Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072761.t1 | XP_003611051.2 | 89.6 | 879 | 25 | 3 | 1 | 873 | 1 | 819 | 0.00E+00 | 1490.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072761.t1 | F4JYG0 | 45.2 | 458 | 242 | 7 | 6 | 459 | 2 | 454 | 9.4e-108 | 392.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072761.t1 | G7KBZ3 | 89.6 | 879 | 25 | 3 | 1 | 873 | 1 | 819 | 0.0e+00 | 1490.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene05509 | MS.gene072761 | 0.808779 | 2.62E-50 | -1.69E-46 |
| MS.gene056830 | MS.gene072761 | 0.800916 | 1.15E-48 | -1.69E-46 |
| MS.gene059872 | MS.gene072761 | 0.874964 | 4.47E-68 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072761.t1 | MTR_5g009920 | 88.510 | 879 | 35 | 4 | 1 | 873 | 1 | 819 | 0.0 | 1587 |
| MS.gene072761.t1 | MTR_7g063200 | 55.091 | 383 | 134 | 11 | 30 | 404 | 19 | 371 | 9.33e-126 | 384 |
| MS.gene072761.t1 | MTR_8g447390 | 79.464 | 224 | 43 | 1 | 1 | 224 | 1 | 221 | 5.18e-120 | 363 |
| MS.gene072761.t1 | MTR_3g107340 | 36.000 | 150 | 52 | 4 | 21 | 167 | 36 | 144 | 8.69e-19 | 84.3 |
| MS.gene072761.t1 | MTR_4g060510 | 30.275 | 109 | 73 | 1 | 302 | 407 | 351 | 459 | 9.28e-14 | 75.9 |
| MS.gene072761.t1 | MTR_4g060510 | 30.275 | 109 | 73 | 1 | 302 | 407 | 351 | 459 | 1.03e-13 | 75.9 |
| MS.gene072761.t1 | MTR_4g060510 | 30.275 | 109 | 73 | 1 | 302 | 407 | 351 | 459 | 1.13e-13 | 75.9 |
| MS.gene072761.t1 | MTR_2g093730 | 28.302 | 106 | 73 | 1 | 302 | 404 | 348 | 453 | 9.08e-12 | 69.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072761.t1 | AT5G41580 | 45.786 | 439 | 225 | 6 | 28 | 459 | 22 | 454 | 1.09e-128 | 404 |
| MS.gene072761.t1 | AT1G08910 | 45.198 | 354 | 172 | 6 | 56 | 406 | 19 | 353 | 5.07e-86 | 293 |
| MS.gene072761.t1 | AT5G60410 | 27.559 | 127 | 88 | 2 | 302 | 424 | 347 | 473 | 1.09e-11 | 69.3 |
| MS.gene072761.t1 | AT5G60410 | 27.559 | 127 | 88 | 2 | 302 | 424 | 347 | 473 | 1.12e-11 | 69.3 |
| MS.gene072761.t1 | AT5G60410 | 27.559 | 127 | 88 | 2 | 302 | 424 | 347 | 473 | 1.12e-11 | 69.3 |
| MS.gene072761.t1 | AT5G60410 | 27.559 | 127 | 88 | 2 | 302 | 424 | 347 | 473 | 1.20e-11 | 69.3 |
| MS.gene072761.t1 | AT5G60410 | 27.559 | 127 | 88 | 2 | 302 | 424 | 347 | 473 | 1.20e-11 | 69.3 |
| MS.gene072761.t1 | AT5G60410 | 26.772 | 127 | 89 | 2 | 302 | 424 | 347 | 473 | 1.54e-11 | 68.9 |
Find 222 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTTCTCAATGTTATCAATT+TGG | 0.142707 | 5.3:-3667610 | None:intergenic |
| GAAGATTTGTCCCAAATTTA+AGG | 0.163350 | 5.3:-3667938 | None:intergenic |
| GTGACTAGTATCCTTAAATT+TGG | 0.171967 | 5.3:+3667927 | MS.gene072761:CDS |
| GCAAAATCCAGCAACTAATT+TGG | 0.176863 | 5.3:+3673108 | MS.gene072761:CDS |
| GCTTCGATTGACACGATTAT+TGG | 0.194213 | 5.3:-3666466 | None:intergenic |
| ATTGGACCCAATTCCATATT+AGG | 0.198424 | 5.3:-3666448 | None:intergenic |
| AGCAATATTTAAAAGTTCTT+TGG | 0.218427 | 5.3:-3665979 | None:intergenic |
| CGAATGCGTGGAAGTCTTTC+AGG | 0.233205 | 5.3:+3674379 | MS.gene072761:CDS |
| CGTATCAAGACTCCTGTTAA+AGG | 0.242769 | 5.3:+3671424 | MS.gene072761:CDS |
| GACCTTGTGGTCTTGAACTT+TGG | 0.249873 | 5.3:-3674459 | None:intergenic |
| TTGACTAGCGACGGCGATAC+TGG | 0.256234 | 5.3:-3664246 | None:intergenic |
| ATTACCTGTTTCATCAAAAT+AGG | 0.262474 | 5.3:-3664733 | None:intergenic |
| CTTCTCAATGTTATCAATTT+GGG | 0.269032 | 5.3:-3667609 | None:intergenic |
| GTACAGAATCACCAAAGTTT+TGG | 0.281310 | 5.3:+3664272 | MS.gene072761:CDS |
| GAACATTATTCTTTGTGATA+TGG | 0.283211 | 5.3:-3666613 | None:intergenic |
| ACAATATTGGAAACGGTATC+AGG | 0.290804 | 5.3:-3672689 | None:intergenic |
| TTATAGAATGCCTGTGAAAT+TGG | 0.291640 | 5.3:+3665936 | MS.gene072761:intron |
| TTCAAATAGAGGATGACTTT+TGG | 0.297967 | 5.3:+3672804 | MS.gene072761:CDS |
| GTTGGTGAGGTCCACAATAT+TGG | 0.311216 | 5.3:-3672702 | None:intergenic |
| GCAGTCATTGCACCTGATTC+AGG | 0.317865 | 5.3:-3664213 | None:intergenic |
| TATATGAATTCAAACGAGTA+TGG | 0.318224 | 5.3:+3672998 | MS.gene072761:CDS |
| CCTGCATTGCAGCCTGGTTA+TGG | 0.331075 | 5.3:+3666572 | MS.gene072761:intron |
| CTCAGAAAATGATCAGAATA+AGG | 0.333916 | 5.3:+3672616 | MS.gene072761:CDS |
| TTGCATGAATGCCCTTTAAC+AGG | 0.334801 | 5.3:-3671436 | None:intergenic |
| GTACTATCCTAATATGGAAT+TGG | 0.335532 | 5.3:+3666441 | MS.gene072761:CDS |
| TCTCTCTTAATTGTCCAATA+AGG | 0.338239 | 5.3:+3668495 | MS.gene072761:CDS |
| TAGGACTCCTACAGCTATTC+AGG | 0.342399 | 5.3:+3673051 | MS.gene072761:CDS |
| AAGGTTAAAGCATACCTTAT+TGG | 0.342861 | 5.3:-3668509 | None:intergenic |
| TTGCAGGTACTATCCTAATA+TGG | 0.343026 | 5.3:+3666435 | MS.gene072761:intron |
| GTAGTACTCGGTTATGAGTT+GGG | 0.353068 | 5.3:-3673841 | None:intergenic |
| ACTGCAGGATGGCAAGAATT+AGG | 0.353357 | 5.3:-3666137 | None:intergenic |
| CACCAACAATGATAATGATT+TGG | 0.360028 | 5.3:+3672718 | MS.gene072761:CDS |
| ATTCTCAAGATGGGATTGTT+TGG | 0.361264 | 5.3:+3674125 | MS.gene072761:CDS |
| GATGGGATTGTTTGGACAGC+TGG | 0.383394 | 5.3:+3674133 | MS.gene072761:CDS |
| ATCTTGAGAATTACCTTGTC+TGG | 0.383477 | 5.3:-3674113 | None:intergenic |
| TGACTAGTATCCTTAAATTT+GGG | 0.389003 | 5.3:+3667928 | MS.gene072761:CDS |
| AAGGAATCCAAATTAGTTGC+TGG | 0.389766 | 5.3:-3673115 | None:intergenic |
| GAAACAGCATCAGCCAGTTC+AGG | 0.390148 | 5.3:-3672884 | None:intergenic |
| TTGATTATGCACTTGCAAAC+GGG | 0.398831 | 5.3:+3664683 | MS.gene072761:CDS |
| ATTCACAACCAGATCAGAAT+TGG | 0.403779 | 5.3:+3674347 | MS.gene072761:CDS |
| TAGCAATAGCCCTAGCTTGT+TGG | 0.405143 | 5.3:-3674171 | None:intergenic |
| TGTTGTTGAGATTCCTGAAC+TGG | 0.405288 | 5.3:+3672871 | MS.gene072761:CDS |
| GTCCAAATCATTATCATTGT+TGG | 0.409949 | 5.3:-3672720 | None:intergenic |
| ACATAATCTGGTGGAAGAAC+TGG | 0.411589 | 5.3:-3668128 | None:intergenic |
| ACATATTAACTGTTGGAAAT+CGG | 0.411627 | 5.3:-3673814 | None:intergenic |
| TGAGATCGTTGAGCATTTGA+TGG | 0.413287 | 5.3:-3674004 | None:intergenic |
| TACTATCCTAATATGGAATT+GGG | 0.414578 | 5.3:+3666442 | MS.gene072761:CDS |
| CAAGGATCCAACACTCATAT+AGG | 0.417557 | 5.3:-3668096 | None:intergenic |
| TTTCAGGCTTCTGCTCCTAC+TGG | 0.418512 | 5.3:+3672779 | MS.gene072761:CDS |
| TCATTAAAATAAATCTTAAG+AGG | 0.419591 | 5.3:+3671966 | MS.gene072761:CDS |
| GTTGCATTGGTTGGTGTGCA+TGG | 0.421015 | 5.3:-3673982 | None:intergenic |
| GCAAGTAGATTCTTGTTGTT+CGG | 0.424406 | 5.3:-3672663 | None:intergenic |
| GTTCTTTGGAATCATTCTCC+TGG | 0.425071 | 5.3:-3665965 | None:intergenic |
| CTTTGTAGCATTCTCCTGAA+TGG | 0.425155 | 5.3:+3667743 | MS.gene072761:intron |
| ATTGGGACTGTCTGGCAGCC+AGG | 0.425956 | 5.3:-3674198 | None:intergenic |
| GTGGTCCTGATGTCTGAGAT+TGG | 0.428559 | 5.3:-3673084 | None:intergenic |
| AGTGGGGATGTTGGTCGGCC+TGG | 0.429349 | 5.3:-3674487 | None:intergenic |
| TCTGCTTCTTGATTAAATAC+AGG | 0.431675 | 5.3:-3672908 | None:intergenic |
| AGGAGCAGCAGATGGATTGC+TGG | 0.439185 | 5.3:-3673143 | None:intergenic |
| TATATTGCCAACGGTGGGTC+TGG | 0.439366 | 5.3:+3672836 | MS.gene072761:CDS |
| CGGCAGCGAGACTTATTCAT+AGG | 0.443670 | 5.3:+3673032 | MS.gene072761:CDS |
| TTGTCGACGCTACCTGAATC+AGG | 0.444585 | 5.3:+3664201 | MS.gene072761:CDS |
| TGCATTATAGTTAATACTGC+AGG | 0.447031 | 5.3:-3666152 | None:intergenic |
| CATTTGATGGTTGCATTGGT+TGG | 0.448702 | 5.3:-3673991 | None:intergenic |
| CCTGATGTCTGAGATTGGAC+TGG | 0.449169 | 5.3:-3673079 | None:intergenic |
| GATGTTGGTCGGCCTGGTTG+TGG | 0.451719 | 5.3:-3674481 | None:intergenic |
| GTAGCAGCTGACATATTAAC+TGG | 0.451955 | 5.3:-3673863 | None:intergenic |
| ACAGCAGGCTGAACATAATC+TGG | 0.453979 | 5.3:-3668140 | None:intergenic |
| GCAGACAGGCTGATTGCAAT+GGG | 0.454796 | 5.3:-3672005 | None:intergenic |
| ATTGATTATGCACTTGCAAA+CGG | 0.456638 | 5.3:+3664682 | MS.gene072761:CDS |
| CTGTGAAATTGGATGGTTCC+AGG | 0.460910 | 5.3:+3665947 | MS.gene072761:CDS |
| AGCATATCTGTTCTGTGTGG+TGG | 0.466341 | 5.3:-3673917 | None:intergenic |
| GCAAAGAGGACCACCAGTAC+AGG | 0.467098 | 5.3:+3674297 | MS.gene072761:CDS |
| TTGGGACTGTCTGGCAGCCA+GGG | 0.470670 | 5.3:-3674197 | None:intergenic |
| TCCTACTGGCGTTCAAATAG+AGG | 0.471110 | 5.3:+3672793 | MS.gene072761:CDS |
| TTGTAAGGATCTGCAGAGGC+AGG | 0.472072 | 5.3:-3673184 | None:intergenic |
| GTATCAAGACTCCTGTTAAA+GGG | 0.475781 | 5.3:+3671425 | MS.gene072761:CDS |
| ATGTATATAGCCAACAAGCT+AGG | 0.477914 | 5.3:+3674161 | MS.gene072761:CDS |
| ACCTATGTCTCTCCCTCTCA+AGG | 0.478519 | 5.3:+3664352 | MS.gene072761:CDS |
| TTAACTGCAGTGGTTATTGG+TGG | 0.480339 | 5.3:+3667586 | MS.gene072761:intron |
| ACCTGTGTTGCTGCTGAGAC+AGG | 0.481369 | 5.3:-3673268 | None:intergenic |
| CTGATGTCTGAGATTGGACT+GGG | 0.483349 | 5.3:-3673078 | None:intergenic |
| AGATGGATTGCTGGTTATCA+AGG | 0.484090 | 5.3:-3673134 | None:intergenic |
| AGCTACAGCAAGTAGCCAAC+AGG | 0.485148 | 5.3:+3674063 | MS.gene072761:CDS |
| TAAGGCCTACGATTGTGAAA+TGG | 0.485780 | 5.3:+3672634 | MS.gene072761:CDS |
| AGCCAAACGTTCCAAAACTT+TGG | 0.486048 | 5.3:-3664283 | None:intergenic |
| TAGCCAACAGGCCAGAGTTA+TGG | 0.488934 | 5.3:+3674075 | MS.gene072761:CDS |
| AGCATTCTCCTGAATGGAAA+AGG | 0.497355 | 5.3:+3667749 | MS.gene072761:intron |
| TGAAATGGATTGGGACTGTC+TGG | 0.499090 | 5.3:-3674206 | None:intergenic |
| GGAATCTCAACAACAGCTGT+AGG | 0.499503 | 5.3:-3672863 | None:intergenic |
| AAAGCATCGCTACGGTTGCC+AGG | 0.500354 | 5.3:-3664318 | None:intergenic |
| TCACTCAGAATGGCATTGTA+AGG | 0.501316 | 5.3:-3673199 | None:intergenic |
| TCACTTGCTGTGGGCTGATG+AGG | 0.501427 | 5.3:-3667640 | None:intergenic |
| GAAACAGACCATTCGAAAGT+TGG | 0.502758 | 5.3:-3667786 | None:intergenic |
| CTTTGGACTTGATGTGATGA+TGG | 0.504163 | 5.3:-3674442 | None:intergenic |
| CAGGTGGGCAACTGTGGTCC+AGG | 0.504260 | 5.3:-3667903 | None:intergenic |
| CCAGTCCAATCTCAGACATC+AGG | 0.504469 | 5.3:+3673079 | MS.gene072761:CDS |
| GTACTAGAAACTGCCTGTAC+TGG | 0.504580 | 5.3:-3674310 | None:intergenic |
| GTAGGACGCCAATTCTGATC+TGG | 0.505115 | 5.3:-3674355 | None:intergenic |
| CATCCAGTGGGGATGTTGGT+CGG | 0.508490 | 5.3:-3674492 | None:intergenic |
| TTGGCTACACACTTTGTACC+TGG | 0.509036 | 5.3:+3664300 | MS.gene072761:CDS |
| CAATATTGGAAACGGTATCA+GGG | 0.509177 | 5.3:-3672688 | None:intergenic |
| TAAATCTTAAGAGGCCATCC+TGG | 0.511976 | 5.3:+3671975 | MS.gene072761:CDS |
| TATGCAATTGACTTGGTGCT+CGG | 0.512409 | 5.3:-3673892 | None:intergenic |
| GTAGGAGCAGAAGCCTGAAA+AGG | 0.515223 | 5.3:-3672776 | None:intergenic |
| GGTTCACAAGCTTATGCAGC+TGG | 0.517823 | 5.3:+3674040 | MS.gene072761:CDS |
| GAATCTCAACAACAGCTGTA+GGG | 0.519052 | 5.3:-3672862 | None:intergenic |
| TTGCATTGGTTGGTGTGCAT+GGG | 0.519731 | 5.3:-3673981 | None:intergenic |
| GCATATCTGTTCTGTGTGGT+GGG | 0.520076 | 5.3:-3673916 | None:intergenic |
| GACAAATCTTCTTCAAGCTG+TGG | 0.520325 | 5.3:+3667950 | MS.gene072761:CDS |
| AGCAACTTACTGAAGATGTT+AGG | 0.523348 | 5.3:+3674404 | MS.gene072761:CDS |
| TGATACCGTTTCCAATATTG+TGG | 0.523441 | 5.3:+3672691 | MS.gene072761:CDS |
| TGACTAGCGACGGCGATACT+GGG | 0.525932 | 5.3:-3664245 | None:intergenic |
| GTCTTTATATTGCCAACGGT+GGG | 0.526311 | 5.3:+3672831 | MS.gene072761:CDS |
| TCCTGTCTCAGCAGCAACAC+AGG | 0.526695 | 5.3:+3673267 | MS.gene072761:CDS |
| CGAATTTCTGTATAGCAGAC+AGG | 0.533356 | 5.3:-3672019 | None:intergenic |
| AGGATCTGCAGAGGCAGGGT+TGG | 0.534550 | 5.3:-3673179 | None:intergenic |
| GGTAGTACTCGGTTATGAGT+TGG | 0.536119 | 5.3:-3673842 | None:intergenic |
| AGACAAGGTAATTCTCAAGA+TGG | 0.536177 | 5.3:+3674115 | MS.gene072761:CDS |
| AAAACATACTTCACTTGCTG+TGG | 0.537317 | 5.3:-3667650 | None:intergenic |
| TGTATATAGCCAACAAGCTA+GGG | 0.540474 | 5.3:+3674162 | MS.gene072761:CDS |
| AGCAGACAGGCTGATTGCAA+TGG | 0.540650 | 5.3:-3672006 | None:intergenic |
| GACAAGGTAATTCTCAAGAT+GGG | 0.541237 | 5.3:+3674116 | MS.gene072761:CDS |
| TGAGCATTTGATGGTTGCAT+TGG | 0.541940 | 5.3:-3673995 | None:intergenic |
| AGCTGCTTGTGAATGTTCAT+CGG | 0.543974 | 5.3:-3664914 | None:intergenic |
| GGGGCTGACATATTAACTGT+TGG | 0.547235 | 5.3:-3673821 | None:intergenic |
| ACATTCACAAGCAGCTGTGA+TGG | 0.547508 | 5.3:+3664921 | MS.gene072761:CDS |
| CTTGTTGCCTATATGAGTGT+TGG | 0.549590 | 5.3:+3668089 | MS.gene072761:CDS |
| GGTGGAAGAACTGGATGCGC+AGG | 0.549852 | 5.3:-3668119 | None:intergenic |
| GAGGTCCACAATATTGGAAA+CGG | 0.551485 | 5.3:-3672696 | None:intergenic |
| CCTGCTGTATCTGTTGATGC+AGG | 0.551853 | 5.3:+3668155 | MS.gene072761:CDS |
| ACAAATCTTCTTCAAGCTGT+GGG | 0.552823 | 5.3:+3667951 | MS.gene072761:CDS |
| CGACGGCGATACTGGGTTTG+CGG | 0.553587 | 5.3:-3664238 | None:intergenic |
| AATCATTATCATTGTTGGTG+AGG | 0.556311 | 5.3:-3672715 | None:intergenic |
| AAGCCATAACTCTGGCCTGT+TGG | 0.557198 | 5.3:-3674078 | None:intergenic |
| CTGGAACCATCCAATTTCAC+AGG | 0.558429 | 5.3:-3665946 | None:intergenic |
| ATGAATAAGTCTCGCTGCCG+AGG | 0.559974 | 5.3:-3673029 | None:intergenic |
| TAGGGCTATTGCTAATGCCC+TGG | 0.560518 | 5.3:+3674180 | MS.gene072761:CDS |
| TCTTTCTGCATCACTCAGAA+TGG | 0.560756 | 5.3:-3673209 | None:intergenic |
| ATATGAATTCAAACGAGTAT+GGG | 0.565564 | 5.3:+3672999 | MS.gene072761:CDS |
| CAACGATCTCACATTAAACA+AGG | 0.565877 | 5.3:+3674016 | MS.gene072761:CDS |
| ACCTTGAGAGGGAGAGACAT+AGG | 0.566861 | 5.3:-3664353 | None:intergenic |
| TGAAGCTGATGGATCGTGGA+AGG | 0.568355 | 5.3:+3672589 | MS.gene072761:CDS |
| CAAGCTGTGGGTCAGTTCGA+TGG | 0.568802 | 5.3:+3667963 | MS.gene072761:CDS |
| TTTACAGCTGACAGTTTCTG+GGG | 0.569694 | 5.3:+3674262 | MS.gene072761:CDS |
| GAAACATGAGGAGCAGCAGA+TGG | 0.569827 | 5.3:-3673151 | None:intergenic |
| GCTGATGGATCGTGGAAGGT+AGG | 0.574070 | 5.3:+3672593 | MS.gene072761:CDS |
| TGCATTTCCCAGTGTGCAGT+AGG | 0.575256 | 5.3:-3666105 | None:intergenic |
| AGTCTTTATATTGCCAACGG+TGG | 0.575866 | 5.3:+3672830 | MS.gene072761:CDS |
| AAGAACTGGATGCGCAGGCA+AGG | 0.576782 | 5.3:-3668114 | None:intergenic |
| CGAGTATGGGAGGTCATCCT+CGG | 0.576987 | 5.3:+3673012 | MS.gene072761:CDS |
| AGGCCGACCAACATCCCCAC+TGG | 0.578122 | 5.3:+3674489 | MS.gene072761:CDS |
| GCTAGTCTTTATATTGCCAA+CGG | 0.580281 | 5.3:+3672827 | MS.gene072761:CDS |
| ACAGCAGAAGCTCCATAACC+AGG | 0.580618 | 5.3:-3666584 | None:intergenic |
| CAAAGATATCACGGTCTCGA+AGG | 0.584766 | 5.3:-3674547 | None:intergenic |
| TGGCGTCCTACGCGAATGCG+TGG | 0.584876 | 5.3:+3674367 | MS.gene072761:CDS |
| TCTTGACAGAAACATGATTG+AGG | 0.585741 | 5.3:+3672042 | MS.gene072761:CDS |
| GGTGGGTTATGCAATTGACT+TGG | 0.586533 | 5.3:-3673899 | None:intergenic |
| CGGCCTGGTTGTGGACCTTG+TGG | 0.587308 | 5.3:-3674472 | None:intergenic |
| TAGTACTCGGTTATGAGTTG+GGG | 0.589650 | 5.3:-3673840 | None:intergenic |
| TGTCTGAGATTGGACTGGGA+GGG | 0.590186 | 5.3:-3673074 | None:intergenic |
| GTCACACAGGTGGGCAACTG+TGG | 0.591084 | 5.3:-3667909 | None:intergenic |
| ATGTGATGAAGCCATAACTC+TGG | 0.591542 | 5.3:-3674086 | None:intergenic |
| AGGATGGCAAGAATTAGGTT+CGG | 0.592268 | 5.3:-3666132 | None:intergenic |
| GGGCATTCAGAGTTTGCTGA+AGG | 0.594538 | 5.3:-3673961 | None:intergenic |
| TGATTATGCACTTGCAAACG+GGG | 0.594791 | 5.3:+3664684 | MS.gene072761:CDS |
| AGACCACAAGGTCCACAACC+AGG | 0.595290 | 5.3:+3674469 | MS.gene072761:CDS |
| TCATCACATGTTGCCAGACA+AGG | 0.595732 | 5.3:+3674100 | MS.gene072761:CDS |
| AGACAGGCTGATTGCAATGG+GGG | 0.598590 | 5.3:-3672003 | None:intergenic |
| GGTAATTCGTTAGCTTTCAG+CGG | 0.598843 | 5.3:-3664712 | None:intergenic |
| ATGTCTGAGATTGGACTGGG+AGG | 0.604193 | 5.3:-3673075 | None:intergenic |
| AATCGTGTCAATCGAAGCCA+AGG | 0.606381 | 5.3:+3666471 | MS.gene072761:CDS |
| CTGTTCCATTTCACAATCGT+AGG | 0.608870 | 5.3:-3672639 | None:intergenic |
| CTAGAAACTGCCTGTACTGG+TGG | 0.610220 | 5.3:-3674307 | None:intergenic |
| TGTATTTAATCAAGAAGCAG+AGG | 0.610348 | 5.3:+3672910 | MS.gene072761:CDS |
| TACAAGGACCAACTTTCGAA+TGG | 0.611482 | 5.3:+3667778 | MS.gene072761:CDS |
| GGGAGGGCCTGAATAGCTGT+AGG | 0.612706 | 5.3:-3673058 | None:intergenic |
| AATATTGGAAACGGTATCAG+GGG | 0.613244 | 5.3:-3672687 | None:intergenic |
| TAGCAATGAGTGCATCCAGT+GGG | 0.613683 | 5.3:-3674504 | None:intergenic |
| AGAATGCCTGTGAAATTGGA+TGG | 0.614220 | 5.3:+3665940 | MS.gene072761:intron |
| AAACATACTTCACTTGCTGT+GGG | 0.615861 | 5.3:-3667649 | None:intergenic |
| AAAATTCGAAAGCATCGCTA+CGG | 0.616054 | 5.3:-3664326 | None:intergenic |
| AGGATACTAGTCACACAGGT+GGG | 0.618545 | 5.3:-3667918 | None:intergenic |
| AATCTCAACAACAGCTGTAG+GGG | 0.619407 | 5.3:-3672861 | None:intergenic |
| ACATATTAACTGGTAGTACT+CGG | 0.619625 | 5.3:-3673853 | None:intergenic |
| AGTGCATCCAGTGGGGATGT+TGG | 0.625884 | 5.3:-3674496 | None:intergenic |
| CAGTATTAACTATAATGCAA+AGG | 0.627544 | 5.3:+3666156 | MS.gene072761:CDS |
| CTGTACAAATTGACTAGCGA+CGG | 0.630592 | 5.3:-3664255 | None:intergenic |
| GCAGGCTGAACATAATCTGG+TGG | 0.631588 | 5.3:-3668137 | None:intergenic |
| CAGGAGTCTTGATACGCGTA+CGG | 0.634194 | 5.3:-3671417 | None:intergenic |
| TGTAAGGATCTGCAGAGGCA+GGG | 0.634324 | 5.3:-3673183 | None:intergenic |
| CCTGCATCAACAGATACAGC+AGG | 0.634428 | 5.3:-3668155 | None:intergenic |
| TCCTCTATTTGAACGCCAGT+AGG | 0.634640 | 5.3:-3672794 | None:intergenic |
| ATAGATTCAGATATTATCGA+GGG | 0.634714 | 5.3:+3668461 | MS.gene072761:intron |
| ATATTGGAAACGGTATCAGG+GGG | 0.638111 | 5.3:-3672686 | None:intergenic |
| ACGATCTCACATTAAACAAG+GGG | 0.642549 | 5.3:+3674018 | MS.gene072761:CDS |
| TTACAGCTGACAGTTTCTGG+GGG | 0.642824 | 5.3:+3674263 | MS.gene072761:CDS |
| AAAAGTTGGTGAGAACATTG+TGG | 0.645022 | 5.3:+3672556 | MS.gene072761:CDS |
| GTCCAAAGTTCAAGACCACA+AGG | 0.648817 | 5.3:+3674457 | MS.gene072761:CDS |
| TATAGATTCAGATATTATCG+AGG | 0.650562 | 5.3:+3668460 | MS.gene072761:intron |
| ATGGAAAAGGAATTGATACA+AGG | 0.650862 | 5.3:+3667762 | MS.gene072761:CDS |
| TGAATTCAAACGAGTATGGG+AGG | 0.651901 | 5.3:+3673002 | MS.gene072761:CDS |
| AACGATCTCACATTAAACAA+GGG | 0.653671 | 5.3:+3674017 | MS.gene072761:CDS |
| TTTAAGGATACTAGTCACAC+AGG | 0.661802 | 5.3:-3667922 | None:intergenic |
| AGACTTCCACGCATTCGCGT+AGG | 0.662484 | 5.3:-3674373 | None:intergenic |
| GTATTTAATCAAGAAGCAGA+GGG | 0.669244 | 5.3:+3672911 | MS.gene072761:CDS |
| AAGGATACTAGTCACACAGG+TGG | 0.672225 | 5.3:-3667919 | None:intergenic |
| GATTCAGGTAGCGTCGACAA+CGG | 0.677457 | 5.3:-3664198 | None:intergenic |
| TGTGTTGCTGCTGAGACAGG+AGG | 0.681287 | 5.3:-3673265 | None:intergenic |
| GGCATTGTAAGGATCTGCAG+AGG | 0.687949 | 5.3:-3673188 | None:intergenic |
| TTAGCAATGAGTGCATCCAG+TGG | 0.692794 | 5.3:-3674505 | None:intergenic |
| AGGGGTACCAGACCCACCGT+TGG | 0.695241 | 5.3:-3672843 | None:intergenic |
| TTCAGCATATCTGTTCTGTG+TGG | 0.695517 | 5.3:-3673920 | None:intergenic |
| TTATAGTTAATACTGCAGGA+TGG | 0.705534 | 5.3:-3666148 | None:intergenic |
| ACTGTCAGCTGTAAAACATG+TGG | 0.705698 | 5.3:-3674254 | None:intergenic |
| GACAGGAGGCACATTCAATG+CGG | 0.714156 | 5.3:-3673251 | None:intergenic |
| CAGACAGGCTGATTGCAATG+GGG | 0.714556 | 5.3:-3672004 | None:intergenic |
| TATTGGAAACGGTATCAGGG+GGG | 0.716622 | 5.3:-3672685 | None:intergenic |
| CGATCTCACATTAAACAAGG+GGG | 0.745067 | 5.3:+3674019 | MS.gene072761:CDS |
| GGGTTGGACAAAGAAACATG+AGG | 0.749016 | 5.3:-3673163 | None:intergenic |
| GGGTTGACAGGAGAGCAAAG+AGG | 0.756130 | 5.3:+3674283 | MS.gene072761:CDS |
| AGCAATGAGTGCATCCAGTG+GGG | 0.780427 | 5.3:-3674503 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 3664177 | 3674561 | 3664177 | ID=MS.gene072761 |
| chr5.3 | mRNA | 3664177 | 3674561 | 3664177 | ID=MS.gene072761.t1;Parent=MS.gene072761 |
| chr5.3 | exon | 3664177 | 3664373 | 3664177 | ID=MS.gene072761.t1.exon1;Parent=MS.gene072761.t1 |
| chr5.3 | CDS | 3664177 | 3664373 | 3664177 | ID=cds.MS.gene072761.t1;Parent=MS.gene072761.t1 |
| chr5.3 | exon | 3664678 | 3664750 | 3664678 | ID=MS.gene072761.t1.exon2;Parent=MS.gene072761.t1 |
| chr5.3 | CDS | 3664678 | 3664750 | 3664678 | ID=cds.MS.gene072761.t1;Parent=MS.gene072761.t1 |
| chr5.3 | exon | 3664898 | 3664963 | 3664898 | ID=MS.gene072761.t1.exon3;Parent=MS.gene072761.t1 |
| chr5.3 | CDS | 3664898 | 3664963 | 3664898 | ID=cds.MS.gene072761.t1;Parent=MS.gene072761.t1 |
| chr5.3 | exon | 3665942 | 3666007 | 3665942 | ID=MS.gene072761.t1.exon4;Parent=MS.gene072761.t1 |
| chr5.3 | CDS | 3665942 | 3666007 | 3665942 | ID=cds.MS.gene072761.t1;Parent=MS.gene072761.t1 |
| chr5.3 | exon | 3666095 | 3666177 | 3666095 | ID=MS.gene072761.t1.exon5;Parent=MS.gene072761.t1 |
| chr5.3 | CDS | 3666095 | 3666177 | 3666095 | ID=cds.MS.gene072761.t1;Parent=MS.gene072761.t1 |
| chr5.3 | exon | 3666441 | 3666492 | 3666441 | ID=MS.gene072761.t1.exon6;Parent=MS.gene072761.t1 |
| chr5.3 | CDS | 3666441 | 3666492 | 3666441 | ID=cds.MS.gene072761.t1;Parent=MS.gene072761.t1 |
| chr5.3 | exon | 3666584 | 3666652 | 3666584 | ID=MS.gene072761.t1.exon7;Parent=MS.gene072761.t1 |
| chr5.3 | CDS | 3666584 | 3666652 | 3666584 | ID=cds.MS.gene072761.t1;Parent=MS.gene072761.t1 |
| chr5.3 | exon | 3667596 | 3667663 | 3667596 | ID=MS.gene072761.t1.exon8;Parent=MS.gene072761.t1 |
| chr5.3 | CDS | 3667596 | 3667663 | 3667596 | ID=cds.MS.gene072761.t1;Parent=MS.gene072761.t1 |
| chr5.3 | exon | 3667751 | 3667799 | 3667751 | ID=MS.gene072761.t1.exon9;Parent=MS.gene072761.t1 |
| chr5.3 | CDS | 3667751 | 3667799 | 3667751 | ID=cds.MS.gene072761.t1;Parent=MS.gene072761.t1 |
| chr5.3 | exon | 3667900 | 3667984 | 3667900 | ID=MS.gene072761.t1.exon10;Parent=MS.gene072761.t1 |
| chr5.3 | CDS | 3667900 | 3667984 | 3667900 | ID=cds.MS.gene072761.t1;Parent=MS.gene072761.t1 |
| chr5.3 | exon | 3668075 | 3668176 | 3668075 | ID=MS.gene072761.t1.exon11;Parent=MS.gene072761.t1 |
| chr5.3 | CDS | 3668075 | 3668176 | 3668075 | ID=cds.MS.gene072761.t1;Parent=MS.gene072761.t1 |
| chr5.3 | exon | 3668465 | 3668516 | 3668465 | ID=MS.gene072761.t1.exon12;Parent=MS.gene072761.t1 |
| chr5.3 | CDS | 3668465 | 3668516 | 3668465 | ID=cds.MS.gene072761.t1;Parent=MS.gene072761.t1 |
| chr5.3 | exon | 3671417 | 3671468 | 3671417 | ID=MS.gene072761.t1.exon13;Parent=MS.gene072761.t1 |
| chr5.3 | CDS | 3671417 | 3671468 | 3671417 | ID=cds.MS.gene072761.t1;Parent=MS.gene072761.t1 |
| chr5.3 | exon | 3671947 | 3672063 | 3671947 | ID=MS.gene072761.t1.exon14;Parent=MS.gene072761.t1 |
| chr5.3 | CDS | 3671947 | 3672063 | 3671947 | ID=cds.MS.gene072761.t1;Parent=MS.gene072761.t1 |
| chr5.3 | exon | 3672548 | 3673288 | 3672548 | ID=MS.gene072761.t1.exon15;Parent=MS.gene072761.t1 |
| chr5.3 | CDS | 3672548 | 3673288 | 3672548 | ID=cds.MS.gene072761.t1;Parent=MS.gene072761.t1 |
| chr5.3 | exon | 3673812 | 3674561 | 3673812 | ID=MS.gene072761.t1.exon16;Parent=MS.gene072761.t1 |
| chr5.3 | CDS | 3673812 | 3674561 | 3673812 | ID=cds.MS.gene072761.t1;Parent=MS.gene072761.t1 |
| Gene Sequence |
| Protein sequence |
