E-64 | -1.69E-46 |
| MS.gene051241 | MS.gene05134 | 0.839094 | 1.95E-57 | -1.69E-46 |
| MS.gene051241 | MS.gene054403 | 0.805675 | 1.19E-49 | -1.69E-46 |
| MS.gene051241 | MS.gene055162 | 0.852215 | 5.34E-61 | -1.69E-46 |
| MS.gene051241 | MS.gene055555 | 0.802272 | 6.07E-49 | -1.69E-46 |
| MS.gene051241 | MS.gene056631 | 0.814 | 1.93E-51 | -1.69E-46 |
| MS.gene051241 | MS.gene057234 | 0.811741 | 6.02E-51 | -1.69E-46 |
| MS.gene051241 | MS.gene057392 | 0.811948 | 5.42E-51 | -1.69E-46 |
| MS.gene051241 | MS.gene057694 | 0.806578 | 7.68E-50 | -1.69E-46 |
| MS.gene051241 | MS.gene057705 | 0.862893 | 3.67E-64 | -1.69E-46 |
| MS.gene051241 | MS.gene058088 | 0.801509 | 8.71E-49 | -1.69E-46 |
| MS.gene051241 | MS.gene058238 | 0.800112 | 1.68E-48 | -1.69E-46 |
| MS.gene051241 | MS.gene059898 | 0.800509 | 1.39E-48 | -1.69E-46 |
| MS.gene051241 | MS.gene060429 | 0.824206 | 9.15E-54 | -1.69E-46 |
| MS.gene051241 | MS.gene060917 | 0.815802 | 7.67E-52 | -1.69E-46 |
| MS.gene051241 | MS.gene063026 | 0.801466 | 8.89E-49 | -1.69E-46 |
| MS.gene051241 | MS.gene063119 | 0.800415 | 1.46E-48 | -1.69E-46 |
| MS.gene051241 | MS.gene06371 | 0.836678 | 8.13E-57 | -1.69E-46 |
| MS.gene051241 | MS.gene063787 | 0.833891 | 4.11E-56 | -1.69E-46 |
| MS.gene051241 | MS.gene064071 | 0.836712 | 7.97E-57 | -1.69E-46 |
| MS.gene051241 | MS.gene064072 | 0.838271 | 3.18E-57 | -1.69E-46 |
| MS.gene051241 | MS.gene064937 | 0.802309 | 5.96E-49 | -1.69E-46 |
| MS.gene051241 | MS.gene06667 | 0.820797 | 5.67E-53 | -1.69E-46 |
| MS.gene051241 | MS.gene06797 | 0.805413 | 1.35E-49 | -1.69E-46 |
| MS.gene051241 | MS.gene068637 | 0.804724 | 1.88E-49 | -1.69E-46 |
| MS.gene051241 | MS.gene06883 | 0.801599 | 8.35E-49 | -1.69E-46 |
| MS.gene051241 | MS.gene069220 | 0.821816 | 3.30E-53 | -1.69E-46 |
| MS.gene051241 | MS.gene069310 | 0.804483 | 2.11E-49 | -1.69E-46 |
| MS.gene051241 | MS.gene06984 | 0.80327 | 3.78E-49 | -1.69E-46 |
| MS.gene051241 | MS.gene06989 | 0.828128 | 1.07E-54 | -1.69E-46 |
| MS.gene051241 | MS.gene07090 | 0.800929 | 1.14E-48 | -1.69E-46 |
| MS.gene051241 | MS.gene07100 | 0.853084 | 3.02E-61 | -1.69E-46 |
| MS.gene051241 | MS.gene071960 | 0.835282 | 1.84E-56 | -1.69E-46 |
| MS.gene051241 | MS.gene07217 | 0.829858 | 4.07E-55 | -1.69E-46 |
| MS.gene051241 | MS.gene07222 | 0.805867 | 1.09E-49 | -1.69E-46 |
| MS.gene051241 | MS.gene072355 | 0.848902 | 4.56E-60 | -1.69E-46 |
| MS.gene051241 | MS.gene072357 | 0.849116 | 3.97E-60 | -1.69E-46 |
| MS.gene051241 | MS.gene072555 | 0.809596 | 1.75E-50 | -1.69E-46 |
| MS.gene051241 | MS.gene073003 | 0.812825 | 3.49E-51 | -1.69E-46 |
| MS.gene051241 | MS.gene073674 | 0.817888 | 2.61E-52 | -1.69E-46 |
| MS.gene051241 | MS.gene073954 | 0.830286 | 3.20E-55 | -1.69E-46 |
| MS.gene051241 | MS.gene074603 | 0.804088 | 2.55E-49 | -1.69E-46 |
| MS.gene051241 | MS.gene074606 | 0.813896 | 2.03E-51 | -1.69E-46 |
| MS.gene051241 | MS.gene08428 | 0.801846 | 7.43E-49 | -1.69E-46 |
| MS.gene051241 | MS.gene20302 | 0.807389 | 5.18E-50 | -1.69E-46 |
| MS.gene051241 | MS.gene20740 | 0.807258 | 5.52E-50 | -1.69E-46 |
| MS.gene051241 | MS.gene21490 | 0.823187 | 1.59E-53 | -1.69E-46 |
| MS.gene051241 | MS.gene22968 | 0.832029 | 1.19E-55 | -1.69E-46 |
| MS.gene051241 | MS.gene22974 | 0.825115 | 5.59E-54 | -1.69E-46 |
| MS.gene051241 | MS.gene23058 | 0.834584 | 2.75E-56 | -1.69E-46 |
| MS.gene051241 | MS.gene23059 | 0.829492 | 4.99E-55 | -1.69E-46 |
| MS.gene051241 | MS.gene23567 | 0.845781 | 3.28E-59 | -1.69E-46 |
| MS.gene051241 | MS.gene23954 | 0.800328 | 1.52E-48 | -1.69E-46 |
| MS.gene051241 | MS.gene24610 | 0.817234 | 3.67E-52 | -1.69E-46 |
| MS.gene051241 | MS.gene24923 | 0.848509 | 5.86E-60 | -1.69E-46 |
| MS.gene051241 | MS.gene24933 | 0.809742 | 1.63E-50 | -1.69E-46 |
| MS.gene051241 | MS.gene27482 | 0.806639 | 7.46E-50 | -1.69E-46 |
| MS.gene051241 | MS.gene28944 | 0.822812 | 1.94E-53 | -1.69E-46 |
| MS.gene051241 | MS.gene35214 | 0.828483 | 8.77E-55 | -1.69E-46 |
| MS.gene051241 | MS.gene40595 | 0.820035 | 8.49E-53 | -1.69E-46 |
| MS.gene051241 | MS.gene40648 | 0.804819 | 1.80E-49 | -1.69E-46 |
| MS.gene051241 | MS.gene40919 | 0.820531 | 6.53E-53 | -1.69E-46 |
| MS.gene051241 | MS.gene41455 | 0.804683 | 1.92E-49 | -1.69E-46 |
| MS.gene051241 | MS.gene43491 | 0.82773 | 1.33E-54 | -1.69E-46 |
| MS.gene051241 | MS.gene43537 | 0.80979 | 1.59E-50 | -1.69E-46 |
| MS.gene051241 | MS.gene43992 | 0.819302 | 1.25E-52 | -1.69E-46 |
| MS.gene051241 | MS.gene50088 | 0.822491 | 2.30E-53 | -1.69E-46 |
| MS.gene051241 | MS.gene52075 | 0.813524 | 2.45E-51 | -1.69E-46 |
| MS.gene051241 | MS.gene54043 | 0.82531 | 5.02E-54 | -1.69E-46 |
| MS.gene051241 | MS.gene54282 | 0.852451 | 4.58E-61 | -1.69E-46 |
| MS.gene051241 | MS.gene54919 | 0.818939 | 1.51E-52 | -1.69E-46 |
| MS.gene051241 | MS.gene55853 | 0.81873 | 1.68E-52 | -1.69E-46 |
| MS.gene051241 | MS.gene55988 | 0.808151 | 3.57E-50 | -1.69E-46 |
| MS.gene051241 | MS.gene56451 | 0.827364 | 1.63E-54 | -1.69E-46 |
| MS.gene051241 | MS.gene56656 | 0.803504 | 3.38E-49 | -1.69E-46 |
| MS.gene051241 | MS.gene57210 | 0.804099 | 2.54E-49 | -1.69E-46 |
| MS.gene051241 | MS.gene60690 | 0.801545 | 8.56E-49 | -1.69E-46 |
| MS.gene051241 | MS.gene61543 | 0.812714 | 3.69E-51 | -1.69E-46 |
| MS.gene051241 | MS.gene61679 | 0.806434 | 8.24E-50 | -1.69E-46 |
| MS.gene051241 | MS.gene64071 | 0.800622 | 1.32E-48 | -1.69E-46 |
| MS.gene051241 | MS.gene64243 | 0.841289 | 5.20E-58 | -1.69E-46 |
| MS.gene051241 | MS.gene66280 | 0.80271 | 4.93E-49 | -1.69E-46 |
| MS.gene051241 | MS.gene67346 | 0.801628 | 8.23E-49 | -1.69E-46 |
| MS.gene051241 | MS.gene67884 | 0.817552 | 3.11E-52 | -1.69E-46 |
| MS.gene051241 | MS.gene68136 | 0.823671 | 1.22E-53 | -1.69E-46 |
| MS.gene051241 | MS.gene68215 | 0.80841 | 3.14E-50 | -1.69E-46 |
| MS.gene051241 | MS.gene68735 | 0.834732 | 2.53E-56 | -1.69E-46 |
| MS.gene051241 | MS.gene68810 | 0.828877 | 7.04E-55 | -1.69E-46 |
| MS.gene051241 | MS.gene69477 | 0.806698 | 7.25E-50 | -1.69E-46 |
| MS.gene051241 | MS.gene69947 | 0.808413 | 3.14E-50 | -1.69E-46 |
| MS.gene051241 | MS.gene70460 | 0.822456 | 2.35E-53 | -1.69E-46 |
| MS.gene051241 | MS.gene71215 | 0.834353 | 3.15E-56 | -1.69E-46 |
| MS.gene051241 | MS.gene71299 | 0.801444 | 8.98E-49 | -1.69E-46 |
| MS.gene051241 | MS.gene71949 | 0.848779 | 4.93E-60 | -1.69E-46 |
| MS.gene051241 | MS.gene72612 | 0.817948 | 2.53E-52 | -1.69E-46 |
| MS.gene051241 | MS.gene72904 | 0.802049 | 6.74E-49 | -1.69E-46 |
| MS.gene051241 | MS.gene73243 | 0.80392 | 2.77E-49 | -1.69E-46 |
| MS.gene051241 | MS.gene73364 | 0.83519 | 1.94E-56 | -1.69E-46 |
| MS.gene051241 | MS.gene75680 | 0.8202 | 7.78E-53 | -1.69E-46 |
| MS.gene051241 | MS.gene75923 | 0.803097 | 4.10E-49 | -1.69E-46 |
| MS.gene051241 | MS.gene79654 | 0.811702 | 6.13E-51 | -1.69E-46 |
| MS.gene051241 | MS.gene79792 | 0.843025 | 1.81E-58 | -1.69E-46 |
| MS.gene051241 | MS.gene82937 | 0.814649 | 1.38E-51 | -1.69E-46 |
| MS.gene051241 | MS.gene83961 | 0.803255 | 3.80E-49 | -1.69E-46 |
| MS.gene051241 | MS.gene84455 | 0.817094 | 3.94E-52 | -1.69E-46 |
| MS.gene051241 | MS.gene86265 | 0.82617 | 3.14E-54 | -1.69E-46 |
| MS.gene051241 | MS.gene87285 | 0.804308 | 2.30E-49 | -1.69E-46 |
| MS.gene051241 | MS.gene88229 | 0.805468 | 1.32E-49 | -1.69E-46 |
| MS.gene051241 | MS.gene88371 | 0.809137 | 2.19E-50 | -1.69E-46 |
| MS.gene051241 | MS.gene88808 | -0.82428 | 8.79E-54 | -1.69E-46 |
| MS.gene051241 | MS.gene89562 | 0.806184 | 9.30E-50 | -1.69E-46 |
| MS.gene051241 | MS.gene90981 | 0.860781 | 1.63E-63 | -1.69E-46 |
| MS.gene051241 | MS.gene91622 | 0.81035 | 1.20E-50 | -1.69E-46 |
| MS.gene051241 | MS.gene91722 | 0.803598 | 3.23E-49 | -1.69E-46 |
| MS.gene051241 | MS.gene92268 | 0.817696 | 2.88E-52 | -1.69E-46 |
| MS.gene051241 | MS.gene92367 | 0.817875 | 2.63E-52 | -1.69E-46 |
| MS.gene051241 | MS.gene94248 | 0.837157 | 6.13E-57 | -1.69E-46 |
| MS.gene051241 | MS.gene95039 | 0.833225 | 6.03E-56 | -1.69E-46 |
| MS.gene051241 | MS.gene95486 | 0.84785 | 8.91E-60 | -1.69E-46 |
| MS.gene051241 | MS.gene95625 | 0.809537 | 1.80E-50 | -1.69E-46 |
| MS.gene051241 | MS.gene97855 | -0.80451 | 2.09E-49 | -1.69E-46 |
| MS.gene051241 | MS.gene98141 | 0.810991 | 8.75E-51 | -1.69E-46 |
| MS.gene051241 | MS.gene99313 | 0.806577 | 7.69E-50 | -1.69E-46 |
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051241.t1 | MTR_7g065100 | 97.959 | 98 | 2 | 0 | 1 | 98 | 2 | 99 | 7.12e-65 | 191 |
| MS.gene051241.t1 | MTR_8g036205 | 96.471 | 85 | 3 | 0 | 1 | 85 | 2 | 86 | 2.76e-52 | 160 |
| MS.gene051241.t1 | MTR_7g104930 | 38.028 | 71 | 35 | 1 | 9 | 79 | 9 | 70 | 9.65e-13 | 58.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051241.t1 | AT2G03870 | 91.753 | 97 | 8 | 0 | 1 | 97 | 2 | 98 | 3.92e-60 | 179 |
| MS.gene051241.t1 | AT2G03870 | 91.753 | 97 | 8 | 0 | 1 | 97 | 2 | 98 | 3.92e-60 | 179 |
| MS.gene051241.t1 | AT2G23930 | 42.254 | 71 | 32 | 2 | 9 | 79 | 9 | 70 | 3.23e-13 | 59.7 |
| MS.gene051241.t1 | AT3G11500 | 39.437 | 71 | 34 | 1 | 9 | 79 | 9 | 70 | 2.04e-12 | 57.8 |
| MS.gene051241.t1 | AT3G11500 | 39.437 | 71 | 34 | 1 | 9 | 79 | 9 | 70 | 2.04e-12 | 57.8 |
Find 27 sgRNAs with CRISPR-Local
Find 186 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTAGTGACAGGTACTCTAAA+AGG | 0.295589 | 8.3:+59402958 | MS.gene051241:intron |
| TTAGCAAAATTTGTTGATAA+AGG | 0.301879 | 8.3:+59400920 | MS.gene051241:CDS |
| TTGTCGCAATGCAGGTTTGC+AGG | 0.321708 | 8.3:+59404780 | MS.gene051241:intron |
| TACAATTAAGCCAAGACTTC+TGG | 0.324979 | 8.3:-59404106 | None:intergenic |
| GGTGTTCAAGTCAAGCTTAC+TGG | 0.353916 | 8.3:+59400941 | MS.gene051241:CDS |
| TCTTGAGGCAGATGGGGCCT+AGG | 0.394260 | 8.3:+59404862 | MS.gene051241:CDS |
| CCAGGACAAGGTTAAGTAAC+TGG | 0.396790 | 8.3:-59402987 | None:intergenic |
| TGGGAGGAAAGAAACTGTTC+TGG | 0.428213 | 8.3:+59400895 | MS.gene051241:CDS |
| GCCCCATCTGCCTCAAGAAA+GGG | 0.437926 | 8.3:-59404857 | None:intergenic |
| GGCCCCATCTGCCTCAAGAA+AGG | 0.483618 | 8.3:-59404858 | None:intergenic |
| AACCCCTTTCTTGAGGCAGA+TGG | 0.486249 | 8.3:+59404854 | MS.gene051241:CDS |
| ACCCCTTTCTTGAGGCAGAT+GGG | 0.488188 | 8.3:+59404855 | MS.gene051241:CDS |
| CCCCTTTCTTGAGGCAGATG+GGG | 0.488254 | 8.3:+59404856 | MS.gene051241:CDS |
| CCAGTTACTTAACCTTGTCC+TGG | 0.506664 | 8.3:+59402987 | MS.gene051241:CDS |
| TGTCGCAATGCAGGTTTGCA+GGG | 0.521696 | 8.3:+59404781 | MS.gene051241:intron |
| TAGTGACAGGTACTCTAAAA+GGG | 0.532671 | 8.3:+59402959 | MS.gene051241:intron |
| ACAGATCAGACCAGAAGTCT+TGG | 0.544721 | 8.3:+59404096 | MS.gene051241:CDS |
| AAGCTTACTGGTGGCAGACA+AGG | 0.544738 | 8.3:+59400953 | MS.gene051241:CDS |
| AAAACTCAACAGCTTCATCC+AGG | 0.561824 | 8.3:-59403005 | None:intergenic |
| ATGCTTGTGTCGCCAACTGA+TGG | 0.586363 | 8.3:+59404815 | MS.gene051241:CDS |
| GTCGCAATGCAGGTTTGCAG+GGG | 0.591955 | 8.3:+59404782 | MS.gene051241:intron |
| GATTGCAAACCCCTTTCTTG+AGG | 0.598586 | 8.3:+59404847 | MS.gene051241:CDS |
| TGTGTCGCCAACTGATGGTA+CGG | 0.598668 | 8.3:+59404820 | MS.gene051241:CDS |
| ATCTCGTCCGTACCATCAGT+TGG | 0.614027 | 8.3:-59404827 | None:intergenic |
| CCCCATCTGCCTCAAGAAAG+GGG | 0.629232 | 8.3:-59404856 | None:intergenic |
| CAACAGCTTCATCCAGGACA+AGG | 0.654174 | 8.3:-59402999 | None:intergenic |
| GTTCAAGTCAAGCTTACTGG+TGG | 0.669583 | 8.3:+59400944 | MS.gene051241:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATAAAATAAAAAAGAGAA+AGG | - | chr8.3:59400994-59401013 | None:intergenic | 10.0% |
| !! | ATACATTCATATAATAAATA+GGG | + | chr8.3:59401069-59401088 | MS.gene051241:intron | 10.0% |
| !! | TTGATTTAACAATAAATTTA+AGG | + | chr8.3:59401611-59401630 | MS.gene051241:intron | 10.0% |
| !!! | AAATTTTTTTATTCAAAAGA+TGG | - | chr8.3:59401962-59401981 | None:intergenic | 10.0% |
| !! | GATACATTCATATAATAAAT+AGG | + | chr8.3:59401068-59401087 | MS.gene051241:intron | 15.0% |
| !! | TATTTATTTCAATGTGTTAT+AGG | - | chr8.3:59403165-59403184 | None:intergenic | 15.0% |
| !! | TGTTAAGAAAAAAAAAAACA+TGG | - | chr8.3:59403062-59403081 | None:intergenic | 15.0% |
| !! | TTTAAGAAAATGAAAATGTT+TGG | - | chr8.3:59401837-59401856 | None:intergenic | 15.0% |
| !!! | AAATGTTTTCTTATTTGTTT+TGG | + | chr8.3:59403595-59403614 | MS.gene051241:intron | 15.0% |
| !!! | CAAAATTCATATATTTGTTT+TGG | - | chr8.3:59404705-59404724 | None:intergenic | 15.0% |
| !!! | GTTTTTTTTGTTTTGTTTTA+AGG | + | chr8.3:59402344-59402363 | MS.gene051241:intron | 15.0% |
| !!! | TTATGTTTTTAAAAAAGAGA+AGG | - | chr8.3:59404153-59404172 | None:intergenic | 15.0% |
| !!! | TTGATTTGCTTTTAATATTA+TGG | + | chr8.3:59402104-59402123 | MS.gene051241:intron | 15.0% |
| !!! | TTTGTTTTTGAAGAAAAAAA+GGG | + | chr8.3:59403253-59403272 | MS.gene051241:intron | 15.0% |
| !! | AAACAAAAAAAACATACACA+AGG | - | chr8.3:59402337-59402356 | None:intergenic | 20.0% |
| !! | AAACAAAAAAATGTCAACTT+AGG | - | chr8.3:59403419-59403438 | None:intergenic | 20.0% |
| !! | AAACCTTGTTAAAATATAGA+AGG | + | chr8.3:59403315-59403334 | MS.gene051241:intron | 20.0% |
| !! | AAAGTAAACATTGAAGATTA+TGG | - | chr8.3:59402899-59402918 | None:intergenic | 20.0% |
| !! | AATAATAAACTTGACATGAA+AGG | - | chr8.3:59403771-59403790 | None:intergenic | 20.0% |
| !! | AATGTAAAATGATACATGTT+TGG | + | chr8.3:59401571-59401590 | MS.gene051241:intron | 20.0% |
| !! | AGAATTGAATTTATGATGTT+TGG | - | chr8.3:59401726-59401745 | None:intergenic | 20.0% |
| !! | ATTAAAGCTAAATATACACA+AGG | - | chr8.3:59403703-59403722 | None:intergenic | 20.0% |
| !! | ATTCATATAATAAATAGGGT+TGG | + | chr8.3:59401073-59401092 | MS.gene051241:intron | 20.0% |
| !! | ATTCCTTATTGATAAAACAT+TGG | + | chr8.3:59404224-59404243 | MS.gene051241:intron | 20.0% |
| !! | CAATAAACATAAAGTAAGTT+TGG | - | chr8.3:59402801-59402820 | None:intergenic | 20.0% |
| !! | GAATTGAATTTATGATGTTT+GGG | - | chr8.3:59401725-59401744 | None:intergenic | 20.0% |
| !! | TATTGATAAAACATTGGAAA+TGG | + | chr8.3:59404230-59404249 | MS.gene051241:intron | 20.0% |
| !! | TTAAAGCTAAATATACACAA+GGG | - | chr8.3:59403702-59403721 | None:intergenic | 20.0% |
| !!! | AAAATAAAACACATGGATTT+TGG | - | chr8.3:59404043-59404062 | None:intergenic | 20.0% |
| !!! | AACAAATATATGAATTTTGC+TGG | + | chr8.3:59404706-59404725 | MS.gene051241:intron | 20.0% |
| !!! | AACTAAAAGTGATTTGTTTT+TGG | - | chr8.3:59401409-59401428 | None:intergenic | 20.0% |
| !!! | ACAAATATATGAATTTTGCT+GGG | + | chr8.3:59404707-59404726 | MS.gene051241:intron | 20.0% |
| !!! | ACTAAAAGTGATTTGTTTTT+GGG | - | chr8.3:59401408-59401427 | None:intergenic | 20.0% |
| !!! | AGCTTTTTATCTGAAATAAT+TGG | + | chr8.3:59402403-59402422 | MS.gene051241:intron | 20.0% |
| !!! | ATAATTGATTTTGACATGTT+TGG | - | chr8.3:59401787-59401806 | None:intergenic | 20.0% |
| !!! | CTTTGTTTTTGAAGAAAAAA+AGG | + | chr8.3:59403252-59403271 | MS.gene051241:intron | 20.0% |
| !!! | GCTTTTTATCTGAAATAATT+GGG | + | chr8.3:59402404-59402423 | MS.gene051241:intron | 20.0% |
| !!! | TCTTATCATTAAATTGATTC+TGG | + | chr8.3:59401025-59401044 | MS.gene051241:intron | 20.0% |
| !!! | TTAGCAAAATTTGTTGATAA+AGG | + | chr8.3:59400920-59400939 | MS.gene051241:CDS | 20.0% |
| !!! | TTATGGATATTCTTATTTGT+AGG | + | chr8.3:59402121-59402140 | MS.gene051241:intron | 20.0% |
| !!! | TTTCCAATGTTTTATCAATA+AGG | - | chr8.3:59404230-59404249 | None:intergenic | 20.0% |
| !!! | TTTCCTTCTATATTTTAACA+AGG | - | chr8.3:59403321-59403340 | None:intergenic | 20.0% |
| ! | AAAATGAAAATGTTTGGATG+AGG | - | chr8.3:59401831-59401850 | None:intergenic | 25.0% |
| ! | AAAGTTCATCTAATTCATTC+AGG | + | chr8.3:59403212-59403231 | MS.gene051241:intron | 25.0% |
| ! | AAATACAGCTTGTATAGAAA+GGG | + | chr8.3:59403180-59403199 | MS.gene051241:intron | 25.0% |
| ! | AAATGAAAATGTTTGGATGA+GGG | - | chr8.3:59401830-59401849 | None:intergenic | 25.0% |
| ! | AAGTTCATCTAATTCATTCA+GGG | + | chr8.3:59403213-59403232 | MS.gene051241:intron | 25.0% |
| ! | AATAATTGCTCTATTTGGAT+TGG | + | chr8.3:59402541-59402560 | MS.gene051241:intron | 25.0% |
| ! | AATACTTGTTTCAGAACTTA+TGG | + | chr8.3:59402598-59402617 | MS.gene051241:intron | 25.0% |
| ! | ATAATTGCTCTATTTGGATT+GGG | + | chr8.3:59402542-59402561 | MS.gene051241:intron | 25.0% |
| ! | ATGATCAGTACTAGAAAAAA+GGG | + | chr8.3:59404458-59404477 | MS.gene051241:intron | 25.0% |
| ! | ATTCACTCAAAATCAATTCT+CGG | - | chr8.3:59401138-59401157 | None:intergenic | 25.0% |
| ! | CAAAATCAATTATACATGTG+TGG | + | chr8.3:59401794-59401813 | MS.gene051241:intron | 25.0% |
| ! | CACAGTTAATAACATACATA+AGG | - | chr8.3:59402375-59402394 | None:intergenic | 25.0% |
| ! | CAGATGAATAGATAAGAAAA+GGG | + | chr8.3:59404316-59404335 | MS.gene051241:intron | 25.0% |
| ! | GATGAAATAATTGCTCTATT+TGG | + | chr8.3:59402536-59402555 | MS.gene051241:intron | 25.0% |
| ! | GGCTTAAAGTAATTTATGTT+TGG | + | chr8.3:59401046-59401065 | MS.gene051241:intron | 25.0% |
| ! | TAAATACAGCTTGTATAGAA+AGG | + | chr8.3:59403179-59403198 | MS.gene051241:intron | 25.0% |
| ! | TACAACAAAACAAATGTCTT+GGG | - | chr8.3:59404513-59404532 | None:intergenic | 25.0% |
| ! | TCAGATGAATAGATAAGAAA+AGG | + | chr8.3:59404315-59404334 | MS.gene051241:intron | 25.0% |
| ! | TGATTCTGTAAAATTGATTG+TGG | + | chr8.3:59401158-59401177 | MS.gene051241:intron | 25.0% |
| ! | TTGAAAAAATAAGTACGAGT+AGG | - | chr8.3:59403903-59403922 | None:intergenic | 25.0% |
| !! | AAACGAGAGATATTCTAAAA+AGG | + | chr8.3:59402661-59402680 | MS.gene051241:intron | 25.0% |
| !! | AATGTTTACTTTAGAGATGA+GGG | + | chr8.3:59402907-59402926 | MS.gene051241:intron | 25.0% |
| !! | AATTCAAATTTTGCCAAGAA+TGG | - | chr8.3:59404571-59404590 | None:intergenic | 25.0% |
| !! | AATTTGTCACAAAGATGTTT+TGG | + | chr8.3:59404259-59404278 | MS.gene051241:intron | 25.0% |
| !! | ATTCAAATTTTGCCAAGAAT+GGG | - | chr8.3:59404570-59404589 | None:intergenic | 25.0% |
| !! | CAAGTAAAATCAATTTTGGA+GGG | - | chr8.3:59401301-59401320 | None:intergenic | 25.0% |
| !! | GCTTCAAGTAAAATCAATTT+TGG | - | chr8.3:59401305-59401324 | None:intergenic | 25.0% |
| !! | GTATTTTGTAGAATTGCTTT+TGG | - | chr8.3:59401446-59401465 | None:intergenic | 25.0% |
| !! | TCAAGTAAAATCAATTTTGG+AGG | - | chr8.3:59401302-59401321 | None:intergenic | 25.0% |
| !! | TTAATACAATTCTTTGCTGT+GGG | + | chr8.3:59402514-59402533 | MS.gene051241:intron | 25.0% |
| !!! | ATTTGTTTTGTTGTACAAGT+AGG | + | chr8.3:59404518-59404537 | MS.gene051241:intron | 25.0% |
| !!! | CTAAAAGTGATTTGTTTTTG+GGG | - | chr8.3:59401407-59401426 | None:intergenic | 25.0% |
| !!! | GTGAGTTTTTCAAATTGTAA+GGG | + | chr8.3:59402426-59402445 | MS.gene051241:intron | 25.0% |
| !!! | GTTTTTAAAAAAGAGAAGGT+GGG | - | chr8.3:59404149-59404168 | None:intergenic | 25.0% |
| !!! | TCTATTTTAAGAGTGAAACT+AGG | + | chr8.3:59403868-59403887 | MS.gene051241:intron | 25.0% |
| !!! | TGTTTTTAAAAAAGAGAAGG+TGG | - | chr8.3:59404150-59404169 | None:intergenic | 25.0% |
| !!! | TTTCCTATTGAACCATTTTT+GGG | + | chr8.3:59402455-59402474 | MS.gene051241:intron | 25.0% |
| !!! | TTTTAATTCATCACCCATTT+TGG | - | chr8.3:59403504-59403523 | None:intergenic | 25.0% |
| AAGGGAAAACACTTACTAAT+TGG | + | chr8.3:59404334-59404353 | MS.gene051241:intron | 30.0% | |
| ACAACCTTGTAAAATCATCT+CGG | + | chr8.3:59403837-59403856 | MS.gene051241:intron | 30.0% | |
| ACAATATTACCTAAGCACTA+AGG | + | chr8.3:59403450-59403469 | MS.gene051241:intron | 30.0% | |
| AGTTAAAGCAGTATCAATGT+GGG | - | chr8.3:59403563-59403582 | None:intergenic | 30.0% | |
| CAATATTACCTAAGCACTAA+GGG | + | chr8.3:59403451-59403470 | MS.gene051241:intron | 30.0% | |
| CAGCACAAAAATAAAACACA+TGG | - | chr8.3:59404050-59404069 | None:intergenic | 30.0% | |
| CTACAATTTCTAACTGTGTT+TGG | + | chr8.3:59401191-59401210 | MS.gene051241:intron | 30.0% | |
| CTTAATACAATTCTTTGCTG+TGG | + | chr8.3:59402513-59402532 | MS.gene051241:intron | 30.0% | |
| GAAAAAAAAAAACATGGAGC+TGG | - | chr8.3:59403056-59403075 | None:intergenic | 30.0% | |
| GATGATCAGTACTAGAAAAA+AGG | + | chr8.3:59404457-59404476 | MS.gene051241:intron | 30.0% | |
| GTACAACAAAACAAATGTCT+TGG | - | chr8.3:59404514-59404533 | None:intergenic | 30.0% | |
| GTTTGCTTGCAAATCTTTAT+TGG | + | chr8.3:59404375-59404394 | MS.gene051241:intron | 30.0% | |
| TAAAAAAGAGAAAGGTGAGT+TGG | - | chr8.3:59400986-59401005 | None:intergenic | 30.0% | |
| TTATAGGAAAGATGAAGTCA+TGG | - | chr8.3:59403149-59403168 | None:intergenic | 30.0% | |
| TTTGGGCATATTATTACTGT+TGG | + | chr8.3:59404744-59404763 | MS.gene051241:intron | 30.0% | |
| ! | ACTATATAGTTACTTTGCAG+AGG | - | chr8.3:59403953-59403972 | None:intergenic | 30.0% |
| ! | ATATTCTAAAAAGGTTGAGG+TGG | + | chr8.3:59402670-59402689 | MS.gene051241:intron | 30.0% |
| ! | ATGTTTACTTTAGAGATGAG+GGG | + | chr8.3:59402908-59402927 | MS.gene051241:intron | 30.0% |
| ! | ATTTGTTGAATTGTAGTGAC+AGG | + | chr8.3:59402946-59402965 | MS.gene051241:intron | 30.0% |
| ! | CAATGTTTACTTTAGAGATG+AGG | + | chr8.3:59402906-59402925 | MS.gene051241:intron | 30.0% |
| ! | CTATATAGTTACTTTGCAGA+GGG | - | chr8.3:59403952-59403971 | None:intergenic | 30.0% |
| ! | CTTTCCTATTGAACCATTTT+TGG | + | chr8.3:59402454-59402473 | MS.gene051241:intron | 30.0% |
| ! | GAGATATTCTAAAAAGGTTG+AGG | + | chr8.3:59402667-59402686 | MS.gene051241:intron | 30.0% |
| ! | TGGTTCTTTCAATTTTGCAA+TGG | + | chr8.3:59402843-59402862 | MS.gene051241:intron | 30.0% |
| ! | TTCAAATTTTGCCAAGAATG+GGG | - | chr8.3:59404569-59404588 | None:intergenic | 30.0% |
| !! | GGTGAGTTTTTCAAATTGTA+AGG | + | chr8.3:59402425-59402444 | MS.gene051241:intron | 30.0% |
| !! | TTCCTATTGAACCATTTTTG+GGG | + | chr8.3:59402456-59402475 | MS.gene051241:intron | 30.0% |
| !!! | AAGCTACAATTTGTTGCTTT+TGG | - | chr8.3:59401656-59401675 | None:intergenic | 30.0% |
| !!! | TAGGTCAATATGTCTTGTTT+TGG | + | chr8.3:59402140-59402159 | MS.gene051241:intron | 30.0% |
| AATTCTTGTAGAAGCTGAAC+TGG | - | chr8.3:59401500-59401519 | None:intergenic | 35.0% | |
| AGAGTCAAAAGTGATTCTAG+AGG | - | chr8.3:59401753-59401772 | None:intergenic | 35.0% | |
| CACTTACTAATTGGAACTGA+TGG | + | chr8.3:59404343-59404362 | MS.gene051241:intron | 35.0% | |
| GAAAGTTCAGTCATGCAATA+TGG | + | chr8.3:59403657-59403676 | MS.gene051241:intron | 35.0% | |
| GAGTTAAAGCAGTATCAATG+TGG | - | chr8.3:59403564-59403583 | None:intergenic | 35.0% | |
| TAAACGTTTGTTCGCAGTTA+TGG | + | chr8.3:59402631-59402650 | MS.gene051241:intron | 35.0% | |
| TAACTGCGAACAAACGTTTA+AGG | - | chr8.3:59402631-59402650 | None:intergenic | 35.0% | |
| TACAATTAAGCCAAGACTTC+TGG | - | chr8.3:59404109-59404128 | None:intergenic | 35.0% | |
| TACACCTCGAAAATCAATTC+TGG | - | chr8.3:59401234-59401253 | None:intergenic | 35.0% | |
| TACCCCAAAAATGGTTCAAT+AGG | - | chr8.3:59402461-59402480 | None:intergenic | 35.0% | |
| ! | TAGTGACAGGTACTCTAAAA+GGG | + | chr8.3:59402959-59402978 | MS.gene051241:intron | 35.0% |
| ! | TCTATTTGGATTGGGTTTCT+AGG | + | chr8.3:59402550-59402569 | MS.gene051241:intron | 35.0% |
| ! | TGTAGTTTTCAGTGGATCAT+CGG | - | chr8.3:59404079-59404098 | None:intergenic | 35.0% |
| ! | TTTGCAATGGATTCTTGTCT+TGG | + | chr8.3:59402856-59402875 | MS.gene051241:intron | 35.0% |
| ! | TTTGCCGAGATGATTTTACA+AGG | - | chr8.3:59403844-59403863 | None:intergenic | 35.0% |
| !! | AGAATCACTTTTGACTCTCT+AGG | + | chr8.3:59401755-59401774 | MS.gene051241:intron | 35.0% |
| !! | GAAGCTGTTGAGTTTTTAAG+AGG | + | chr8.3:59403012-59403031 | MS.gene051241:CDS | 35.0% |
| !! | TTCTAGTACTGATCATCATG+TGG | - | chr8.3:59404454-59404473 | None:intergenic | 35.0% |
| !!! | AACCATTTTTGGGGTATTCT+TGG | + | chr8.3:59402465-59402484 | MS.gene051241:intron | 35.0% |
| AAAACTCAACAGCTTCATCC+AGG | - | chr8.3:59403008-59403027 | None:intergenic | 40.0% | |
| ACATGTGTCTTTGCAGTGTT+TGG | + | chr8.3:59401862-59401881 | MS.gene051241:intron | 40.0% | |
| CACCAAGAATACCCCAAAAA+TGG | - | chr8.3:59402470-59402489 | None:intergenic | 40.0% | |
| CATTCAGGGCATATGATTGT+TGG | + | chr8.3:59403227-59403246 | MS.gene051241:intron | 40.0% | |
| GAACCATAGCATGAACACAA+AGG | - | chr8.3:59402829-59402848 | None:intergenic | 40.0% | |
| GTAAAAGTCCCTTAGTGCTT+AGG | - | chr8.3:59403462-59403481 | None:intergenic | 40.0% | |
| GTAGTGACAGGTACTCTAAA+AGG | + | chr8.3:59402958-59402977 | MS.gene051241:intron | 40.0% | |
| TCAGTACTAGAAAAAAGGGC+AGG | + | chr8.3:59404462-59404481 | MS.gene051241:intron | 40.0% | |
| TCTCCTTTGTGTTCATGCTA+TGG | + | chr8.3:59402823-59402842 | MS.gene051241:intron | 40.0% | |
| TGGCTTTCGCTATCACAATT+TGG | - | chr8.3:59403484-59403503 | None:intergenic | 40.0% | |
| TGTTTGGTATCTGTGTCTGT+CGG | + | chr8.3:59401878-59401897 | MS.gene051241:intron | 40.0% | |
| ! | GTAGTTTTCAGTGGATCATC+GGG | - | chr8.3:59404078-59404097 | None:intergenic | 40.0% |
| ! | GTCTGATCTGTAGTTTTCAG+TGG | - | chr8.3:59404087-59404106 | None:intergenic | 40.0% |
| ! | GTGATAGCGAAAGCCAAAAT+GGG | + | chr8.3:59403488-59403507 | MS.gene051241:intron | 40.0% |
| ! | TGTGATAGCGAAAGCCAAAA+TGG | + | chr8.3:59403487-59403506 | MS.gene051241:intron | 40.0% |
| ! | TGTTTGGTTCCACTTCTAGA+GGG | + | chr8.3:59401207-59401226 | MS.gene051241:intron | 40.0% |
| !! | ATTGGGTTTCTAGGTTTTGG+GGG | + | chr8.3:59402559-59402578 | MS.gene051241:intron | 40.0% |
| !! | GATTGGGTTTCTAGGTTTTG+GGG | + | chr8.3:59402558-59402577 | MS.gene051241:intron | 40.0% |
| !! | GGATTGGGTTTCTAGGTTTT+GGG | + | chr8.3:59402557-59402576 | MS.gene051241:intron | 40.0% |
| !! | TGGATTGGGTTTCTAGGTTT+TGG | + | chr8.3:59402556-59402575 | MS.gene051241:intron | 40.0% |
| !!! | CTAGTTTTACTCCCCATTCT+TGG | + | chr8.3:59404555-59404574 | MS.gene051241:intron | 40.0% |
| AAGCTGAACTGGTTGTGCAT+GGG | - | chr8.3:59401489-59401508 | None:intergenic | 45.0% | |
| ACAGATCAGACCAGAAGTCT+TGG | + | chr8.3:59404096-59404115 | MS.gene051241:CDS | 45.0% | |
| CCAGGACAAGGTTAAGTAAC+TGG | - | chr8.3:59402990-59403009 | None:intergenic | 45.0% | |
| CCAGTTACTTAACCTTGTCC+TGG | + | chr8.3:59402987-59403006 | MS.gene051241:CDS | 45.0% | |
| GATTGCAAACCCCTTTCTTG+AGG | + | chr8.3:59404847-59404866 | MS.gene051241:CDS | 45.0% | |
| GCATGACTGAACTTTCAAGC+AGG | - | chr8.3:59403653-59403672 | None:intergenic | 45.0% | |
| GGTGTTCAAGTCAAGCTTAC+TGG | + | chr8.3:59400941-59400960 | MS.gene051241:CDS | 45.0% | |
| GTTCAAGTCAAGCTTACTGG+TGG | + | chr8.3:59400944-59400963 | MS.gene051241:CDS | 45.0% | |
| TGGGAGGAAAGAAACTGTTC+TGG | + | chr8.3:59400895-59400914 | MS.gene051241:CDS | 45.0% | |
| ! | AATTCTGGACCCTCTAGAAG+TGG | - | chr8.3:59401219-59401238 | None:intergenic | 45.0% |
| ! | GCAATGGATTCTTGTCTTGG+AGG | + | chr8.3:59402859-59402878 | MS.gene051241:intron | 45.0% |
| ! | GGGATGACAAAGCAGGTTTT+GGG | + | chr8.3:59404727-59404746 | MS.gene051241:intron | 45.0% |
| ! | GTGTTTGGTTCCACTTCTAG+AGG | + | chr8.3:59401206-59401225 | MS.gene051241:intron | 45.0% |
| ! | TGGGATGACAAAGCAGGTTT+TGG | + | chr8.3:59404726-59404745 | MS.gene051241:intron | 45.0% |
| ! | TTTTGCTGGGATGACAAAGC+AGG | + | chr8.3:59404720-59404739 | MS.gene051241:intron | 45.0% |
| !! | AACTGCTTTTGTCGCAATGC+AGG | + | chr8.3:59404772-59404791 | MS.gene051241:intron | 45.0% |
| !! | GGGTCCAGAATTGATTTTCG+AGG | + | chr8.3:59401227-59401246 | MS.gene051241:intron | 45.0% |
| !!! | AATTTTTTAAGAAAATTAAA+AGG | - | chr8.3:59403279-59403298 | None:intergenic | 5.0% |
| !!! | ATTTTGAAATTTATAAATTT+TGG | + | chr8.3:59403111-59403130 | MS.gene051241:intron | 5.0% |
| !!! | TTTTTTAAAAACATAATTTA+TGG | + | chr8.3:59404157-59404176 | MS.gene051241:intron | 5.0% |
| AACCCCTTTCTTGAGGCAGA+TGG | + | chr8.3:59404854-59404873 | MS.gene051241:CDS | 50.0% | |
| AAGCTTACTGGTGGCAGACA+AGG | + | chr8.3:59400953-59400972 | MS.gene051241:CDS | 50.0% | |
| ACCCCTTTCTTGAGGCAGAT+GGG | + | chr8.3:59404855-59404874 | MS.gene051241:CDS | 50.0% | |
| AGCTGAACTGGTTGTGCATG+GGG | - | chr8.3:59401488-59401507 | None:intergenic | 50.0% | |
| ATCTCGTCCGTACCATCAGT+TGG | - | chr8.3:59404830-59404849 | None:intergenic | 50.0% | |
| ATGCTTGTGTCGCCAACTGA+TGG | + | chr8.3:59404815-59404834 | MS.gene051241:CDS | 50.0% | |
| CAACAGCTTCATCCAGGACA+AGG | - | chr8.3:59403002-59403021 | None:intergenic | 50.0% | |
| GAAGCTGAACTGGTTGTGCA+TGG | - | chr8.3:59401490-59401509 | None:intergenic | 50.0% | |
| TGTCGCAATGCAGGTTTGCA+GGG | + | chr8.3:59404781-59404800 | MS.gene051241:intron | 50.0% | |
| TGTGTCGCCAACTGATGGTA+CGG | + | chr8.3:59404820-59404839 | MS.gene051241:CDS | 50.0% | |
| TTGTCGCAATGCAGGTTTGC+AGG | + | chr8.3:59404780-59404799 | MS.gene051241:intron | 50.0% | |
| ! | GGGGTATTCTTGGTGAGCAT+TGG | + | chr8.3:59402475-59402494 | MS.gene051241:intron | 50.0% |
| CCCCATCTGCCTCAAGAAAG+GGG | - | chr8.3:59404859-59404878 | None:intergenic | 55.0% | |
| CCCCTTTCTTGAGGCAGATG+GGG | + | chr8.3:59404856-59404875 | MS.gene051241:CDS | 55.0% | |
| GCCCCATCTGCCTCAAGAAA+GGG | - | chr8.3:59404860-59404879 | None:intergenic | 55.0% | |
| GTCGCAATGCAGGTTTGCAG+GGG | + | chr8.3:59404782-59404801 | MS.gene051241:intron | 55.0% | |
| GGCCCCATCTGCCTCAAGAA+AGG | - | chr8.3:59404861-59404880 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 59400893 | 59404883 | 59400893 | ID=MS.gene051241 |
| chr8.3 | mRNA | 59400893 | 59404883 | 59400893 | ID=MS.gene051241.t1;Parent=MS.gene051241 |
| chr8.3 | exon | 59400893 | 59400974 | 59400893 | ID=MS.gene051241.t1.exon1;Parent=MS.gene051241.t1 |
| chr8.3 | CDS | 59400893 | 59400974 | 59400893 | ID=cds.MS.gene051241.t1;Parent=MS.gene051241.t1 |
| chr8.3 | exon | 59402962 | 59403033 | 59402962 | ID=MS.gene051241.t1.exon2;Parent=MS.gene051241.t1 |
| chr8.3 | CDS | 59402962 | 59403033 | 59402962 | ID=cds.MS.gene051241.t1;Parent=MS.gene051241.t1 |
| chr8.3 | exon | 59404073 | 59404125 | 59404073 | ID=MS.gene051241.t1.exon3;Parent=MS.gene051241.t1 |
| chr8.3 | CDS | 59404073 | 59404125 | 59404073 | ID=cds.MS.gene051241.t1;Parent=MS.gene051241.t1 |
| chr8.3 | exon | 59404794 | 59404883 | 59404794 | ID=MS.gene051241.t1.exon4;Parent=MS.gene051241.t1 |
| chr8.3 | CDS | 59404794 | 59404883 | 59404794 | ID=cds.MS.gene051241.t1;Parent=MS.gene051241.t1 |
| Gene Sequence |
| Protein sequence |
