Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07260.t1 | XP_024639356.1 | 99.6 | 562 | 2 | 0 | 1 | 562 | 1 | 562 | 0.00E+00 | 1120.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07260.t1 | Q54V77 | 61.2 | 569 | 201 | 7 | 1 | 551 | 1 | 567 | 2.0e-196 | 686.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07260.t1 | G7IDT8 | 99.6 | 562 | 2 | 0 | 1 | 562 | 1 | 562 | 0.0e+00 | 1120.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene008780 | MS.gene07260 | PPI |
| MS.gene93045 | MS.gene07260 | PPI |
| MS.gene07260 | MS.gene056502 | PPI |
| MS.gene07260 | MS.gene95693 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07260.t1 | MTR_1g087440 | 99.644 | 562 | 2 | 0 | 1 | 562 | 1 | 562 | 0.0 | 1154 |
| MS.gene07260.t1 | MTR_1g087440 | 99.571 | 466 | 2 | 0 | 1 | 466 | 1 | 466 | 0.0 | 955 |
| MS.gene07260.t1 | MTR_8g446910 | 71.404 | 570 | 155 | 2 | 1 | 562 | 1 | 570 | 0.0 | 855 |
| MS.gene07260.t1 | MTR_2g062770 | 72.894 | 546 | 148 | 0 | 1 | 546 | 1 | 546 | 0.0 | 841 |
| MS.gene07260.t1 | MTR_8g070540 | 71.196 | 552 | 159 | 0 | 1 | 552 | 1 | 552 | 0.0 | 835 |
| MS.gene07260.t1 | MTR_2g062770 | 71.429 | 497 | 142 | 0 | 50 | 546 | 1 | 497 | 0.0 | 754 |
| MS.gene07260.t1 | MTR_8g070540 | 71.636 | 483 | 137 | 0 | 1 | 483 | 1 | 483 | 0.0 | 728 |
| MS.gene07260.t1 | MTR_8g070540 | 68.211 | 475 | 151 | 0 | 78 | 552 | 1 | 475 | 0.0 | 692 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07260.t1 | AT4G02120 | 83.813 | 556 | 90 | 0 | 1 | 556 | 1 | 556 | 0.0 | 981 |
| MS.gene07260.t1 | AT4G02120 | 80.623 | 578 | 90 | 1 | 1 | 556 | 1 | 578 | 0.0 | 971 |
| MS.gene07260.t1 | AT4G02120 | 79.137 | 556 | 77 | 1 | 1 | 556 | 1 | 517 | 0.0 | 905 |
| MS.gene07260.t1 | AT4G02120 | 86.570 | 484 | 65 | 0 | 1 | 484 | 1 | 484 | 0.0 | 875 |
| MS.gene07260.t1 | AT3G12670 | 73.732 | 552 | 144 | 1 | 1 | 552 | 1 | 551 | 0.0 | 846 |
| MS.gene07260.t1 | AT4G02120 | 86.910 | 466 | 61 | 0 | 1 | 466 | 1 | 466 | 0.0 | 843 |
| MS.gene07260.t1 | AT1G30820 | 70.780 | 551 | 161 | 0 | 1 | 551 | 1 | 551 | 0.0 | 833 |
| MS.gene07260.t1 | AT4G20320 | 70.054 | 551 | 165 | 0 | 1 | 551 | 1 | 551 | 0.0 | 805 |
| MS.gene07260.t1 | AT4G20320 | 70.054 | 551 | 165 | 0 | 1 | 551 | 1 | 551 | 0.0 | 805 |
| MS.gene07260.t1 | AT4G20320 | 70.054 | 551 | 165 | 0 | 1 | 551 | 1 | 551 | 0.0 | 805 |
| MS.gene07260.t1 | AT4G20320 | 70.054 | 551 | 165 | 0 | 1 | 551 | 1 | 551 | 0.0 | 805 |
| MS.gene07260.t1 | AT4G20320 | 70.054 | 551 | 165 | 0 | 1 | 551 | 1 | 551 | 0.0 | 805 |
| MS.gene07260.t1 | AT2G34890 | 65.480 | 562 | 192 | 1 | 1 | 560 | 1 | 562 | 0.0 | 785 |
| MS.gene07260.t1 | AT4G20320 | 68.526 | 502 | 158 | 0 | 50 | 551 | 1 | 502 | 0.0 | 738 |
Find 152 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCATGATGTACCAAATATT+TGG | 0.205073 | 1.3:+61951486 | MS.gene07260:CDS |
| ATTGTTCTCTCTGGCATATT+TGG | 0.242741 | 1.3:-61953796 | None:intergenic |
| TTTATAGGTTGATTTGGATT+TGG | 0.257444 | 1.3:+61948279 | MS.gene07260:intron |
| TTATAGGTTGATTTGGATTT+GGG | 0.261073 | 1.3:+61948280 | MS.gene07260:intron |
| GCAGCTTGTGTCTTGGTTCC+AGG | 0.262807 | 1.3:+61953732 | MS.gene07260:CDS |
| CATGCTGCGGCATGTGCTTC+TGG | 0.277150 | 1.3:-61953136 | None:intergenic |
| GTCTTGGTTCCAGGAGGATT+TGG | 0.288037 | 1.3:+61953741 | MS.gene07260:CDS |
| AGGGGAATATGCCAAATATT+TGG | 0.292011 | 1.3:-61951497 | None:intergenic |
| ATGAAAATTACAACAGGATT+TGG | 0.292322 | 1.3:-61954018 | None:intergenic |
| TTACAACAGGATTTGGTGTT+TGG | 0.292770 | 1.3:-61954011 | None:intergenic |
| AATTGCACGCCTACATAATA+TGG | 0.299023 | 1.3:-61955884 | None:intergenic |
| CTAGTCATAAACAGGGTTCT+AGG | 0.329918 | 1.3:+61954111 | MS.gene07260:intron |
| AGAGACTCACTCTAAGTAAC+AGG | 0.332129 | 1.3:-61951517 | None:intergenic |
| GGGTCTTCATTTCCATCAAC+CGG | 0.349986 | 1.3:-61948696 | None:intergenic |
| GGCGGAGTCGTTAGCGGCCT+CGG | 0.350600 | 1.3:+61947902 | MS.gene07260:CDS |
| AGCCGACACAACACAGTGTC+AGG | 0.360915 | 1.3:+61950301 | MS.gene07260:CDS |
| CCTTACTTGGGGATTTGCTT+GGG | 0.363800 | 1.3:+61953822 | MS.gene07260:CDS |
| CCAGGCCGAGATTTGAATTC+GGG | 0.365733 | 1.3:-61955911 | None:intergenic |
| TACAACAGGATTTGGTGTTT+GGG | 0.372108 | 1.3:-61954010 | None:intergenic |
| TCCTTACTTGGGGATTTGCT+TGG | 0.377880 | 1.3:+61953821 | MS.gene07260:CDS |
| CCCAGGCCGAGATTTGAATT+CGG | 0.381611 | 1.3:-61955912 | None:intergenic |
| CTACACCCAACACTGGTATC+AGG | 0.389842 | 1.3:-61950178 | None:intergenic |
| TACTACTGGGAAAATATATC+AGG | 0.394580 | 1.3:+61948351 | MS.gene07260:CDS |
| ATTGAAACTTTAGAAGAAGC+TGG | 0.397254 | 1.3:+61955600 | MS.gene07260:CDS |
| CGCGGAGGCCGCAGGCTTTG+AGG | 0.401516 | 1.3:-61947958 | None:intergenic |
| ATTCAATGTGCAGCCTCTGC+TGG | 0.411306 | 1.3:+61951312 | MS.gene07260:intron |
| AGAGAACAATGTTCCTTACT+TGG | 0.411823 | 1.3:+61953809 | MS.gene07260:CDS |
| TCACCGATGCAATCAGAAAC+TGG | 0.416127 | 1.3:+61948652 | MS.gene07260:CDS |
| TCAGTCCATTGCCGCAAATC+AGG | 0.416330 | 1.3:-61952312 | None:intergenic |
| TTTGCGGCAATGGACTGATA+TGG | 0.421515 | 1.3:+61952317 | MS.gene07260:CDS |
| GGTCTCATATTGGCAGCAAC+GGG | 0.423607 | 1.3:+61956304 | MS.gene07260:intron |
| AAGGATAATAATATTACTAC+TGG | 0.423934 | 1.3:+61948337 | MS.gene07260:CDS |
| GCTGCAATCCAGTCAATTGA+TGG | 0.432899 | 1.3:-61952978 | None:intergenic |
| CGCGTCACCTCCATCAAAAT+CGG | 0.434250 | 1.3:+61947977 | MS.gene07260:CDS |
| TTCATATTTATCTGTTGTAA+AGG | 0.435122 | 1.3:+61952499 | MS.gene07260:CDS |
| CACCTCCTGATTTGCGGCAA+TGG | 0.440971 | 1.3:+61952307 | MS.gene07260:CDS |
| CTGGGCTAAAATTTGTTGGC+AGG | 0.443903 | 1.3:+61955619 | MS.gene07260:CDS |
| TGCCGTAGAGCCTCAATAAA+CGG | 0.445911 | 1.3:-61948878 | None:intergenic |
| TGACATTGTTCAGGTAAATC+CGG | 0.446706 | 1.3:+61955572 | MS.gene07260:intron |
| GTTGCTGTGATCCCGGTTGA+TGG | 0.447710 | 1.3:+61948684 | MS.gene07260:CDS |
| GATGTTTGTGTGATTGAGCT+TGG | 0.449727 | 1.3:+61948723 | MS.gene07260:CDS |
| GAGGACGACGCCGATGCTGC+TGG | 0.450311 | 1.3:-61947939 | None:intergenic |
| GAGAACAATGTTCCTTACTT+GGG | 0.452256 | 1.3:+61953810 | MS.gene07260:CDS |
| ATTGGCAGCAACGGGGAAGT+TGG | 0.452434 | 1.3:+61956312 | MS.gene07260:CDS |
| ATTGTGCACTGTCATCTTCA+AGG | 0.452441 | 1.3:-61953007 | None:intergenic |
| AATTACCAGGTATGGCAATT+CGG | 0.452917 | 1.3:+61955438 | MS.gene07260:intron |
| ATGAAGTACGTTCTCATCTC+CGG | 0.453080 | 1.3:+61947881 | MS.gene07260:CDS |
| GCAGAGTGCAGCTTGTGTCT+TGG | 0.454760 | 1.3:+61953725 | MS.gene07260:intron |
| GATACCAGTGTTGGGTGTAG+TGG | 0.458939 | 1.3:+61950181 | MS.gene07260:CDS |
| TCTAAAGTTTCAATAACATC+CGG | 0.459751 | 1.3:-61955591 | None:intergenic |
| GTCGTTAGCGGCCTCGGCAA+AGG | 0.462544 | 1.3:+61947908 | MS.gene07260:CDS |
| AAAACTTCTCCATGTTCAAA+AGG | 0.464491 | 1.3:-61948118 | None:intergenic |
| GTCAGGGAACTAAGAGCATT+GGG | 0.465525 | 1.3:+61950318 | MS.gene07260:CDS |
| CCCGAATTCAAATCTCGGCC+TGG | 0.467639 | 1.3:+61955911 | MS.gene07260:CDS |
| ATCACTAGCATTCATGAGAA+TGG | 0.472024 | 1.3:+61956343 | MS.gene07260:CDS |
| GAAGCTGGGCTAAAATTTGT+TGG | 0.472530 | 1.3:+61955615 | MS.gene07260:CDS |
| CATTGAGACCATCAATTGAC+TGG | 0.472847 | 1.3:+61952970 | MS.gene07260:CDS |
| ATACCAGTGTTGGGTGTAGT+GGG | 0.477063 | 1.3:+61950182 | MS.gene07260:CDS |
| GTAAGGAACATTGTTCTCTC+TGG | 0.480928 | 1.3:-61953805 | None:intergenic |
| GGAGGTGACGCGGAGGCCGC+AGG | 0.484019 | 1.3:-61947966 | None:intergenic |
| AACAAAGCAGATGGTCTCCC+AGG | 0.484640 | 1.3:-61955929 | None:intergenic |
| GGCGTCACCGCCAGCAGCAT+CGG | 0.487935 | 1.3:+61947929 | MS.gene07260:CDS |
| TCAATCACACAAACATCAGC+AGG | 0.489125 | 1.3:-61948717 | None:intergenic |
| CTATACTGTAGGTCTCATAT+TGG | 0.496171 | 1.3:+61956294 | MS.gene07260:intron |
| CCTACATAATATGGATGACT+TGG | 0.496534 | 1.3:-61955875 | None:intergenic |
| CCCAAGCAAATCCCCAAGTA+AGG | 0.496781 | 1.3:-61953822 | None:intergenic |
| TACAGCAGCTTAACTTACTT+AGG | 0.505369 | 1.3:+61951648 | MS.gene07260:CDS |
| CCGAATTCAAATCTCGGCCT+GGG | 0.505440 | 1.3:+61955912 | MS.gene07260:CDS |
| TTGAAACTTTAGAAGAAGCT+GGG | 0.507446 | 1.3:+61955601 | MS.gene07260:CDS |
| TGGATGAGACAGAAGTTGTC+AGG | 0.508265 | 1.3:-61950149 | None:intergenic |
| TCCTTGGTACTTTCCAGCAG+AGG | 0.508640 | 1.3:-61951325 | None:intergenic |
| TCTGGCATGAAAATTACAAC+AGG | 0.511552 | 1.3:-61954024 | None:intergenic |
| TGTCAGGGAACTAAGAGCAT+TGG | 0.513673 | 1.3:+61950317 | MS.gene07260:CDS |
| TGCCGTTTATTGAGGCTCTA+CGG | 0.516145 | 1.3:+61948876 | MS.gene07260:CDS |
| TTCTTAGTCTGTGCTTGAGA+AGG | 0.517567 | 1.3:+61948461 | MS.gene07260:intron |
| TTCATCCCGAATTCAAATCT+CGG | 0.519745 | 1.3:+61955906 | MS.gene07260:CDS |
| GTATGGCAATTCGGAGTATG+TGG | 0.526581 | 1.3:+61955447 | MS.gene07260:CDS |
| CCAGCGTCAATGTTCAAATA+CGG | 0.527929 | 1.3:-61948085 | None:intergenic |
| TGTTAGCCTGATACCAGTGT+TGG | 0.528405 | 1.3:+61950172 | MS.gene07260:CDS |
| ACCAGTGTTGGGTGTAGTGG+GGG | 0.530013 | 1.3:+61950184 | MS.gene07260:CDS |
| CCAAGTCATCCATATTATGT+AGG | 0.530338 | 1.3:+61955875 | MS.gene07260:CDS |
| GGATGAAAGCGGAAGACGAA+TGG | 0.530600 | 1.3:+61955641 | MS.gene07260:CDS |
| GTGCAACACAAGCATGCAGT+AGG | 0.531316 | 1.3:-61952944 | None:intergenic |
| TGAGTCTATGCCGTTTATTG+AGG | 0.534928 | 1.3:+61948868 | MS.gene07260:CDS |
| CCACGATCTCCAAATCCTCC+TGG | 0.535514 | 1.3:-61953750 | None:intergenic |
| TGAGTCGGTTGCTGTGATCC+CGG | 0.538290 | 1.3:+61948677 | MS.gene07260:CDS |
| ATCTCCGGCGGAGTCGTTAG+CGG | 0.542697 | 1.3:+61947896 | MS.gene07260:CDS |
| GTTTGTGTGATTGAGCTTGG+AGG | 0.545170 | 1.3:+61948726 | MS.gene07260:CDS |
| GTGCTACACCTCCTGATTTG+CGG | 0.545667 | 1.3:+61952301 | MS.gene07260:CDS |
| TCCCTGACACTGTGTTGTGT+CGG | 0.548570 | 1.3:-61950303 | None:intergenic |
| TTTGGAGATCGTGGTGTGAG+AGG | 0.552633 | 1.3:+61953759 | MS.gene07260:CDS |
| GTTAGCCTGATACCAGTGTT+GGG | 0.554596 | 1.3:+61950173 | MS.gene07260:CDS |
| TCTTGATGTTACACTTACAA+AGG | 0.556810 | 1.3:+61948318 | MS.gene07260:CDS |
| AGAACAATGTTCCTTACTTG+GGG | 0.557436 | 1.3:+61953811 | MS.gene07260:CDS |
| TGGGCTAAAATTTGTTGGCA+GGG | 0.558448 | 1.3:+61955620 | MS.gene07260:CDS |
| TGCTGTCATACCCACTTGAA+AGG | 0.561108 | 1.3:-61948906 | None:intergenic |
| AGGTCTCATATTGGCAGCAA+CGG | 0.563048 | 1.3:+61956303 | MS.gene07260:intron |
| TACCAGTGTTGGGTGTAGTG+GGG | 0.563851 | 1.3:+61950183 | MS.gene07260:CDS |
| ACACTGGTATCAGGCTAACA+TGG | 0.566475 | 1.3:-61950169 | None:intergenic |
| TGTGCTTGAGAAGGAGCGCA+AGG | 0.569431 | 1.3:+61948470 | MS.gene07260:CDS |
| CCAGGAGGATTTGGAGATCG+TGG | 0.581850 | 1.3:+61953750 | MS.gene07260:CDS |
| AATCCAGTTTCTGATTGCAT+CGG | 0.583198 | 1.3:-61948655 | None:intergenic |
| GAGCGCAAGGGAGATTATCT+CGG | 0.583903 | 1.3:+61948483 | MS.gene07260:CDS |
| CAGGTTAGGATTGCCATGGT+GGG | 0.589890 | 1.3:+61952455 | MS.gene07260:intron |
| ATGGGAAGTACCATGAGACT+TGG | 0.591140 | 1.3:+61954140 | MS.gene07260:CDS |
| TCCATGTTCAAAAGGAGACA+TGG | 0.591963 | 1.3:-61948110 | None:intergenic |
| GCAAATCAGGAGGTGTAGCA+CGG | 0.592136 | 1.3:-61952299 | None:intergenic |
| TTTACAGGTTAGGATTGCCA+TGG | 0.595375 | 1.3:+61952451 | MS.gene07260:intron |
| TGCAACACAAGCATGCAGTA+GGG | 0.596048 | 1.3:-61952943 | None:intergenic |
| ATTGAGCTTGGAGGCACTGT+GGG | 0.598258 | 1.3:+61948735 | MS.gene07260:CDS |
| TGGCGGTGACGCCTTTGCCG+AGG | 0.599015 | 1.3:-61947919 | None:intergenic |
| ACAGGTTAGGATTGCCATGG+TGG | 0.599284 | 1.3:+61952454 | MS.gene07260:intron |
| ACGGCAATTATCCTTTCAAG+TGG | 0.601495 | 1.3:+61948895 | MS.gene07260:CDS |
| CAGAAGCACATGCCGCAGCA+TGG | 0.601979 | 1.3:+61953137 | MS.gene07260:CDS |
| GAGGCCGCTAACGACTCCGC+CGG | 0.602079 | 1.3:-61947900 | None:intergenic |
| TTTAGCAAGTCGCTCTGCTG+AGG | 0.603158 | 1.3:+61950356 | MS.gene07260:CDS |
| ACTGAAAACTTACTGGAACA+TGG | 0.606549 | 1.3:-61951366 | None:intergenic |
| CTTCAGAGTCTTCCATGCTG+CGG | 0.607051 | 1.3:-61953149 | None:intergenic |
| CTGCTGTAAAATTGAGTGGT+GGG | 0.610647 | 1.3:-61951633 | None:intergenic |
| CTGATTGCATCGGTGATATG+CGG | 0.611112 | 1.3:-61948645 | None:intergenic |
| ATTCGGAGTATGTGGATGAA+CGG | 0.613690 | 1.3:+61955455 | MS.gene07260:CDS |
| GAGCGACTTGCTAAAAGATG+AGG | 0.613956 | 1.3:-61950348 | None:intergenic |
| GCTTGTGTCTTGGTTCCAGG+AGG | 0.614810 | 1.3:+61953735 | MS.gene07260:CDS |
| GGTCTTCATTTCCATCAACC+GGG | 0.617073 | 1.3:-61948695 | None:intergenic |
| TCTTCGAGATCCAAGTCTCA+TGG | 0.624956 | 1.3:-61954150 | None:intergenic |
| TGAAAGCGGAAGACGAATGG+AGG | 0.626991 | 1.3:+61955644 | MS.gene07260:CDS |
| GCCATGGTGGGAAAATATGT+TGG | 0.628848 | 1.3:+61952467 | MS.gene07260:CDS |
| GTCCATTGCCGCAAATCAGG+AGG | 0.628942 | 1.3:-61952309 | None:intergenic |
| CGGCAATTATCCTTTCAAGT+GGG | 0.631841 | 1.3:+61948896 | MS.gene07260:CDS |
| GCCGACACAACACAGTGTCA+GGG | 0.640779 | 1.3:+61950302 | MS.gene07260:CDS |
| GCCTCTGCTGGAAAGTACCA+AGG | 0.645176 | 1.3:+61951324 | MS.gene07260:intron |
| ACAGGGTTCTAGGACTCACA+TGG | 0.646100 | 1.3:+61954121 | MS.gene07260:intron |
| GAGACTCACTCTAAGTAACA+GGG | 0.646615 | 1.3:-61951516 | None:intergenic |
| TGTTCTTGATGATGGCGGAG+AGG | 0.649503 | 1.3:+61948141 | MS.gene07260:CDS |
| GATTGAGCTTGGAGGCACTG+TGG | 0.652060 | 1.3:+61948734 | MS.gene07260:CDS |
| CGCAGCATGGAAGACTCTGA+AGG | 0.652129 | 1.3:+61953150 | MS.gene07260:CDS |
| GTGCTTGAGAAGGAGCGCAA+GGG | 0.658499 | 1.3:+61948471 | MS.gene07260:CDS |
| CCGTATTTGAACATTGACGC+TGG | 0.659655 | 1.3:+61948085 | MS.gene07260:CDS |
| AATCAGAAACTGGATTGAGT+CGG | 0.661872 | 1.3:+61948662 | MS.gene07260:CDS |
| GCTGCTGTAAAATTGAGTGG+TGG | 0.662926 | 1.3:-61951634 | None:intergenic |
| TTTGTTGGCAGGGATGAAAG+CGG | 0.667172 | 1.3:+61955630 | MS.gene07260:CDS |
| AGGATAATAATATTACTACT+GGG | 0.667804 | 1.3:+61948338 | MS.gene07260:CDS |
| AAGTACGTTCTCATCTCCGG+CGG | 0.672070 | 1.3:+61947884 | MS.gene07260:CDS |
| TAAGCTGCTGTAAAATTGAG+TGG | 0.672139 | 1.3:-61951637 | None:intergenic |
| GACGACGCCGATGCTGCTGG+CGG | 0.688026 | 1.3:-61947936 | None:intergenic |
| GGCGTCGTCCTCAAAGCCTG+CGG | 0.692971 | 1.3:+61947950 | MS.gene07260:CDS |
| CAATCACACAAACATCAGCA+GGG | 0.701082 | 1.3:-61948716 | None:intergenic |
| AGACTCACTCTAAGTAACAG+GGG | 0.704240 | 1.3:-61951515 | None:intergenic |
| CAGGGTTCTAGGACTCACAT+GGG | 0.704702 | 1.3:+61954122 | MS.gene07260:intron |
| GTCTCATATTGGCAGCAACG+GGG | 0.722190 | 1.3:+61956305 | MS.gene07260:CDS |
| TAGTACTAACAGATTCAGTG+AGG | 0.746597 | 1.3:-61952356 | None:intergenic |
| ACGGCATCGTCATAGATACG+AGG | 0.761487 | 1.3:+61955474 | MS.gene07260:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 61947881 | 61956372 | 61947881 | ID=MS.gene07260 |
| chr1.3 | mRNA | 61947881 | 61956372 | 61947881 | ID=MS.gene07260.t1;Parent=MS.gene07260 |
| chr1.3 | exon | 61947881 | 61947998 | 61947881 | ID=MS.gene07260.t1.exon1;Parent=MS.gene07260.t1 |
| chr1.3 | CDS | 61947881 | 61947998 | 61947881 | ID=cds.MS.gene07260.t1;Parent=MS.gene07260.t1 |
| chr1.3 | exon | 61948083 | 61948162 | 61948083 | ID=MS.gene07260.t1.exon2;Parent=MS.gene07260.t1 |
| chr1.3 | CDS | 61948083 | 61948162 | 61948083 | ID=cds.MS.gene07260.t1;Parent=MS.gene07260.t1 |
| chr1.3 | exon | 61948286 | 61948372 | 61948286 | ID=MS.gene07260.t1.exon3;Parent=MS.gene07260.t1 |
| chr1.3 | CDS | 61948286 | 61948372 | 61948286 | ID=cds.MS.gene07260.t1;Parent=MS.gene07260.t1 |
| chr1.3 | exon | 61948468 | 61948518 | 61948468 | ID=MS.gene07260.t1.exon4;Parent=MS.gene07260.t1 |
| chr1.3 | CDS | 61948468 | 61948518 | 61948468 | ID=cds.MS.gene07260.t1;Parent=MS.gene07260.t1 |
| chr1.3 | exon | 61948639 | 61948756 | 61948639 | ID=MS.gene07260.t1.exon5;Parent=MS.gene07260.t1 |
| chr1.3 | CDS | 61948639 | 61948756 | 61948639 | ID=cds.MS.gene07260.t1;Parent=MS.gene07260.t1 |
| chr1.3 | exon | 61948861 | 61948917 | 61948861 | ID=MS.gene07260.t1.exon6;Parent=MS.gene07260.t1 |
| chr1.3 | CDS | 61948861 | 61948917 | 61948861 | ID=cds.MS.gene07260.t1;Parent=MS.gene07260.t1 |
| chr1.3 | exon | 61950147 | 61950211 | 61950147 | ID=MS.gene07260.t1.exon7;Parent=MS.gene07260.t1 |
| chr1.3 | CDS | 61950147 | 61950211 | 61950147 | ID=cds.MS.gene07260.t1;Parent=MS.gene07260.t1 |
| chr1.3 | exon | 61950294 | 61950377 | 61950294 | ID=MS.gene07260.t1.exon8;Parent=MS.gene07260.t1 |
| chr1.3 | CDS | 61950294 | 61950377 | 61950294 | ID=cds.MS.gene07260.t1;Parent=MS.gene07260.t1 |
| chr1.3 | exon | 61951325 | 61951375 | 61951325 | ID=MS.gene07260.t1.exon9;Parent=MS.gene07260.t1 |
| chr1.3 | CDS | 61951325 | 61951375 | 61951325 | ID=cds.MS.gene07260.t1;Parent=MS.gene07260.t1 |
| chr1.3 | exon | 61951467 | 61951529 | 61951467 | ID=MS.gene07260.t1.exon10;Parent=MS.gene07260.t1 |
| chr1.3 | CDS | 61951467 | 61951529 | 61951467 | ID=cds.MS.gene07260.t1;Parent=MS.gene07260.t1 |
| chr1.3 | exon | 61951623 | 61951669 | 61951623 | ID=MS.gene07260.t1.exon11;Parent=MS.gene07260.t1 |
| chr1.3 | CDS | 61951623 | 61951669 | 61951623 | ID=cds.MS.gene07260.t1;Parent=MS.gene07260.t1 |
| chr1.3 | exon | 61952299 | 61952368 | 61952299 | ID=MS.gene07260.t1.exon12;Parent=MS.gene07260.t1 |
| chr1.3 | CDS | 61952299 | 61952368 | 61952299 | ID=cds.MS.gene07260.t1;Parent=MS.gene07260.t1 |
| chr1.3 | exon | 61952458 | 61952520 | 61952458 | ID=MS.gene07260.t1.exon13;Parent=MS.gene07260.t1 |
| chr1.3 | CDS | 61952458 | 61952520 | 61952458 | ID=cds.MS.gene07260.t1;Parent=MS.gene07260.t1 |
| chr1.3 | exon | 61952942 | 61953031 | 61952942 | ID=MS.gene07260.t1.exon14;Parent=MS.gene07260.t1 |
| chr1.3 | CDS | 61952942 | 61953031 | 61952942 | ID=cds.MS.gene07260.t1;Parent=MS.gene07260.t1 |
| chr1.3 | exon | 61953133 | 61953171 | 61953133 | ID=MS.gene07260.t1.exon15;Parent=MS.gene07260.t1 |
| chr1.3 | CDS | 61953133 | 61953171 | 61953133 | ID=cds.MS.gene07260.t1;Parent=MS.gene07260.t1 |
| chr1.3 | exon | 61953729 | 61953878 | 61953729 | ID=MS.gene07260.t1.exon16;Parent=MS.gene07260.t1 |
| chr1.3 | CDS | 61953729 | 61953878 | 61953729 | ID=cds.MS.gene07260.t1;Parent=MS.gene07260.t1 |
| chr1.3 | exon | 61953970 | 61954047 | 61953970 | ID=MS.gene07260.t1.exon17;Parent=MS.gene07260.t1 |
| chr1.3 | CDS | 61953970 | 61954047 | 61953970 | ID=cds.MS.gene07260.t1;Parent=MS.gene07260.t1 |
| chr1.3 | exon | 61954125 | 61954210 | 61954125 | ID=MS.gene07260.t1.exon18;Parent=MS.gene07260.t1 |
| chr1.3 | CDS | 61954125 | 61954210 | 61954125 | ID=cds.MS.gene07260.t1;Parent=MS.gene07260.t1 |
| chr1.3 | exon | 61955447 | 61955495 | 61955447 | ID=MS.gene07260.t1.exon19;Parent=MS.gene07260.t1 |
| chr1.3 | CDS | 61955447 | 61955495 | 61955447 | ID=cds.MS.gene07260.t1;Parent=MS.gene07260.t1 |
| chr1.3 | exon | 61955585 | 61955665 | 61955585 | ID=MS.gene07260.t1.exon20;Parent=MS.gene07260.t1 |
| chr1.3 | CDS | 61955585 | 61955665 | 61955585 | ID=cds.MS.gene07260.t1;Parent=MS.gene07260.t1 |
| chr1.3 | exon | 61955863 | 61955956 | 61955863 | ID=MS.gene07260.t1.exon21;Parent=MS.gene07260.t1 |
| chr1.3 | CDS | 61955863 | 61955956 | 61955863 | ID=cds.MS.gene07260.t1;Parent=MS.gene07260.t1 |
| chr1.3 | exon | 61956305 | 61956372 | 61956305 | ID=MS.gene07260.t1.exon22;Parent=MS.gene07260.t1 |
| chr1.3 | CDS | 61956305 | 61956372 | 61956305 | ID=cds.MS.gene07260.t1;Parent=MS.gene07260.t1 |
| Gene Sequence |
| Protein sequence |
