AlfalfaGEDB | MS.gene072736

M. sativa cultivar XinJiangDaYe / MS.gene072736

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene072736.t1	XP_003611012.1	97	99	3	0	6	104	93	191	3.30E-43	184.1

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene072736.t1	G7KAM4	97.0	99	3	0	6	104	93	191	2.4e-43	184.1

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene050759	MS.gene072736	0.805331	1.41E-49	-1.69E-46
MS.gene050962	MS.gene072736	0.801151	1.03E-48	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene072736.t1	MTR_5g009490	96.154	104	4	0	1	104	88	191	3.28e-68	202
MS.gene072736.t1	MTR_8g099340	46.729	107	51	4	2	104	71	175	5.31e-18	74.7

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 17 sgRNAs with CRISPR-Local

Find 21 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAACGAGAAATCTTGTA+CGG	0.579520	5.3:+3448846	None:intergenic
AACCATATACAAACACTCTT+TGG	0.339260	5.3:+3448713	None:intergenic
AACGTTTCAAGCAGTATCAC+TGG	0.562635	5.3:-3448777	MS.gene072736:CDS
AGAACACCAATCTCAAATTC+AGG	0.405479	5.3:+3448648	None:intergenic
AGTGATACTGCTTGAAACGT+TGG	0.596196	5.3:+3448779	None:intergenic
ATCTCAAATTCAGGAACTTC+AGG	0.352303	5.3:+3448657	None:intergenic
CGGTTCACGACCACCACAAT+TGG	0.418761	5.3:-3448582	MS.gene072736:CDS
CTCCAAAGAGTGTTTGTATA+TGG	0.256621	5.3:-3448715	MS.gene072736:CDS
GAAGTTCCTGAATTTGAGAT+TGG	0.459665	5.3:-3448654	MS.gene072736:CDS
GACGCACGCAATACCAATTG+TGG	0.574615	5.3:+3448569	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGAACGAGAAATCTTGTA+CGG	+	chr5.3:3448581-3448600	None:intergenic	30.0%
AACCATATACAAACACTCTT+TGG	+	chr5.3:3448714-3448733	None:intergenic	30.0%
AGAACACCAATCTCAAATTC+AGG	+	chr5.3:3448779-3448798	None:intergenic	35.0%
ATCTCAAATTCAGGAACTTC+AGG	+	chr5.3:3448770-3448789	None:intergenic	35.0%
TCAGGTATAGTAGAAAGAAC+TGG	+	chr5.3:3448752-3448771	None:intergenic	35.0%
TTAAAAGGTCAGCTTCTGAT+CGG	-	chr5.3:3448822-3448841	MS.gene072736:CDS	35.0%
TTAACCAAGGAAAATACCTC+AGG	+	chr5.3:3448806-3448825	None:intergenic	35.0%
AACGTTTCAAGCAGTATCAC+TGG	-	chr5.3:3448647-3448666	MS.gene072736:CDS	40.0%
AGTGATACTGCTTGAAACGT+TGG	+	chr5.3:3448648-3448667	None:intergenic	40.0%
GACGCACGCAATACCAATTG+TGG	+	chr5.3:3448858-3448877	None:intergenic	50.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5.3	gene	3448566	3448880	3448566	ID=MS.gene072736
chr5.3	mRNA	3448566	3448880	3448566	ID=MS.gene072736.t1;Parent=MS.gene072736
chr5.3	exon	3448566	3448880	3448566	ID=MS.gene072736.t1.exon1;Parent=MS.gene072736.t1
chr5.3	CDS	3448566	3448880	3448566	ID=cds.MS.gene072736.t1;Parent=MS.gene072736.t1

Gene Sequence	>MS.gene072736 ATGTCAAAGAAGCCGTACAAGATTTCTCGTTCTTTTCAGAAATTTATTCGTTCAGTTTTCAAGTCAGGCAATAAGAAATCCAACGTTTCAAGCAGTATCACTGGCACCAGCAGCAGCAATAGTTTCAAAATGCAAGAAAAATACTCCAAAGAGTGTTTGTATATGGTTTATGATAAGTCTGGACCAGTTCTTTCTACTATACCTGAAGTTCCTGAATTTGAGATTGGTGTTCTTTCGCCTGAGGTATTTTCCTTGGTTAAAAGGTCAGCTTCTGATCGGTTCACGACCACCACAATTGGTATTGCGTGCGTCTAA
Protein sequence	>MS.gene072736.t1 MSKKPYKISRSFQKFIRSVFKSGNKKSNVSSSITGTSSSNSFKMQEKYSKECLYMVYDKSGPVLSTIPEVPEFEIGVLSPEVFSLVKRSASDRFTTTTIGIACV