Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072615.t1 | XP_003626104.2 | 86.5 | 1285 | 7 | 1 | 1 | 1118 | 45 | 1329 | 0.00E+00 | 2032.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072615.t1 | Q54K14 | 21.4 | 972 | 538 | 30 | 41 | 947 | 229 | 1039 | 4.1e-31 | 138.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072615.t1 | G7KVH9 | 86.5 | 1285 | 7 | 1 | 1 | 1118 | 45 | 1329 | 0.0e+00 | 2032.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049180 | MS.gene072615 | 0.827811 | 1.27E-54 | -1.69E-46 |
| MS.gene050817 | MS.gene072615 | 0.847734 | 9.59E-60 | -1.69E-46 |
| MS.gene050818 | MS.gene072615 | 0.869979 | 2.06E-66 | -1.69E-46 |
| MS.gene050894 | MS.gene072615 | 0.831206 | 1.90E-55 | -1.69E-46 |
| MS.gene055719 | MS.gene072615 | 0.802478 | 5.50E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072615.t1 | MTR_7g111080 | 99.537 | 1081 | 5 | 0 | 1 | 1081 | 45 | 1125 | 0.0 | 2213 |
| MS.gene072615.t1 | MTR_7g111080 | 92.308 | 39 | 3 | 0 | 1080 | 1118 | 1291 | 1329 | 1.02e-14 | 79.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072615.t1 | AT5G24710 | 82.196 | 1084 | 179 | 5 | 1 | 1081 | 45 | 1117 | 0.0 | 1783 |
Find 289 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATACCCTCAGTTTCTTATT+AGG | 0.146986 | 7.4:+5028128 | None:intergenic |
| CCTGCCACAGTGTGGCTTCT+TGG | 0.158323 | 7.4:-5028408 | MS.gene072615:CDS |
| ATGGGACACGGTCTCCTTTA+AGG | 0.178355 | 7.4:-5028556 | MS.gene072615:intron |
| TCATATGTTTGCAGGTATTT+AGG | 0.198111 | 7.4:-5026787 | MS.gene072615:intron |
| TTTCAGGCTCTTCTGGTTTC+GGG | 0.211472 | 7.4:-5029066 | MS.gene072615:intron |
| ACACTGTGGCAGGCCAATTT+TGG | 0.221087 | 7.4:+5028418 | None:intergenic |
| GGTTGGGTTTCAGGCTCTTC+TGG | 0.223591 | 7.4:-5029073 | MS.gene072615:intron |
| GTGATGGATTGCTCATAATT+TGG | 0.228382 | 7.4:-5029038 | MS.gene072615:CDS |
| CAGCCACATCTTGTTGCTAT+TGG | 0.232135 | 7.4:-5027736 | MS.gene072615:CDS |
| GTTTCAGGCTCTTCTGGTTT+CGG | 0.246787 | 7.4:-5029067 | MS.gene072615:intron |
| GAAATTCGCAAAAGAGTTCT+TGG | 0.260127 | 7.4:-5020817 | MS.gene072615:CDS |
| GTTCTTTCTGTGAGCAGTTC+AGG | 0.263386 | 7.4:-5027430 | MS.gene072615:CDS |
| TGGTCCCAAGCAGTCCATTC+TGG | 0.264020 | 7.4:+5024437 | None:intergenic |
| GACGGTCCTCTTGTGGCTTT+TGG | 0.273073 | 7.4:-5029674 | MS.gene072615:CDS |
| GAACTACCCTTGGGAATTAT+AGG | 0.279913 | 7.4:+5026619 | None:intergenic |
| ATACCCTCAGTTTCTTATTA+GGG | 0.283891 | 7.4:+5028129 | None:intergenic |
| TATAAAGCCAGTTCCAAAAT+TGG | 0.291327 | 7.4:-5028431 | MS.gene072615:CDS |
| GCAGCAGCTGCAGCTGCTGC+TGG | 0.294264 | 7.4:-5026559 | MS.gene072615:CDS |
| CAGATAAGACATTAGCTATA+TGG | 0.304586 | 7.4:-5028575 | MS.gene072615:CDS |
| TGTCGATGTCTTGCTGCTTA+TGG | 0.312448 | 7.4:-5021340 | MS.gene072615:CDS |
| CTCTTGCTTGAAGTCCTTCA+TGG | 0.315401 | 7.4:-5029498 | MS.gene072615:CDS |
| ATGAGTAATAGCCGGGATAT+TGG | 0.317519 | 7.4:-5020948 | MS.gene072615:CDS |
| AGATGTAGTTGAAGGTGTTC+AGG | 0.321407 | 7.4:-5020847 | MS.gene072615:CDS |
| CCATCAGCTCTAGATTGTTT+TGG | 0.325688 | 7.4:+5022378 | None:intergenic |
| CTGCAGGCTGGAGTTTGATT+TGG | 0.329519 | 7.4:-5021018 | MS.gene072615:intron |
| GATATTGGGCATGATGGTAC+TGG | 0.335370 | 7.4:-5020933 | MS.gene072615:CDS |
| AAGTCCTTCATGGCAGCTTC+AGG | 0.343158 | 7.4:-5029488 | MS.gene072615:CDS |
| TCGTGACAGATTTGCTATAC+TGG | 0.343161 | 7.4:-5026665 | MS.gene072615:CDS |
| GTTGCTATTGGAACCAATAT+TGG | 0.343576 | 7.4:-5027724 | MS.gene072615:CDS |
| GAGGGTACTGTAGTTGGATT+TGG | 0.345443 | 7.4:+5018234 | None:intergenic |
| AGCACCAATACATACCTTAA+AGG | 0.347234 | 7.4:+5028542 | None:intergenic |
| GCAGATAACAACACCAATAT+TGG | 0.347249 | 7.4:+5027711 | None:intergenic |
| GCTGCAGCTGGATCAGTTAA+AGG | 0.351981 | 7.4:-5020729 | MS.gene072615:CDS |
| TTTCCCTGCTTGACAGGTAA+TGG | 0.353036 | 7.4:+5027493 | None:intergenic |
| TTCATTTCAGCATGCTCCTT+CGG | 0.357916 | 7.4:-5022421 | MS.gene072615:CDS |
| ATCCAGTCTATGCCATTATC+AGG | 0.369025 | 7.4:-5025716 | MS.gene072615:CDS |
| GAGAAAGCATGGCAGGATAC+TGG | 0.378910 | 7.4:-5018938 | MS.gene072615:CDS |
| CAGAAGAAAGAATATCATTA+AGG | 0.380973 | 7.4:-5023172 | MS.gene072615:CDS |
| AAGATATGACTATGTATTGT+TGG | 0.384764 | 7.4:+5024387 | None:intergenic |
| ACAGAAAAGTAAGGAATATC+TGG | 0.385954 | 7.4:+5026754 | None:intergenic |
| GGGCATGATGGTACTGGGCT+GGG | 0.386850 | 7.4:-5020927 | MS.gene072615:CDS |
| AACAGCTCCTTGTCAGAAAC+AGG | 0.388078 | 7.4:-5027541 | MS.gene072615:CDS |
| TTCCATCATCCAACATAATT+CGG | 0.388734 | 7.4:+5026515 | None:intergenic |
| ACACACCTCTTTGATATTCC+AGG | 0.390212 | 7.4:+5021123 | None:intergenic |
| TGAGTAATAGCCGGGATATT+GGG | 0.392245 | 7.4:-5020947 | MS.gene072615:CDS |
| GGCACATGACGGCGGGGTTG+TGG | 0.393623 | 7.4:-5028652 | MS.gene072615:CDS |
| ACCACAACAAGAGGCCCAAC+CGG | 0.393627 | 7.4:+5022246 | None:intergenic |
| ATGATGATGATGTACGCTTT+TGG | 0.400842 | 7.4:-5032732 | MS.gene072615:CDS |
| CTCAAAACTTCCAGCTATAC+AGG | 0.400917 | 7.4:-5025613 | MS.gene072615:intron |
| CTGCTTCCATAACCTGATAA+TGG | 0.403037 | 7.4:+5025704 | None:intergenic |
| TTGCATGGAGGGGCACTGCT+TGG | 0.403387 | 7.4:-5025797 | MS.gene072615:CDS |
| GGGGTAGGTAGGGGAGCAAC+AGG | 0.404564 | 7.4:+5027664 | None:intergenic |
| TGGGCATGATGGTACTGGGC+TGG | 0.409083 | 7.4:-5020928 | MS.gene072615:CDS |
| TCTATGCCATTATCAGGTTA+TGG | 0.412474 | 7.4:-5025710 | MS.gene072615:CDS |
| CTGCTGTATTTGTAATAGAA+AGG | 0.412544 | 7.4:-5027621 | MS.gene072615:CDS |
| AGCACAATTTATGCTAGGAA+TGG | 0.416057 | 7.4:-5021172 | MS.gene072615:CDS |
| ATAAATTTCACCTGTATAGC+TGG | 0.418298 | 7.4:+5025603 | None:intergenic |
| GCACCGGAGGCAACTGTTTG+TGG | 0.418498 | 7.4:-5024300 | MS.gene072615:CDS |
| CACCAACGCCAGATCTATAA+AGG | 0.419157 | 7.4:+5029696 | None:intergenic |
| AGGTCATTGGTTTGCATGGA+GGG | 0.419161 | 7.4:-5025808 | MS.gene072615:CDS |
| CTTTCTTCTGTAGTAGATTG+AGG | 0.420013 | 7.4:+5023185 | None:intergenic |
| GAGCTGATGGTGACGACTCT+TGG | 0.422531 | 7.4:-5022365 | MS.gene072615:CDS |
| TCTTGTTGTGGTCGGTGTTA+AGG | 0.425751 | 7.4:-5022235 | MS.gene072615:CDS |
| ATGGAGTTCCTTTATAGATC+TGG | 0.426366 | 7.4:-5029704 | MS.gene072615:CDS |
| GCATTGCGCCTTGCAAATCA+TGG | 0.426731 | 7.4:-5020675 | MS.gene072615:CDS |
| GAAATAGCTGTAGCAGCAAT+AGG | 0.426838 | 7.4:+5025743 | None:intergenic |
| ACGGTTAGTCGGCGCAAAAT+TGG | 0.427146 | 7.4:-5033915 | MS.gene072615:CDS |
| TTGTTATCAAGCTCTTGCTT+TGG | 0.427944 | 7.4:+5032544 | None:intergenic |
| AACCTAATCACGCTTGGCTT+GGG | 0.431062 | 7.4:-5019010 | MS.gene072615:CDS |
| CCCTCCTGAGGCCCCGTCAC+CGG | 0.431121 | 7.4:-5018283 | MS.gene072615:CDS |
| AAATCTCTGCTACCGGTGAC+GGG | 0.432240 | 7.4:+5018271 | None:intergenic |
| CATATGCGACTAGTGCTGTT+TGG | 0.432824 | 7.4:-5024322 | MS.gene072615:CDS |
| GTGTTAAGGATGGAGTTCTT+TGG | 0.432851 | 7.4:-5022221 | MS.gene072615:CDS |
| ATTCCATGCAGCTTGCTAGA+AGG | 0.434384 | 7.4:-5029547 | MS.gene072615:intron |
| CAACCTAATCACGCTTGGCT+TGG | 0.434812 | 7.4:-5019011 | MS.gene072615:CDS |
| CCACTTGAGGGTACTGTAGT+TGG | 0.436429 | 7.4:+5018228 | None:intergenic |
| ACCGGTGACGGGGCCTCAGG+AGG | 0.438107 | 7.4:+5018282 | None:intergenic |
| CTGTCTACAAGGTCAGTGAT+TGG | 0.439179 | 7.4:-5026735 | MS.gene072615:CDS |
| GCAGGTATTTAGGAATCGTT+TGG | 0.439695 | 7.4:-5026777 | MS.gene072615:intron |
| GACGGGGCCTCAGGAGGGGC+AGG | 0.443429 | 7.4:+5018288 | None:intergenic |
| CTCAGCCAGAATGGACTGCT+TGG | 0.443742 | 7.4:-5024442 | MS.gene072615:CDS |
| TGCTTCTTTCCCTGCTTGAC+AGG | 0.446324 | 7.4:+5027487 | None:intergenic |
| GAGTATGAATCATGAGGAAC+AGG | 0.446528 | 7.4:+5027454 | None:intergenic |
| CTGGTTTCGGGTGCTAGTGA+TGG | 0.447641 | 7.4:-5029054 | MS.gene072615:CDS |
| GAGTTCTTTGGCTAATTGAC+AGG | 0.448045 | 7.4:-5022209 | MS.gene072615:intron |
| GCTACCGGTGACGGGGCCTC+AGG | 0.449314 | 7.4:+5018279 | None:intergenic |
| GCACAATTTATGCTAGGAAT+GGG | 0.449349 | 7.4:-5021171 | MS.gene072615:CDS |
| ACTATCTGATGGGGTAGGTA+GGG | 0.449390 | 7.4:+5027654 | None:intergenic |
| ATGCTGTTAGTGCAGTAAAA+TGG | 0.453501 | 7.4:-5021315 | MS.gene072615:intron |
| AAGACATCGACAGCGAATAC+CGG | 0.456528 | 7.4:+5021351 | None:intergenic |
| GTCCCAAGCCAAGCGTGATT+AGG | 0.457067 | 7.4:+5019008 | None:intergenic |
| TGGGAGACATTTCAGCCTGT+GGG | 0.458762 | 7.4:-5024476 | MS.gene072615:CDS |
| TGTAGTTGGATTTGGAGTAT+TGG | 0.459987 | 7.4:+5018242 | None:intergenic |
| ACGGAAGCACTTCATTTGCC+TGG | 0.463828 | 7.4:-5021141 | MS.gene072615:CDS |
| AAGCACAATACTCGACGGTT+TGG | 0.466091 | 7.4:+5024417 | None:intergenic |
| AGGTACACTGGAGGTCATAA+AGG | 0.466461 | 7.4:-5029527 | MS.gene072615:CDS |
| CTGAAGAGGTTAGCTGCAGC+TGG | 0.467189 | 7.4:-5020741 | MS.gene072615:CDS |
| TTTGCTGCAGGTGTATTGTA+TGG | 0.469308 | 7.4:-5027773 | MS.gene072615:intron |
| TTGGCTCTAATTACAGTTGA+AGG | 0.469878 | 7.4:-5023209 | MS.gene072615:CDS |
| CCGGTGACGGGGCCTCAGGA+GGG | 0.470337 | 7.4:+5018283 | None:intergenic |
| TGCTGTATTTGTAATAGAAA+GGG | 0.471695 | 7.4:-5027620 | MS.gene072615:CDS |
| AGATAAGACATTAGCTATAT+GGG | 0.473469 | 7.4:-5028574 | MS.gene072615:CDS |
| TCTCCTGCCCCATCAACAAA+AGG | 0.473766 | 7.4:-5032643 | MS.gene072615:CDS |
| CCTCCACGAATGGCTTCTGT+CGG | 0.473800 | 7.4:+5032864 | None:intergenic |
| CTTTACAAGGTCATGAATTG+AGG | 0.474786 | 7.4:-5020704 | MS.gene072615:CDS |
| GCTCCTCAGCTAATTACAAT+TGG | 0.477705 | 7.4:-5028600 | MS.gene072615:CDS |
| TGACACAGGTTAGAATATCA+AGG | 0.478884 | 7.4:+5028365 | None:intergenic |
| CGCTGCAGATGCTACAGCAC+AGG | 0.479021 | 7.4:-5020784 | MS.gene072615:CDS |
| CCTATTCTAGGTGGTTCGAT+TGG | 0.479406 | 7.4:-5022445 | MS.gene072615:intron |
| CTCGCCTTGAAGTGTTAAGC+AGG | 0.480293 | 7.4:-5032764 | MS.gene072615:intron |
| TTGGGAGACATTTCAGCCTG+TGG | 0.480746 | 7.4:-5024477 | MS.gene072615:CDS |
| CTCTACTTCCTCAGCCAGAA+TGG | 0.481221 | 7.4:-5024451 | MS.gene072615:CDS |
| CTCCCAGGTATCTATATTGT+GGG | 0.482317 | 7.4:+5024357 | None:intergenic |
| TACTATCTGATGGGGTAGGT+AGG | 0.482921 | 7.4:+5027653 | None:intergenic |
| CCAAGAAGCCACACTGTGGC+AGG | 0.482982 | 7.4:+5028408 | None:intergenic |
| CTATCTGATGGGGTAGGTAG+GGG | 0.484183 | 7.4:+5027655 | None:intergenic |
| GCATCTAGGCACATGACGGC+GGG | 0.484753 | 7.4:-5028659 | MS.gene072615:intron |
| GAAGTGCCAGGCTTCTCGCA+TGG | 0.485066 | 7.4:-5026696 | MS.gene072615:CDS |
| TCCGGTTGGGCCTCTTGTTG+TGG | 0.485814 | 7.4:-5022247 | MS.gene072615:CDS |
| GTAGGTAGGGGAGCAACAGG+TGG | 0.488754 | 7.4:+5027667 | None:intergenic |
| TGGAGCAGAAACGTCCGGTT+GGG | 0.489410 | 7.4:-5022260 | MS.gene072615:CDS |
| AAAATCTCTGCTACCGGTGA+CGG | 0.492898 | 7.4:+5018270 | None:intergenic |
| TGAACCATTACCTGTCAAGC+AGG | 0.494460 | 7.4:-5027497 | MS.gene072615:CDS |
| AGTTGAGCTTTCTAGAGTGA+TGG | 0.494949 | 7.4:-5028628 | MS.gene072615:CDS |
| TCAGCCAGAATGGACTGCTT+GGG | 0.494971 | 7.4:-5024441 | MS.gene072615:CDS |
| TGTTCAAGTCCGAATTATGT+TGG | 0.495823 | 7.4:-5026524 | MS.gene072615:CDS |
| TGATTAAAACTTACCAGTGT+AGG | 0.497295 | 7.4:+5032518 | None:intergenic |
| GGTCATTGGTTTGCATGGAG+GGG | 0.497803 | 7.4:-5025807 | MS.gene072615:CDS |
| GATGTAGTTGAAGGTGTTCA+GGG | 0.498781 | 7.4:-5020846 | MS.gene072615:CDS |
| TCAAACAGGGCAAGTAGGCT+TGG | 0.498847 | 7.4:-5021216 | MS.gene072615:intron |
| TATAGATCTGGCGTTGGTGA+CGG | 0.499135 | 7.4:-5029692 | MS.gene072615:CDS |
| TAATCGTTCTGCAGCGGCAG+AGG | 0.499251 | 7.4:-5032698 | MS.gene072615:CDS |
| ATAAACAACCTAATCACGCT+TGG | 0.500648 | 7.4:-5019016 | MS.gene072615:CDS |
| TTCTTACCATGAGTAATAGC+CGG | 0.503075 | 7.4:-5020956 | MS.gene072615:CDS |
| TCTTACCATGAGTAATAGCC+GGG | 0.504763 | 7.4:-5020955 | MS.gene072615:CDS |
| AAGCTTGCTGAGGGAGAAAG+AGG | 0.505414 | 7.4:-5033890 | MS.gene072615:intron |
| CAAACAGCACTAGTCGCATA+TGG | 0.507974 | 7.4:+5024323 | None:intergenic |
| TAGGAAAGGGTCACCACTTG+AGG | 0.509538 | 7.4:+5018215 | None:intergenic |
| CCACATATTCTGCTCTCACT+AGG | 0.510622 | 7.4:-5028196 | MS.gene072615:CDS |
| GAATGCTCTCTACTATCTGA+TGG | 0.512710 | 7.4:+5027643 | None:intergenic |
| ATAATTTGGAGTGCTGATCA+TGG | 0.513470 | 7.4:-5029024 | MS.gene072615:CDS |
| GTCCGAATTATGTTGGATGA+TGG | 0.513836 | 7.4:-5026517 | MS.gene072615:CDS |
| GTCTCTAAAATCTCTGCTAC+CGG | 0.514615 | 7.4:+5018264 | None:intergenic |
| CGGTGACGGGGCCTCAGGAG+GGG | 0.516592 | 7.4:+5018284 | None:intergenic |
| TCTTTCAATGATTACATGGA+AGG | 0.517791 | 7.4:-5029627 | MS.gene072615:intron |
| ATGGTTCAAAAGCATCTCCC+TGG | 0.518104 | 7.4:+5027512 | None:intergenic |
| GAACATCAAATATGCTAATG+AGG | 0.519478 | 7.4:-5026495 | MS.gene072615:CDS |
| AGCCGGGATATTGGGCATGA+TGG | 0.521395 | 7.4:-5020939 | MS.gene072615:CDS |
| CAGGTTAGAATATCAAGGTT+CGG | 0.521517 | 7.4:+5028370 | None:intergenic |
| GAAATAGCGGTTGGTGGAGG+AGG | 0.521857 | 7.4:-5022312 | MS.gene072615:CDS |
| CTCGCCTGAAGCTGCCATGA+AGG | 0.523060 | 7.4:+5029484 | None:intergenic |
| CGACTAGTGCTGTTTGGCAC+CGG | 0.523385 | 7.4:-5024316 | MS.gene072615:CDS |
| TCTCCCAGGTATCTATATTG+TGG | 0.523820 | 7.4:+5024356 | None:intergenic |
| AGTATCCCATGCGAGAAGCC+TGG | 0.523887 | 7.4:+5026690 | None:intergenic |
| CTAACCTCTTCAGAGCTTCA+CGG | 0.524329 | 7.4:+5020751 | None:intergenic |
| GAGCTGTTATTTCCGAGTGA+TGG | 0.524352 | 7.4:+5027556 | None:intergenic |
| GGGTCTTCCTGTTTCTGACA+AGG | 0.524676 | 7.4:+5027534 | None:intergenic |
| GATGCTTACTCAATAGTAGT+TGG | 0.524936 | 7.4:+5024272 | None:intergenic |
| AGACATCGACAGCGAATACC+GGG | 0.525157 | 7.4:+5021352 | None:intergenic |
| GTTGAGCTTTCTAGAGTGAT+GGG | 0.525416 | 7.4:-5028627 | MS.gene072615:CDS |
| GAGTTCTTTCAATGATTACA+TGG | 0.526385 | 7.4:-5029631 | MS.gene072615:CDS |
| TCAGTTAAAGGTGCTTTACA+AGG | 0.528069 | 7.4:-5020717 | MS.gene072615:CDS |
| GCGCCCACAATATAGATACC+TGG | 0.528122 | 7.4:-5024360 | MS.gene072615:CDS |
| CCTAGTGAGAGCAGAATATG+TGG | 0.528222 | 7.4:+5028196 | None:intergenic |
| GATTTAGCACAATTTATGCT+AGG | 0.528425 | 7.4:-5021177 | MS.gene072615:CDS |
| TTGTTGACTCTGGAAGTGCC+AGG | 0.529575 | 7.4:-5026708 | MS.gene072615:CDS |
| TAGGTCATTGGTTTGCATGG+AGG | 0.530097 | 7.4:-5025809 | MS.gene072615:CDS |
| CCAAAACAATCTAGAGCTGA+TGG | 0.530123 | 7.4:-5022378 | MS.gene072615:CDS |
| TCCGATGGAGCAGAAACGTC+CGG | 0.531504 | 7.4:-5022265 | MS.gene072615:CDS |
| TTGCCACAAACAGTTGCCTC+CGG | 0.540164 | 7.4:+5024297 | None:intergenic |
| TACCATCATGCCCAATATCC+CGG | 0.540393 | 7.4:+5020937 | None:intergenic |
| TCGAATTCCTATAATTCCCA+AGG | 0.540450 | 7.4:-5026626 | MS.gene072615:CDS |
| ATGGCAGGATACTGGAATGA+TGG | 0.541037 | 7.4:-5018930 | MS.gene072615:CDS |
| ACCGGACGTTTCTGCTCCAT+CGG | 0.542874 | 7.4:+5022264 | None:intergenic |
| AACCTGATAATGGCATAGAC+TGG | 0.543681 | 7.4:+5025714 | None:intergenic |
| ATTAAGGCCACCGATGCTGC+AGG | 0.544573 | 7.4:-5023156 | MS.gene072615:intron |
| ATATTGGGCATGATGGTACT+GGG | 0.545565 | 7.4:-5020932 | MS.gene072615:CDS |
| AGTGAAATAGCGGTTGGTGG+AGG | 0.545934 | 7.4:-5022315 | MS.gene072615:CDS |
| GCCTTATCTTTGAGTCATCC+CGG | 0.546193 | 7.4:-5021370 | MS.gene072615:CDS |
| AATATCAGAGCATGGAGAGT+TGG | 0.549147 | 7.4:-5023228 | MS.gene072615:CDS |
| TGGTTCAAAAGCATCTCCCT+GGG | 0.549450 | 7.4:+5027513 | None:intergenic |
| TAATCACGCTTGGCTTGGGA+CGG | 0.550062 | 7.4:-5019006 | MS.gene072615:CDS |
| TTGGGAATTATAGGAATTCG+AGG | 0.550363 | 7.4:+5026628 | None:intergenic |
| GGGAGACATTTCAGCCTGTG+GGG | 0.550620 | 7.4:-5024475 | MS.gene072615:CDS |
| CAAGCAGTCCATTCTGGCTG+AGG | 0.551410 | 7.4:+5024443 | None:intergenic |
| CTCCTGCCCCATCAACAAAA+GGG | 0.552691 | 7.4:-5032642 | MS.gene072615:CDS |
| GATAGGAAAGGTGGCACCGA+AGG | 0.552730 | 7.4:+5022405 | None:intergenic |
| CGTTGGTGACGGTCCTCTTG+TGG | 0.553165 | 7.4:-5029681 | MS.gene072615:CDS |
| AAGTGATCCTGCCCCTCCTG+AGG | 0.554131 | 7.4:-5018295 | MS.gene072615:CDS |
| GGAGACATTTCAGCCTGTGG+GGG | 0.556776 | 7.4:-5024474 | MS.gene072615:CDS |
| AAGTGCCAGGCTTCTCGCAT+GGG | 0.557808 | 7.4:-5026695 | MS.gene072615:CDS |
| GGTATTCCAATCATAGGAAA+GGG | 0.558357 | 7.4:+5018202 | None:intergenic |
| GTCAGAAACAGGAAGACCCC+AGG | 0.560823 | 7.4:-5027530 | MS.gene072615:CDS |
| TACCCTCAGTTTCTTATTAG+GGG | 0.561419 | 7.4:+5028130 | None:intergenic |
| GCTAGGAATGGGCTATGCTA+CGG | 0.562069 | 7.4:-5021160 | MS.gene072615:CDS |
| ATGGAGCAGAAACGTCCGGT+TGG | 0.563286 | 7.4:-5022261 | MS.gene072615:CDS |
| CAGAAGCCATTCGTGGAGGA+AGG | 0.564143 | 7.4:-5032860 | MS.gene072615:intron |
| AATGCTCTCTACTATCTGAT+GGG | 0.564934 | 7.4:+5027644 | None:intergenic |
| CAAATCATGGAGAGTTGACT+CGG | 0.565410 | 7.4:-5020662 | MS.gene072615:CDS |
| TAACCTCTTCAGAGCTTCAC+GGG | 0.567211 | 7.4:+5020752 | None:intergenic |
| GTTGGGCCTCTTGTTGTGGT+CGG | 0.567755 | 7.4:-5022243 | MS.gene072615:CDS |
| ACAAGTGAAATAGCGGTTGG+TGG | 0.570809 | 7.4:-5022318 | MS.gene072615:CDS |
| AGGTATTCCAATCATAGGAA+AGG | 0.571131 | 7.4:+5018201 | None:intergenic |
| TCTAATGGAGAAAGCATGGC+AGG | 0.571254 | 7.4:-5018945 | MS.gene072615:CDS |
| TTCCTTTATAGATCTGGCGT+TGG | 0.572120 | 7.4:-5029698 | MS.gene072615:CDS |
| GTGATTTATGAGTTGAAAGC+TGG | 0.572534 | 7.4:-5033953 | MS.gene072615:CDS |
| ATACTACCTTCCTCCACGAA+TGG | 0.572835 | 7.4:+5032854 | None:intergenic |
| TGGTGGAGGAGGCGTGTCTG+TGG | 0.573140 | 7.4:-5022301 | MS.gene072615:CDS |
| AATCACGCTTGGCTTGGGAC+GGG | 0.574767 | 7.4:-5019005 | MS.gene072615:CDS |
| GATTAAAACTTACCAGTGTA+GGG | 0.574904 | 7.4:+5032519 | None:intergenic |
| TACGTGAGAATCTTTGACAC+AGG | 0.575126 | 7.4:+5028351 | None:intergenic |
| GATTCTCCTAGATGTTCGAT+AGG | 0.575353 | 7.4:+5025769 | None:intergenic |
| CGCCCACAATATAGATACCT+GGG | 0.576267 | 7.4:-5024359 | MS.gene072615:CDS |
| AAATAGATCTCCAGCTGAGG+CGG | 0.578862 | 7.4:-5025639 | MS.gene072615:CDS |
| CAGCTTGCTAGAAGGTACAC+TGG | 0.579852 | 7.4:-5029539 | MS.gene072615:CDS |
| AATATCCCGGCTATTACTCA+TGG | 0.580262 | 7.4:+5020950 | None:intergenic |
| TTTGGTAATGATAGGAAAGG+TGG | 0.581242 | 7.4:+5022396 | None:intergenic |
| TTTACAAGGTCATGAATTGA+GGG | 0.581412 | 7.4:-5020703 | MS.gene072615:CDS |
| GTGTCAAAGATTCTCACGTA+TGG | 0.581676 | 7.4:-5028348 | MS.gene072615:intron |
| CACGGCCACGCATCGTCACC+AGG | 0.582340 | 7.4:+5032572 | None:intergenic |
| CTAGTGCTGTTTGGCACCGG+AGG | 0.583399 | 7.4:-5024313 | MS.gene072615:CDS |
| GTTGTGGTCGGTGTTAAGGA+TGG | 0.585013 | 7.4:-5022231 | MS.gene072615:CDS |
| TTATTAGGGGCAAGAGCGTG+TGG | 0.585452 | 7.4:+5028143 | None:intergenic |
| AAACCGACAGAAGCCATTCG+TGG | 0.586570 | 7.4:-5032867 | MS.gene072615:CDS |
| ACCGGGATGACTCAAAGATA+AGG | 0.586920 | 7.4:+5021369 | None:intergenic |
| ATATCAAGGTTCGGAGCTCG+AGG | 0.588597 | 7.4:+5028379 | None:intergenic |
| GTTGATGAACGACGGTTAGT+CGG | 0.590306 | 7.4:-5033926 | MS.gene072615:CDS |
| GTGTTGCCTATCGAACATCT+AGG | 0.592674 | 7.4:-5025775 | MS.gene072615:CDS |
| TCAACTCTCCATGATTTGCA+AGG | 0.594298 | 7.4:+5020667 | None:intergenic |
| GATTGGTCGATTGTTGACTC+TGG | 0.594520 | 7.4:-5026718 | MS.gene072615:CDS |
| ATGCTCTAATGGAGAAAGCA+TGG | 0.596377 | 7.4:-5018949 | MS.gene072615:CDS |
| GGATACTGGAATGATGGCAG+AGG | 0.598475 | 7.4:-5018924 | MS.gene072615:CDS |
| ATTTATGAGTTGAAAGCTGG+TGG | 0.599574 | 7.4:-5033950 | MS.gene072615:CDS |
| TCTCTACTATCTGATGGGGT+AGG | 0.600544 | 7.4:+5027649 | None:intergenic |
| TTAACACCGACCACAACAAG+AGG | 0.603163 | 7.4:+5022237 | None:intergenic |
| TGCATCTAGGCACATGACGG+CGG | 0.607347 | 7.4:-5028660 | MS.gene072615:intron |
| AACTCTGTAAATCCATCACT+CGG | 0.608617 | 7.4:-5027568 | MS.gene072615:CDS |
| TTCAAATAGATCTCCAGCTG+AGG | 0.612307 | 7.4:-5025642 | MS.gene072615:CDS |
| TTGCCCGTGAAGCTCTGAAG+AGG | 0.612343 | 7.4:-5020755 | MS.gene072615:CDS |
| TGCCCCTAATAAGAAACTGA+GGG | 0.612486 | 7.4:-5028132 | MS.gene072615:intron |
| GAACCATTACCTGTCAAGCA+GGG | 0.614271 | 7.4:-5027496 | MS.gene072615:CDS |
| CTCTTGGACAAAAGAAGCAG+AGG | 0.614325 | 7.4:-5022349 | MS.gene072615:CDS |
| AAGACAAGTGAAATAGCGGT+TGG | 0.620679 | 7.4:-5022321 | MS.gene072615:CDS |
| AAATTGGAGAAGCTTGCTGA+GGG | 0.623355 | 7.4:-5033899 | MS.gene072615:CDS |
| GCTCTTGCTTTGGTACATCA+CGG | 0.624623 | 7.4:+5032554 | None:intergenic |
| TTGGACCTGGTGACGATGCG+TGG | 0.625252 | 7.4:-5032577 | MS.gene072615:CDS |
| ACAAGAGCAATATCAGAGCA+TGG | 0.626182 | 7.4:-5023236 | MS.gene072615:CDS |
| ACCTTGTAGACAGAAAAGTA+AGG | 0.629590 | 7.4:+5026745 | None:intergenic |
| GATGCACCAAAAGCCACAAG+AGG | 0.631832 | 7.4:+5029668 | None:intergenic |
| AATCTCTGCTACCGGTGACG+GGG | 0.634101 | 7.4:+5018272 | None:intergenic |
| TTGCCCCTAATAAGAAACTG+AGG | 0.636362 | 7.4:-5028133 | MS.gene072615:CDS |
| AAAATTGGAGAAGCTTGCTG+AGG | 0.636362 | 7.4:-5033900 | MS.gene072615:CDS |
| ATTTGCCTGGAATATCAAAG+AGG | 0.636615 | 7.4:-5021128 | MS.gene072615:intron |
| TTGGCATAATCGTTCTGCAG+CGG | 0.637479 | 7.4:-5032704 | MS.gene072615:CDS |
| ATGGAATTGAAACATCTCCC+AGG | 0.638441 | 7.4:+5024342 | None:intergenic |
| AGGAAAGGGTCACCACTTGA+GGG | 0.639433 | 7.4:+5018216 | None:intergenic |
| AATATGCTAATGAGGTCTGT+TGG | 0.639966 | 7.4:-5026487 | MS.gene072615:CDS |
| GCGCCAATTGTAATTAGCTG+AGG | 0.640157 | 7.4:+5028597 | None:intergenic |
| ATGCTCTCTACTATCTGATG+GGG | 0.640747 | 7.4:+5027645 | None:intergenic |
| GAGAAAGACAAGTGAAATAG+CGG | 0.642053 | 7.4:-5022325 | MS.gene072615:CDS |
| CGAATTCCTATAATTCCCAA+GGG | 0.646378 | 7.4:-5026625 | MS.gene072615:CDS |
| CAAGGTTCGGAGCTCGAGGG+TGG | 0.647667 | 7.4:+5028383 | None:intergenic |
| AGAACTGAGTATGAATCATG+AGG | 0.648295 | 7.4:+5027448 | None:intergenic |
| GCTGAAGTATGTACAGCTGT+TGG | 0.649234 | 7.4:+5032673 | None:intergenic |
| CCAACTACAGTACCCTCAAG+TGG | 0.649387 | 7.4:-5018228 | MS.gene072615:CDS |
| GTTCCAATAGCAACAAGATG+TGG | 0.650417 | 7.4:+5027733 | None:intergenic |
| CTTCATGGCAGCTTCAGGCG+AGG | 0.650772 | 7.4:-5029483 | MS.gene072615:intron |
| GCTGCAGATGCTACAGCACA+GGG | 0.652461 | 7.4:-5020783 | MS.gene072615:CDS |
| CATCTAGGCACATGACGGCG+GGG | 0.653225 | 7.4:-5028658 | MS.gene072615:intron |
| TTACAAGGTCATGAATTGAG+GGG | 0.654271 | 7.4:-5020702 | MS.gene072615:CDS |
| TTGATAACAAGTCCCTACAC+TGG | 0.657074 | 7.4:-5032531 | MS.gene072615:intron |
| TATCAAGGTTCGGAGCTCGA+GGG | 0.657549 | 7.4:+5028380 | None:intergenic |
| TCAGAAACAGGAAGACCCCA+GGG | 0.660386 | 7.4:-5027529 | MS.gene072615:CDS |
| TGCAAAAGCACAATACTCGA+CGG | 0.660840 | 7.4:+5024412 | None:intergenic |
| GACATTAGCTATATGGGACA+CGG | 0.665115 | 7.4:-5028568 | MS.gene072615:CDS |
| TTATCAGGTTATGGAAGCAG+CGG | 0.668159 | 7.4:-5025701 | MS.gene072615:CDS |
| TGATGCATCTAGGCACATGA+CGG | 0.671546 | 7.4:-5028663 | MS.gene072615:intron |
| AAAATTGGCCTGCCACAGTG+TGG | 0.682317 | 7.4:-5028416 | MS.gene072615:CDS |
| ACAGTAGTCAATTCACACAA+TGG | 0.683026 | 7.4:+5028173 | None:intergenic |
| CTGGTGGAGTTGATGAACGA+CGG | 0.684583 | 7.4:-5033934 | MS.gene072615:CDS |
| CTGCCCCATCAACAAAAGGG+AGG | 0.684707 | 7.4:-5032639 | MS.gene072615:CDS |
| GAGCTTTCTAGAGTGATGGG+AGG | 0.688391 | 7.4:-5028624 | MS.gene072615:CDS |
| CCGACAGAAGCCATTCGTGG+AGG | 0.698024 | 7.4:-5032864 | MS.gene072615:CDS |
| TTAGGGGCAAGAGCGTGTGG+AGG | 0.698797 | 7.4:+5028146 | None:intergenic |
| TAAATTGTGCTAAATCATCG+TGG | 0.722125 | 7.4:+5021184 | None:intergenic |
| CTTGCTAGAAGGTACACTGG+AGG | 0.722740 | 7.4:-5029536 | MS.gene072615:CDS |
| GGCACCAAGAAGCCACACTG+TGG | 0.725339 | 7.4:+5028404 | None:intergenic |
| GGTTCAAAAGCATCTCCCTG+GGG | 0.735509 | 7.4:+5027514 | None:intergenic |
| CTAGTGAGAGCAGAATATGT+GGG | 0.736342 | 7.4:+5028197 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 5018212 | 5033975 | 5018212 | ID=MS.gene072615 |
| chr7.4 | mRNA | 5018212 | 5033975 | 5018212 | ID=MS.gene072615.t1;Parent=MS.gene072615 |
| chr7.4 | exon | 5033891 | 5033975 | 5033891 | ID=MS.gene072615.t1.exon1;Parent=MS.gene072615.t1 |
| chr7.4 | CDS | 5033891 | 5033975 | 5033891 | ID=cds.MS.gene072615.t1;Parent=MS.gene072615.t1 |
| chr7.4 | exon | 5032861 | 5032900 | 5032861 | ID=MS.gene072615.t1.exon2;Parent=MS.gene072615.t1 |
| chr7.4 | CDS | 5032861 | 5032900 | 5032861 | ID=cds.MS.gene072615.t1;Parent=MS.gene072615.t1 |
| chr7.4 | exon | 5032532 | 5032774 | 5032532 | ID=MS.gene072615.t1.exon3;Parent=MS.gene072615.t1 |
| chr7.4 | CDS | 5032532 | 5032774 | 5032532 | ID=cds.MS.gene072615.t1;Parent=MS.gene072615.t1 |
| chr7.4 | exon | 5029628 | 5029727 | 5029628 | ID=MS.gene072615.t1.exon4;Parent=MS.gene072615.t1 |
| chr7.4 | CDS | 5029628 | 5029727 | 5029628 | ID=cds.MS.gene072615.t1;Parent=MS.gene072615.t1 |
| chr7.4 | exon | 5029484 | 5029558 | 5029484 | ID=MS.gene072615.t1.exon5;Parent=MS.gene072615.t1 |
| chr7.4 | CDS | 5029484 | 5029558 | 5029484 | ID=cds.MS.gene072615.t1;Parent=MS.gene072615.t1 |
| chr7.4 | exon | 5028984 | 5029082 | 5028984 | ID=MS.gene072615.t1.exon6;Parent=MS.gene072615.t1 |
| chr7.4 | CDS | 5028984 | 5029082 | 5028984 | ID=cds.MS.gene072615.t1;Parent=MS.gene072615.t1 |
| chr7.4 | exon | 5028557 | 5028673 | 5028557 | ID=MS.gene072615.t1.exon7;Parent=MS.gene072615.t1 |
| chr7.4 | CDS | 5028557 | 5028673 | 5028557 | ID=cds.MS.gene072615.t1;Parent=MS.gene072615.t1 |
| chr7.4 | exon | 5028349 | 5028464 | 5028349 | ID=MS.gene072615.t1.exon8;Parent=MS.gene072615.t1 |
| chr7.4 | CDS | 5028349 | 5028464 | 5028349 | ID=cds.MS.gene072615.t1;Parent=MS.gene072615.t1 |
| chr7.4 | exon | 5028133 | 5028232 | 5028133 | ID=MS.gene072615.t1.exon9;Parent=MS.gene072615.t1 |
| chr7.4 | CDS | 5028133 | 5028232 | 5028133 | ID=cds.MS.gene072615.t1;Parent=MS.gene072615.t1 |
| chr7.4 | exon | 5027427 | 5027785 | 5027427 | ID=MS.gene072615.t1.exon10;Parent=MS.gene072615.t1 |
| chr7.4 | CDS | 5027427 | 5027785 | 5027427 | ID=cds.MS.gene072615.t1;Parent=MS.gene072615.t1 |
| chr7.4 | exon | 5026471 | 5026795 | 5026471 | ID=MS.gene072615.t1.exon11;Parent=MS.gene072615.t1 |
| chr7.4 | CDS | 5026471 | 5026795 | 5026471 | ID=cds.MS.gene072615.t1;Parent=MS.gene072615.t1 |
| chr7.4 | exon | 5025614 | 5025828 | 5025614 | ID=MS.gene072615.t1.exon12;Parent=MS.gene072615.t1 |
| chr7.4 | CDS | 5025614 | 5025828 | 5025614 | ID=cds.MS.gene072615.t1;Parent=MS.gene072615.t1 |
| chr7.4 | exon | 5024281 | 5024499 | 5024281 | ID=MS.gene072615.t1.exon13;Parent=MS.gene072615.t1 |
| chr7.4 | CDS | 5024281 | 5024499 | 5024281 | ID=cds.MS.gene072615.t1;Parent=MS.gene072615.t1 |
| chr7.4 | exon | 5023157 | 5023343 | 5023157 | ID=MS.gene072615.t1.exon14;Parent=MS.gene072615.t1 |
| chr7.4 | CDS | 5023157 | 5023343 | 5023157 | ID=cds.MS.gene072615.t1;Parent=MS.gene072615.t1 |
| chr7.4 | exon | 5022210 | 5022457 | 5022210 | ID=MS.gene072615.t1.exon15;Parent=MS.gene072615.t1 |
| chr7.4 | CDS | 5022210 | 5022457 | 5022210 | ID=cds.MS.gene072615.t1;Parent=MS.gene072615.t1 |
| chr7.4 | exon | 5021316 | 5021408 | 5021316 | ID=MS.gene072615.t1.exon16;Parent=MS.gene072615.t1 |
| chr7.4 | CDS | 5021316 | 5021408 | 5021316 | ID=cds.MS.gene072615.t1;Parent=MS.gene072615.t1 |
| chr7.4 | exon | 5021129 | 5021230 | 5021129 | ID=MS.gene072615.t1.exon17;Parent=MS.gene072615.t1 |
| chr7.4 | CDS | 5021129 | 5021230 | 5021129 | ID=cds.MS.gene072615.t1;Parent=MS.gene072615.t1 |
| chr7.4 | exon | 5020656 | 5021034 | 5020656 | ID=MS.gene072615.t1.exon18;Parent=MS.gene072615.t1 |
| chr7.4 | CDS | 5020656 | 5021034 | 5020656 | ID=cds.MS.gene072615.t1;Parent=MS.gene072615.t1 |
| chr7.4 | exon | 5018907 | 5019044 | 5018907 | ID=MS.gene072615.t1.exon19;Parent=MS.gene072615.t1 |
| chr7.4 | CDS | 5018907 | 5019044 | 5018907 | ID=cds.MS.gene072615.t1;Parent=MS.gene072615.t1 |
| chr7.4 | exon | 5018212 | 5018328 | 5018212 | ID=MS.gene072615.t1.exon20;Parent=MS.gene072615.t1 |
| chr7.4 | CDS | 5018212 | 5018328 | 5018212 | ID=cds.MS.gene072615.t1;Parent=MS.gene072615.t1 |
| Gene Sequence |
| Protein sequence |
