Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072600.t1 | AES82362.2 | 98.2 | 504 | 9 | 0 | 1 | 504 | 8 | 511 | 4.20E-293 | 1016.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072600.t1 | P42211 | 58.7 | 506 | 197 | 4 | 1 | 504 | 1 | 496 | 2.1e-176 | 620.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072600.t1 | G7KWE8 | 98.2 | 504 | 9 | 0 | 1 | 504 | 1 | 504 | 3.0e-293 | 1016.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050797 | MS.gene072600 | 0.803375 | 3.59E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072600.t1 | MTR_7g111530 | 98.214 | 504 | 9 | 0 | 1 | 504 | 8 | 511 | 0.0 | 1029 |
| MS.gene072600.t1 | MTR_7g111530 | 98.214 | 504 | 9 | 0 | 1 | 504 | 1 | 504 | 0.0 | 1029 |
| MS.gene072600.t1 | MTR_7g111530 | 97.987 | 447 | 9 | 0 | 1 | 447 | 1 | 447 | 0.0 | 909 |
| MS.gene072600.t1 | MTR_1g484940 | 77.603 | 509 | 108 | 2 | 1 | 504 | 1 | 508 | 0.0 | 840 |
| MS.gene072600.t1 | MTR_4g123563 | 53.984 | 502 | 220 | 3 | 5 | 504 | 5 | 497 | 0.0 | 593 |
| MS.gene072600.t1 | MTR_4g132420 | 55.385 | 520 | 215 | 5 | 1 | 504 | 1 | 519 | 0.0 | 576 |
| MS.gene072600.t1 | MTR_2g023910 | 57.031 | 512 | 210 | 4 | 1 | 504 | 1 | 510 | 0.0 | 573 |
| MS.gene072600.t1 | MTR_2g045420 | 53.438 | 509 | 230 | 4 | 1 | 504 | 1 | 507 | 0.0 | 566 |
| MS.gene072600.t1 | MTR_2g045420 | 50.746 | 536 | 230 | 5 | 1 | 504 | 1 | 534 | 0.0 | 552 |
| MS.gene072600.t1 | MTR_2g045420 | 50.841 | 535 | 230 | 5 | 1 | 504 | 1 | 533 | 0.0 | 552 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072600.t1 | AT1G11910 | 60.159 | 502 | 190 | 5 | 6 | 504 | 12 | 506 | 0.0 | 618 |
| MS.gene072600.t1 | AT1G11910 | 60.159 | 502 | 190 | 5 | 6 | 504 | 23 | 517 | 0.0 | 617 |
| MS.gene072600.t1 | AT1G62290 | 56.920 | 513 | 210 | 5 | 1 | 503 | 1 | 512 | 0.0 | 598 |
| MS.gene072600.t1 | AT1G62290 | 56.920 | 513 | 210 | 5 | 1 | 503 | 1 | 512 | 0.0 | 598 |
| MS.gene072600.t1 | AT4G04460 | 53.082 | 503 | 230 | 3 | 6 | 504 | 8 | 508 | 0.0 | 562 |
| MS.gene072600.t1 | AT4G04460 | 52.883 | 503 | 227 | 4 | 6 | 504 | 8 | 504 | 0.0 | 555 |
| MS.gene072600.t1 | AT1G62290 | 55.441 | 487 | 206 | 5 | 1 | 477 | 1 | 486 | 0.0 | 553 |
| MS.gene072600.t1 | AT1G62290 | 55.142 | 457 | 194 | 5 | 1 | 447 | 1 | 456 | 5.34e-178 | 508 |
| MS.gene072600.t1 | AT1G62290 | 55.142 | 457 | 194 | 5 | 1 | 447 | 1 | 456 | 5.34e-178 | 508 |
| MS.gene072600.t1 | AT1G62290 | 55.024 | 418 | 177 | 5 | 1 | 408 | 1 | 417 | 1.50e-158 | 457 |
| MS.gene072600.t1 | AT4G22050 | 41.111 | 270 | 150 | 7 | 44 | 309 | 10 | 274 | 9.14e-54 | 185 |
| MS.gene072600.t1 | AT4G22050 | 41.860 | 86 | 39 | 3 | 422 | 504 | 276 | 353 | 1.45e-11 | 66.2 |
| MS.gene072600.t1 | AT1G69100 | 39.689 | 257 | 138 | 9 | 73 | 318 | 47 | 297 | 1.80e-49 | 174 |
| MS.gene072600.t1 | AT1G69100 | 39.689 | 257 | 138 | 9 | 73 | 318 | 39 | 289 | 2.32e-49 | 174 |
Find 0 sgRNAs with CRISPR-Local
Find 226 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATTTCAAATGTTATTTTT+AGG | + | 50598:10849-10868 | MS.gene072600:intron | 10.0% |
| !! | TAGGATATTAATTAGTAAAA+TGG | - | 50598:12315-12334 | None:intergenic | 15.0% |
| !! | ACAAATTACAATTCTATTTC+TGG | + | 50598:11541-11560 | MS.gene072600:intron | 20.0% |
| !! | ATCATGTATACTTAATACAT+TGG | - | 50598:10823-10842 | None:intergenic | 20.0% |
| !! | GTAACTAAACTTACATTAAA+TGG | - | 50598:9864-9883 | None:intergenic | 20.0% |
| !! | TATACAACAAATAAACATAG+AGG | - | 50598:10790-10809 | None:intergenic | 20.0% |
| !! | TATGTAAAAATTGCAAACAA+TGG | - | 50598:11351-11370 | None:intergenic | 20.0% |
| !!! | ATTTTTCAAAACATAGTGAA+TGG | - | 50598:10736-10755 | None:intergenic | 20.0% |
| !!! | GAGGATATATTTTGAAATAA+GGG | + | 50598:10662-10681 | MS.gene072600:intron | 20.0% |
| !!! | GTTTTATATTTCACTTTGAA+CGG | + | 50598:11761-11780 | MS.gene072600:intron | 20.0% |
| !!! | TAAATCTTTTTTCAGGTAAA+TGG | - | 50598:10536-10555 | None:intergenic | 20.0% |
| !!! | TACAGGTTGATAATTTTTTT+TGG | - | 50598:12201-12220 | None:intergenic | 20.0% |
| !!! | TGAGGATATATTTTGAAATA+AGG | + | 50598:10661-10680 | MS.gene072600:intron | 20.0% |
| !!! | TTTTCTTTTCAGATTGAAAT+GGG | + | 50598:10565-10584 | MS.gene072600:intron | 20.0% |
| !!! | TTTTTCTTTTCAGATTGAAA+TGG | + | 50598:10564-10583 | MS.gene072600:intron | 20.0% |
| ! | AAATCACTACTATAAACTGT+AGG | + | 50598:10064-10083 | MS.gene072600:intron | 25.0% |
| ! | ACATCTTGTAAAATAAGCTA+TGG | + | 50598:9907-9926 | MS.gene072600:CDS | 25.0% |
| ! | AGTCAAGATAATGTTAAAGT+TGG | + | 50598:9955-9974 | MS.gene072600:CDS | 25.0% |
| ! | CAATCTGAAAAGAAAAACTT+TGG | - | 50598:10561-10580 | None:intergenic | 25.0% |
| ! | CATTAAATGGCACATAAATA+TGG | - | 50598:9851-9870 | None:intergenic | 25.0% |
| ! | TAAGCTGTAATGATATTTCT+AGG | + | 50598:11868-11887 | MS.gene072600:CDS | 25.0% |
| ! | TCCAAGACATATAACAAAAA+CGG | + | 50598:9803-9822 | MS.gene072600:CDS | 25.0% |
| ! | TTAGATATTCAGTTCTGTTT+CGG | - | 50598:11977-11996 | None:intergenic | 25.0% |
| ! | TTATATATGTACCATAGGTT+TGG | - | 50598:9699-9718 | None:intergenic | 25.0% |
| ! | TTGAGGACATATATATCAAA+GGG | - | 50598:11729-11748 | None:intergenic | 25.0% |
| ! | TTTACTGTCATATTTGATAC+CGG | + | 50598:9604-9623 | MS.gene072600:CDS | 25.0% |
| !! | AGAAATTACTTAGACTTTTG+AGG | + | 50598:10643-10662 | MS.gene072600:intron | 25.0% |
| !! | AGTACCTTTGAAGAATTATA+TGG | + | 50598:9534-9553 | MS.gene072600:CDS | 25.0% |
| !! | ATGATGGAACAAAATCTTAT+CGG | + | 50598:10331-10350 | MS.gene072600:CDS | 25.0% |
| !! | TTTCAGGTAAATGGTTTAAT+TGG | - | 50598:10527-10546 | None:intergenic | 25.0% |
| !! | TTTCAGTATATTCTAAGAAC+CGG | + | 50598:12090-12109 | MS.gene072600:intron | 25.0% |
| !! | TTTTGTCAATGAGAAAGTTT+AGG | + | 50598:11456-11475 | MS.gene072600:intron | 25.0% |
| !!! | TAGTATGGATGCTTTTAAAA+TGG | + | 50598:9444-9463 | MS.gene072600:CDS | 25.0% |
| !!! | TTATTTTTAGGTGTTTGTGA+AGG | + | 50598:10861-10880 | MS.gene072600:intron | 25.0% |
| !!! | TTTGGTGTAAATCTTTTTTC+AGG | - | 50598:10543-10562 | None:intergenic | 25.0% |
| AAACTTGAAACATACCATAC+TGG | - | 50598:10194-10213 | None:intergenic | 30.0% | |
| AAGATCAAACTCATTTAGGT+AGG | - | 50598:11226-11245 | None:intergenic | 30.0% | |
| ACTTACAGAAAAGTAACACT+TGG | - | 50598:9656-9675 | None:intergenic | 30.0% | |
| ATGATAGACCAGTAAATTGA+AGG | - | 50598:10294-10313 | None:intergenic | 30.0% | |
| ATTGAGTGCTTGAAAGAATT+TGG | + | 50598:10689-10708 | MS.gene072600:intron | 30.0% | |
| CCAGAATCAACTAAAACAAA+AGG | + | 50598:11663-11682 | MS.gene072600:CDS | 30.0% | |
| CTTGAGGACATATATATCAA+AGG | - | 50598:11730-11749 | None:intergenic | 30.0% | |
| GATCAAGATCAAACTCATTT+AGG | - | 50598:11230-11249 | None:intergenic | 30.0% | |
| GGAAAGTTTGATGGAATATT+TGG | + | 50598:10131-10150 | MS.gene072600:CDS | 30.0% | |
| GGTATCAAATATGACAGTAA+AGG | - | 50598:9605-9624 | None:intergenic | 30.0% | |
| GTTATAGAAGAACATACAGT+TGG | - | 50598:10933-10952 | None:intergenic | 30.0% | |
| TAAACTGTAGGATTTCATTG+AGG | + | 50598:10076-10095 | MS.gene072600:intron | 30.0% | |
| TATATGGACGCTCAATATTT+CGG | + | 50598:9550-9569 | MS.gene072600:CDS | 30.0% | |
| TGTAAAATAAGCTATGGAAC+CGG | + | 50598:9913-9932 | MS.gene072600:CDS | 30.0% | |
| TTCATGTAACTCTTCATTCA+TGG | - | 50598:12271-12290 | None:intergenic | 30.0% | |
| TTGACTTTACTTGGTTGTTA+TGG | + | 50598:11481-11500 | MS.gene072600:intron | 30.0% | |
| TTGTTTCATTGCACATCAAT+TGG | + | 50598:11372-11391 | MS.gene072600:intron | 30.0% | |
| TTTGATGGAATATTTGGACT+TGG | + | 50598:10137-10156 | MS.gene072600:CDS | 30.0% | |
| ! | AGAATTTGGAATTTGGTACA+AGG | + | 50598:10703-10722 | MS.gene072600:intron | 30.0% |
| ! | GCTTGAAAGAATTTGGAATT+TGG | + | 50598:10696-10715 | MS.gene072600:intron | 30.0% |
| ! | GGAGATAAATTAGTTTGATC+AGG | + | 50598:10497-10516 | MS.gene072600:intron | 30.0% |
| ! | TGAGTTTTTCTGTTGATCAT+TGG | + | 50598:11802-11821 | MS.gene072600:intron | 30.0% |
| !! | AAGGAAGTTGTTTCTCAATA+TGG | + | 50598:11077-11096 | MS.gene072600:CDS | 30.0% |
| !! | ACCGTTTTTGTTATATGTCT+TGG | - | 50598:9807-9826 | None:intergenic | 30.0% |
| !! | AGTTTCAACTAGTCTTTGTT+TGG | + | 50598:10209-10228 | MS.gene072600:intron | 30.0% |
| !! | TCAATATGGAGAGTTGATAT+GGG | + | 50598:11091-11110 | MS.gene072600:CDS | 30.0% |
| !!! | CCTTTTGTTTTAGTTGATTC+TGG | - | 50598:11666-11685 | None:intergenic | 30.0% |
| !!! | GAAATGGGAGATTTTTTCAT+TGG | + | 50598:10580-10599 | MS.gene072600:CDS | 30.0% |
| !!! | GTTTTCCTTTGAAATGCTTA+GGG | - | 50598:10435-10454 | None:intergenic | 30.0% |
| !!! | TCTTGGTGATGTTTTTATGA+GGG | + | 50598:12356-12375 | MS.gene072600:CDS | 30.0% |
| !!! | TGTTTTCCTTTGAAATGCTT+AGG | - | 50598:10436-10455 | None:intergenic | 30.0% |
| !!! | TTCTTGGTGATGTTTTTATG+AGG | + | 50598:12355-12374 | MS.gene072600:CDS | 30.0% |
| AAAACTACAACTTGAGCTTG+AGG | - | 50598:11746-11765 | None:intergenic | 35.0% | |
| AAAAGAAAGACTTCCTTCTC+GGG | - | 50598:10105-10124 | None:intergenic | 35.0% | |
| AAATCACAGGTACAACATGA+TGG | + | 50598:10315-10334 | MS.gene072600:intron | 35.0% | |
| AACACAGAACTTCATAGAGA+AGG | - | 50598:11147-11166 | None:intergenic | 35.0% | |
| AACATAGAGGTGAATATGCA+CGG | - | 50598:10777-10796 | None:intergenic | 35.0% | |
| AATATGACAGTAAAGGTCTG+TGG | - | 50598:9598-9617 | None:intergenic | 35.0% | |
| ACAAAATCTTATCGGTGAGA+AGG | + | 50598:10339-10358 | MS.gene072600:CDS | 35.0% | |
| ACCTCTAGATCTTCATAGTA+TGG | + | 50598:9429-9448 | MS.gene072600:CDS | 35.0% | |
| ACTAAAACAAAAGGCAACCA+AGG | + | 50598:11672-11691 | MS.gene072600:CDS | 35.0% | |
| AGGAAAACACACTTATGTTC+CGG | + | 50598:10447-10466 | MS.gene072600:CDS | 35.0% | |
| ATAGTTGAATACTCTCTCCT+TGG | - | 50598:11692-11711 | None:intergenic | 35.0% | |
| ATATGACAGTAAAGGTCTGT+GGG | - | 50598:9597-9616 | None:intergenic | 35.0% | |
| ATCTGACAAGAAGAACACAA+AGG | - | 50598:11628-11647 | None:intergenic | 35.0% | |
| CAAAAGCAATAAACCCACTA+AGG | - | 50598:12137-12156 | None:intergenic | 35.0% | |
| CGCTCTTATATATGTACCAT+AGG | - | 50598:9704-9723 | None:intergenic | 35.0% | |
| CTATACCCATAATTGGTACA+AGG | + | 50598:9772-9791 | MS.gene072600:CDS | 35.0% | |
| CTGGTCTATCATAAAATCAC+AGG | + | 50598:10302-10321 | MS.gene072600:intron | 35.0% | |
| CTTTGCCTTGTACCAATTAT+GGG | - | 50598:9780-9799 | None:intergenic | 35.0% | |
| GAAAAGAAAGACTTCCTTCT+CGG | - | 50598:10106-10125 | None:intergenic | 35.0% | |
| GAAAAGTAACACTTGGATGA+TGG | - | 50598:9649-9668 | None:intergenic | 35.0% | |
| GAAGTAACCAGATATTGATC+CGG | - | 50598:9935-9954 | None:intergenic | 35.0% | |
| GATTGAGATGGTTACTGAAA+AGG | + | 50598:11573-11592 | MS.gene072600:CDS | 35.0% | |
| GCGTCCATATAATTCTTCAA+AGG | - | 50598:9541-9560 | None:intergenic | 35.0% | |
| GCTTCATCTTCAACATAAAC+TGG | + | 50598:10019-10038 | MS.gene072600:intron | 35.0% | |
| GTGAGTGCATATATGATTAC+AGG | - | 50598:12218-12237 | None:intergenic | 35.0% | |
| GTTTAGGTCTTGACTTTACT+TGG | + | 50598:11472-11491 | MS.gene072600:intron | 35.0% | |
| TATCTAAAGATCGAGACTAG+TGG | + | 50598:12024-12043 | MS.gene072600:intron | 35.0% | |
| TATGTTCCGGTTACTGAAAA+AGG | + | 50598:10460-10479 | MS.gene072600:CDS | 35.0% | |
| TATTCAGTTCTGTTTCGGAA+AGG | - | 50598:11972-11991 | None:intergenic | 35.0% | |
| TCCATACTATGAAGATCTAG+AGG | - | 50598:9433-9452 | None:intergenic | 35.0% | |
| TCTTTGCCTTGTACCAATTA+TGG | - | 50598:9781-9800 | None:intergenic | 35.0% | |
| TGGTTGTTATGGAACATTTC+TGG | + | 50598:11492-11511 | MS.gene072600:intron | 35.0% | |
| TTGTCAGATGCTTGTTCTTT+GGG | + | 50598:11639-11658 | MS.gene072600:CDS | 35.0% | |
| ! | AGAAGGAAGTCTTTCTTTTC+TGG | + | 50598:10106-10125 | MS.gene072600:CDS | 35.0% |
| ! | CACAACATGTCACTCTAAAA+TGG | - | 50598:10258-10277 | None:intergenic | 35.0% |
| ! | TATATTCTAAGAACCGGAGA+AGG | + | 50598:12096-12115 | MS.gene072600:CDS | 35.0% |
| ! | TATCACACTGTTTTCGACTA+CGG | + | 50598:12381-12400 | MS.gene072600:CDS | 35.0% |
| !! | CTCAATATGGAGAGTTGATA+TGG | + | 50598:11090-11109 | MS.gene072600:CDS | 35.0% |
| !!! | ATGGGAGATTTTTTCATTGG+AGG | + | 50598:10583-10602 | MS.gene072600:CDS | 35.0% |
| !!! | CAGTAACCTTTTTCAGTAAC+CGG | - | 50598:10469-10488 | None:intergenic | 35.0% |
| !!! | TGTTCTCTTTTTGGCTCAAT+GGG | + | 50598:10362-10381 | MS.gene072600:CDS | 35.0% |
| !!! | TTTTTAGGTGTTTGTGAAGG+TGG | + | 50598:10864-10883 | MS.gene072600:intron | 35.0% |
| AAAAAGGTTACTGGCAGGTT+AGG | + | 50598:10476-10495 | MS.gene072600:intron | 40.0% | |
| AAACAATGGAAGCAGACAGT+AGG | - | 50598:11337-11356 | None:intergenic | 40.0% | |
| AACAATGGAAGCAGACAGTA+GGG | - | 50598:11336-11355 | None:intergenic | 40.0% | |
| AACTCTTGTCTCCAAACCTA+TGG | + | 50598:9685-9704 | MS.gene072600:intron | 40.0% | |
| AATCCTAATGCGAAAAAGGG+TGG | + | 50598:10385-10404 | MS.gene072600:CDS | 40.0% | |
| ACCAATTCTCATCATCCCAA+AGG | - | 50598:9398-9417 | None:intergenic | 40.0% | |
| AGAACTTCATAGAGAAGGCA+GGG | - | 50598:11142-11161 | None:intergenic | 40.0% | |
| AGACCAGTAAATTGAAGGCA+CGG | - | 50598:10289-10308 | None:intergenic | 40.0% | |
| AGAGAACAACAGCTAAGATC+AGG | + | 50598:9469-9488 | MS.gene072600:CDS | 40.0% | |
| ATATGGGATCTCCTAGTATC+AGG | + | 50598:11107-11126 | MS.gene072600:CDS | 40.0% | |
| ATTTAGGTAGGTCCAAAGAG+TGG | - | 50598:11214-11233 | None:intergenic | 40.0% | |
| CACTTTGTTACTCGTTGATC+AGG | + | 50598:9883-9902 | MS.gene072600:intron | 40.0% | |
| CCAAACATTTCCTTCACGAT+CGG | + | 50598:11894-11913 | MS.gene072600:CDS | 40.0% | |
| CGGTTACTGAAAAAGGTTAC+TGG | + | 50598:10467-10486 | MS.gene072600:CDS | 40.0% | |
| CTGACCTATTAGATTGATCC+CGG | - | 50598:11305-11324 | None:intergenic | 40.0% | |
| CTTGTCAGATGCTTGTTCTT+TGG | + | 50598:11638-11657 | MS.gene072600:CDS | 40.0% | |
| GACTTATGTGCAAGCATCAT+TGG | - | 50598:9499-9518 | None:intergenic | 40.0% | |
| GCTGAAATCAACCATGCTAT+TGG | + | 50598:11026-11045 | MS.gene072600:CDS | 40.0% | |
| GGAGAAAGAATATACCAGAG+TGG | - | 50598:12180-12199 | None:intergenic | 40.0% | |
| GGGAATCCTAATGCGAAAAA+GGG | + | 50598:10382-10401 | MS.gene072600:CDS | 40.0% | |
| GTACCAATTATGGGTATAGC+AGG | - | 50598:9771-9790 | None:intergenic | 40.0% | |
| GTTGACCCTAAGCATTTCAA+AGG | + | 50598:10427-10446 | MS.gene072600:CDS | 40.0% | |
| TACTGAAAAAGGTTACTGGC+AGG | + | 50598:10471-10490 | MS.gene072600:CDS | 40.0% | |
| TATGACAGTAAAGGTCTGTG+GGG | - | 50598:9596-9615 | None:intergenic | 40.0% | |
| TATGGAACCGGATCAATATC+TGG | + | 50598:9925-9944 | MS.gene072600:CDS | 40.0% | |
| TATGGGATCTCCTAGTATCA+GGG | + | 50598:11108-11127 | MS.gene072600:CDS | 40.0% | |
| TATTTCGGTGAGATCGCAAT+TGG | + | 50598:9565-9584 | MS.gene072600:CDS | 40.0% | |
| TGAGTTTGATCTTGATCTGC+AGG | + | 50598:11233-11252 | MS.gene072600:intron | 40.0% | |
| TGATCAACTTTAGCCTGTTG+TGG | + | 50598:11004-11023 | MS.gene072600:intron | 40.0% | |
| TGGGAATCCTAATGCGAAAA+AGG | + | 50598:10381-10400 | MS.gene072600:CDS | 40.0% | |
| TTCATTGGAGGTTTGTCAAC+AGG | + | 50598:10595-10614 | MS.gene072600:CDS | 40.0% | |
| TTGAAAGAGCTTTGCCAGTA+TGG | + | 50598:10177-10196 | MS.gene072600:CDS | 40.0% | |
| TTGCCTGCTATACCCATAAT+TGG | + | 50598:9765-9784 | MS.gene072600:CDS | 40.0% | |
| TTTCCGTGCCTTCAATTTAC+TGG | + | 50598:10283-10302 | MS.gene072600:intron | 40.0% | |
| TTTGATGTTCCTCCTCCAAA+GGG | + | 50598:12153-12172 | MS.gene072600:CDS | 40.0% | |
| ! | TTTCTGGCAGGAAAGTTTGA+TGG | + | 50598:10122-10141 | MS.gene072600:CDS | 40.0% |
| ! | TTTTGATGTTCCTCCTCCAA+AGG | + | 50598:12152-12171 | MS.gene072600:CDS | 40.0% |
| !! | AATTCTATTTCTGGCAGTGC+TGG | + | 50598:11550-11569 | MS.gene072600:intron | 40.0% |
| !! | ACAGCTTATCACTGATTCAC+CGG | - | 50598:11856-11875 | None:intergenic | 40.0% |
| !! | AGTTCTGAGTGTAGAATGCA+AGG | + | 50598:11058-11077 | MS.gene072600:CDS | 40.0% |
| !! | ATTCTATTTCTGGCAGTGCT+GGG | + | 50598:11551-11570 | MS.gene072600:intron | 40.0% |
| !! | TCCTTTGGGATGATGAGAAT+TGG | + | 50598:9394-9413 | MS.gene072600:CDS | 40.0% |
| !!! | AAGGGTGGTGAATTGGTTTT+TGG | + | 50598:10400-10419 | MS.gene072600:CDS | 40.0% |
| !!! | GTGAGAAGGTGTTCTCTTTT+TGG | + | 50598:10353-10372 | MS.gene072600:CDS | 40.0% |
| !!! | GTGTTCTCTTTTTGGCTCAA+TGG | + | 50598:10361-10380 | MS.gene072600:CDS | 40.0% |
| AAAGGAGAAGGAAGGAAGCA+GGG | - | 50598:9380-9399 | None:intergenic | 45.0% | |
| AACATCACCAAGAATCCTGC+AGG | - | 50598:12349-12368 | None:intergenic | 45.0% | |
| AACCATGCTATTGGAGCTGA+AGG | + | 50598:11035-11054 | MS.gene072600:CDS | 45.0% | |
| AACCCAAAGGTTGGAACTAC+CGG | - | 50598:9626-9645 | None:intergenic | 45.0% | |
| ACCTATTAGATTGATCCCGG+CGG | - | 50598:11302-11321 | None:intergenic | 45.0% | |
| ACTTGTGAACATACGTCACC+AGG | - | 50598:11264-11283 | None:intergenic | 45.0% | |
| ATACCGGTAGTTCCAACCTT+TGG | + | 50598:9620-9639 | MS.gene072600:CDS | 45.0% | |
| ATATACCAGAGTGGACCCTT+TGG | - | 50598:12171-12190 | None:intergenic | 45.0% | |
| ATCATCCCAAAGGAGAAGGA+AGG | - | 50598:9388-9407 | None:intergenic | 45.0% | |
| ATGACAGTAAAGGTCTGTGG+GGG | - | 50598:9595-9614 | None:intergenic | 45.0% | |
| ATGGGATCTCCTAGTATCAG+GGG | + | 50598:11109-11128 | MS.gene072600:CDS | 45.0% | |
| ATTACACAGGTCTGCCTTAG+TGG | + | 50598:12120-12139 | MS.gene072600:CDS | 45.0% | |
| CAAAGAGTGGAAATGCAAGC+GGG | - | 50598:11201-11220 | None:intergenic | 45.0% | |
| CAGAACTTCATAGAGAAGGC+AGG | - | 50598:11143-11162 | None:intergenic | 45.0% | |
| CAGCTTCAGCAAAACCAACT+TGG | - | 50598:12413-12432 | None:intergenic | 45.0% | |
| CAGTTCTGTTGTCAAGCATC+AGG | + | 50598:9978-9997 | MS.gene072600:CDS | 45.0% | |
| CCAAAGAGTGGAAATGCAAG+CGG | - | 50598:11202-11221 | None:intergenic | 45.0% | |
| CCGATCGTGAAGGAAATGTT+TGG | - | 50598:11897-11916 | None:intergenic | 45.0% | |
| CCTATATGCTATATGCCTGC+AGG | + | 50598:12331-12350 | MS.gene072600:intron | 45.0% | |
| CCTGCAGGCATATAGCATAT+AGG | - | 50598:12334-12353 | None:intergenic | 45.0% | |
| CGGGATCAATCTAATAGGTC+AGG | + | 50598:11303-11322 | MS.gene072600:intron | 45.0% | |
| CTATATGCCTGCAGGATTCT+TGG | + | 50598:12339-12358 | MS.gene072600:intron | 45.0% | |
| CTTCAGCAAAACCAACTTGG+AGG | - | 50598:12410-12429 | None:intergenic | 45.0% | |
| CTTGATCTGCAGGTAAAACC+TGG | + | 50598:11243-11262 | MS.gene072600:intron | 45.0% | |
| GAAATGATAACAGGCTGCTG+CGG | - | 50598:11179-11198 | None:intergenic | 45.0% | |
| GGTGACGTATGTTCACAAGT+TGG | + | 50598:11264-11283 | MS.gene072600:CDS | 45.0% | |
| GTTTCGGAAAGGTAGCTAGT+AGG | - | 50598:11961-11980 | None:intergenic | 45.0% | |
| TACCGGTAGTTCCAACCTTT+GGG | + | 50598:9621-9640 | MS.gene072600:CDS | 45.0% | |
| TAGGTAATCCGAACCTGTTC+TGG | - | 50598:11942-11961 | None:intergenic | 45.0% | |
| TCAGGAACATCTTTGCTTGC+TGG | + | 50598:10906-10925 | MS.gene072600:CDS | 45.0% | |
| TCTCATCATCCCAAAGGAGA+AGG | - | 50598:9392-9411 | None:intergenic | 45.0% | |
| TGCAAGCGGGAAATGATAAC+AGG | - | 50598:11188-11207 | None:intergenic | 45.0% | |
| TGCGAAAAAGGGTGGTGAAT+TGG | + | 50598:10393-10412 | MS.gene072600:CDS | 45.0% | |
| TGCTTCCTTCCTTCTCCTTT+GGG | + | 50598:9380-9399 | MS.gene072600:CDS | 45.0% | |
| TGTTGTGGCGTTCTGTTTGT+TGG | + | 50598:9342-9361 | MS.gene072600:CDS | 45.0% | |
| TTACACAGGTCTGCCTTAGT+GGG | + | 50598:12121-12140 | MS.gene072600:CDS | 45.0% | |
| TTGGTTTATGTTCCATCCGC+CGG | + | 50598:11283-11302 | MS.gene072600:CDS | 45.0% | |
| ! | GGGGCAAACACATTTTGTTG+TGG | + | 50598:9327-9346 | MS.gene072600:CDS | 45.0% |
| ! | TGGTTGATTTCAGCCACAAC+AGG | - | 50598:11020-11039 | None:intergenic | 45.0% |
| !! | ACTTGGATGATGGAACCCAA+AGG | - | 50598:9639-9658 | None:intergenic | 45.0% |
| !! | CTTATCACTGATTCACCGGA+TGG | - | 50598:11852-11871 | None:intergenic | 45.0% |
| !! | GGAAGTCTTTCTTTTCTGGC+AGG | + | 50598:10110-10129 | MS.gene072600:CDS | 45.0% |
| !! | TCACCACCCTTTTTCGCATT+AGG | - | 50598:10391-10410 | None:intergenic | 45.0% |
| !!! | GGTGGTGAATTGGTTTTTGG+TGG | + | 50598:10403-10422 | MS.gene072600:CDS | 45.0% |
| ATTAGATTGATCCCGGCGGA+TGG | - | 50598:11298-11317 | None:intergenic | 50.0% | |
| CAAAGGAGAAGGAAGGAAGC+AGG | - | 50598:9381-9400 | None:intergenic | 50.0% | |
| CCGCTTGCATTTCCACTCTT+TGG | + | 50598:11199-11218 | MS.gene072600:intron | 50.0% | |
| CTCCTTCAGCTCCAATAGCA+TGG | - | 50598:11040-11059 | None:intergenic | 50.0% | |
| CTGCTTCCTTCCTTCTCCTT+TGG | + | 50598:9379-9398 | MS.gene072600:CDS | 50.0% | |
| GACCTGTGTAATGCCTTCTC+CGG | - | 50598:12112-12131 | None:intergenic | 50.0% | |
| GACTACGGAAACCTCCAAGT+TGG | + | 50598:12396-12415 | MS.gene072600:CDS | 50.0% | |
| GAGAGTCTTCCAAGTCCATC+CGG | + | 50598:11834-11853 | MS.gene072600:CDS | 50.0% | |
| GGAAGCTTACCCCTGATACT+AGG | - | 50598:11121-11140 | None:intergenic | 50.0% | |
| TCCGCCGGGATCAATCTAAT+AGG | + | 50598:11298-11317 | MS.gene072600:CDS | 50.0% | |
| TCCTCACACCAGAACAGGTT+CGG | + | 50598:11931-11950 | MS.gene072600:intron | 50.0% | |
| TGGTTTATGTTCCATCCGCC+GGG | + | 50598:11284-11303 | MS.gene072600:CDS | 50.0% | |
| TGTTCTGGTGTGAGGACGAA+GGG | - | 50598:11927-11946 | None:intergenic | 50.0% | |
| TTCATTGAGGCTACCCGAGA+AGG | + | 50598:10089-10108 | MS.gene072600:CDS | 50.0% | |
| ! | ACTGATTCACCGGATGGACT+TGG | - | 50598:11846-11865 | None:intergenic | 50.0% |
| ! | AGGTACTGTAGCTTCATCGC+TGG | - | 50598:9521-9540 | None:intergenic | 50.0% |
| ! | GGGTTTGTTTCCGATCGTGA+AGG | - | 50598:11907-11926 | None:intergenic | 50.0% |
| ! | TGTGCTGCTATTGTGGACTC+AGG | + | 50598:10888-10907 | MS.gene072600:CDS | 50.0% |
| !! | AACCGGAGAAGGCATTACAC+AGG | + | 50598:12107-12126 | MS.gene072600:CDS | 50.0% |
| !! | GGATGATGGAACCCAAAGGT+TGG | - | 50598:9635-9654 | None:intergenic | 50.0% |
| CTGTTCTGGTGTGAGGACGA+AGG | - | 50598:11928-11947 | None:intergenic | 55.0% | |
| CTTCGTCCTCACACCAGAAC+AGG | + | 50598:11926-11945 | MS.gene072600:CDS | 55.0% | |
| TACCAGAGTGGACCCTTTGG+AGG | - | 50598:12168-12187 | None:intergenic | 55.0% | |
| TCCGAACCTGTTCTGGTGTG+AGG | - | 50598:11935-11954 | None:intergenic | 55.0% | |
| ! | AGGTGGCTGTGCTGCTATTG+TGG | + | 50598:10881-10900 | MS.gene072600:CDS | 55.0% |
| ! | TGGCAGTGCTGGGATTGAGA+TGG | + | 50598:11561-11580 | MS.gene072600:intron | 55.0% |
| CTCCTCCAAAGGGTCCACTC+TGG | + | 50598:12163-12182 | MS.gene072600:CDS | 60.0% | |
| ! | CAGAGTGGACCCTTTGGAGG+AGG | - | 50598:12165-12184 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 50598 | gene | 9325 | 12437 | 9325 | ID=MS.gene072600 |
| 50598 | mRNA | 9325 | 12437 | 9325 | ID=MS.gene072600.t1;Parent=MS.gene072600 |
| 50598 | exon | 9325 | 9669 | 9325 | ID=MS.gene072600.t1.exon1;Parent=MS.gene072600.t1 |
| 50598 | CDS | 9325 | 9669 | 9325 | ID=cds.MS.gene072600.t1;Parent=MS.gene072600.t1 |
| 50598 | exon | 9764 | 9824 | 9764 | ID=MS.gene072600.t1.exon2;Parent=MS.gene072600.t1 |
| 50598 | CDS | 9764 | 9824 | 9764 | ID=cds.MS.gene072600.t1;Parent=MS.gene072600.t1 |
| 50598 | exon | 9905 | 9999 | 9905 | ID=MS.gene072600.t1.exon3;Parent=MS.gene072600.t1 |
| 50598 | CDS | 9905 | 9999 | 9905 | ID=cds.MS.gene072600.t1;Parent=MS.gene072600.t1 |
| 50598 | exon | 10086 | 10198 | 10086 | ID=MS.gene072600.t1.exon4;Parent=MS.gene072600.t1 |
| 50598 | CDS | 10086 | 10198 | 10086 | ID=cds.MS.gene072600.t1;Parent=MS.gene072600.t1 |
| 50598 | exon | 10324 | 10492 | 10324 | ID=MS.gene072600.t1.exon5;Parent=MS.gene072600.t1 |
| 50598 | CDS | 10324 | 10492 | 10324 | ID=cds.MS.gene072600.t1;Parent=MS.gene072600.t1 |
| 50598 | exon | 10577 | 10616 | 10577 | ID=MS.gene072600.t1.exon6;Parent=MS.gene072600.t1 |
| 50598 | CDS | 10577 | 10616 | 10577 | ID=cds.MS.gene072600.t1;Parent=MS.gene072600.t1 |
| 50598 | exon | 10871 | 10935 | 10871 | ID=MS.gene072600.t1.exon7;Parent=MS.gene072600.t1 |
| 50598 | CDS | 10871 | 10935 | 10871 | ID=cds.MS.gene072600.t1;Parent=MS.gene072600.t1 |
| 50598 | exon | 11017 | 11130 | 11017 | ID=MS.gene072600.t1.exon8;Parent=MS.gene072600.t1 |
| 50598 | CDS | 11017 | 11130 | 11017 | ID=cds.MS.gene072600.t1;Parent=MS.gene072600.t1 |
| 50598 | exon | 11255 | 11319 | 11255 | ID=MS.gene072600.t1.exon9;Parent=MS.gene072600.t1 |
| 50598 | CDS | 11255 | 11319 | 11255 | ID=cds.MS.gene072600.t1;Parent=MS.gene072600.t1 |
| 50598 | exon | 11567 | 11720 | 11567 | ID=MS.gene072600.t1.exon10;Parent=MS.gene072600.t1 |
| 50598 | CDS | 11567 | 11720 | 11567 | ID=cds.MS.gene072600.t1;Parent=MS.gene072600.t1 |
| 50598 | exon | 11828 | 11947 | 11828 | ID=MS.gene072600.t1.exon11;Parent=MS.gene072600.t1 |
| 50598 | CDS | 11828 | 11947 | 11828 | ID=cds.MS.gene072600.t1;Parent=MS.gene072600.t1 |
| 50598 | exon | 12096 | 12184 | 12096 | ID=MS.gene072600.t1.exon12;Parent=MS.gene072600.t1 |
| 50598 | CDS | 12096 | 12184 | 12096 | ID=cds.MS.gene072600.t1;Parent=MS.gene072600.t1 |
| 50598 | exon | 12353 | 12437 | 12353 | ID=MS.gene072600.t1.exon13;Parent=MS.gene072600.t1 |
| 50598 | CDS | 12353 | 12437 | 12353 | ID=cds.MS.gene072600.t1;Parent=MS.gene072600.t1 |
| Gene Sequence |
| Protein sequence |
