Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072491.t1 | XP_003626251.1 | 93.3 | 344 | 15 | 3 | 19 | 360 | 28 | 365 | 5.50E-106 | 394.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072491.t1 | Q84J88 | 57.7 | 71 | 30 | 0 | 19 | 89 | 25 | 95 | 4.6e-16 | 87.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072491.t1 | A2Q330 | 93.3 | 344 | 15 | 3 | 19 | 360 | 28 | 365 | 4.0e-106 | 394.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050900 | MS.gene072491 | 0.851081 | 1.12E-60 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072491.t1 | MTR_7g113110 | 93.842 | 341 | 13 | 3 | 22 | 360 | 31 | 365 | 0.0 | 540 |
| MS.gene072491.t1 | MTR_1g083310 | 33.824 | 408 | 199 | 16 | 14 | 360 | 5 | 402 | 4.80e-35 | 132 |
| MS.gene072491.t1 | MTR_4g119820 | 47.541 | 122 | 61 | 1 | 19 | 137 | 69 | 190 | 2.06e-24 | 102 |
| MS.gene072491.t1 | MTR_1g107565 | 56.000 | 75 | 33 | 0 | 14 | 88 | 3 | 77 | 3.66e-22 | 96.7 |
| MS.gene072491.t1 | MTR_7g108560 | 50.617 | 81 | 36 | 1 | 12 | 88 | 6 | 86 | 2.97e-19 | 87.4 |
| MS.gene072491.t1 | MTR_2g022250 | 55.882 | 68 | 30 | 0 | 21 | 88 | 7 | 74 | 2.99e-18 | 86.3 |
| MS.gene072491.t1 | MTR_4g117220 | 52.055 | 73 | 35 | 0 | 21 | 93 | 7 | 79 | 2.07e-17 | 83.6 |
| MS.gene072491.t1 | MTR_4g117140 | 52.055 | 73 | 35 | 0 | 21 | 93 | 7 | 79 | 2.10e-17 | 84.0 |
| MS.gene072491.t1 | MTR_1g082650 | 52.941 | 68 | 32 | 0 | 21 | 88 | 7 | 74 | 8.13e-17 | 82.0 |
| MS.gene072491.t1 | MTR_2g436830 | 33.831 | 201 | 97 | 7 | 19 | 183 | 10 | 210 | 1.34e-15 | 76.6 |
| MS.gene072491.t1 | MTR_2g022240 | 54.412 | 68 | 31 | 0 | 21 | 88 | 7 | 74 | 6.76e-15 | 75.9 |
| MS.gene072491.t1 | MTR_1g092670 | 45.714 | 70 | 38 | 0 | 24 | 93 | 4 | 73 | 1.05e-13 | 66.2 |
| MS.gene072491.t1 | MTR_3g067750 | 43.478 | 69 | 39 | 0 | 19 | 87 | 7 | 75 | 2.10e-13 | 68.9 |
| MS.gene072491.t1 | MTR_2g018790 | 37.500 | 112 | 64 | 2 | 26 | 136 | 10 | 116 | 9.19e-13 | 68.6 |
| MS.gene072491.t1 | MTR_8g091420 | 50.000 | 62 | 31 | 0 | 28 | 89 | 33 | 94 | 3.47e-12 | 64.3 |
| MS.gene072491.t1 | MTR_3g087770 | 45.455 | 66 | 36 | 0 | 24 | 89 | 30 | 95 | 5.98e-12 | 63.5 |
| MS.gene072491.t1 | MTR_6g026890 | 38.710 | 62 | 38 | 0 | 28 | 89 | 20 | 81 | 7.65e-12 | 63.2 |
| MS.gene072491.t1 | MTR_3g073670 | 44.444 | 63 | 35 | 0 | 27 | 89 | 29 | 91 | 1.03e-11 | 62.8 |
| MS.gene072491.t1 | MTR_1g030630 | 39.394 | 66 | 40 | 0 | 24 | 89 | 25 | 90 | 3.01e-11 | 61.2 |
| MS.gene072491.t1 | MTR_2g091235 | 47.541 | 61 | 32 | 0 | 28 | 88 | 6 | 66 | 4.36e-11 | 60.8 |
| MS.gene072491.t1 | MTR_3g117890 | 40.000 | 75 | 39 | 2 | 16 | 89 | 23 | 92 | 4.40e-11 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072491.t1 | AT1G56210 | 30.878 | 353 | 200 | 9 | 24 | 360 | 40 | 364 | 4.71e-24 | 102 |
| MS.gene072491.t1 | AT5G27690 | 48.454 | 97 | 49 | 1 | 19 | 115 | 25 | 120 | 9.65e-22 | 95.1 |
| MS.gene072491.t1 | AT3G06130 | 52.941 | 68 | 32 | 0 | 21 | 88 | 7 | 74 | 4.10e-18 | 85.9 |
| MS.gene072491.t1 | AT3G06130 | 52.941 | 68 | 32 | 0 | 21 | 88 | 7 | 74 | 6.10e-18 | 84.3 |
| MS.gene072491.t1 | AT1G23000 | 48.000 | 75 | 39 | 0 | 14 | 88 | 3 | 77 | 8.47e-18 | 84.0 |
| MS.gene072491.t1 | AT5G19090 | 51.471 | 68 | 33 | 0 | 21 | 88 | 7 | 74 | 3.03e-17 | 83.2 |
| MS.gene072491.t1 | AT5G19090 | 51.471 | 68 | 33 | 0 | 21 | 88 | 7 | 74 | 3.03e-17 | 83.2 |
| MS.gene072491.t1 | AT1G23000 | 48.000 | 75 | 39 | 0 | 14 | 88 | 63 | 137 | 3.37e-17 | 82.8 |
| MS.gene072491.t1 | AT5G19090 | 51.471 | 68 | 33 | 0 | 21 | 88 | 7 | 74 | 3.97e-17 | 83.2 |
| MS.gene072491.t1 | AT5G19090 | 51.471 | 68 | 33 | 0 | 21 | 88 | 7 | 74 | 3.97e-17 | 83.2 |
| MS.gene072491.t1 | AT5G19090 | 51.471 | 68 | 33 | 0 | 21 | 88 | 7 | 74 | 3.97e-17 | 83.2 |
| MS.gene072491.t1 | AT1G66240 | 41.791 | 67 | 39 | 0 | 22 | 88 | 31 | 97 | 4.21e-14 | 68.2 |
| MS.gene072491.t1 | AT3G05220 | 45.455 | 66 | 36 | 0 | 23 | 88 | 9 | 74 | 6.53e-14 | 73.2 |
| MS.gene072491.t1 | AT5G37860 | 46.970 | 66 | 35 | 0 | 23 | 88 | 9 | 74 | 2.05e-13 | 70.1 |
| MS.gene072491.t1 | AT3G56891 | 38.571 | 70 | 43 | 0 | 20 | 89 | 12 | 81 | 3.54e-12 | 64.7 |
| MS.gene072491.t1 | AT1G06330 | 45.902 | 61 | 33 | 0 | 28 | 88 | 6 | 66 | 9.86e-12 | 62.8 |
| MS.gene072491.t1 | AT3G56240 | 39.706 | 68 | 41 | 0 | 22 | 89 | 1 | 68 | 1.27e-11 | 61.6 |
| MS.gene072491.t1 | AT3G56240 | 39.706 | 68 | 41 | 0 | 22 | 89 | 1 | 68 | 1.27e-11 | 61.6 |
| MS.gene072491.t1 | AT3G56891 | 41.379 | 58 | 34 | 0 | 32 | 89 | 1 | 58 | 6.43e-11 | 60.5 |
Find 100 sgRNAs with CRISPR-Local
Find 121 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCCAGGACAAGTTTCATTTA+TGG | 0.212169 | 7.3:+3788624 | MS.gene072491:CDS |
| GGTGGTGGTGGAAGGGGTGG+TGG | 0.221857 | 7.3:+3788316 | MS.gene072491:CDS |
| GGTCATGGGCCTTATGGGCC+TGG | 0.225833 | 7.3:+3788595 | MS.gene072491:CDS |
| ATGCATGGTCATGGGCCTTA+TGG | 0.229042 | 7.3:+3788589 | MS.gene072491:CDS |
| GGGCCTTATGGGCCTGGGTC+TGG | 0.244736 | 7.3:+3788601 | MS.gene072491:CDS |
| AAATTGTACACCGCCTCTTC+CGG | 0.272718 | 7.3:-3788347 | None:intergenic |
| CCAGGACAAGTTTCATTTAT+GGG | 0.278854 | 7.3:+3788625 | MS.gene072491:CDS |
| GGTTGTAGCTGTTGTTCTTC+TGG | 0.302379 | 7.3:-3787706 | None:intergenic |
| GGTGGTGGTGGTGGAAGGGG+TGG | 0.306405 | 7.3:+3788313 | MS.gene072491:CDS |
| CCATAACTCAGCTCGTTTAC+CGG | 0.326210 | 7.3:-3788101 | None:intergenic |
| AACCTCCTCCTTCCGGTGAT+TGG | 0.333845 | 7.3:+3788554 | MS.gene072491:CDS |
| AAGGAATGGAATTTACTATC+AGG | 0.340004 | 7.3:+3788492 | MS.gene072491:CDS |
| TCCAGCCGGTAGCCAGTTAC+CGG | 0.342016 | 7.3:+3788408 | MS.gene072491:CDS |
| ATTTGTTACCATCTATGCTT+TGG | 0.343245 | 7.3:-3787895 | None:intergenic |
| TGCATGGTCATGGGCCTTAT+GGG | 0.343259 | 7.3:+3788590 | MS.gene072491:CDS |
| AATTGTACACCGCCTCTTCC+GGG | 0.372292 | 7.3:-3788346 | None:intergenic |
| CCCATAAATGAAACTTGTCC+TGG | 0.384336 | 7.3:-3788625 | None:intergenic |
| GTCATGGGCCTTATGGGCCT+GGG | 0.388210 | 7.3:+3788596 | MS.gene072491:CDS |
| TGATTTACCTTGCACATAAG+AGG | 0.389371 | 7.3:-3787727 | None:intergenic |
| TTCCGTGGTGGACTCTCATT+AGG | 0.403542 | 7.3:-3788655 | None:intergenic |
| CAACGAAAACGAAGCTGTTA+AGG | 0.405982 | 7.3:+3788261 | MS.gene072491:CDS |
| ACTTTCGAACCTCCTCCTTC+CGG | 0.406023 | 7.3:+3788547 | MS.gene072491:CDS |
| GTGGTGGAAGGGGTGGTGGA+TGG | 0.408791 | 7.3:+3788320 | MS.gene072491:CDS |
| GGTGGATGGCCACCCGGAAG+AGG | 0.416601 | 7.3:+3788334 | MS.gene072491:CDS |
| TCTTCTGGCGGTGGCGGTGG+CGG | 0.421326 | 7.3:-3787691 | None:intergenic |
| TATGGGCCTGGGTCTGGCCC+AGG | 0.421646 | 7.3:+3788607 | MS.gene072491:CDS |
| AAAGTTCTCCAAAGCATAGA+TGG | 0.424961 | 7.3:+3787887 | MS.gene072491:CDS |
| GGGCCAGACCCAGGCCCATA+AGG | 0.427386 | 7.3:-3788604 | None:intergenic |
| TTTCGTTGCCACCATCGGTC+TGG | 0.428436 | 7.3:-3788246 | None:intergenic |
| TCTGGCGGTGGCGGTGGCGG+TGG | 0.430109 | 7.3:-3787688 | None:intergenic |
| ACCGAAGGTGGTGGTGGTGG+TGG | 0.435763 | 7.3:+3788298 | MS.gene072491:CDS |
| CATGCAACCTTGACAATGAA+TGG | 0.452710 | 7.3:-3787852 | None:intergenic |
| CACATAACTGAGCAAGCATT+AGG | 0.469098 | 7.3:-3788919 | None:intergenic |
| ACCGGTAACTGGCTACCGGC+TGG | 0.470086 | 7.3:-3788409 | None:intergenic |
| TGTTCTTCTGGCGGTGGCGG+TGG | 0.473990 | 7.3:-3787694 | None:intergenic |
| TGCGTATAAGCGTATGAATA+CGG | 0.475765 | 7.3:-3788799 | None:intergenic |
| GCTACCGAAGGTGGTGGTGG+TGG | 0.488456 | 7.3:+3788295 | MS.gene072491:CDS |
| ATTAAGATACTAACACAAAC+CGG | 0.495120 | 7.3:+3788082 | MS.gene072491:CDS |
| CAGAATCAGATGCATGGTCA+TGG | 0.495583 | 7.3:+3788580 | MS.gene072491:CDS |
| TTCATCACTAAATAATTCAA+AGG | 0.496216 | 7.3:-3788893 | None:intergenic |
| GGTGGACTCTCATTAGGTGG+TGG | 0.503750 | 7.3:-3788649 | None:intergenic |
| TGTTGTTCTTCTGGCGGTGG+CGG | 0.512934 | 7.3:-3787697 | None:intergenic |
| CTCATAACATGTCTCACCTC+TGG | 0.514228 | 7.3:-3788382 | None:intergenic |
| AGGGGTGGTGGATGGCCACC+CGG | 0.514999 | 7.3:+3788328 | MS.gene072491:CDS |
| GACGGAGAAAGCAGTGATGA+AGG | 0.519338 | 7.3:+3788220 | MS.gene072491:CDS |
| CCACACACCGTAGGAGAAGC+TGG | 0.521751 | 7.3:-3788706 | None:intergenic |
| ACTTGTCCTGGGCCAGACCC+AGG | 0.526706 | 7.3:-3788613 | None:intergenic |
| CCGGTAAACGAGCTGAGTTA+TGG | 0.526901 | 7.3:+3788101 | MS.gene072491:CDS |
| TTTACTATCAGGGGCAAAGA+GGG | 0.536147 | 7.3:+3788503 | MS.gene072491:CDS |
| GTGGACTCTCATTAGGTGGT+GGG | 0.543443 | 7.3:-3788648 | None:intergenic |
| AGAGTCTCCATTCATTGTCA+AGG | 0.543948 | 7.3:+3787845 | MS.gene072491:CDS |
| AGCTGTTGTTCTTCTGGCGG+TGG | 0.544196 | 7.3:-3787700 | None:intergenic |
| ACAATCGCCATGGAGAATGC+GGG | 0.544675 | 7.3:+3788448 | MS.gene072491:CDS |
| AGGAATGGAATTTACTATCA+GGG | 0.546763 | 7.3:+3788493 | MS.gene072491:CDS |
| GCACCGTATCTCATAGAAGT+AGG | 0.547727 | 7.3:-3788751 | None:intergenic |
| GACGGTGGATACAGAAGGAA+TGG | 0.549953 | 7.3:+3788478 | MS.gene072491:CDS |
| GCTGCTACCGAAGGTGGTGG+TGG | 0.556222 | 7.3:+3788292 | MS.gene072491:CDS |
| AGAATCAGATGCATGGTCAT+GGG | 0.564851 | 7.3:+3788581 | MS.gene072491:CDS |
| TACAATCGCCATGGAGAATG+CGG | 0.565300 | 7.3:+3788447 | MS.gene072491:CDS |
| GTTTAACCCCGCATTCTCCA+TGG | 0.567174 | 7.3:-3788455 | None:intergenic |
| CTGATTCTGATTCCAATCAC+CGG | 0.572547 | 7.3:-3788566 | None:intergenic |
| TTCCAATCACCGGAAGGAGG+AGG | 0.574633 | 7.3:-3788556 | None:intergenic |
| CCAGCTTCTCCTACGGTGTG+TGG | 0.578619 | 7.3:+3788706 | MS.gene072491:CDS |
| GGATGGCCACCCGGAAGAGG+CGG | 0.580046 | 7.3:+3788337 | MS.gene072491:CDS |
| GAAGGTAACCAGACCGATGG+TGG | 0.582367 | 7.3:+3788238 | MS.gene072491:CDS |
| CCATAAATGAAACTTGTCCT+GGG | 0.584326 | 7.3:-3788624 | None:intergenic |
| TGCAACCGGTAACTGGCTAC+CGG | 0.591014 | 7.3:-3788413 | None:intergenic |
| TATCCTACTTCTATGAGATA+CGG | 0.591924 | 7.3:+3788748 | MS.gene072491:CDS |
| TAGTATCTTAATCAGTGTAT+CGG | 0.600120 | 7.3:-3788071 | None:intergenic |
| GTTGTTGTTGCTGCTACCGA+AGG | 0.601315 | 7.3:+3788283 | MS.gene072491:CDS |
| TCACGCACCAGCTTCTCCTA+CGG | 0.604394 | 7.3:+3788699 | MS.gene072491:CDS |
| AATCAGTGTATCGGTGTCGA+CGG | 0.605481 | 7.3:-3788062 | None:intergenic |
| CGTGGTGGACTCTCATTAGG+TGG | 0.609935 | 7.3:-3788652 | None:intergenic |
| GTTGTTGCTGCTACCGAAGG+TGG | 0.610212 | 7.3:+3788286 | MS.gene072491:CDS |
| ATTTACTATCAGGGGCAAAG+AGG | 0.612674 | 7.3:+3788502 | MS.gene072491:CDS |
| TGCGGTGGGTATTGATTCCG+TGG | 0.613009 | 7.3:-3788670 | None:intergenic |
| GTTGCTGCTACCGAAGGTGG+TGG | 0.614150 | 7.3:+3788289 | MS.gene072491:CDS |
| GGAATGGAATTTACTATCAG+GGG | 0.616678 | 7.3:+3788494 | MS.gene072491:CDS |
| GCTACAACCTCTTATGTGCA+AGG | 0.618097 | 7.3:+3787720 | MS.gene072491:CDS |
| GTGCGTGATGATAATGCGGT+GGG | 0.627112 | 7.3:-3788684 | None:intergenic |
| TGGAATCAGAATCAGATGCA+TGG | 0.628714 | 7.3:+3788574 | MS.gene072491:CDS |
| GGGCAAAGAGGGAATAGTGA+AGG | 0.637760 | 7.3:+3788514 | MS.gene072491:CDS |
| TTCTGATTCCAATCACCGGA+AGG | 0.638876 | 7.3:-3788562 | None:intergenic |
| AAGAAACCAAAACCAGAGAA+CGG | 0.639417 | 7.3:+3788172 | MS.gene072491:CDS |
| GCTTCTCCTACGGTGTGTGG+TGG | 0.640745 | 7.3:+3788709 | MS.gene072491:CDS |
| TAAACGACGGTGGATACAGA+AGG | 0.642336 | 7.3:+3788473 | MS.gene072491:CDS |
| CAATCGCCATGGAGAATGCG+GGG | 0.645930 | 7.3:+3788449 | MS.gene072491:CDS |
| TGTAGCTGTTGTTCTTCTGG+CGG | 0.652651 | 7.3:-3787703 | None:intergenic |
| TGATTCCAATCACCGGAAGG+AGG | 0.653656 | 7.3:-3788559 | None:intergenic |
| GGTGCGTGATGATAATGCGG+TGG | 0.667198 | 7.3:-3788685 | None:intergenic |
| ATTTCAAGAAATAAAGCCAG+AGG | 0.668070 | 7.3:+3788366 | MS.gene072491:CDS |
| GATGAAGGTAACCAGACCGA+TGG | 0.668071 | 7.3:+3788235 | MS.gene072491:CDS |
| ACAGATCAGAAACAGAGTGA+CGG | 0.668136 | 7.3:+3788202 | MS.gene072491:CDS |
| AATGCGGGGTTAAACGACGG+TGG | 0.700799 | 7.3:+3788463 | MS.gene072491:CDS |
| AAGTTTCCACCACACACCGT+AGG | 0.702698 | 7.3:-3788715 | None:intergenic |
| GAGAATGCGGGGTTAAACGA+CGG | 0.713153 | 7.3:+3788460 | MS.gene072491:CDS |
| TGTACACCGCCTCTTCCGGG+TGG | 0.716335 | 7.3:-3788343 | None:intergenic |
| GCTGGTGCGTGATGATAATG+CGG | 0.741467 | 7.3:-3788688 | None:intergenic |
| CACCTAATGAGAGTCCACCA+CGG | 0.748035 | 7.3:+3788653 | MS.gene072491:CDS |
| GGTGGGTATTGATTCCGTGG+TGG | 0.773674 | 7.3:-3788667 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATGAAAGAGAGTTATTAAAA+CGG | - | chr7.3:3787777-3787796 | None:intergenic | 20.0% |
| !! | TTCATCACTAAATAATTCAA+AGG | - | chr7.3:3788896-3788915 | None:intergenic | 20.0% |
| !!! | TTTTTCTTCTTCTTTTTGAT+TGG | - | chr7.3:3788139-3788158 | None:intergenic | 20.0% |
| ! | ATTAAGATACTAACACAAAC+CGG | + | chr7.3:3788082-3788101 | MS.gene072491:CDS | 25.0% |
| ! | CAACAAAAAGTAGAAGTAAA+GGG | + | chr7.3:3788037-3788056 | MS.gene072491:CDS | 25.0% |
| ! | TAGTATCTTAATCAGTGTAT+CGG | - | chr7.3:3788074-3788093 | None:intergenic | 25.0% |
| AAGGAATGGAATTTACTATC+AGG | + | chr7.3:3788492-3788511 | MS.gene072491:CDS | 30.0% | |
| AGGAATGGAATTTACTATCA+GGG | + | chr7.3:3788493-3788512 | MS.gene072491:CDS | 30.0% | |
| ATTTCAAGAAATAAAGCCAG+AGG | + | chr7.3:3788366-3788385 | MS.gene072491:CDS | 30.0% | |
| GCAACAAAAAGTAGAAGTAA+AGG | + | chr7.3:3788036-3788055 | MS.gene072491:CDS | 30.0% | |
| TATCCTACTTCTATGAGATA+CGG | + | chr7.3:3788748-3788767 | MS.gene072491:CDS | 30.0% | |
| ! | ATTTGTTACCATCTATGCTT+TGG | - | chr7.3:3787898-3787917 | None:intergenic | 30.0% |
| ! | CTATGTTCATTTGTTAACTC+AGG | + | chr7.3:3787986-3788005 | MS.gene072491:intron | 30.0% |
| !! | AAGTCATGATTTTGATGACT+CGG | + | chr7.3:3788825-3788844 | MS.gene072491:CDS | 30.0% |
| !!! | TTTTTGATTGGTTCTGTATC+AGG | - | chr7.3:3788127-3788146 | None:intergenic | 30.0% |
| AAAGTTCTCCAAAGCATAGA+TGG | + | chr7.3:3787887-3787906 | MS.gene072491:CDS | 35.0% | |
| AAGAAACCAAAACCAGAGAA+CGG | + | chr7.3:3788172-3788191 | MS.gene072491:CDS | 35.0% | |
| CCAGGACAAGTTTCATTTAT+GGG | + | chr7.3:3788625-3788644 | MS.gene072491:CDS | 35.0% | |
| CCATAAATGAAACTTGTCCT+GGG | - | chr7.3:3788627-3788646 | None:intergenic | 35.0% | |
| GAAAAAAGTTACAATCGCCA+TGG | + | chr7.3:3788438-3788457 | MS.gene072491:CDS | 35.0% | |
| GGAATGGAATTTACTATCAG+GGG | + | chr7.3:3788494-3788513 | MS.gene072491:CDS | 35.0% | |
| TGATTTACCTTGCACATAAG+AGG | - | chr7.3:3787730-3787749 | None:intergenic | 35.0% | |
| TGCGTATAAGCGTATGAATA+CGG | - | chr7.3:3788802-3788821 | None:intergenic | 35.0% | |
| !!! | GTAACTTTTTTCTCTGCAAC+CGG | - | chr7.3:3788430-3788449 | None:intergenic | 35.0% |
| ACAGATCAGAAACAGAGTGA+CGG | + | chr7.3:3788202-3788221 | MS.gene072491:CDS | 40.0% | |
| AGAATCAGATGCATGGTCAT+GGG | + | chr7.3:3788581-3788600 | MS.gene072491:CDS | 40.0% | |
| AGAGTCTCCATTCATTGTCA+AGG | + | chr7.3:3787845-3787864 | MS.gene072491:CDS | 40.0% | |
| ATTTACTATCAGGGGCAAAG+AGG | + | chr7.3:3788502-3788521 | MS.gene072491:CDS | 40.0% | |
| CAACGAAAACGAAGCTGTTA+AGG | + | chr7.3:3788261-3788280 | MS.gene072491:CDS | 40.0% | |
| CACATAACTGAGCAAGCATT+AGG | - | chr7.3:3788922-3788941 | None:intergenic | 40.0% | |
| CATGCAACCTTGACAATGAA+TGG | - | chr7.3:3787855-3787874 | None:intergenic | 40.0% | |
| CCCAGGACAAGTTTCATTTA+TGG | + | chr7.3:3788624-3788643 | MS.gene072491:CDS | 40.0% | |
| CCCATAAATGAAACTTGTCC+TGG | - | chr7.3:3788628-3788647 | None:intergenic | 40.0% | |
| CTGATTCTGATTCCAATCAC+CGG | - | chr7.3:3788569-3788588 | None:intergenic | 40.0% | |
| GTTATTAAAACGGCATGCAG+AGG | - | chr7.3:3787767-3787786 | None:intergenic | 40.0% | |
| TGGAATCAGAATCAGATGCA+TGG | + | chr7.3:3788574-3788593 | MS.gene072491:CDS | 40.0% | |
| TTTACTATCAGGGGCAAAGA+GGG | + | chr7.3:3788503-3788522 | MS.gene072491:CDS | 40.0% | |
| ! | CATGTTATGAGTTTTCCAGC+CGG | + | chr7.3:3788394-3788413 | MS.gene072491:CDS | 40.0% |
| !! | TTTTGACCGTTCTCTGGTTT+TGG | - | chr7.3:3788181-3788200 | None:intergenic | 40.0% |
| AAATTGTACACCGCCTCTTC+CGG | - | chr7.3:3788350-3788369 | None:intergenic | 45.0% | |
| CAGAATCAGATGCATGGTCA+TGG | + | chr7.3:3788580-3788599 | MS.gene072491:CDS | 45.0% | |
| CCATAACTCAGCTCGTTTAC+CGG | - | chr7.3:3788104-3788123 | None:intergenic | 45.0% | |
| CTCATAACATGTCTCACCTC+TGG | - | chr7.3:3788385-3788404 | None:intergenic | 45.0% | |
| GCACCGTATCTCATAGAAGT+AGG | - | chr7.3:3788754-3788773 | None:intergenic | 45.0% | |
| GCTACAACCTCTTATGTGCA+AGG | + | chr7.3:3787720-3787739 | MS.gene072491:CDS | 45.0% | |
| GGTTGTAGCTGTTGTTCTTC+TGG | - | chr7.3:3787709-3787728 | None:intergenic | 45.0% | |
| TAAACGACGGTGGATACAGA+AGG | + | chr7.3:3788473-3788492 | MS.gene072491:CDS | 45.0% | |
| TACAATCGCCATGGAGAATG+CGG | + | chr7.3:3788447-3788466 | MS.gene072491:CDS | 45.0% | |
| TGTAGCTGTTGTTCTTCTGG+CGG | - | chr7.3:3787706-3787725 | None:intergenic | 45.0% | |
| TTCTGATTCCAATCACCGGA+AGG | - | chr7.3:3788565-3788584 | None:intergenic | 45.0% | |
| ! | TTCGTTTTCGTTGCCACCAT+CGG | - | chr7.3:3788254-3788273 | None:intergenic | 45.0% |
| ! | TTTTCTCTGCAACCGGTAAC+TGG | - | chr7.3:3788423-3788442 | None:intergenic | 45.0% |
| !! | AATCAGTGTATCGGTGTCGA+CGG | - | chr7.3:3788065-3788084 | None:intergenic | 45.0% |
| !!! | TCTGTGTTTTGACCGTTCTC+TGG | - | chr7.3:3788187-3788206 | None:intergenic | 45.0% |
| AAGTTTCCACCACACACCGT+AGG | - | chr7.3:3788718-3788737 | None:intergenic | 50.0% | |
| AATTGTACACCGCCTCTTCC+GGG | - | chr7.3:3788349-3788368 | None:intergenic | 50.0% | |
| ACAATCGCCATGGAGAATGC+GGG | + | chr7.3:3788448-3788467 | MS.gene072491:CDS | 50.0% | |
| ACTTTCGAACCTCCTCCTTC+CGG | + | chr7.3:3788547-3788566 | MS.gene072491:CDS | 50.0% | |
| ATGCATGGTCATGGGCCTTA+TGG | + | chr7.3:3788589-3788608 | MS.gene072491:CDS | 50.0% | |
| CACCTAATGAGAGTCCACCA+CGG | + | chr7.3:3788653-3788672 | MS.gene072491:CDS | 50.0% | |
| CCGGTAAACGAGCTGAGTTA+TGG | + | chr7.3:3788101-3788120 | MS.gene072491:CDS | 50.0% | |
| GACGGAGAAAGCAGTGATGA+AGG | + | chr7.3:3788220-3788239 | MS.gene072491:CDS | 50.0% | |
| GACGGTGGATACAGAAGGAA+TGG | + | chr7.3:3788478-3788497 | MS.gene072491:CDS | 50.0% | |
| GAGAATGCGGGGTTAAACGA+CGG | + | chr7.3:3788460-3788479 | MS.gene072491:CDS | 50.0% | |
| GATGAAGGTAACCAGACCGA+TGG | + | chr7.3:3788235-3788254 | MS.gene072491:CDS | 50.0% | |
| GGGCAAAGAGGGAATAGTGA+AGG | + | chr7.3:3788514-3788533 | MS.gene072491:CDS | 50.0% | |
| GTGGACTCTCATTAGGTGGT+GGG | - | chr7.3:3788651-3788670 | None:intergenic | 50.0% | |
| GTTTAACCCCGCATTCTCCA+TGG | - | chr7.3:3788458-3788477 | None:intergenic | 50.0% | |
| TGATTCCAATCACCGGAAGG+AGG | - | chr7.3:3788562-3788581 | None:intergenic | 50.0% | |
| ! | GCTGGTGCGTGATGATAATG+CGG | - | chr7.3:3788691-3788710 | None:intergenic | 50.0% |
| ! | GTGCGTGATGATAATGCGGT+GGG | - | chr7.3:3788687-3788706 | None:intergenic | 50.0% |
| ! | GTTGTTGTTGCTGCTACCGA+AGG | + | chr7.3:3788283-3788302 | MS.gene072491:CDS | 50.0% |
| ! | TGCATGGTCATGGGCCTTAT+GGG | + | chr7.3:3788590-3788609 | MS.gene072491:CDS | 50.0% |
| !! | TTCCGTGGTGGACTCTCATT+AGG | - | chr7.3:3788658-3788677 | None:intergenic | 50.0% |
| AACCTCCTCCTTCCGGTGAT+TGG | + | chr7.3:3788554-3788573 | MS.gene072491:CDS | 55.0% | |
| AATGCGGGGTTAAACGACGG+TGG | + | chr7.3:3788463-3788482 | MS.gene072491:CDS | 55.0% | |
| AGCTGTTGTTCTTCTGGCGG+TGG | - | chr7.3:3787703-3787722 | None:intergenic | 55.0% | |
| CAATCGCCATGGAGAATGCG+GGG | + | chr7.3:3788449-3788468 | MS.gene072491:CDS | 55.0% | |
| GAAGGTAACCAGACCGATGG+TGG | + | chr7.3:3788238-3788257 | MS.gene072491:CDS | 55.0% | |
| GTTGTTGCTGCTACCGAAGG+TGG | + | chr7.3:3788286-3788305 | MS.gene072491:CDS | 55.0% | |
| TCACGCACCAGCTTCTCCTA+CGG | + | chr7.3:3788699-3788718 | MS.gene072491:CDS | 55.0% | |
| TGCAACCGGTAACTGGCTAC+CGG | - | chr7.3:3788416-3788435 | None:intergenic | 55.0% | |
| TGTTGTTCTTCTGGCGGTGG+CGG | - | chr7.3:3787700-3787719 | None:intergenic | 55.0% | |
| TTCCAATCACCGGAAGGAGG+AGG | - | chr7.3:3788559-3788578 | None:intergenic | 55.0% | |
| TTTCGTTGCCACCATCGGTC+TGG | - | chr7.3:3788249-3788268 | None:intergenic | 55.0% | |
| ! | GGTGCGTGATGATAATGCGG+TGG | - | chr7.3:3788688-3788707 | None:intergenic | 55.0% |
| ! | GGTGGACTCTCATTAGGTGG+TGG | - | chr7.3:3788652-3788671 | None:intergenic | 55.0% |
| !! | CGTGGTGGACTCTCATTAGG+TGG | - | chr7.3:3788655-3788674 | None:intergenic | 55.0% |
| !! | GGTGGGTATTGATTCCGTGG+TGG | - | chr7.3:3788670-3788689 | None:intergenic | 55.0% |
| !! | TGCGGTGGGTATTGATTCCG+TGG | - | chr7.3:3788673-3788692 | None:intergenic | 55.0% |
| ACCACCACCACCACCACCTT+CGG | - | chr7.3:3788302-3788321 | None:intergenic | 60.0% | |
| CCACACACCGTAGGAGAAGC+TGG | - | chr7.3:3788709-3788728 | None:intergenic | 60.0% | |
| CCAGCTTCTCCTACGGTGTG+TGG | + | chr7.3:3788706-3788725 | MS.gene072491:CDS | 60.0% | |
| GCTTCTCCTACGGTGTGTGG+TGG | + | chr7.3:3788709-3788728 | MS.gene072491:CDS | 60.0% | |
| GTTGCTGCTACCGAAGGTGG+TGG | + | chr7.3:3788289-3788308 | MS.gene072491:CDS | 60.0% | |
| TCCAGCCGGTAGCCAGTTAC+CGG | + | chr7.3:3788408-3788427 | MS.gene072491:CDS | 60.0% | |
| ! | GTCATGGGCCTTATGGGCCT+GGG | + | chr7.3:3788596-3788615 | MS.gene072491:CDS | 60.0% |
| !! | TGGTGGTGGTGGTGGTGGAA+GGG | + | chr7.3:3788309-3788328 | MS.gene072491:CDS | 60.0% |
| ACCGGTAACTGGCTACCGGC+TGG | - | chr7.3:3788412-3788431 | None:intergenic | 65.0% | |
| ACTTGTCCTGGGCCAGACCC+AGG | - | chr7.3:3788616-3788635 | None:intergenic | 65.0% | |
| TGTACACCGCCTCTTCCGGG+TGG | - | chr7.3:3788346-3788365 | None:intergenic | 65.0% | |
| ! | GCTGCTACCGAAGGTGGTGG+TGG | + | chr7.3:3788292-3788311 | MS.gene072491:CDS | 65.0% |
| ! | GGTCATGGGCCTTATGGGCC+TGG | + | chr7.3:3788595-3788614 | MS.gene072491:CDS | 65.0% |
| ! | TGTTCTTCTGGCGGTGGCGG+TGG | - | chr7.3:3787697-3787716 | None:intergenic | 65.0% |
| !! | ACCGAAGGTGGTGGTGGTGG+TGG | + | chr7.3:3788298-3788317 | MS.gene072491:CDS | 65.0% |
| !! | GAAGGTGGTGGTGGTGGTGG+TGG | + | chr7.3:3788301-3788320 | MS.gene072491:CDS | 65.0% |
| !! | GCTACCGAAGGTGGTGGTGG+TGG | + | chr7.3:3788295-3788314 | MS.gene072491:CDS | 65.0% |
| !! | GGTGGTGGTGGTGGTGGAAG+GGG | + | chr7.3:3788310-3788329 | MS.gene072491:CDS | 65.0% |
| !! | GTGGTGGAAGGGGTGGTGGA+TGG | + | chr7.3:3788320-3788339 | MS.gene072491:CDS | 65.0% |
| !! | GTGGTGGTGGTGGTGGTGGA+AGG | + | chr7.3:3788308-3788327 | MS.gene072491:CDS | 65.0% |
| GGATGGCCACCCGGAAGAGG+CGG | + | chr7.3:3788337-3788356 | MS.gene072491:CDS | 70.0% | |
| GGGCCAGACCCAGGCCCATA+AGG | - | chr7.3:3788607-3788626 | None:intergenic | 70.0% | |
| GGTGGATGGCCACCCGGAAG+AGG | + | chr7.3:3788334-3788353 | MS.gene072491:CDS | 70.0% | |
| TATGGGCCTGGGTCTGGCCC+AGG | + | chr7.3:3788607-3788626 | MS.gene072491:CDS | 70.0% | |
| ! | GGGCCTTATGGGCCTGGGTC+TGG | + | chr7.3:3788601-3788620 | MS.gene072491:CDS | 70.0% |
| ! | TCTTCTGGCGGTGGCGGTGG+CGG | - | chr7.3:3787694-3787713 | None:intergenic | 70.0% |
| !! | AGGGGTGGTGGATGGCCACC+CGG | + | chr7.3:3788328-3788347 | MS.gene072491:CDS | 70.0% |
| !! | GGTGGTGGTGGAAGGGGTGG+TGG | + | chr7.3:3788316-3788335 | MS.gene072491:CDS | 70.0% |
| !! | GGTGGTGGTGGTGGAAGGGG+TGG | + | chr7.3:3788313-3788332 | MS.gene072491:CDS | 70.0% |
| !! | GGTGGTGGTGGTGGTGGTGG+TGG | + | chr7.3:3788304-3788323 | MS.gene072491:CDS | 70.0% |
| !! | TCTGGCGGTGGCGGTGGCGG+TGG | - | chr7.3:3787691-3787710 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 3787670 | 3788942 | 3787670 | ID=MS.gene072491 |
| chr7.3 | mRNA | 3787670 | 3788942 | 3787670 | ID=MS.gene072491.t1;Parent=MS.gene072491 |
| chr7.3 | exon | 3787670 | 3787741 | 3787670 | ID=MS.gene072491.t1.exon1;Parent=MS.gene072491.t1 |
| chr7.3 | CDS | 3787670 | 3787741 | 3787670 | ID=cds.MS.gene072491.t1;Parent=MS.gene072491.t1 |
| chr7.3 | exon | 3787833 | 3787908 | 3787833 | ID=MS.gene072491.t1.exon2;Parent=MS.gene072491.t1 |
| chr7.3 | CDS | 3787833 | 3787908 | 3787833 | ID=cds.MS.gene072491.t1;Parent=MS.gene072491.t1 |
| chr7.3 | exon | 3788008 | 3788942 | 3788008 | ID=MS.gene072491.t1.exon3;Parent=MS.gene072491.t1 |
| chr7.3 | CDS | 3788008 | 3788942 | 3788008 | ID=cds.MS.gene072491.t1;Parent=MS.gene072491.t1 |
| Gene Sequence |
| Protein sequence |
