Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072704.t1 | XP_003625963.1 | 98.6 | 220 | 2 | 1 | 1 | 220 | 1 | 219 | 6.20E-116 | 426.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072704.t1 | G7KST0 | 98.6 | 220 | 2 | 1 | 1 | 220 | 1 | 219 | 4.4e-116 | 426.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050410 | MS.gene072704 | 0.807289 | 5.44E-50 | -1.69E-46 |
| MS.gene055150 | MS.gene072704 | 0.800138 | 1.66E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072704.t1 | MTR_7g109460 | 98.636 | 220 | 2 | 1 | 1 | 220 | 1 | 219 | 1.00e-159 | 440 |
| MS.gene072704.t1 | MTR_7g109460 | 98.780 | 164 | 2 | 0 | 1 | 164 | 1 | 164 | 9.57e-119 | 335 |
| MS.gene072704.t1 | MTR_1g087150 | 59.912 | 227 | 74 | 4 | 1 | 216 | 1 | 221 | 4.20e-78 | 234 |
| MS.gene072704.t1 | MTR_1g087150 | 62.376 | 202 | 67 | 2 | 1 | 193 | 1 | 202 | 8.32e-76 | 228 |
| MS.gene072704.t1 | MTR_1g108490 | 36.620 | 213 | 121 | 5 | 17 | 219 | 56 | 264 | 6.92e-46 | 153 |
| MS.gene072704.t1 | MTR_1g108490 | 41.935 | 155 | 80 | 3 | 17 | 164 | 56 | 207 | 6.32e-38 | 131 |
| MS.gene072704.t1 | MTR_7g082950 | 34.466 | 206 | 122 | 6 | 19 | 219 | 15 | 212 | 2.23e-37 | 130 |
| MS.gene072704.t1 | MTR_8g467220 | 38.974 | 195 | 106 | 5 | 9 | 194 | 56 | 246 | 1.25e-35 | 127 |
| MS.gene072704.t1 | MTR_5g040650 | 39.153 | 189 | 101 | 6 | 20 | 198 | 70 | 254 | 3.07e-31 | 115 |
| MS.gene072704.t1 | MTR_5g040650 | 38.919 | 185 | 99 | 6 | 20 | 194 | 70 | 250 | 2.19e-30 | 114 |
| MS.gene072704.t1 | MTR_7g082950 | 38.562 | 153 | 83 | 5 | 19 | 166 | 15 | 161 | 4.00e-28 | 104 |
| MS.gene072704.t1 | MTR_7g010610 | 38.318 | 107 | 57 | 4 | 1 | 105 | 16 | 115 | 1.89e-17 | 77.0 |
| MS.gene072704.t1 | MTR_3g053370 | 51.613 | 62 | 6 | 1 | 32 | 93 | 3 | 40 | 2.61e-11 | 57.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072704.t1 | AT1G02610 | 50.505 | 198 | 89 | 5 | 1 | 194 | 1 | 193 | 4.21e-60 | 187 |
| MS.gene072704.t1 | AT1G02610 | 50.505 | 198 | 89 | 5 | 1 | 194 | 1 | 193 | 4.72e-60 | 188 |
| MS.gene072704.t1 | AT4G02075 | 49.485 | 194 | 87 | 5 | 1 | 192 | 1 | 185 | 2.70e-54 | 173 |
| MS.gene072704.t1 | AT4G02075 | 48.969 | 194 | 88 | 5 | 1 | 192 | 1 | 185 | 4.44e-54 | 172 |
| MS.gene072704.t1 | AT2G01275 | 43.103 | 174 | 89 | 5 | 16 | 185 | 55 | 222 | 2.32e-44 | 149 |
| MS.gene072704.t1 | AT2G01275 | 43.103 | 174 | 89 | 5 | 16 | 185 | 55 | 222 | 2.32e-44 | 149 |
| MS.gene072704.t1 | AT2G01275 | 43.103 | 174 | 89 | 5 | 16 | 185 | 55 | 222 | 2.32e-44 | 149 |
| MS.gene072704.t1 | AT2G01275 | 43.103 | 174 | 89 | 5 | 16 | 185 | 81 | 248 | 2.47e-44 | 150 |
| MS.gene072704.t1 | AT2G01275 | 43.103 | 174 | 89 | 5 | 16 | 185 | 81 | 248 | 2.47e-44 | 150 |
| MS.gene072704.t1 | AT4G02075 | 49.112 | 169 | 75 | 5 | 1 | 167 | 1 | 160 | 1.13e-43 | 145 |
| MS.gene072704.t1 | AT2G02960 | 38.342 | 193 | 107 | 4 | 20 | 203 | 43 | 232 | 2.53e-33 | 121 |
| MS.gene072704.t1 | AT2G02960 | 38.342 | 193 | 107 | 4 | 20 | 203 | 43 | 232 | 2.53e-33 | 121 |
| MS.gene072704.t1 | AT2G02960 | 38.342 | 193 | 107 | 4 | 20 | 203 | 43 | 232 | 2.53e-33 | 121 |
| MS.gene072704.t1 | AT2G02960 | 38.342 | 193 | 107 | 4 | 20 | 203 | 43 | 232 | 2.53e-33 | 121 |
| MS.gene072704.t1 | AT2G02960 | 38.342 | 193 | 107 | 4 | 20 | 203 | 43 | 232 | 2.53e-33 | 121 |
| MS.gene072704.t1 | AT5G38070 | 36.612 | 183 | 93 | 5 | 15 | 186 | 49 | 219 | 4.47e-32 | 117 |
| MS.gene072704.t1 | AT3G47550 | 38.983 | 177 | 93 | 4 | 20 | 186 | 69 | 240 | 6.42e-30 | 111 |
| MS.gene072704.t1 | AT3G47550 | 39.459 | 185 | 96 | 5 | 20 | 194 | 69 | 247 | 7.40e-30 | 112 |
| MS.gene072704.t1 | AT3G47550 | 39.459 | 185 | 96 | 5 | 20 | 194 | 69 | 247 | 7.40e-30 | 112 |
| MS.gene072704.t1 | AT5G62460 | 39.674 | 184 | 99 | 4 | 20 | 194 | 78 | 258 | 5.77e-28 | 107 |
| MS.gene072704.t1 | AT5G62460 | 39.674 | 184 | 99 | 4 | 20 | 194 | 78 | 258 | 5.77e-28 | 107 |
| MS.gene072704.t1 | AT5G62460 | 39.674 | 184 | 99 | 4 | 20 | 194 | 91 | 271 | 5.87e-28 | 108 |
| MS.gene072704.t1 | AT1G14260 | 35.025 | 197 | 112 | 5 | 18 | 203 | 55 | 246 | 6.11e-27 | 104 |
| MS.gene072704.t1 | AT1G14260 | 35.025 | 197 | 112 | 5 | 18 | 203 | 55 | 246 | 6.11e-27 | 104 |
| MS.gene072704.t1 | AT1G14260 | 35.025 | 197 | 112 | 5 | 18 | 203 | 55 | 246 | 6.11e-27 | 104 |
| MS.gene072704.t1 | AT2G02960 | 43.066 | 137 | 68 | 3 | 20 | 149 | 43 | 176 | 4.61e-26 | 102 |
| MS.gene072704.t1 | AT3G47550 | 42.623 | 122 | 56 | 3 | 20 | 132 | 69 | 185 | 3.53e-23 | 93.6 |
| MS.gene072704.t1 | AT1G02610 | 37.984 | 129 | 73 | 4 | 70 | 194 | 2 | 127 | 1.03e-19 | 82.4 |
Find 44 sgRNAs with CRISPR-Local
Find 116 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTTACTAATCGATGATTTA+AGG | 0.158832 | 7.3:-5507398 | MS.gene072704:CDS |
| GATGATTTAAGGTTACTTTC+TGG | 0.231213 | 7.3:-5507387 | MS.gene072704:CDS |
| TCATTTATCTCTGATTTCTT+TGG | 0.231558 | 7.3:+5506488 | None:intergenic |
| CTTACGGTAAGAAGTGTAAA+TGG | 0.234459 | 7.3:+5505292 | None:intergenic |
| GAAGCACCTTGTTCTTGTTC+TGG | 0.299149 | 7.3:-5507309 | MS.gene072704:CDS |
| CGCGTTTCACTGTCGATCAT+TGG | 0.320595 | 7.3:-5506089 | MS.gene072704:CDS |
| ACAAGAACAAGGTGCTTCTA+AGG | 0.336965 | 7.3:+5507314 | None:intergenic |
| ACAAGGTGCTTCTAAGGCTT+TGG | 0.357018 | 7.3:+5507320 | None:intergenic |
| GTTGTAGGTCATTGTTCTAA+AGG | 0.358971 | 7.3:-5505169 | MS.gene072704:intron |
| AGCTTTCAAACTCTTCTTCA+TGG | 0.379338 | 7.3:+5507343 | None:intergenic |
| TTCTTGTTCTGGAACTGTTA+AGG | 0.379888 | 7.3:-5507298 | MS.gene072704:intron |
| TAGTGGTAGAGCTGCATTCC+GGG | 0.387977 | 7.3:+5506119 | None:intergenic |
| TTAGTGGTAGAGCTGCATTC+CGG | 0.388354 | 7.3:+5506118 | None:intergenic |
| TTTATCTCTGATTTCTTTGG+AGG | 0.412787 | 7.3:+5506491 | None:intergenic |
| GTTACTAGTAAGACATTGTT+TGG | 0.431240 | 7.3:-5505344 | MS.gene072704:CDS |
| ATCTCTGATTTCTTTGGAGG+AGG | 0.446591 | 7.3:+5506494 | None:intergenic |
| AACGCGGTAAAGTACCTTAT+GGG | 0.451704 | 7.3:+5506455 | None:intergenic |
| TAATCTTCGGTTCCACTTGT+GGG | 0.462880 | 7.3:+5505316 | None:intergenic |
| ATGATGAAGCAATGCCCATA+AGG | 0.464358 | 7.3:-5506469 | MS.gene072704:intron |
| GTGAAACGCGGTTCTGTTAG+TGG | 0.469197 | 7.3:+5506102 | None:intergenic |
| GAGCCATTCTGAATAGCATT+AGG | 0.470162 | 7.3:-5505101 | MS.gene072704:CDS |
| GTAATCTTCGGTTCCACTTG+TGG | 0.490070 | 7.3:+5505315 | None:intergenic |
| CAGAATGGCTCCGATTGTCT+TGG | 0.492886 | 7.3:+5505113 | None:intergenic |
| TACATAGTTACCAAGACAAT+CGG | 0.492892 | 7.3:-5505123 | MS.gene072704:CDS |
| AATAGCATTAGGCGCTATCA+AGG | 0.494672 | 7.3:-5505090 | MS.gene072704:CDS |
| GGAGGAGGAGCTGTATATCC+AGG | 0.497108 | 7.3:+5506509 | None:intergenic |
| TGTCTTGGTAACTATGTACA+TGG | 0.500550 | 7.3:+5505128 | None:intergenic |
| AAGTGTAAATGGGTAATCTT+CGG | 0.501901 | 7.3:+5505303 | None:intergenic |
| CAAAGATGGTGTAACGAGAA+AGG | 0.507130 | 7.3:-5507116 | MS.gene072704:CDS |
| TTACGGTAAGAAGTGTAAAT+GGG | 0.521582 | 7.3:+5505293 | None:intergenic |
| ATAGAGATTGCATACAAAGA+TGG | 0.547272 | 7.3:-5507130 | MS.gene072704:CDS |
| AACATGTGAAATATGTCTCC+AGG | 0.548388 | 7.3:-5507087 | MS.gene072704:intron |
| GTCATTGTTCTAAAGGCTTG+CGG | 0.555397 | 7.3:-5505162 | MS.gene072704:CDS |
| GCGCCTAATGCTATTCAGAA+TGG | 0.556703 | 7.3:+5505098 | None:intergenic |
| ACATCACTCTCTGATGAAGA+TGG | 0.559466 | 7.3:-5505054 | MS.gene072704:CDS |
| AGATGGCAGAAATGAAGAGC+AGG | 0.567472 | 7.3:-5505037 | MS.gene072704:CDS |
| TGTAATAGAAAGTGATTACC+CGG | 0.600485 | 7.3:-5506137 | MS.gene072704:CDS |
| TGTTTGGTAGTGCCCACAAG+TGG | 0.604389 | 7.3:-5505328 | MS.gene072704:CDS |
| ATAAGAGAAAGTGAGGTGGA+AGG | 0.645126 | 7.3:-5506163 | MS.gene072704:CDS |
| AAACGCGATAAGAGAAAGTG+AGG | 0.650705 | 7.3:-5506170 | MS.gene072704:CDS |
| CGCGATAAGAGAAAGTGAGG+TGG | 0.650995 | 7.3:-5506167 | MS.gene072704:CDS |
| GTCTTGGTAACTATGTACAT+GGG | 0.665639 | 7.3:+5505129 | None:intergenic |
| CAATGATCGACAGTGAAACG+CGG | 0.703113 | 7.3:+5506090 | None:intergenic |
| ACAGTTCCAGAACAAGAACA+AGG | 0.719305 | 7.3:+5507303 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAAAATAACACATTTAAT+TGG | - | chr7.3:5506154-5506173 | MS.gene072704:CDS | 10.0% |
| !! | TTTCATTCAAAATTAAAATA+CGG | + | chr7.3:5507169-5507188 | None:intergenic | 10.0% |
| !! | ATATAAGTCAAAATTAGATT+GGG | + | chr7.3:5505585-5505604 | None:intergenic | 15.0% |
| !! | CTACAAATTATAATATCAAA+TGG | + | chr7.3:5505761-5505780 | None:intergenic | 15.0% |
| !! | TATATAAGTCAAAATTAGAT+TGG | + | chr7.3:5505586-5505605 | None:intergenic | 15.0% |
| !!! | AAAAACTGTAAGTTATTTTT+CGG | + | chr7.3:5507038-5507057 | None:intergenic | 15.0% |
| !!! | AAATTTGATAACACATTTTA+AGG | - | chr7.3:5506212-5506231 | MS.gene072704:intron | 15.0% |
| !!! | AATTTGATAACACATTTTAA+GGG | - | chr7.3:5506213-5506232 | MS.gene072704:intron | 15.0% |
| !!! | CATTTGATATTATAATTTGT+AGG | - | chr7.3:5505759-5505778 | MS.gene072704:intron | 15.0% |
| !!! | GTATTTTAATTTTGAATGAA+AGG | - | chr7.3:5507168-5507187 | MS.gene072704:intron | 15.0% |
| !!! | TATTATAATTTGTAGGAATT+AGG | - | chr7.3:5505766-5505785 | MS.gene072704:intron | 15.0% |
| !! | AAATAAAGTTGCATGAATTT+AGG | - | chr7.3:5506477-5506496 | MS.gene072704:CDS | 20.0% |
| !! | AATAAAGTTGCATGAATTTA+GGG | - | chr7.3:5506478-5506497 | MS.gene072704:CDS | 20.0% |
| !! | GCATGATAAATATAAAAGAT+GGG | - | chr7.3:5505840-5505859 | MS.gene072704:intron | 20.0% |
| !! | TGCATGATAAATATAAAAGA+TGG | - | chr7.3:5505839-5505858 | MS.gene072704:intron | 20.0% |
| !!! | ATTTGATAACACATTTTAAG+GGG | - | chr7.3:5506214-5506233 | MS.gene072704:intron | 20.0% |
| !!! | TTTGTTATATAAACTCTTCT+AGG | + | chr7.3:5506579-5506598 | None:intergenic | 20.0% |
| ! | AATTATGTTGTGACGTAAAT+TGG | - | chr7.3:5505551-5505570 | MS.gene072704:intron | 25.0% |
| ! | GAAATGAAGATAGAACTAAA+GGG | + | chr7.3:5505739-5505758 | None:intergenic | 25.0% |
| ! | TCATTTATCTCTGATTTCTT+TGG | + | chr7.3:5505937-5505956 | None:intergenic | 25.0% |
| ! | TGTTACTAATCGATGATTTA+AGG | - | chr7.3:5505024-5505043 | MS.gene072704:CDS | 25.0% |
| ! | TTAAATTTCTCAGCTAATCA+TGG | - | chr7.3:5505713-5505732 | MS.gene072704:intron | 25.0% |
| ! | TTATGTTCATTGTATGCATA+AGG | + | chr7.3:5505802-5505821 | None:intergenic | 25.0% |
| ! | TTCATAAAATGCCATTAGTA+CGG | + | chr7.3:5507225-5507244 | None:intergenic | 25.0% |
| !! | ACGATTACTTTCAAACTTTT+AGG | - | chr7.3:5506776-5506795 | MS.gene072704:intron | 25.0% |
| !! | AGAAAACAATACACGTTTTT+GGG | + | chr7.3:5506664-5506683 | None:intergenic | 25.0% |
| !! | TAATGCTATGCTATTTGATT+AGG | + | chr7.3:5506417-5506436 | None:intergenic | 25.0% |
| !! | TAGAAAACAATACACGTTTT+TGG | + | chr7.3:5506665-5506684 | None:intergenic | 25.0% |
| !! | TTTAATTTAACCTGCAGTTA+GGG | - | chr7.3:5506934-5506953 | MS.gene072704:intron | 25.0% |
| !!! | CTTTTTGATTGAATTAAACG+CGG | + | chr7.3:5505986-5506005 | None:intergenic | 25.0% |
| !!! | TTATGAACTACTTTTGTTGT+AGG | - | chr7.3:5507238-5507257 | MS.gene072704:intron | 25.0% |
| !!! | TTTGATAACACATTTTAAGG+GGG | - | chr7.3:5506215-5506234 | MS.gene072704:intron | 25.0% |
| !!! | TTTTTTTAGACATGAAAGCA+TGG | + | chr7.3:5506889-5506908 | None:intergenic | 25.0% |
| AAGTGTAAATGGGTAATCTT+CGG | + | chr7.3:5507122-5507141 | None:intergenic | 30.0% | |
| ATAGAGATTGCATACAAAGA+TGG | - | chr7.3:5505292-5505311 | MS.gene072704:intron | 30.0% | |
| GGAAATGAAGATAGAACTAA+AGG | + | chr7.3:5505740-5505759 | None:intergenic | 30.0% | |
| GTTACTAGTAAGACATTGTT+TGG | - | chr7.3:5507078-5507097 | MS.gene072704:intron | 30.0% | |
| TAATCATCATCATACATACC+TGG | + | chr7.3:5505356-5505375 | None:intergenic | 30.0% | |
| TACATAGTTACCAAGACAAT+CGG | - | chr7.3:5507299-5507318 | MS.gene072704:CDS | 30.0% | |
| TGTAATAGAAAGTGATTACC+CGG | - | chr7.3:5506285-5506304 | MS.gene072704:intron | 30.0% | |
| TTTATCTCTGATTTCTTTGG+AGG | + | chr7.3:5505934-5505953 | None:intergenic | 30.0% | |
| ! | CTTTAATTTAACCTGCAGTT+AGG | - | chr7.3:5506933-5506952 | MS.gene072704:intron | 30.0% |
| ! | GATGATTTAAGGTTACTTTC+TGG | - | chr7.3:5505035-5505054 | MS.gene072704:CDS | 30.0% |
| ! | TTACGGTAAGAAGTGTAAAT+GGG | + | chr7.3:5507132-5507151 | None:intergenic | 30.0% |
| !! | TCAAACTTTTAGGTCACATT+TGG | - | chr7.3:5506786-5506805 | MS.gene072704:intron | 30.0% |
| !! | TTGATAACACATTTTAAGGG+GGG | - | chr7.3:5506216-5506235 | MS.gene072704:intron | 30.0% |
| AACATGTGAAATATGTCTCC+AGG | - | chr7.3:5505335-5505354 | MS.gene072704:CDS | 35.0% | |
| AGCTTTCAAACTCTTCTTCA+TGG | + | chr7.3:5505082-5505101 | None:intergenic | 35.0% | |
| ATGTTGTGACGTAAATTGGA+TGG | - | chr7.3:5505555-5505574 | MS.gene072704:intron | 35.0% | |
| CATGCAATGATGTATTCTGT+AGG | - | chr7.3:5507008-5507027 | MS.gene072704:intron | 35.0% | |
| CGGAAATCAAGTACTACTTA+CGG | + | chr7.3:5507149-5507168 | None:intergenic | 35.0% | |
| CTGAACTACTAGTACATAGT+CGG | + | chr7.3:5506839-5506858 | None:intergenic | 35.0% | |
| GAAGCTGGTCAAATTAAAAC+TGG | - | chr7.3:5506975-5506994 | MS.gene072704:intron | 35.0% | |
| GTTGTAGGTCATTGTTCTAA+AGG | - | chr7.3:5507253-5507272 | MS.gene072704:intron | 35.0% | |
| TAGGGAAAATAACGAGTCAA+GGG | - | chr7.3:5506496-5506515 | MS.gene072704:CDS | 35.0% | |
| TATCAAGTCTTAGCTACACA+TGG | - | chr7.3:5506044-5506063 | MS.gene072704:intron | 35.0% | |
| TGTTGTGACGTAAATTGGAT+GGG | - | chr7.3:5505556-5505575 | MS.gene072704:intron | 35.0% | |
| TTAGGGAAAATAACGAGTCA+AGG | - | chr7.3:5506495-5506514 | MS.gene072704:CDS | 35.0% | |
| ! | CTTACGGTAAGAAGTGTAAA+TGG | + | chr7.3:5507133-5507152 | None:intergenic | 35.0% |
| ! | GGTGCAACTATTTTATACGT+TGG | - | chr7.3:5506073-5506092 | MS.gene072704:intron | 35.0% |
| ! | GTCTTGGTAACTATGTACAT+GGG | + | chr7.3:5507296-5507315 | None:intergenic | 35.0% |
| ! | TGTCTTGGTAACTATGTACA+TGG | + | chr7.3:5507297-5507316 | None:intergenic | 35.0% |
| ! | TTTTTGCAGCAATATGAACC+TGG | - | chr7.3:5505895-5505914 | MS.gene072704:intron | 35.0% |
| !! | TTCTTGTTCTGGAACTGTTA+AGG | - | chr7.3:5505124-5505143 | MS.gene072704:CDS | 35.0% |
| AAACGCGATAAGAGAAAGTG+AGG | - | chr7.3:5506252-5506271 | MS.gene072704:intron | 40.0% | |
| AATAGCATTAGGCGCTATCA+AGG | - | chr7.3:5507332-5507351 | MS.gene072704:CDS | 40.0% | |
| ACAGTTCCAGAACAAGAACA+AGG | + | chr7.3:5505122-5505141 | None:intergenic | 40.0% | |
| ACATCACTCTCTGATGAAGA+TGG | - | chr7.3:5507368-5507387 | MS.gene072704:CDS | 40.0% | |
| ACCAGGAAAATGCTTTCACA+AGG | + | chr7.3:5506631-5506650 | None:intergenic | 40.0% | |
| ATAAGAGAAAGTGAGGTGGA+AGG | - | chr7.3:5506259-5506278 | MS.gene072704:intron | 40.0% | |
| ATGATGAAGCAATGCCCATA+AGG | - | chr7.3:5505953-5505972 | MS.gene072704:intron | 40.0% | |
| CAAAGATGGTGTAACGAGAA+AGG | - | chr7.3:5505306-5505325 | MS.gene072704:CDS | 40.0% | |
| GACCAGCTTCAATATCAGTT+GGG | + | chr7.3:5506965-5506984 | None:intergenic | 40.0% | |
| GAGAGAAAGAGTTATCTGTG+AGG | - | chr7.3:5505505-5505524 | MS.gene072704:intron | 40.0% | |
| GAGCCATTCTGAATAGCATT+AGG | - | chr7.3:5507321-5507340 | MS.gene072704:CDS | 40.0% | |
| GTTGAATTGTCATTGCCAAC+TGG | - | chr7.3:5506525-5506544 | MS.gene072704:intron | 40.0% | |
| TAATCTTCGGTTCCACTTGT+GGG | + | chr7.3:5507109-5507128 | None:intergenic | 40.0% | |
| TGACCAGCTTCAATATCAGT+TGG | + | chr7.3:5506966-5506985 | None:intergenic | 40.0% | |
| TTCCCAACTGATATTGAAGC+TGG | - | chr7.3:5506960-5506979 | MS.gene072704:intron | 40.0% | |
| ! | AAACGCGGTAAAGTACCTTA+TGG | + | chr7.3:5505971-5505990 | None:intergenic | 40.0% |
| ! | AACGCGGTAAAGTACCTTAT+GGG | + | chr7.3:5505970-5505989 | None:intergenic | 40.0% |
| ! | ACAAGAACAAGGTGCTTCTA+AGG | + | chr7.3:5505111-5505130 | None:intergenic | 40.0% |
| ! | ACATGAAAGCATGGTGTTTG+TGG | + | chr7.3:5506880-5506899 | None:intergenic | 40.0% |
| ! | ATCTCTGATTTCTTTGGAGG+AGG | + | chr7.3:5505931-5505950 | None:intergenic | 40.0% |
| ! | CATGAAAGCATGGTGTTTGT+GGG | + | chr7.3:5506879-5506898 | None:intergenic | 40.0% |
| !! | ACACGTATTTTGCTGTCGTT+AGG | - | chr7.3:5505528-5505547 | MS.gene072704:intron | 40.0% |
| !! | GTCATTGTTCTAAAGGCTTG+CGG | - | chr7.3:5507260-5507279 | MS.gene072704:intron | 40.0% |
| !!! | ACCTTGTGAAAGCATTTTCC+TGG | - | chr7.3:5506627-5506646 | MS.gene072704:intron | 40.0% |
| AGATGGCAGAAATGAAGAGC+AGG | - | chr7.3:5507385-5507404 | MS.gene072704:CDS | 45.0% | |
| AGTCTTAGCTACACATGGCA+TGG | - | chr7.3:5506049-5506068 | MS.gene072704:intron | 45.0% | |
| CAATGATCGACAGTGAAACG+CGG | + | chr7.3:5506335-5506354 | None:intergenic | 45.0% | |
| CCATTAGTACGGCTGTATGT+AGG | + | chr7.3:5507214-5507233 | None:intergenic | 45.0% | |
| CCTACATACAGCCGTACTAA+TGG | - | chr7.3:5507211-5507230 | MS.gene072704:intron | 45.0% | |
| GCGCCTAATGCTATTCAGAA+TGG | + | chr7.3:5507327-5507346 | None:intergenic | 45.0% | |
| GTAATCTTCGGTTCCACTTG+TGG | + | chr7.3:5507110-5507129 | None:intergenic | 45.0% | |
| TTAGTGGTAGAGCTGCATTC+CGG | + | chr7.3:5506307-5506326 | None:intergenic | 45.0% | |
| TTGGGAAAAACCCTAACTGC+AGG | + | chr7.3:5506947-5506966 | None:intergenic | 45.0% | |
| ! | GAAGCACCTTGTTCTTGTTC+TGG | - | chr7.3:5505113-5505132 | MS.gene072704:CDS | 45.0% |
| !! | ACAAGGTGCTTCTAAGGCTT+TGG | + | chr7.3:5505105-5505124 | None:intergenic | 45.0% |
| CAGAATGGCTCCGATTGTCT+TGG | + | chr7.3:5507312-5507331 | None:intergenic | 50.0% | |
| CGCGATAAGAGAAAGTGAGG+TGG | - | chr7.3:5506255-5506274 | MS.gene072704:intron | 50.0% | |
| CGCGTTTCACTGTCGATCAT+TGG | - | chr7.3:5506333-5506352 | MS.gene072704:intron | 50.0% | |
| CTTAGCTACACATGGCATGG+AGG | - | chr7.3:5506052-5506071 | MS.gene072704:intron | 50.0% | |
| GTGAAACGCGGTTCTGTTAG+TGG | + | chr7.3:5506323-5506342 | None:intergenic | 50.0% | |
| TAGTGGTAGAGCTGCATTCC+GGG | + | chr7.3:5506306-5506325 | None:intergenic | 50.0% | |
| ! | CTTCTAGGAGCCCTTGTGTT+GGG | + | chr7.3:5506564-5506583 | None:intergenic | 50.0% |
| ! | TCTTCTAGGAGCCCTTGTGT+TGG | + | chr7.3:5506565-5506584 | None:intergenic | 50.0% |
| ! | TTCTAGGAGCCCTTGTGTTG+GGG | + | chr7.3:5506563-5506582 | None:intergenic | 50.0% |
| !! | TGTTTGGTAGTGCCCACAAG+TGG | - | chr7.3:5507094-5507113 | MS.gene072704:CDS | 50.0% |
| !! | TTTTGGGAGAGTCGTGTACC+AGG | + | chr7.3:5506648-5506667 | None:intergenic | 50.0% |
| GCCAATTGCCCCCAACACAA+GGG | - | chr7.3:5506551-5506570 | MS.gene072704:intron | 55.0% | |
| GGAGGAGGAGCTGTATATCC+AGG | + | chr7.3:5505916-5505935 | None:intergenic | 55.0% | |
| GGGGCAATTGGCATTCCAGT+TGG | + | chr7.3:5506543-5506562 | None:intergenic | 55.0% | |
| TCTAGGAGCCCTTGTGTTGG+GGG | + | chr7.3:5506562-5506581 | None:intergenic | 55.0% | |
| TGCCAATTGCCCCCAACACA+AGG | - | chr7.3:5506550-5506569 | MS.gene072704:intron | 55.0% | |
| GCCCTTGTGTTGGGGGCAAT+TGG | + | chr7.3:5506555-5506574 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 5505011 | 5507433 | 5505011 | ID=MS.gene072704 |
| chr7.3 | mRNA | 5505011 | 5507433 | 5505011 | ID=MS.gene072704.t1;Parent=MS.gene072704 |
| chr7.3 | exon | 5507299 | 5507433 | 5507299 | ID=MS.gene072704.t1.exon1;Parent=MS.gene072704.t1 |
| chr7.3 | CDS | 5507299 | 5507433 | 5507299 | ID=cds.MS.gene072704.t1;Parent=MS.gene072704.t1 |
| chr7.3 | exon | 5507088 | 5507159 | 5507088 | ID=MS.gene072704.t1.exon2;Parent=MS.gene072704.t1 |
| chr7.3 | CDS | 5507088 | 5507159 | 5507088 | ID=cds.MS.gene072704.t1;Parent=MS.gene072704.t1 |
| chr7.3 | exon | 5506470 | 5506540 | 5506470 | ID=MS.gene072704.t1.exon3;Parent=MS.gene072704.t1 |
| chr7.3 | CDS | 5506470 | 5506540 | 5506470 | ID=cds.MS.gene072704.t1;Parent=MS.gene072704.t1 |
| chr7.3 | exon | 5506081 | 5506210 | 5506081 | ID=MS.gene072704.t1.exon4;Parent=MS.gene072704.t1 |
| chr7.3 | CDS | 5506081 | 5506210 | 5506081 | ID=cds.MS.gene072704.t1;Parent=MS.gene072704.t1 |
| chr7.3 | exon | 5505297 | 5505377 | 5505297 | ID=MS.gene072704.t1.exon5;Parent=MS.gene072704.t1 |
| chr7.3 | CDS | 5505297 | 5505377 | 5505297 | ID=cds.MS.gene072704.t1;Parent=MS.gene072704.t1 |
| chr7.3 | exon | 5505011 | 5505184 | 5505011 | ID=MS.gene072704.t1.exon6;Parent=MS.gene072704.t1 |
| chr7.3 | CDS | 5505011 | 5505184 | 5505011 | ID=cds.MS.gene072704.t1;Parent=MS.gene072704.t1 |
| Gene Sequence |
| Protein sequence |
