Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050797.t1 | AES82362.2 | 98.1 | 476 | 9 | 0 | 1 | 476 | 8 | 483 | 3.70E-275 | 956.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050797.t1 | P42211 | 57.9 | 478 | 189 | 4 | 1 | 476 | 1 | 468 | 9.5e-163 | 574.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050797.t1 | G7KWE8 | 98.1 | 476 | 9 | 0 | 1 | 476 | 1 | 476 | 2.7e-275 | 956.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050795 | MS.gene050797 | 0.985732 | 1.73E-164 | -1.69E-46 |
| MS.gene050797 | MS.gene072598 | 0.809367 | 1.96E-50 | -1.69E-46 |
| MS.gene050797 | MS.gene072600 | 0.803375 | 3.59E-49 | -1.69E-46 |
| MS.gene050797 | MS.gene22777 | 0.894801 | 1.75E-75 | -1.69E-46 |
| MS.gene050797 | MS.gene23101 | 0.998957 | 1.73E-283 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050797.t1 | MTR_7g111530 | 98.109 | 476 | 9 | 0 | 1 | 476 | 8 | 483 | 0.0 | 969 |
| MS.gene050797.t1 | MTR_7g111530 | 98.109 | 476 | 9 | 0 | 1 | 476 | 1 | 476 | 0.0 | 969 |
| MS.gene050797.t1 | MTR_7g111530 | 97.987 | 447 | 9 | 0 | 1 | 447 | 1 | 447 | 0.0 | 910 |
| MS.gene050797.t1 | MTR_1g484940 | 76.715 | 481 | 106 | 2 | 1 | 476 | 1 | 480 | 0.0 | 783 |
| MS.gene050797.t1 | MTR_4g123563 | 52.321 | 474 | 215 | 3 | 5 | 476 | 5 | 469 | 0.0 | 541 |
| MS.gene050797.t1 | MTR_4g132420 | 54.268 | 492 | 208 | 5 | 1 | 476 | 1 | 491 | 0.0 | 530 |
| MS.gene050797.t1 | MTR_2g023910 | 55.579 | 484 | 205 | 4 | 1 | 476 | 1 | 482 | 0.0 | 523 |
| MS.gene050797.t1 | MTR_2g045420 | 52.807 | 481 | 220 | 4 | 1 | 476 | 1 | 479 | 0.0 | 519 |
| MS.gene050797.t1 | MTR_2g045420 | 50.000 | 508 | 220 | 5 | 1 | 476 | 1 | 506 | 4.38e-176 | 505 |
| MS.gene050797.t1 | MTR_2g045420 | 50.099 | 507 | 220 | 5 | 1 | 476 | 1 | 505 | 5.62e-176 | 504 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050797.t1 | AT1G11910 | 58.650 | 474 | 186 | 5 | 6 | 476 | 23 | 489 | 0.0 | 566 |
| MS.gene050797.t1 | AT1G11910 | 58.650 | 474 | 186 | 5 | 6 | 476 | 12 | 478 | 0.0 | 566 |
| MS.gene050797.t1 | AT1G62290 | 55.350 | 486 | 206 | 5 | 1 | 476 | 1 | 485 | 0.0 | 550 |
| MS.gene050797.t1 | AT1G62290 | 55.350 | 486 | 206 | 5 | 1 | 476 | 1 | 485 | 0.0 | 549 |
| MS.gene050797.t1 | AT1G62290 | 55.350 | 486 | 206 | 5 | 1 | 476 | 1 | 485 | 0.0 | 549 |
| MS.gene050797.t1 | AT4G04460 | 51.789 | 475 | 223 | 3 | 6 | 476 | 8 | 480 | 0.0 | 516 |
| MS.gene050797.t1 | AT1G62290 | 55.142 | 457 | 194 | 5 | 1 | 447 | 1 | 456 | 1.58e-178 | 508 |
| MS.gene050797.t1 | AT1G62290 | 55.142 | 457 | 194 | 5 | 1 | 447 | 1 | 456 | 1.58e-178 | 508 |
| MS.gene050797.t1 | AT4G04460 | 51.579 | 475 | 220 | 4 | 6 | 476 | 8 | 476 | 3.31e-178 | 509 |
| MS.gene050797.t1 | AT1G62290 | 55.024 | 418 | 177 | 5 | 1 | 408 | 1 | 417 | 3.62e-159 | 457 |
| MS.gene050797.t1 | AT4G22050 | 41.111 | 270 | 150 | 7 | 44 | 309 | 10 | 274 | 4.45e-54 | 185 |
| MS.gene050797.t1 | AT1G69100 | 39.689 | 257 | 138 | 9 | 73 | 318 | 47 | 297 | 1.32e-49 | 174 |
| MS.gene050797.t1 | AT1G69100 | 39.689 | 257 | 138 | 9 | 73 | 318 | 39 | 289 | 1.64e-49 | 173 |
Find 0 sgRNAs with CRISPR-Local
Find 209 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATTTCAAATGTTATTTTT+AGG | + | 50594:9236-9255 | MS.gene050797:intron | 10.0% |
| !! | ACAAATTACAATTCTATTTC+TGG | + | 50594:9928-9947 | MS.gene050797:intron | 20.0% |
| !! | ATCATGTATACTTAATACAT+TGG | - | 50594:9210-9229 | None:intergenic | 20.0% |
| !! | GTAACTAAACTTACATTAAA+TGG | - | 50594:8244-8263 | None:intergenic | 20.0% |
| !! | TATACAACAAATAAACATAG+AGG | - | 50594:9177-9196 | None:intergenic | 20.0% |
| !! | TATGTAAAAATTGCAAACAA+TGG | - | 50594:9738-9757 | None:intergenic | 20.0% |
| !!! | ATTTTTCAAAACATAGTGAA+TGG | - | 50594:9123-9142 | None:intergenic | 20.0% |
| !!! | GAGGATATATTTTGAAATAA+GGG | + | 50594:9042-9061 | MS.gene050797:intron | 20.0% |
| !!! | GTTTTATATTTCACTTTGAA+CGG | + | 50594:10148-10167 | MS.gene050797:intron | 20.0% |
| !!! | TAAATCTTTTTTCAGGTAAA+TGG | - | 50594:8916-8935 | None:intergenic | 20.0% |
| !!! | TGAGGATATATTTTGAAATA+AGG | + | 50594:9041-9060 | MS.gene050797:intron | 20.0% |
| !!! | TTTTCTTTTCAGATTGAAAT+GGG | + | 50594:8945-8964 | MS.gene050797:intron | 20.0% |
| !!! | TTTTTCTTTTCAGATTGAAA+TGG | + | 50594:8944-8963 | MS.gene050797:intron | 20.0% |
| ! | AAATCACTACTATAAACTGT+AGG | + | 50594:8444-8463 | MS.gene050797:intron | 25.0% |
| ! | ACATCTTGTAAAATAAGCTA+TGG | + | 50594:8287-8306 | MS.gene050797:CDS | 25.0% |
| ! | AGTCAAGATAATGTTAAAGT+TGG | + | 50594:8335-8354 | MS.gene050797:CDS | 25.0% |
| ! | CAATCTGAAAAGAAAAACTT+TGG | - | 50594:8941-8960 | None:intergenic | 25.0% |
| ! | CATTAAATGGCACATAAATA+TGG | - | 50594:8231-8250 | None:intergenic | 25.0% |
| ! | TAAGCTGTAATGATATTTCT+AGG | + | 50594:10255-10274 | MS.gene050797:CDS | 25.0% |
| ! | TCCAAGACATATAACAAAAA+CGG | + | 50594:8183-8202 | MS.gene050797:CDS | 25.0% |
| ! | TTAGATATTCAGTTCTGTTT+CGG | - | 50594:10364-10383 | None:intergenic | 25.0% |
| ! | TTATATATGTACCATAGGTT+TGG | - | 50594:8079-8098 | None:intergenic | 25.0% |
| ! | TTGAGGACATATATATCAAA+GGG | - | 50594:10116-10135 | None:intergenic | 25.0% |
| ! | TTTACTGTCATATTTGATAC+CGG | + | 50594:7984-8003 | MS.gene050797:CDS | 25.0% |
| !! | AGAAATTACTTAGACTTTTG+AGG | + | 50594:9023-9042 | MS.gene050797:intron | 25.0% |
| !! | AGAATTTGGAATTTGGAATT+TGG | + | 50594:9083-9102 | MS.gene050797:intron | 25.0% |
| !! | AGTACCTTTGAAGAATTATA+TGG | + | 50594:7914-7933 | MS.gene050797:CDS | 25.0% |
| !! | ATGATGGAACAAAATCTTAT+CGG | + | 50594:8711-8730 | MS.gene050797:CDS | 25.0% |
| !! | TTTCAGGTAAATGGTTTAAT+TGG | - | 50594:8907-8926 | None:intergenic | 25.0% |
| !! | TTTCAGTATATTCTAAGAAC+CGG | + | 50594:10477-10496 | MS.gene050797:intron | 25.0% |
| !! | TTTTGTCAATGAGAAAGTTT+AGG | + | 50594:9843-9862 | MS.gene050797:intron | 25.0% |
| !!! | TAGTATGGATGCTTTTAAAA+TGG | + | 50594:7824-7843 | MS.gene050797:CDS | 25.0% |
| !!! | TTATTTTTAGGTGTTTGTGA+AGG | + | 50594:9248-9267 | MS.gene050797:intron | 25.0% |
| !!! | TTTGGTGTAAATCTTTTTTC+AGG | - | 50594:8923-8942 | None:intergenic | 25.0% |
| AAACTTGAAACATACCATAC+TGG | - | 50594:8574-8593 | None:intergenic | 30.0% | |
| AAGATCAAACTCATTTAGGT+AGG | - | 50594:9613-9632 | None:intergenic | 30.0% | |
| ACTTACAGAAAAGTAACACT+TGG | - | 50594:8036-8055 | None:intergenic | 30.0% | |
| ATGATAGACCAGTAAATTGA+AGG | - | 50594:8674-8693 | None:intergenic | 30.0% | |
| ATTGAGTGCTTGAAAGAATT+TGG | + | 50594:9069-9088 | MS.gene050797:intron | 30.0% | |
| CCAGAATCAACTAAAACAAA+AGG | + | 50594:10050-10069 | MS.gene050797:CDS | 30.0% | |
| CTTGAGGACATATATATCAA+AGG | - | 50594:10117-10136 | None:intergenic | 30.0% | |
| GATCAAGATCAAACTCATTT+AGG | - | 50594:9617-9636 | None:intergenic | 30.0% | |
| GGAAAGTTTGATGGAATATT+TGG | + | 50594:8511-8530 | MS.gene050797:CDS | 30.0% | |
| GGTATCAAATATGACAGTAA+AGG | - | 50594:7985-8004 | None:intergenic | 30.0% | |
| GTTATAGAAGAACATACAGT+TGG | - | 50594:9320-9339 | None:intergenic | 30.0% | |
| TAAACTGTAGGATTTCATTG+AGG | + | 50594:8456-8475 | MS.gene050797:intron | 30.0% | |
| TATATGGACGCTCAATATTT+CGG | + | 50594:7930-7949 | MS.gene050797:CDS | 30.0% | |
| TGTAAAATAAGCTATGGAAC+CGG | + | 50594:8293-8312 | MS.gene050797:CDS | 30.0% | |
| TTGACTTTACTTGGTTGTTA+TGG | + | 50594:9868-9887 | MS.gene050797:intron | 30.0% | |
| TTGTTTCATTGCACATCAAT+TGG | + | 50594:9759-9778 | MS.gene050797:intron | 30.0% | |
| TTTGATGGAATATTTGGACT+TGG | + | 50594:8517-8536 | MS.gene050797:CDS | 30.0% | |
| ! | GCTTGAAAGAATTTGGAATT+TGG | + | 50594:9076-9095 | MS.gene050797:intron | 30.0% |
| ! | GGAGATAAATTAGTTTGATC+AGG | + | 50594:8877-8896 | MS.gene050797:intron | 30.0% |
| ! | TGAGTTTTTCTGTTGATCAT+TGG | + | 50594:10189-10208 | MS.gene050797:intron | 30.0% |
| !! | AAGGAAGTTGTTTCTCAATA+TGG | + | 50594:9464-9483 | MS.gene050797:CDS | 30.0% |
| !! | ACCGTTTTTGTTATATGTCT+TGG | - | 50594:8187-8206 | None:intergenic | 30.0% |
| !! | AGTTTCAACTAGTCTTTGTT+TGG | + | 50594:8589-8608 | MS.gene050797:intron | 30.0% |
| !! | TCAATATGGAGAGTTGATAT+GGG | + | 50594:9478-9497 | MS.gene050797:CDS | 30.0% |
| !!! | CCTTTTGTTTTAGTTGATTC+TGG | - | 50594:10053-10072 | None:intergenic | 30.0% |
| !!! | GAAATGGGAGATTTTTTCAT+TGG | + | 50594:8960-8979 | MS.gene050797:CDS | 30.0% |
| !!! | GTTTTCCTTTGAAATGCTTA+GGG | - | 50594:8815-8834 | None:intergenic | 30.0% |
| !!! | TGTTTTCCTTTGAAATGCTT+AGG | - | 50594:8816-8835 | None:intergenic | 30.0% |
| AAAACTACAACTTGAGCTTG+AGG | - | 50594:10133-10152 | None:intergenic | 35.0% | |
| AAAAGAAAGACTTCCTTCTC+GGG | - | 50594:8485-8504 | None:intergenic | 35.0% | |
| AAATCACAGGTACAACATGA+TGG | + | 50594:8695-8714 | MS.gene050797:intron | 35.0% | |
| AACACAGAACTTCATAGAGA+AGG | - | 50594:9534-9553 | None:intergenic | 35.0% | |
| AACATAGAGGTGAATATGCA+CGG | - | 50594:9164-9183 | None:intergenic | 35.0% | |
| AATATGACAGTAAAGGTCTG+TGG | - | 50594:7978-7997 | None:intergenic | 35.0% | |
| ACAAAATCTTATCGGTGAGA+AGG | + | 50594:8719-8738 | MS.gene050797:CDS | 35.0% | |
| ACCTCTAGATCTTCATAGTA+TGG | + | 50594:7809-7828 | MS.gene050797:CDS | 35.0% | |
| ACTAAAACAAAAGGCAACCA+AGG | + | 50594:10059-10078 | MS.gene050797:CDS | 35.0% | |
| AGGAAAACACACTTATGTTC+CGG | + | 50594:8827-8846 | MS.gene050797:CDS | 35.0% | |
| ATAGTTGAATACTCTCTCCT+TGG | - | 50594:10079-10098 | None:intergenic | 35.0% | |
| ATATGACAGTAAAGGTCTGT+GGG | - | 50594:7977-7996 | None:intergenic | 35.0% | |
| ATCTGACAAGAAGAACACAA+AGG | - | 50594:10015-10034 | None:intergenic | 35.0% | |
| CAAAAGCAATAAACCCACTA+AGG | - | 50594:10524-10543 | None:intergenic | 35.0% | |
| CCAAACATTTCCTTCACTAT+CGG | + | 50594:10281-10300 | MS.gene050797:CDS | 35.0% | |
| CGCTCTTATATATGTACCAT+AGG | - | 50594:8084-8103 | None:intergenic | 35.0% | |
| CTATACCCATAATTGGTACA+AGG | + | 50594:8152-8171 | MS.gene050797:CDS | 35.0% | |
| CTGGTCTATCATAAAATCAC+AGG | + | 50594:8682-8701 | MS.gene050797:intron | 35.0% | |
| CTTTGCCTTGTACCAATTAT+GGG | - | 50594:8160-8179 | None:intergenic | 35.0% | |
| GAAAAGAAAGACTTCCTTCT+CGG | - | 50594:8486-8505 | None:intergenic | 35.0% | |
| GAAAAGTAACACTTGGATGA+TGG | - | 50594:8029-8048 | None:intergenic | 35.0% | |
| GAAGTAACCAGATATTGATC+CGG | - | 50594:8315-8334 | None:intergenic | 35.0% | |
| GATTGAGATGGTTACTGAAA+AGG | + | 50594:9960-9979 | MS.gene050797:CDS | 35.0% | |
| GCGTCCATATAATTCTTCAA+AGG | - | 50594:7921-7940 | None:intergenic | 35.0% | |
| GCTTCATCTTCAACATAAAC+TGG | + | 50594:8399-8418 | MS.gene050797:intron | 35.0% | |
| GTTTAGGTCTTGACTTTACT+TGG | + | 50594:9859-9878 | MS.gene050797:intron | 35.0% | |
| TATCTAAAGATCGAGACTAG+TGG | + | 50594:10411-10430 | MS.gene050797:intron | 35.0% | |
| TATGTTCCGGTTACTGAAAA+AGG | + | 50594:8840-8859 | MS.gene050797:CDS | 35.0% | |
| TATTCAGTTCTGTTTCGGAA+AGG | - | 50594:10359-10378 | None:intergenic | 35.0% | |
| TCCATACTATGAAGATCTAG+AGG | - | 50594:7813-7832 | None:intergenic | 35.0% | |
| TCTTTGCCTTGTACCAATTA+TGG | - | 50594:8161-8180 | None:intergenic | 35.0% | |
| TGATTAACTTTAGCCTGTTG+TGG | + | 50594:9391-9410 | MS.gene050797:intron | 35.0% | |
| TGGTTGTTATGGAACATTTC+TGG | + | 50594:9879-9898 | MS.gene050797:intron | 35.0% | |
| TTGTCAGATGCTTGTTCTTT+GGG | + | 50594:10026-10045 | MS.gene050797:CDS | 35.0% | |
| TTTCCATGCCTTCAATTTAC+TGG | + | 50594:8663-8682 | MS.gene050797:intron | 35.0% | |
| ! | AGAAGGAAGTCTTTCTTTTC+TGG | + | 50594:8486-8505 | MS.gene050797:CDS | 35.0% |
| ! | CACAACATGTCACTCTAAAA+TGG | - | 50594:8638-8657 | None:intergenic | 35.0% |
| ! | GGAATTTGGAATTTGGTACA+AGG | + | 50594:9090-9109 | MS.gene050797:intron | 35.0% |
| ! | TATATTCTAAGAACCGGAGA+AGG | + | 50594:10483-10502 | MS.gene050797:CDS | 35.0% |
| !! | CTCAATATGGAGAGTTGATA+TGG | + | 50594:9477-9496 | MS.gene050797:CDS | 35.0% |
| !!! | ATGGGAGATTTTTTCATTGG+AGG | + | 50594:8963-8982 | MS.gene050797:CDS | 35.0% |
| !!! | CAGTAACCTTTTTCAGTAAC+CGG | - | 50594:8849-8868 | None:intergenic | 35.0% |
| !!! | TGTTCTCTTTTTGGCTCAAT+GGG | + | 50594:8742-8761 | MS.gene050797:CDS | 35.0% |
| !!! | TTTTTAGGTGTTTGTGAAGG+TGG | + | 50594:9251-9270 | MS.gene050797:intron | 35.0% |
| AAAAAGGTTACTGGCAGGTT+AGG | + | 50594:8856-8875 | MS.gene050797:intron | 40.0% | |
| AAACAATGGAAGCAGACAGT+AGG | - | 50594:9724-9743 | None:intergenic | 40.0% | |
| AACAATGGAAGCAGACAGTA+GGG | - | 50594:9723-9742 | None:intergenic | 40.0% | |
| AACTCTTGTCTCCAAACCTA+TGG | + | 50594:8065-8084 | MS.gene050797:intron | 40.0% | |
| AATCCTAATGCGAAAAAGGG+TGG | + | 50594:8765-8784 | MS.gene050797:CDS | 40.0% | |
| ACCAATTCTCATCATCCCAA+AGG | - | 50594:7778-7797 | None:intergenic | 40.0% | |
| AGAACTTCATAGAGAAGGCA+GGG | - | 50594:9529-9548 | None:intergenic | 40.0% | |
| AGACCAGTAAATTGAAGGCA+TGG | - | 50594:8669-8688 | None:intergenic | 40.0% | |
| AGAGAACAACAGCTAAGATC+AGG | + | 50594:7849-7868 | MS.gene050797:CDS | 40.0% | |
| ATATGGGATCTCCTAGTATC+AGG | + | 50594:9494-9513 | MS.gene050797:CDS | 40.0% | |
| ATTTAGGTAGGTCCAAAGAG+TGG | - | 50594:9601-9620 | None:intergenic | 40.0% | |
| CAAAGAGTGGAAATGCAAAC+GGG | - | 50594:9588-9607 | None:intergenic | 40.0% | |
| CACTTTGTTACTCGTTGATC+AGG | + | 50594:8263-8282 | MS.gene050797:intron | 40.0% | |
| CCAAAGAGTGGAAATGCAAA+CGG | - | 50594:9589-9608 | None:intergenic | 40.0% | |
| CCGATAGTGAAGGAAATGTT+TGG | - | 50594:10284-10303 | None:intergenic | 40.0% | |
| CGGTTACTGAAAAAGGTTAC+TGG | + | 50594:8847-8866 | MS.gene050797:CDS | 40.0% | |
| CTGACCTATTAGATTGATCC+CGG | - | 50594:9692-9711 | None:intergenic | 40.0% | |
| CTTGTCAGATGCTTGTTCTT+TGG | + | 50594:10025-10044 | MS.gene050797:CDS | 40.0% | |
| GACTTATGTGCAAGCATCAT+TGG | - | 50594:7879-7898 | None:intergenic | 40.0% | |
| GCTGAAATCAACCATGCTAT+TGG | + | 50594:9413-9432 | MS.gene050797:CDS | 40.0% | |
| GGGAATCCTAATGCGAAAAA+GGG | + | 50594:8762-8781 | MS.gene050797:CDS | 40.0% | |
| GTACCAATTATGGGTATAGC+AGG | - | 50594:8151-8170 | None:intergenic | 40.0% | |
| GTTGACCCTAAGCATTTCAA+AGG | + | 50594:8807-8826 | MS.gene050797:CDS | 40.0% | |
| TACTGAAAAAGGTTACTGGC+AGG | + | 50594:8851-8870 | MS.gene050797:CDS | 40.0% | |
| TATGACAGTAAAGGTCTGTG+GGG | - | 50594:7976-7995 | None:intergenic | 40.0% | |
| TATGGAACCGGATCAATATC+TGG | + | 50594:8305-8324 | MS.gene050797:CDS | 40.0% | |
| TATGGGATCTCCTAGTATCA+GGG | + | 50594:9495-9514 | MS.gene050797:CDS | 40.0% | |
| TATTTCGGTGAGATCGCAAT+TGG | + | 50594:7945-7964 | MS.gene050797:CDS | 40.0% | |
| TGAGTTTGATCTTGATCTGC+AGG | + | 50594:9620-9639 | MS.gene050797:intron | 40.0% | |
| TGCAAACGGGAAATGATAAC+AGG | - | 50594:9575-9594 | None:intergenic | 40.0% | |
| TGGGAATCCTAATGCGAAAA+AGG | + | 50594:8761-8780 | MS.gene050797:CDS | 40.0% | |
| TTCATTGGAGGTTTGTCAAC+AGG | + | 50594:8975-8994 | MS.gene050797:CDS | 40.0% | |
| TTGAAAGAGCTTTGCCAGTA+TGG | + | 50594:8557-8576 | MS.gene050797:CDS | 40.0% | |
| TTGCCTGCTATACCCATAAT+TGG | + | 50594:8145-8164 | MS.gene050797:CDS | 40.0% | |
| TTTGATGTTCCTCCTCCAAA+GGG | + | 50594:10540-10559 | MS.gene050797:CDS | 40.0% | |
| ! | TTTCTGGCAGGAAAGTTTGA+TGG | + | 50594:8502-8521 | MS.gene050797:CDS | 40.0% |
| ! | TTTTGATGTTCCTCCTCCAA+AGG | + | 50594:10539-10558 | MS.gene050797:CDS | 40.0% |
| !! | AATTCTATTTCTGGCAGTGC+TGG | + | 50594:9937-9956 | MS.gene050797:intron | 40.0% |
| !! | ACAGCTTATCACTGATTCAC+CGG | - | 50594:10243-10262 | None:intergenic | 40.0% |
| !! | AGTTCTGAGTGTAGAATGCA+AGG | + | 50594:9445-9464 | MS.gene050797:CDS | 40.0% |
| !! | ATTCTATTTCTGGCAGTGCT+GGG | + | 50594:9938-9957 | MS.gene050797:intron | 40.0% |
| !! | TCCTTTGGGATGATGAGAAT+TGG | + | 50594:7774-7793 | MS.gene050797:CDS | 40.0% |
| !!! | AAGGGTGGTGAATTGGTTTT+TGG | + | 50594:8780-8799 | MS.gene050797:CDS | 40.0% |
| !!! | GTGAGAAGGTGTTCTCTTTT+TGG | + | 50594:8733-8752 | MS.gene050797:CDS | 40.0% |
| !!! | GTGTTCTCTTTTTGGCTCAA+TGG | + | 50594:8741-8760 | MS.gene050797:CDS | 40.0% |
| AAAGGAGAAGGAAGGAAGCA+GGG | - | 50594:7760-7779 | None:intergenic | 45.0% | |
| AACCATGCTATTGGAGCTGA+AGG | + | 50594:9422-9441 | MS.gene050797:CDS | 45.0% | |
| AACCCAAAGGTTGGAACTAC+CGG | - | 50594:8006-8025 | None:intergenic | 45.0% | |
| ACCTATTAGATTGATCCCGG+CGG | - | 50594:9689-9708 | None:intergenic | 45.0% | |
| ACTTGTGAACATACGTCACC+AGG | - | 50594:9651-9670 | None:intergenic | 45.0% | |
| ATACCGGTAGTTCCAACCTT+TGG | + | 50594:8000-8019 | MS.gene050797:CDS | 45.0% | |
| ATCATCCCAAAGGAGAAGGA+AGG | - | 50594:7768-7787 | None:intergenic | 45.0% | |
| ATGACAGTAAAGGTCTGTGG+GGG | - | 50594:7975-7994 | None:intergenic | 45.0% | |
| ATGGGATCTCCTAGTATCAG+GGG | + | 50594:9496-9515 | MS.gene050797:CDS | 45.0% | |
| ATTACACAGGTCTGCCTTAG+TGG | + | 50594:10507-10526 | MS.gene050797:CDS | 45.0% | |
| CAGAACTTCATAGAGAAGGC+AGG | - | 50594:9530-9549 | None:intergenic | 45.0% | |
| CAGTTCTGTTGTCAAGCATC+AGG | + | 50594:8358-8377 | MS.gene050797:CDS | 45.0% | |
| CCGTTTGCATTTCCACTCTT+TGG | + | 50594:9586-9605 | MS.gene050797:intron | 45.0% | |
| CGGGATCAATCTAATAGGTC+AGG | + | 50594:9690-9709 | MS.gene050797:intron | 45.0% | |
| CTTGATCTGCAGGTAAAACC+TGG | + | 50594:9630-9649 | MS.gene050797:intron | 45.0% | |
| GAAATGATAACAGGCTGCTG+CGG | - | 50594:9566-9585 | None:intergenic | 45.0% | |
| GGTGACGTATGTTCACAAGT+TGG | + | 50594:9651-9670 | MS.gene050797:CDS | 45.0% | |
| GTTTCGGAAAGGTAGCTAGT+AGG | - | 50594:10348-10367 | None:intergenic | 45.0% | |
| TACCGGTAGTTCCAACCTTT+GGG | + | 50594:8001-8020 | MS.gene050797:CDS | 45.0% | |
| TAGGTAATCCGAACCTGTTC+TGG | - | 50594:10329-10348 | None:intergenic | 45.0% | |
| TCAGGAACATCTTTGCTTGC+TGG | + | 50594:9293-9312 | MS.gene050797:CDS | 45.0% | |
| TCTCATCATCCCAAAGGAGA+AGG | - | 50594:7772-7791 | None:intergenic | 45.0% | |
| TGCGAAAAAGGGTGGTGAAT+TGG | + | 50594:8773-8792 | MS.gene050797:CDS | 45.0% | |
| TGCTTCCTTCCTTCTCCTTT+GGG | + | 50594:7760-7779 | MS.gene050797:CDS | 45.0% | |
| TGTTGTGGCGTTCTGTTTGT+TGG | + | 50594:7722-7741 | MS.gene050797:CDS | 45.0% | |
| TTACACAGGTCTGCCTTAGT+GGG | + | 50594:10508-10527 | MS.gene050797:CDS | 45.0% | |
| TTGGTTTATGTTCCATCCGC+CGG | + | 50594:9670-9689 | MS.gene050797:CDS | 45.0% | |
| ! | GGGGCAAACACATTTTGTTG+TGG | + | 50594:7707-7726 | MS.gene050797:CDS | 45.0% |
| ! | GGGTTTGTTTCCGATAGTGA+AGG | - | 50594:10294-10313 | None:intergenic | 45.0% |
| ! | TGGTTGATTTCAGCCACAAC+AGG | - | 50594:9407-9426 | None:intergenic | 45.0% |
| !! | ACTTGGATGATGGAACCCAA+AGG | - | 50594:8019-8038 | None:intergenic | 45.0% |
| !! | CTTATCACTGATTCACCGGA+TGG | - | 50594:10239-10258 | None:intergenic | 45.0% |
| !! | GGAAGTCTTTCTTTTCTGGC+AGG | + | 50594:8490-8509 | MS.gene050797:CDS | 45.0% |
| !! | TCACCACCCTTTTTCGCATT+AGG | - | 50594:8771-8790 | None:intergenic | 45.0% |
| !!! | GGTGGTGAATTGGTTTTTGG+TGG | + | 50594:8783-8802 | MS.gene050797:CDS | 45.0% |
| ATTAGATTGATCCCGGCGGA+TGG | - | 50594:9685-9704 | None:intergenic | 50.0% | |
| CAAAGGAGAAGGAAGGAAGC+AGG | - | 50594:7761-7780 | None:intergenic | 50.0% | |
| CTCCTTCAGCTCCAATAGCA+TGG | - | 50594:9427-9446 | None:intergenic | 50.0% | |
| CTGCTTCCTTCCTTCTCCTT+TGG | + | 50594:7759-7778 | MS.gene050797:CDS | 50.0% | |
| GACCTGTGTAATGCCTTCTC+CGG | - | 50594:10499-10518 | None:intergenic | 50.0% | |
| GAGAGTCTTCCAAGTCCATC+CGG | + | 50594:10221-10240 | MS.gene050797:CDS | 50.0% | |
| GGAAGCTTACCCCTGATACT+AGG | - | 50594:9508-9527 | None:intergenic | 50.0% | |
| TCCGCCGGGATCAATCTAAT+AGG | + | 50594:9685-9704 | MS.gene050797:CDS | 50.0% | |
| TCCTCACACCAGAACAGGTT+CGG | + | 50594:10318-10337 | MS.gene050797:intron | 50.0% | |
| TGGTTTATGTTCCATCCGCC+GGG | + | 50594:9671-9690 | MS.gene050797:CDS | 50.0% | |
| TGTTCTGGTGTGAGGACGAA+GGG | - | 50594:10314-10333 | None:intergenic | 50.0% | |
| TTCATTGAGGCTACCCGAGA+AGG | + | 50594:8469-8488 | MS.gene050797:CDS | 50.0% | |
| ! | ACTGATTCACCGGATGGACT+TGG | - | 50594:10233-10252 | None:intergenic | 50.0% |
| ! | AGGTACTGTAGCTTCATCGC+TGG | - | 50594:7901-7920 | None:intergenic | 50.0% |
| ! | TGTGCTGCTATTGTGGACTC+AGG | + | 50594:9275-9294 | MS.gene050797:CDS | 50.0% |
| !! | AACCGGAGAAGGCATTACAC+AGG | + | 50594:10494-10513 | MS.gene050797:CDS | 50.0% |
| !! | GGATGATGGAACCCAAAGGT+TGG | - | 50594:8015-8034 | None:intergenic | 50.0% |
| CTGTTCTGGTGTGAGGACGA+AGG | - | 50594:10315-10334 | None:intergenic | 55.0% | |
| CTTCGTCCTCACACCAGAAC+AGG | + | 50594:10313-10332 | MS.gene050797:CDS | 55.0% | |
| TCCGAACCTGTTCTGGTGTG+AGG | - | 50594:10322-10341 | None:intergenic | 55.0% | |
| ! | AGGTGGCTGTGCTGCTATTG+TGG | + | 50594:9268-9287 | MS.gene050797:CDS | 55.0% |
| ! | TGGCAGTGCTGGGATTGAGA+TGG | + | 50594:9948-9967 | MS.gene050797:intron | 55.0% |
| ! | CAGAGTGGACCCTTTGGAGG+AGG | - | 50594:10552-10571 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 50594 | gene | 7705 | 10571 | 7705 | ID=MS.gene050797 |
| 50594 | mRNA | 7705 | 10571 | 7705 | ID=MS.gene050797.t1;Parent=MS.gene050797 |
| 50594 | exon | 7705 | 8049 | 7705 | ID=MS.gene050797.t1.exon1;Parent=MS.gene050797.t1 |
| 50594 | CDS | 7705 | 8049 | 7705 | ID=cds.MS.gene050797.t1;Parent=MS.gene050797.t1 |
| 50594 | exon | 8144 | 8204 | 8144 | ID=MS.gene050797.t1.exon2;Parent=MS.gene050797.t1 |
| 50594 | CDS | 8144 | 8204 | 8144 | ID=cds.MS.gene050797.t1;Parent=MS.gene050797.t1 |
| 50594 | exon | 8285 | 8379 | 8285 | ID=MS.gene050797.t1.exon3;Parent=MS.gene050797.t1 |
| 50594 | CDS | 8285 | 8379 | 8285 | ID=cds.MS.gene050797.t1;Parent=MS.gene050797.t1 |
| 50594 | exon | 8466 | 8578 | 8466 | ID=MS.gene050797.t1.exon4;Parent=MS.gene050797.t1 |
| 50594 | CDS | 8466 | 8578 | 8466 | ID=cds.MS.gene050797.t1;Parent=MS.gene050797.t1 |
| 50594 | exon | 8704 | 8872 | 8704 | ID=MS.gene050797.t1.exon5;Parent=MS.gene050797.t1 |
| 50594 | CDS | 8704 | 8872 | 8704 | ID=cds.MS.gene050797.t1;Parent=MS.gene050797.t1 |
| 50594 | exon | 8957 | 8996 | 8957 | ID=MS.gene050797.t1.exon6;Parent=MS.gene050797.t1 |
| 50594 | CDS | 8957 | 8996 | 8957 | ID=cds.MS.gene050797.t1;Parent=MS.gene050797.t1 |
| 50594 | exon | 9258 | 9322 | 9258 | ID=MS.gene050797.t1.exon7;Parent=MS.gene050797.t1 |
| 50594 | CDS | 9258 | 9322 | 9258 | ID=cds.MS.gene050797.t1;Parent=MS.gene050797.t1 |
| 50594 | exon | 9404 | 9517 | 9404 | ID=MS.gene050797.t1.exon8;Parent=MS.gene050797.t1 |
| 50594 | CDS | 9404 | 9517 | 9404 | ID=cds.MS.gene050797.t1;Parent=MS.gene050797.t1 |
| 50594 | exon | 9642 | 9706 | 9642 | ID=MS.gene050797.t1.exon9;Parent=MS.gene050797.t1 |
| 50594 | CDS | 9642 | 9706 | 9642 | ID=cds.MS.gene050797.t1;Parent=MS.gene050797.t1 |
| 50594 | exon | 9954 | 10107 | 9954 | ID=MS.gene050797.t1.exon10;Parent=MS.gene050797.t1 |
| 50594 | CDS | 9954 | 10107 | 9954 | ID=cds.MS.gene050797.t1;Parent=MS.gene050797.t1 |
| 50594 | exon | 10215 | 10334 | 10215 | ID=MS.gene050797.t1.exon11;Parent=MS.gene050797.t1 |
| 50594 | CDS | 10215 | 10334 | 10215 | ID=cds.MS.gene050797.t1;Parent=MS.gene050797.t1 |
| 50594 | exon | 10483 | 10571 | 10483 | ID=MS.gene050797.t1.exon12;Parent=MS.gene050797.t1 |
| 50594 | CDS | 10483 | 10571 | 10483 | ID=cds.MS.gene050797.t1;Parent=MS.gene050797.t1 |
| Gene Sequence |
| Protein sequence |
