Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072598.t1 | AES82362.2 | 98.2 | 504 | 9 | 0 | 1 | 504 | 8 | 511 | 4.20E-293 | 1016.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072598.t1 | P42211 | 58.7 | 506 | 197 | 4 | 1 | 504 | 1 | 496 | 2.1e-176 | 620.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072598.t1 | G7KWE8 | 98.2 | 504 | 9 | 0 | 1 | 504 | 1 | 504 | 3.0e-293 | 1016.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050795 | MS.gene072598 | 0.800705 | 1.27E-48 | -1.69E-46 |
| MS.gene050797 | MS.gene072598 | 0.809367 | 1.96E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072598.t1 | MTR_7g111530 | 98.214 | 504 | 9 | 0 | 1 | 504 | 8 | 511 | 0.0 | 1029 |
| MS.gene072598.t1 | MTR_7g111530 | 98.214 | 504 | 9 | 0 | 1 | 504 | 1 | 504 | 0.0 | 1029 |
| MS.gene072598.t1 | MTR_7g111530 | 97.987 | 447 | 9 | 0 | 1 | 447 | 1 | 447 | 0.0 | 909 |
| MS.gene072598.t1 | MTR_1g484940 | 77.603 | 509 | 108 | 2 | 1 | 504 | 1 | 508 | 0.0 | 840 |
| MS.gene072598.t1 | MTR_4g123563 | 53.984 | 502 | 220 | 3 | 5 | 504 | 5 | 497 | 0.0 | 593 |
| MS.gene072598.t1 | MTR_4g132420 | 55.385 | 520 | 215 | 5 | 1 | 504 | 1 | 519 | 0.0 | 576 |
| MS.gene072598.t1 | MTR_2g023910 | 57.031 | 512 | 210 | 4 | 1 | 504 | 1 | 510 | 0.0 | 573 |
| MS.gene072598.t1 | MTR_2g045420 | 53.438 | 509 | 230 | 4 | 1 | 504 | 1 | 507 | 0.0 | 566 |
| MS.gene072598.t1 | MTR_2g045420 | 50.746 | 536 | 230 | 5 | 1 | 504 | 1 | 534 | 0.0 | 552 |
| MS.gene072598.t1 | MTR_2g045420 | 50.841 | 535 | 230 | 5 | 1 | 504 | 1 | 533 | 0.0 | 552 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072598.t1 | AT1G11910 | 60.159 | 502 | 190 | 5 | 6 | 504 | 12 | 506 | 0.0 | 618 |
| MS.gene072598.t1 | AT1G11910 | 60.159 | 502 | 190 | 5 | 6 | 504 | 23 | 517 | 0.0 | 617 |
| MS.gene072598.t1 | AT1G62290 | 56.920 | 513 | 210 | 5 | 1 | 503 | 1 | 512 | 0.0 | 598 |
| MS.gene072598.t1 | AT1G62290 | 56.920 | 513 | 210 | 5 | 1 | 503 | 1 | 512 | 0.0 | 598 |
| MS.gene072598.t1 | AT4G04460 | 53.082 | 503 | 230 | 3 | 6 | 504 | 8 | 508 | 0.0 | 562 |
| MS.gene072598.t1 | AT4G04460 | 52.883 | 503 | 227 | 4 | 6 | 504 | 8 | 504 | 0.0 | 555 |
| MS.gene072598.t1 | AT1G62290 | 55.441 | 487 | 206 | 5 | 1 | 477 | 1 | 486 | 0.0 | 553 |
| MS.gene072598.t1 | AT1G62290 | 55.142 | 457 | 194 | 5 | 1 | 447 | 1 | 456 | 5.34e-178 | 508 |
| MS.gene072598.t1 | AT1G62290 | 55.142 | 457 | 194 | 5 | 1 | 447 | 1 | 456 | 5.34e-178 | 508 |
| MS.gene072598.t1 | AT1G62290 | 55.024 | 418 | 177 | 5 | 1 | 408 | 1 | 417 | 1.50e-158 | 457 |
| MS.gene072598.t1 | AT4G22050 | 41.111 | 270 | 150 | 7 | 44 | 309 | 10 | 274 | 9.14e-54 | 185 |
| MS.gene072598.t1 | AT4G22050 | 41.860 | 86 | 39 | 3 | 422 | 504 | 276 | 353 | 1.45e-11 | 66.2 |
| MS.gene072598.t1 | AT1G69100 | 39.689 | 257 | 138 | 9 | 73 | 318 | 47 | 297 | 1.80e-49 | 174 |
| MS.gene072598.t1 | AT1G69100 | 39.689 | 257 | 138 | 9 | 73 | 318 | 39 | 289 | 2.32e-49 | 174 |
Find 0 sgRNAs with CRISPR-Local
Find 226 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATTTCAAATGTTATTTTT+AGG | + | 50592:15255-15274 | MS.gene072598:intron | 10.0% |
| !! | TAGGATATTAATTAGTAAAA+TGG | - | 50592:16721-16740 | None:intergenic | 15.0% |
| !! | ACAAATTACAATTCTATTTC+TGG | + | 50592:15947-15966 | MS.gene072598:intron | 20.0% |
| !! | ATCATGTATACTTAATACAT+TGG | - | 50592:15229-15248 | None:intergenic | 20.0% |
| !! | GTAACTAAACTTACATTAAA+TGG | - | 50592:14270-14289 | None:intergenic | 20.0% |
| !! | TATACAACAAATAAACATAG+AGG | - | 50592:15196-15215 | None:intergenic | 20.0% |
| !! | TATGTAAAAATTGCAAACAA+TGG | - | 50592:15757-15776 | None:intergenic | 20.0% |
| !!! | ATTTTTCAAAACATAGTGAA+TGG | - | 50592:15142-15161 | None:intergenic | 20.0% |
| !!! | GAGGATATATTTTGAAATAA+GGG | + | 50592:15068-15087 | MS.gene072598:intron | 20.0% |
| !!! | GTTTTATATTTCACTTTGAA+CGG | + | 50592:16167-16186 | MS.gene072598:intron | 20.0% |
| !!! | TAAATCTTTTTTCAGGTAAA+TGG | - | 50592:14942-14961 | None:intergenic | 20.0% |
| !!! | TACAGGTTGATAATTTTTTT+TGG | - | 50592:16607-16626 | None:intergenic | 20.0% |
| !!! | TGAGGATATATTTTGAAATA+AGG | + | 50592:15067-15086 | MS.gene072598:intron | 20.0% |
| !!! | TTTTCTTTTCAGATTGAAAT+GGG | + | 50592:14971-14990 | MS.gene072598:intron | 20.0% |
| !!! | TTTTTCTTTTCAGATTGAAA+TGG | + | 50592:14970-14989 | MS.gene072598:intron | 20.0% |
| ! | AAATCACTACTATAAACTGT+AGG | + | 50592:14470-14489 | MS.gene072598:intron | 25.0% |
| ! | ACATCTTGTAAAATAAGCTA+TGG | + | 50592:14313-14332 | MS.gene072598:CDS | 25.0% |
| ! | AGTCAAGATAATGTTAAAGT+TGG | + | 50592:14361-14380 | MS.gene072598:CDS | 25.0% |
| ! | CAATCTGAAAAGAAAAACTT+TGG | - | 50592:14967-14986 | None:intergenic | 25.0% |
| ! | CATTAAATGGCACATAAATA+TGG | - | 50592:14257-14276 | None:intergenic | 25.0% |
| ! | TAAGCTGTAATGATATTTCT+AGG | + | 50592:16274-16293 | MS.gene072598:CDS | 25.0% |
| ! | TCCAAGACATATAACAAAAA+CGG | + | 50592:14209-14228 | MS.gene072598:CDS | 25.0% |
| ! | TTAGATATTCAGTTCTGTTT+CGG | - | 50592:16383-16402 | None:intergenic | 25.0% |
| ! | TTATATATGTACCATAGGTT+TGG | - | 50592:14105-14124 | None:intergenic | 25.0% |
| ! | TTGAGGACATATATATCAAA+GGG | - | 50592:16135-16154 | None:intergenic | 25.0% |
| ! | TTTACTGTCATATTTGATAC+CGG | + | 50592:14010-14029 | MS.gene072598:CDS | 25.0% |
| !! | AGAAATTACTTAGACTTTTG+AGG | + | 50592:15049-15068 | MS.gene072598:intron | 25.0% |
| !! | AGTACCTTTGAAGAATTATA+TGG | + | 50592:13940-13959 | MS.gene072598:CDS | 25.0% |
| !! | ATGATGGAACAAAATCTTAT+CGG | + | 50592:14737-14756 | MS.gene072598:CDS | 25.0% |
| !! | TTTCAGGTAAATGGTTTAAT+TGG | - | 50592:14933-14952 | None:intergenic | 25.0% |
| !! | TTTCAGTATATTCTAAGAAC+CGG | + | 50592:16496-16515 | MS.gene072598:intron | 25.0% |
| !! | TTTTGTCAATGAGAAAGTTT+AGG | + | 50592:15862-15881 | MS.gene072598:intron | 25.0% |
| !!! | TAGTATGGATGCTTTTAAAA+TGG | + | 50592:13850-13869 | MS.gene072598:CDS | 25.0% |
| !!! | TTATTTTTAGGTGTTTGTGA+AGG | + | 50592:15267-15286 | MS.gene072598:intron | 25.0% |
| !!! | TTTGGTGTAAATCTTTTTTC+AGG | - | 50592:14949-14968 | None:intergenic | 25.0% |
| AAACTTGAAACATACCATAC+TGG | - | 50592:14600-14619 | None:intergenic | 30.0% | |
| AAGATCAAACTCATTTAGGT+AGG | - | 50592:15632-15651 | None:intergenic | 30.0% | |
| ACTTACAGAAAAGTAACACT+TGG | - | 50592:14062-14081 | None:intergenic | 30.0% | |
| ATGATAGACCAGTAAATTGA+AGG | - | 50592:14700-14719 | None:intergenic | 30.0% | |
| ATTGAGTGCTTGAAAGAATT+TGG | + | 50592:15095-15114 | MS.gene072598:intron | 30.0% | |
| CCAGAATCAACTAAAACAAA+AGG | + | 50592:16069-16088 | MS.gene072598:CDS | 30.0% | |
| CTTGAGGACATATATATCAA+AGG | - | 50592:16136-16155 | None:intergenic | 30.0% | |
| GATCAAGATCAAACTCATTT+AGG | - | 50592:15636-15655 | None:intergenic | 30.0% | |
| GGAAAGTTTGATGGAATATT+TGG | + | 50592:14537-14556 | MS.gene072598:CDS | 30.0% | |
| GGTATCAAATATGACAGTAA+AGG | - | 50592:14011-14030 | None:intergenic | 30.0% | |
| GTTATAGAAGAACATACAGT+TGG | - | 50592:15339-15358 | None:intergenic | 30.0% | |
| TAAACTGTAGGATTTCATTG+AGG | + | 50592:14482-14501 | MS.gene072598:intron | 30.0% | |
| TATATGGACGCTCAATATTT+CGG | + | 50592:13956-13975 | MS.gene072598:CDS | 30.0% | |
| TGTAAAATAAGCTATGGAAC+CGG | + | 50592:14319-14338 | MS.gene072598:CDS | 30.0% | |
| TTCATGTAACTCTTCATTCA+TGG | - | 50592:16677-16696 | None:intergenic | 30.0% | |
| TTGACTTTACTTGGTTGTTA+TGG | + | 50592:15887-15906 | MS.gene072598:intron | 30.0% | |
| TTGTTTCATTGCACATCAAT+TGG | + | 50592:15778-15797 | MS.gene072598:intron | 30.0% | |
| TTTGATGGAATATTTGGACT+TGG | + | 50592:14543-14562 | MS.gene072598:CDS | 30.0% | |
| ! | AGAATTTGGAATTTGGTACA+AGG | + | 50592:15109-15128 | MS.gene072598:intron | 30.0% |
| ! | GCTTGAAAGAATTTGGAATT+TGG | + | 50592:15102-15121 | MS.gene072598:intron | 30.0% |
| ! | GGAGATAAATTAGTTTGATC+AGG | + | 50592:14903-14922 | MS.gene072598:intron | 30.0% |
| ! | TGAGTTTTTCTGTTGATCAT+TGG | + | 50592:16208-16227 | MS.gene072598:intron | 30.0% |
| !! | AAGGAAGTTGTTTCTCAATA+TGG | + | 50592:15483-15502 | MS.gene072598:CDS | 30.0% |
| !! | ACCGTTTTTGTTATATGTCT+TGG | - | 50592:14213-14232 | None:intergenic | 30.0% |
| !! | AGTTTCAACTAGTCTTTGTT+TGG | + | 50592:14615-14634 | MS.gene072598:intron | 30.0% |
| !! | TCAATATGGAGAGTTGATAT+GGG | + | 50592:15497-15516 | MS.gene072598:CDS | 30.0% |
| !!! | CCTTTTGTTTTAGTTGATTC+TGG | - | 50592:16072-16091 | None:intergenic | 30.0% |
| !!! | GAAATGGGAGATTTTTTCAT+TGG | + | 50592:14986-15005 | MS.gene072598:CDS | 30.0% |
| !!! | GTTTTCCTTTGAAATGCTTA+GGG | - | 50592:14841-14860 | None:intergenic | 30.0% |
| !!! | TCTTGGTGATGTTTTTATGA+GGG | + | 50592:16762-16781 | MS.gene072598:CDS | 30.0% |
| !!! | TGTTTTCCTTTGAAATGCTT+AGG | - | 50592:14842-14861 | None:intergenic | 30.0% |
| !!! | TTCTTGGTGATGTTTTTATG+AGG | + | 50592:16761-16780 | MS.gene072598:CDS | 30.0% |
| AAAACTACAACTTGAGCTTG+AGG | - | 50592:16152-16171 | None:intergenic | 35.0% | |
| AAAAGAAAGACTTCCTTCTC+GGG | - | 50592:14511-14530 | None:intergenic | 35.0% | |
| AAATCACAGGTACAACATGA+TGG | + | 50592:14721-14740 | MS.gene072598:intron | 35.0% | |
| AACACAGAACTTCATAGAGA+AGG | - | 50592:15553-15572 | None:intergenic | 35.0% | |
| AACATAGAGGTGAATATGCA+CGG | - | 50592:15183-15202 | None:intergenic | 35.0% | |
| AATATGACAGTAAAGGTCTG+TGG | - | 50592:14004-14023 | None:intergenic | 35.0% | |
| ACAAAATCTTATCGGTGAGA+AGG | + | 50592:14745-14764 | MS.gene072598:CDS | 35.0% | |
| ACCTCTAGATCTTCATAGTA+TGG | + | 50592:13835-13854 | MS.gene072598:CDS | 35.0% | |
| ACTAAAACAAAAGGCAACCA+AGG | + | 50592:16078-16097 | MS.gene072598:CDS | 35.0% | |
| AGGAAAACACACTTATGTTC+CGG | + | 50592:14853-14872 | MS.gene072598:CDS | 35.0% | |
| ATAGTTGAATACTCTCTCCT+TGG | - | 50592:16098-16117 | None:intergenic | 35.0% | |
| ATATGACAGTAAAGGTCTGT+GGG | - | 50592:14003-14022 | None:intergenic | 35.0% | |
| ATCTGACAAGAAGAACACAA+AGG | - | 50592:16034-16053 | None:intergenic | 35.0% | |
| CAAAAGCAATAAACCCACTA+AGG | - | 50592:16543-16562 | None:intergenic | 35.0% | |
| CGCTCTTATATATGTACCAT+AGG | - | 50592:14110-14129 | None:intergenic | 35.0% | |
| CTATACCCATAATTGGTACA+AGG | + | 50592:14178-14197 | MS.gene072598:CDS | 35.0% | |
| CTGGTCTATCATAAAATCAC+AGG | + | 50592:14708-14727 | MS.gene072598:intron | 35.0% | |
| CTTTGCCTTGTACCAATTAT+GGG | - | 50592:14186-14205 | None:intergenic | 35.0% | |
| GAAAAGAAAGACTTCCTTCT+CGG | - | 50592:14512-14531 | None:intergenic | 35.0% | |
| GAAAAGTAACACTTGGATGA+TGG | - | 50592:14055-14074 | None:intergenic | 35.0% | |
| GAAGTAACCAGATATTGATC+CGG | - | 50592:14341-14360 | None:intergenic | 35.0% | |
| GATTGAGATGGTTACTGAAA+AGG | + | 50592:15979-15998 | MS.gene072598:CDS | 35.0% | |
| GCGTCCATATAATTCTTCAA+AGG | - | 50592:13947-13966 | None:intergenic | 35.0% | |
| GCTTCATCTTCAACATAAAC+TGG | + | 50592:14425-14444 | MS.gene072598:intron | 35.0% | |
| GTGAGTGCATATATGATTAC+AGG | - | 50592:16624-16643 | None:intergenic | 35.0% | |
| GTTTAGGTCTTGACTTTACT+TGG | + | 50592:15878-15897 | MS.gene072598:intron | 35.0% | |
| TATCTAAAGATCGAGACTAG+TGG | + | 50592:16430-16449 | MS.gene072598:intron | 35.0% | |
| TATGTTCCGGTTACTGAAAA+AGG | + | 50592:14866-14885 | MS.gene072598:CDS | 35.0% | |
| TATTCAGTTCTGTTTCGGAA+AGG | - | 50592:16378-16397 | None:intergenic | 35.0% | |
| TCCATACTATGAAGATCTAG+AGG | - | 50592:13839-13858 | None:intergenic | 35.0% | |
| TCTTTGCCTTGTACCAATTA+TGG | - | 50592:14187-14206 | None:intergenic | 35.0% | |
| TGGTTGTTATGGAACATTTC+TGG | + | 50592:15898-15917 | MS.gene072598:intron | 35.0% | |
| TTGTCAGATGCTTGTTCTTT+GGG | + | 50592:16045-16064 | MS.gene072598:CDS | 35.0% | |
| ! | AGAAGGAAGTCTTTCTTTTC+TGG | + | 50592:14512-14531 | MS.gene072598:CDS | 35.0% |
| ! | CACAACATGTCACTCTAAAA+TGG | - | 50592:14664-14683 | None:intergenic | 35.0% |
| ! | TATATTCTAAGAACCGGAGA+AGG | + | 50592:16502-16521 | MS.gene072598:CDS | 35.0% |
| ! | TATCACACTGTTTTCGACTA+CGG | + | 50592:16787-16806 | MS.gene072598:CDS | 35.0% |
| !! | CTCAATATGGAGAGTTGATA+TGG | + | 50592:15496-15515 | MS.gene072598:CDS | 35.0% |
| !!! | ATGGGAGATTTTTTCATTGG+AGG | + | 50592:14989-15008 | MS.gene072598:CDS | 35.0% |
| !!! | CAGTAACCTTTTTCAGTAAC+CGG | - | 50592:14875-14894 | None:intergenic | 35.0% |
| !!! | TGTTCTCTTTTTGGCTCAAT+GGG | + | 50592:14768-14787 | MS.gene072598:CDS | 35.0% |
| !!! | TTTTTAGGTGTTTGTGAAGG+TGG | + | 50592:15270-15289 | MS.gene072598:intron | 35.0% |
| AAAAAGGTTACTGGCAGGTT+AGG | + | 50592:14882-14901 | MS.gene072598:intron | 40.0% | |
| AAACAATGGAAGCAGACAGT+AGG | - | 50592:15743-15762 | None:intergenic | 40.0% | |
| AACAATGGAAGCAGACAGTA+GGG | - | 50592:15742-15761 | None:intergenic | 40.0% | |
| AACTCTTGTCTCCAAACCTA+TGG | + | 50592:14091-14110 | MS.gene072598:intron | 40.0% | |
| AATCCTAATGCGAAAAAGGG+TGG | + | 50592:14791-14810 | MS.gene072598:CDS | 40.0% | |
| ACCAATTCTCATCATCCCAA+AGG | - | 50592:13804-13823 | None:intergenic | 40.0% | |
| AGAACTTCATAGAGAAGGCA+GGG | - | 50592:15548-15567 | None:intergenic | 40.0% | |
| AGACCAGTAAATTGAAGGCA+CGG | - | 50592:14695-14714 | None:intergenic | 40.0% | |
| AGAGAACAACAGCTAAGATC+AGG | + | 50592:13875-13894 | MS.gene072598:CDS | 40.0% | |
| ATATGGGATCTCCTAGTATC+AGG | + | 50592:15513-15532 | MS.gene072598:CDS | 40.0% | |
| ATTTAGGTAGGTCCAAAGAG+TGG | - | 50592:15620-15639 | None:intergenic | 40.0% | |
| CACTTTGTTACTCGTTGATC+AGG | + | 50592:14289-14308 | MS.gene072598:intron | 40.0% | |
| CCAAACATTTCCTTCACGAT+CGG | + | 50592:16300-16319 | MS.gene072598:CDS | 40.0% | |
| CGGTTACTGAAAAAGGTTAC+TGG | + | 50592:14873-14892 | MS.gene072598:CDS | 40.0% | |
| CTGACCTATTAGATTGATCC+CGG | - | 50592:15711-15730 | None:intergenic | 40.0% | |
| CTTGTCAGATGCTTGTTCTT+TGG | + | 50592:16044-16063 | MS.gene072598:CDS | 40.0% | |
| GACTTATGTGCAAGCATCAT+TGG | - | 50592:13905-13924 | None:intergenic | 40.0% | |
| GCTGAAATCAACCATGCTAT+TGG | + | 50592:15432-15451 | MS.gene072598:CDS | 40.0% | |
| GGAGAAAGAATATACCAGAG+TGG | - | 50592:16586-16605 | None:intergenic | 40.0% | |
| GGGAATCCTAATGCGAAAAA+GGG | + | 50592:14788-14807 | MS.gene072598:CDS | 40.0% | |
| GTACCAATTATGGGTATAGC+AGG | - | 50592:14177-14196 | None:intergenic | 40.0% | |
| GTTGACCCTAAGCATTTCAA+AGG | + | 50592:14833-14852 | MS.gene072598:CDS | 40.0% | |
| TACTGAAAAAGGTTACTGGC+AGG | + | 50592:14877-14896 | MS.gene072598:CDS | 40.0% | |
| TATGACAGTAAAGGTCTGTG+GGG | - | 50592:14002-14021 | None:intergenic | 40.0% | |
| TATGGAACCGGATCAATATC+TGG | + | 50592:14331-14350 | MS.gene072598:CDS | 40.0% | |
| TATGGGATCTCCTAGTATCA+GGG | + | 50592:15514-15533 | MS.gene072598:CDS | 40.0% | |
| TATTTCGGTGAGATCGCAAT+TGG | + | 50592:13971-13990 | MS.gene072598:CDS | 40.0% | |
| TGAGTTTGATCTTGATCTGC+AGG | + | 50592:15639-15658 | MS.gene072598:intron | 40.0% | |
| TGATCAACTTTAGCCTGTTG+TGG | + | 50592:15410-15429 | MS.gene072598:intron | 40.0% | |
| TGGGAATCCTAATGCGAAAA+AGG | + | 50592:14787-14806 | MS.gene072598:CDS | 40.0% | |
| TTCATTGGAGGTTTGTCAAC+AGG | + | 50592:15001-15020 | MS.gene072598:CDS | 40.0% | |
| TTGAAAGAGCTTTGCCAGTA+TGG | + | 50592:14583-14602 | MS.gene072598:CDS | 40.0% | |
| TTGCCTGCTATACCCATAAT+TGG | + | 50592:14171-14190 | MS.gene072598:CDS | 40.0% | |
| TTTCCGTGCCTTCAATTTAC+TGG | + | 50592:14689-14708 | MS.gene072598:intron | 40.0% | |
| TTTGATGTTCCTCCTCCAAA+GGG | + | 50592:16559-16578 | MS.gene072598:CDS | 40.0% | |
| ! | TTTCTGGCAGGAAAGTTTGA+TGG | + | 50592:14528-14547 | MS.gene072598:CDS | 40.0% |
| ! | TTTTGATGTTCCTCCTCCAA+AGG | + | 50592:16558-16577 | MS.gene072598:CDS | 40.0% |
| !! | AATTCTATTTCTGGCAGTGC+TGG | + | 50592:15956-15975 | MS.gene072598:intron | 40.0% |
| !! | ACAGCTTATCACTGATTCAC+CGG | - | 50592:16262-16281 | None:intergenic | 40.0% |
| !! | AGTTCTGAGTGTAGAATGCA+AGG | + | 50592:15464-15483 | MS.gene072598:CDS | 40.0% |
| !! | ATTCTATTTCTGGCAGTGCT+GGG | + | 50592:15957-15976 | MS.gene072598:intron | 40.0% |
| !! | TCCTTTGGGATGATGAGAAT+TGG | + | 50592:13800-13819 | MS.gene072598:CDS | 40.0% |
| !!! | AAGGGTGGTGAATTGGTTTT+TGG | + | 50592:14806-14825 | MS.gene072598:CDS | 40.0% |
| !!! | GTGAGAAGGTGTTCTCTTTT+TGG | + | 50592:14759-14778 | MS.gene072598:CDS | 40.0% |
| !!! | GTGTTCTCTTTTTGGCTCAA+TGG | + | 50592:14767-14786 | MS.gene072598:CDS | 40.0% |
| AAAGGAGAAGGAAGGAAGCA+GGG | - | 50592:13786-13805 | None:intergenic | 45.0% | |
| AACATCACCAAGAATCCTGC+AGG | - | 50592:16755-16774 | None:intergenic | 45.0% | |
| AACCATGCTATTGGAGCTGA+AGG | + | 50592:15441-15460 | MS.gene072598:CDS | 45.0% | |
| AACCCAAAGGTTGGAACTAC+CGG | - | 50592:14032-14051 | None:intergenic | 45.0% | |
| ACCTATTAGATTGATCCCGG+CGG | - | 50592:15708-15727 | None:intergenic | 45.0% | |
| ACTTGTGAACATACGTCACC+AGG | - | 50592:15670-15689 | None:intergenic | 45.0% | |
| ATACCGGTAGTTCCAACCTT+TGG | + | 50592:14026-14045 | MS.gene072598:CDS | 45.0% | |
| ATATACCAGAGTGGACCCTT+TGG | - | 50592:16577-16596 | None:intergenic | 45.0% | |
| ATCATCCCAAAGGAGAAGGA+AGG | - | 50592:13794-13813 | None:intergenic | 45.0% | |
| ATGACAGTAAAGGTCTGTGG+GGG | - | 50592:14001-14020 | None:intergenic | 45.0% | |
| ATGGGATCTCCTAGTATCAG+GGG | + | 50592:15515-15534 | MS.gene072598:CDS | 45.0% | |
| ATTACACAGGTCTGCCTTAG+TGG | + | 50592:16526-16545 | MS.gene072598:CDS | 45.0% | |
| CAAAGAGTGGAAATGCAAGC+GGG | - | 50592:15607-15626 | None:intergenic | 45.0% | |
| CAGAACTTCATAGAGAAGGC+AGG | - | 50592:15549-15568 | None:intergenic | 45.0% | |
| CAGCTTCAGCAAAACCAACT+TGG | - | 50592:16819-16838 | None:intergenic | 45.0% | |
| CAGTTCTGTTGTCAAGCATC+AGG | + | 50592:14384-14403 | MS.gene072598:CDS | 45.0% | |
| CCAAAGAGTGGAAATGCAAG+CGG | - | 50592:15608-15627 | None:intergenic | 45.0% | |
| CCGATCGTGAAGGAAATGTT+TGG | - | 50592:16303-16322 | None:intergenic | 45.0% | |
| CCTATATGCTATATGCCTGC+AGG | + | 50592:16737-16756 | MS.gene072598:intron | 45.0% | |
| CCTGCAGGCATATAGCATAT+AGG | - | 50592:16740-16759 | None:intergenic | 45.0% | |
| CGGGATCAATCTAATAGGTC+AGG | + | 50592:15709-15728 | MS.gene072598:intron | 45.0% | |
| CTATATGCCTGCAGGATTCT+TGG | + | 50592:16745-16764 | MS.gene072598:intron | 45.0% | |
| CTTCAGCAAAACCAACTTGG+AGG | - | 50592:16816-16835 | None:intergenic | 45.0% | |
| CTTGATCTGCAGGTAAAACC+TGG | + | 50592:15649-15668 | MS.gene072598:intron | 45.0% | |
| GAAATGATAACAGGCTGCTG+CGG | - | 50592:15585-15604 | None:intergenic | 45.0% | |
| GGTGACGTATGTTCACAAGT+TGG | + | 50592:15670-15689 | MS.gene072598:CDS | 45.0% | |
| GTTTCGGAAAGGTAGCTAGT+AGG | - | 50592:16367-16386 | None:intergenic | 45.0% | |
| TACCGGTAGTTCCAACCTTT+GGG | + | 50592:14027-14046 | MS.gene072598:CDS | 45.0% | |
| TAGGTAATCCGAACCTGTTC+TGG | - | 50592:16348-16367 | None:intergenic | 45.0% | |
| TCAGGAACATCTTTGCTTGC+TGG | + | 50592:15312-15331 | MS.gene072598:CDS | 45.0% | |
| TCTCATCATCCCAAAGGAGA+AGG | - | 50592:13798-13817 | None:intergenic | 45.0% | |
| TGCAAGCGGGAAATGATAAC+AGG | - | 50592:15594-15613 | None:intergenic | 45.0% | |
| TGCGAAAAAGGGTGGTGAAT+TGG | + | 50592:14799-14818 | MS.gene072598:CDS | 45.0% | |
| TGCTTCCTTCCTTCTCCTTT+GGG | + | 50592:13786-13805 | MS.gene072598:CDS | 45.0% | |
| TGTTGTGGCGTTCTGTTTGT+TGG | + | 50592:13748-13767 | MS.gene072598:CDS | 45.0% | |
| TTACACAGGTCTGCCTTAGT+GGG | + | 50592:16527-16546 | MS.gene072598:CDS | 45.0% | |
| TTGGTTTATGTTCCATCCGC+CGG | + | 50592:15689-15708 | MS.gene072598:CDS | 45.0% | |
| ! | GGGGCAAACACATTTTGTTG+TGG | + | 50592:13733-13752 | MS.gene072598:CDS | 45.0% |
| ! | TGGTTGATTTCAGCCACAAC+AGG | - | 50592:15426-15445 | None:intergenic | 45.0% |
| !! | ACTTGGATGATGGAACCCAA+AGG | - | 50592:14045-14064 | None:intergenic | 45.0% |
| !! | CTTATCACTGATTCACCGGA+TGG | - | 50592:16258-16277 | None:intergenic | 45.0% |
| !! | GGAAGTCTTTCTTTTCTGGC+AGG | + | 50592:14516-14535 | MS.gene072598:CDS | 45.0% |
| !! | TCACCACCCTTTTTCGCATT+AGG | - | 50592:14797-14816 | None:intergenic | 45.0% |
| !!! | GGTGGTGAATTGGTTTTTGG+TGG | + | 50592:14809-14828 | MS.gene072598:CDS | 45.0% |
| ATTAGATTGATCCCGGCGGA+TGG | - | 50592:15704-15723 | None:intergenic | 50.0% | |
| CAAAGGAGAAGGAAGGAAGC+AGG | - | 50592:13787-13806 | None:intergenic | 50.0% | |
| CCGCTTGCATTTCCACTCTT+TGG | + | 50592:15605-15624 | MS.gene072598:intron | 50.0% | |
| CTCCTTCAGCTCCAATAGCA+TGG | - | 50592:15446-15465 | None:intergenic | 50.0% | |
| CTGCTTCCTTCCTTCTCCTT+TGG | + | 50592:13785-13804 | MS.gene072598:CDS | 50.0% | |
| GACCTGTGTAATGCCTTCTC+CGG | - | 50592:16518-16537 | None:intergenic | 50.0% | |
| GACTACGGAAACCTCCAAGT+TGG | + | 50592:16802-16821 | MS.gene072598:CDS | 50.0% | |
| GAGAGTCTTCCAAGTCCATC+CGG | + | 50592:16240-16259 | MS.gene072598:CDS | 50.0% | |
| GGAAGCTTACCCCTGATACT+AGG | - | 50592:15527-15546 | None:intergenic | 50.0% | |
| TCCGCCGGGATCAATCTAAT+AGG | + | 50592:15704-15723 | MS.gene072598:CDS | 50.0% | |
| TCCTCACACCAGAACAGGTT+CGG | + | 50592:16337-16356 | MS.gene072598:intron | 50.0% | |
| TGGTTTATGTTCCATCCGCC+GGG | + | 50592:15690-15709 | MS.gene072598:CDS | 50.0% | |
| TGTTCTGGTGTGAGGACGAA+GGG | - | 50592:16333-16352 | None:intergenic | 50.0% | |
| TTCATTGAGGCTACCCGAGA+AGG | + | 50592:14495-14514 | MS.gene072598:CDS | 50.0% | |
| ! | ACTGATTCACCGGATGGACT+TGG | - | 50592:16252-16271 | None:intergenic | 50.0% |
| ! | AGGTACTGTAGCTTCATCGC+TGG | - | 50592:13927-13946 | None:intergenic | 50.0% |
| ! | GGGTTTGTTTCCGATCGTGA+AGG | - | 50592:16313-16332 | None:intergenic | 50.0% |
| ! | TGTGCTGCTATTGTGGACTC+AGG | + | 50592:15294-15313 | MS.gene072598:CDS | 50.0% |
| !! | AACCGGAGAAGGCATTACAC+AGG | + | 50592:16513-16532 | MS.gene072598:CDS | 50.0% |
| !! | GGATGATGGAACCCAAAGGT+TGG | - | 50592:14041-14060 | None:intergenic | 50.0% |
| CTGTTCTGGTGTGAGGACGA+AGG | - | 50592:16334-16353 | None:intergenic | 55.0% | |
| CTTCGTCCTCACACCAGAAC+AGG | + | 50592:16332-16351 | MS.gene072598:CDS | 55.0% | |
| TACCAGAGTGGACCCTTTGG+AGG | - | 50592:16574-16593 | None:intergenic | 55.0% | |
| TCCGAACCTGTTCTGGTGTG+AGG | - | 50592:16341-16360 | None:intergenic | 55.0% | |
| ! | AGGTGGCTGTGCTGCTATTG+TGG | + | 50592:15287-15306 | MS.gene072598:CDS | 55.0% |
| ! | TGGCAGTGCTGGGATTGAGA+TGG | + | 50592:15967-15986 | MS.gene072598:intron | 55.0% |
| CTCCTCCAAAGGGTCCACTC+TGG | + | 50592:16569-16588 | MS.gene072598:CDS | 60.0% | |
| ! | CAGAGTGGACCCTTTGGAGG+AGG | - | 50592:16571-16590 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 50592 | gene | 13731 | 16843 | 13731 | ID=MS.gene072598 |
| 50592 | mRNA | 13731 | 16843 | 13731 | ID=MS.gene072598.t1;Parent=MS.gene072598 |
| 50592 | exon | 13731 | 14075 | 13731 | ID=MS.gene072598.t1.exon1;Parent=MS.gene072598.t1 |
| 50592 | CDS | 13731 | 14075 | 13731 | ID=cds.MS.gene072598.t1;Parent=MS.gene072598.t1 |
| 50592 | exon | 14170 | 14230 | 14170 | ID=MS.gene072598.t1.exon2;Parent=MS.gene072598.t1 |
| 50592 | CDS | 14170 | 14230 | 14170 | ID=cds.MS.gene072598.t1;Parent=MS.gene072598.t1 |
| 50592 | exon | 14311 | 14405 | 14311 | ID=MS.gene072598.t1.exon3;Parent=MS.gene072598.t1 |
| 50592 | CDS | 14311 | 14405 | 14311 | ID=cds.MS.gene072598.t1;Parent=MS.gene072598.t1 |
| 50592 | exon | 14492 | 14604 | 14492 | ID=MS.gene072598.t1.exon4;Parent=MS.gene072598.t1 |
| 50592 | CDS | 14492 | 14604 | 14492 | ID=cds.MS.gene072598.t1;Parent=MS.gene072598.t1 |
| 50592 | exon | 14730 | 14898 | 14730 | ID=MS.gene072598.t1.exon5;Parent=MS.gene072598.t1 |
| 50592 | CDS | 14730 | 14898 | 14730 | ID=cds.MS.gene072598.t1;Parent=MS.gene072598.t1 |
| 50592 | exon | 14983 | 15022 | 14983 | ID=MS.gene072598.t1.exon6;Parent=MS.gene072598.t1 |
| 50592 | CDS | 14983 | 15022 | 14983 | ID=cds.MS.gene072598.t1;Parent=MS.gene072598.t1 |
| 50592 | exon | 15277 | 15341 | 15277 | ID=MS.gene072598.t1.exon7;Parent=MS.gene072598.t1 |
| 50592 | CDS | 15277 | 15341 | 15277 | ID=cds.MS.gene072598.t1;Parent=MS.gene072598.t1 |
| 50592 | exon | 15423 | 15536 | 15423 | ID=MS.gene072598.t1.exon8;Parent=MS.gene072598.t1 |
| 50592 | CDS | 15423 | 15536 | 15423 | ID=cds.MS.gene072598.t1;Parent=MS.gene072598.t1 |
| 50592 | exon | 15661 | 15725 | 15661 | ID=MS.gene072598.t1.exon9;Parent=MS.gene072598.t1 |
| 50592 | CDS | 15661 | 15725 | 15661 | ID=cds.MS.gene072598.t1;Parent=MS.gene072598.t1 |
| 50592 | exon | 15973 | 16126 | 15973 | ID=MS.gene072598.t1.exon10;Parent=MS.gene072598.t1 |
| 50592 | CDS | 15973 | 16126 | 15973 | ID=cds.MS.gene072598.t1;Parent=MS.gene072598.t1 |
| 50592 | exon | 16234 | 16353 | 16234 | ID=MS.gene072598.t1.exon11;Parent=MS.gene072598.t1 |
| 50592 | CDS | 16234 | 16353 | 16234 | ID=cds.MS.gene072598.t1;Parent=MS.gene072598.t1 |
| 50592 | exon | 16502 | 16590 | 16502 | ID=MS.gene072598.t1.exon12;Parent=MS.gene072598.t1 |
| 50592 | CDS | 16502 | 16590 | 16502 | ID=cds.MS.gene072598.t1;Parent=MS.gene072598.t1 |
| 50592 | exon | 16759 | 16843 | 16759 | ID=MS.gene072598.t1.exon13;Parent=MS.gene072598.t1 |
| 50592 | CDS | 16759 | 16843 | 16759 | ID=cds.MS.gene072598.t1;Parent=MS.gene072598.t1 |
| Gene Sequence |
| Protein sequence |
