Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059872.t1 | XP_013464760.1 | 99 | 101 | 1 | 0 | 1 | 101 | 959 | 1059 | 1.20E-50 | 208.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059872.t1 | Q2QNU0 | 72.3 | 101 | 28 | 0 | 1 | 101 | 955 | 1055 | 1.0e-37 | 157.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059872.t1 | A0A072VKX8 | 99.0 | 101 | 1 | 0 | 1 | 101 | 959 | 1059 | 8.7e-51 | 208.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene04915 | MS.gene059872 | -0.812393 | 4.34E-51 | -1.69E-46 |
| MS.gene04917 | MS.gene059872 | -0.801935 | 7.12E-49 | -1.69E-46 |
| MS.gene049419 | MS.gene059872 | 0.813682 | 2.26E-51 | -1.69E-46 |
| MS.gene049438 | MS.gene059872 | -0.809713 | 1.65E-50 | -1.69E-46 |
| MS.gene04991 | MS.gene059872 | 0.824946 | 6.13E-54 | -1.69E-46 |
| MS.gene052309 | MS.gene059872 | 0.831671 | 1.46E-55 | -1.69E-46 |
| MS.gene052818 | MS.gene059872 | 0.849602 | 2.91E-60 | -1.69E-46 |
| MS.gene053340 | MS.gene059872 | -0.80341 | 3.53E-49 | -1.69E-46 |
| MS.gene05344 | MS.gene059872 | 0.825244 | 5.21E-54 | -1.69E-46 |
| MS.gene05469 | MS.gene059872 | -0.802772 | 4.79E-49 | -1.69E-46 |
| MS.gene056849 | MS.gene059872 | -0.800095 | 1.69E-48 | -1.69E-46 |
| MS.gene057451 | MS.gene059872 | 0.810068 | 1.39E-50 | -1.69E-46 |
| MS.gene057452 | MS.gene059872 | 0.829027 | 6.47E-55 | -1.69E-46 |
| MS.gene057999 | MS.gene059872 | -0.825075 | 5.71E-54 | -1.69E-46 |
| MS.gene058661 | MS.gene059872 | 0.817219 | 3.69E-52 | -1.69E-46 |
| MS.gene059872 | MS.gene061918 | 0.803554 | 3.30E-49 | -1.69E-46 |
| MS.gene059872 | MS.gene063081 | 0.815034 | 1.14E-51 | -1.69E-46 |
| MS.gene059872 | MS.gene063636 | -0.803078 | 4.14E-49 | -1.69E-46 |
| MS.gene059872 | MS.gene064845 | -0.814876 | 1.23E-51 | -1.69E-46 |
| MS.gene059872 | MS.gene068683 | 0.902478 | 9.31E-79 | -1.69E-46 |
| MS.gene059872 | MS.gene069065 | -0.830517 | 2.81E-55 | -1.69E-46 |
| MS.gene059872 | MS.gene069085 | 0.807755 | 4.33E-50 | -1.69E-46 |
| MS.gene059872 | MS.gene069571 | 0.803843 | 2.87E-49 | -1.69E-46 |
| MS.gene059872 | MS.gene070011 | -0.856824 | 2.48E-62 | -1.69E-46 |
| MS.gene059872 | MS.gene070954 | 0.851554 | 8.23E-61 | -1.69E-46 |
| MS.gene059872 | MS.gene071710 | 0.800143 | 1.65E-48 | -1.69E-46 |
| MS.gene059872 | MS.gene072087 | 0.800722 | 1.26E-48 | -1.69E-46 |
| MS.gene059872 | MS.gene072761 | 0.874964 | 4.47E-68 | -1.69E-46 |
| MS.gene059872 | MS.gene072970 | -0.862384 | 5.26E-64 | -1.69E-46 |
| MS.gene059872 | MS.gene074045 | -0.824156 | 9.40E-54 | -1.69E-46 |
| MS.gene059872 | MS.gene08797 | 0.815879 | 7.37E-52 | -1.69E-46 |
| MS.gene059872 | MS.gene08889 | -0.80633 | 8.67E-50 | -1.69E-46 |
| MS.gene059872 | MS.gene20407 | 0.850133 | 2.07E-60 | -1.69E-46 |
| MS.gene059872 | MS.gene21659 | -0.802585 | 5.23E-49 | -1.69E-46 |
| MS.gene059872 | MS.gene22314 | -0.829351 | 5.41E-55 | -1.69E-46 |
| MS.gene059872 | MS.gene22340 | 0.86367 | 2.11E-64 | -1.69E-46 |
| MS.gene059872 | MS.gene22992 | 0.804128 | 2.51E-49 | -1.69E-46 |
| MS.gene059872 | MS.gene23152 | 0.830245 | 3.27E-55 | -1.69E-46 |
| MS.gene059872 | MS.gene23153 | 0.809802 | 1.58E-50 | -1.69E-46 |
| MS.gene059872 | MS.gene23256 | -0.831837 | 1.33E-55 | -1.69E-46 |
| MS.gene059872 | MS.gene23464 | -0.821649 | 3.61E-53 | -1.69E-46 |
| MS.gene059872 | MS.gene25198 | -0.800759 | 1.24E-48 | -1.69E-46 |
| MS.gene059872 | MS.gene27108 | 0.83076 | 2.45E-55 | -1.69E-46 |
| MS.gene059872 | MS.gene27134 | -0.800795 | 1.22E-48 | -1.69E-46 |
| MS.gene059872 | MS.gene27228 | -0.815168 | 1.06E-51 | -1.69E-46 |
| MS.gene059872 | MS.gene27865 | 0.827354 | 1.64E-54 | -1.69E-46 |
| MS.gene059872 | MS.gene28684 | -0.813255 | 2.81E-51 | -1.69E-46 |
| MS.gene059872 | MS.gene28922 | 0.814433 | 1.54E-51 | -1.69E-46 |
| MS.gene059872 | MS.gene29053 | 0.813143 | 2.97E-51 | -1.69E-46 |
| MS.gene059872 | MS.gene29277 | 0.815621 | 8.42E-52 | -1.69E-46 |
| MS.gene059872 | MS.gene29794 | -0.820584 | 6.35E-53 | -1.69E-46 |
| MS.gene059872 | MS.gene30792 | 0.86119 | 1.22E-63 | -1.69E-46 |
| MS.gene059872 | MS.gene33126 | 0.802885 | 4.54E-49 | -1.69E-46 |
| MS.gene059872 | MS.gene33183 | -0.800422 | 1.45E-48 | -1.69E-46 |
| MS.gene059872 | MS.gene33735 | -0.802437 | 5.61E-49 | -1.69E-46 |
| MS.gene059872 | MS.gene34115 | -0.829064 | 6.34E-55 | -1.69E-46 |
| MS.gene059872 | MS.gene36098 | 0.854111 | 1.53E-61 | -1.69E-46 |
| MS.gene059872 | MS.gene36331 | -0.833162 | 6.25E-56 | -1.69E-46 |
| MS.gene059872 | MS.gene37419 | -0.827311 | 1.68E-54 | -1.69E-46 |
| MS.gene059872 | MS.gene37434 | 0.814642 | 1.39E-51 | -1.69E-46 |
| MS.gene059872 | MS.gene37835 | 0.820953 | 5.22E-53 | -1.69E-46 |
| MS.gene059872 | MS.gene39139 | -0.808763 | 2.64E-50 | -1.69E-46 |
| MS.gene059872 | MS.gene39213 | -0.815609 | 8.47E-52 | -1.69E-46 |
| MS.gene059872 | MS.gene39313 | -0.813992 | 1.93E-51 | -1.69E-46 |
| MS.gene059872 | MS.gene40838 | -0.81834 | 2.06E-52 | -1.69E-46 |
| MS.gene059872 | MS.gene40917 | 0.858615 | 7.30E-63 | -1.69E-46 |
| MS.gene059872 | MS.gene43862 | -0.806516 | 7.92E-50 | -1.69E-46 |
| MS.gene059872 | MS.gene44072 | 0.800642 | 1.31E-48 | -1.69E-46 |
| MS.gene059872 | MS.gene45451 | 0.804434 | 2.16E-49 | -1.69E-46 |
| MS.gene059872 | MS.gene46301 | -0.800338 | 1.51E-48 | -1.69E-46 |
| MS.gene059872 | MS.gene46355 | -0.817352 | 3.45E-52 | -1.69E-46 |
| MS.gene059872 | MS.gene47798 | -0.809738 | 1.63E-50 | -1.69E-46 |
| MS.gene059872 | MS.gene48393 | 0.864037 | 1.62E-64 | -1.69E-46 |
| MS.gene059872 | MS.gene48990 | 0.818511 | 1.89E-52 | -1.69E-46 |
| MS.gene059872 | MS.gene49939 | 0.813146 | 2.97E-51 | -1.69E-46 |
| MS.gene059872 | MS.gene50027 | -0.841923 | 3.54E-58 | -1.69E-46 |
| MS.gene059872 | MS.gene50528 | -0.801074 | 1.07E-48 | -1.69E-46 |
| MS.gene059872 | MS.gene55544 | -0.80124 | 9.88E-49 | -1.69E-46 |
| MS.gene059872 | MS.gene56493 | -0.817235 | 3.66E-52 | -1.69E-46 |
| MS.gene059872 | MS.gene56931 | 0.818466 | 1.93E-52 | -1.69E-46 |
| MS.gene059872 | MS.gene58616 | -0.832126 | 1.13E-55 | -1.69E-46 |
| MS.gene059872 | MS.gene58928 | 0.813704 | 2.24E-51 | -1.69E-46 |
| MS.gene059872 | MS.gene59352 | 0.813914 | 2.01E-51 | -1.69E-46 |
| MS.gene059872 | MS.gene61436 | 0.840677 | 7.53E-58 | -1.69E-46 |
| MS.gene059872 | MS.gene62786 | 0.801952 | 7.06E-49 | -1.69E-46 |
| MS.gene059872 | MS.gene62956 | -0.804546 | 2.05E-49 | -1.69E-46 |
| MS.gene059872 | MS.gene63221 | 0.806095 | 9.71E-50 | -1.69E-46 |
| MS.gene059872 | MS.gene63281 | -0.804379 | 2.22E-49 | -1.69E-46 |
| MS.gene059872 | MS.gene64085 | 0.876804 | 1.04E-68 | -1.69E-46 |
| MS.gene059872 | MS.gene66408 | -0.807583 | 4.71E-50 | -1.69E-46 |
| MS.gene059872 | MS.gene67179 | -0.802284 | 6.04E-49 | -1.69E-46 |
| MS.gene059872 | MS.gene69304 | 0.805699 | 1.18E-49 | -1.69E-46 |
| MS.gene059872 | MS.gene69314 | -0.801312 | 9.56E-49 | -1.69E-46 |
| MS.gene059872 | MS.gene70314 | -0.802696 | 4.96E-49 | -1.69E-46 |
| MS.gene059872 | MS.gene70988 | 0.800996 | 1.11E-48 | -1.69E-46 |
| MS.gene059872 | MS.gene72748 | -0.802796 | 4.73E-49 | -1.69E-46 |
| MS.gene059872 | MS.gene72954 | 0.810948 | 8.94E-51 | -1.69E-46 |
| MS.gene059872 | MS.gene73270 | -0.827547 | 1.47E-54 | -1.69E-46 |
| MS.gene059872 | MS.gene74237 | -0.808069 | 3.71E-50 | -1.69E-46 |
| MS.gene059872 | MS.gene74938 | -0.825734 | 3.99E-54 | -1.69E-46 |
| MS.gene059872 | MS.gene75699 | 0.835096 | 2.05E-56 | -1.69E-46 |
| MS.gene059872 | MS.gene75707 | -0.815413 | 9.36E-52 | -1.69E-46 |
| MS.gene059872 | MS.gene76514 | -0.821168 | 4.66E-53 | -1.69E-46 |
| MS.gene059872 | MS.gene78143 | 0.800295 | 1.54E-48 | -1.69E-46 |
| MS.gene059872 | MS.gene79599 | 0.837724 | 4.39E-57 | -1.69E-46 |
| MS.gene059872 | MS.gene80182 | 0.868234 | 7.60E-66 | -1.69E-46 |
| MS.gene059872 | MS.gene81715 | -0.807923 | 3.99E-50 | -1.69E-46 |
| MS.gene059872 | MS.gene82350 | -0.836909 | 7.10E-57 | -1.69E-46 |
| MS.gene059872 | MS.gene82352 | -0.835992 | 1.21E-56 | -1.69E-46 |
| MS.gene059872 | MS.gene82354 | -0.851006 | 1.18E-60 | -1.69E-46 |
| MS.gene059872 | MS.gene82976 | -0.841824 | 3.76E-58 | -1.69E-46 |
| MS.gene059872 | MS.gene82978 | -0.835803 | 1.36E-56 | -1.69E-46 |
| MS.gene059872 | MS.gene82983 | -0.86681 | 2.17E-65 | -1.69E-46 |
| MS.gene059872 | MS.gene86061 | -0.842663 | 2.25E-58 | -1.69E-46 |
| MS.gene059872 | MS.gene90119 | -0.815155 | 1.07E-51 | -1.69E-46 |
| MS.gene059872 | MS.gene91006 | -0.800995 | 1.11E-48 | -1.69E-46 |
| MS.gene059872 | MS.gene91519 | 0.816634 | 5.00E-52 | -1.69E-46 |
| MS.gene059872 | MS.gene92135 | -0.812823 | 3.49E-51 | -1.69E-46 |
| MS.gene059872 | MS.gene93288 | 0.810375 | 1.19E-50 | -1.69E-46 |
| MS.gene059872 | MS.gene93736 | 0.802341 | 5.87E-49 | -1.69E-46 |
| MS.gene059872 | MS.gene93983 | -0.838699 | 2.46E-57 | -1.69E-46 |
| MS.gene059872 | MS.gene99465 | -0.843194 | 1.63E-58 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059872.t1 | MTR_2g080050 | 99.010 | 101 | 1 | 0 | 1 | 101 | 959 | 1059 | 3.60e-65 | 212 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059872.t1 | AT5G54440 | 69.307 | 101 | 30 | 1 | 1 | 101 | 960 | 1059 | 1.14e-44 | 154 |
| MS.gene059872.t1 | AT5G54440 | 69.307 | 101 | 30 | 1 | 1 | 101 | 960 | 1059 | 1.22e-44 | 154 |
| MS.gene059872.t1 | AT5G54440 | 69.307 | 101 | 30 | 1 | 1 | 101 | 960 | 1059 | 1.26e-44 | 154 |
Find 24 sgRNAs with CRISPR-Local
Find 88 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAGATGGATTTGTTCATTC+TGG | 0.189962 | 2.3:-17728386 | MS.gene059872:CDS |
| ATAGCTCTAAAACTTGAATT+TGG | 0.208032 | 2.3:-17729646 | MS.gene059872:CDS |
| AGTGGGAAGAAGCTTGATTT+AGG | 0.339290 | 2.3:+17728347 | None:intergenic |
| ACTAAACAAAATTCCTGCTT+TGG | 0.355602 | 2.3:+17728307 | None:intergenic |
| CAAAATTCCTGCTTTGGAAG+TGG | 0.363715 | 2.3:+17728313 | None:intergenic |
| ATCAAGCCAAGCATCGTATA+TGG | 0.435464 | 2.3:+17728412 | None:intergenic |
| GAAGTGGGAGATATGATTAG+TGG | 0.465095 | 2.3:+17728329 | None:intergenic |
| CTATGTGAGGACACGTGTTA+CGG | 0.468702 | 2.3:-17729422 | MS.gene059872:CDS |
| GCTTGGCTTGATCTTCAAGA+TGG | 0.485212 | 2.3:-17728401 | MS.gene059872:CDS |
| ATATCTCCCACTTCCAAAGC+AGG | 0.489370 | 2.3:-17728320 | MS.gene059872:CDS |
| AATACTTCACTCTGAAGTAA+AGG | 0.499484 | 2.3:-17728444 | MS.gene059872:CDS |
| AAAATTCCTGCTTTGGAAGT+GGG | 0.503747 | 2.3:+17728314 | None:intergenic |
| TGATGGTACACTGCTTCTGC+AGG | 0.519077 | 2.3:-17729389 | MS.gene059872:intron |
| TGTTGACCATATACGATGCT+TGG | 0.525977 | 2.3:-17728418 | MS.gene059872:CDS |
| GTTACGGATAAATGCAATGA+TGG | 0.530071 | 2.3:-17729406 | MS.gene059872:CDS |
| ACACGTGTCCTCACATAGAA+AGG | 0.532823 | 2.3:+17729427 | None:intergenic |
| GATGTGTAAAATGCACTGCT+AGG | 0.541628 | 2.3:+17729449 | None:intergenic |
| ACCTTTCAAATATCTGATTG+TGG | 0.553853 | 2.3:+17729617 | None:intergenic |
| AAGTGGGAGATATGATTAGT+GGG | 0.557690 | 2.3:+17728330 | None:intergenic |
| TCCACAATCAGATATTTGAA+AGG | 0.558857 | 2.3:-17729618 | MS.gene059872:intron |
| TGTTCATTCTGGACAAACTG+AGG | 0.580236 | 2.3:-17728375 | MS.gene059872:CDS |
| ATGTGTAAAATGCACTGCTA+GGG | 0.584379 | 2.3:+17729450 | None:intergenic |
| TTACACATCCTTTCTATGTG+AGG | 0.593309 | 2.3:-17729435 | MS.gene059872:CDS |
| GTTCATTCTGGACAAACTGA+GGG | 0.611224 | 2.3:-17728374 | MS.gene059872:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTAAACAATTATGAAAATA+AGG | + | chr2.3:17728608-17728627 | None:intergenic | 10.0% |
| !! | AGGAAAAAAAAAATTATAGA+TGG | + | chr2.3:17728685-17728704 | None:intergenic | 15.0% |
| !!! | AAATATAAAAATGATGGAAA+TGG | + | chr2.3:17728380-17728399 | None:intergenic | 15.0% |
| !! | CAAAATATACAAAGAAATGT+AGG | - | chr2.3:17729247-17729266 | MS.gene059872:intron | 20.0% |
| !!! | CTACATTTCTTTGTATATTT+TGG | + | chr2.3:17729249-17729268 | None:intergenic | 20.0% |
| !!! | GTTTGATGATTTTTATATAG+AGG | - | chr2.3:17729179-17729198 | MS.gene059872:intron | 20.0% |
| !!! | TATTTGAACAACCATTTTAT+GGG | - | chr2.3:17729207-17729226 | MS.gene059872:intron | 20.0% |
| !!! | TTATTTGAACAACCATTTTA+TGG | - | chr2.3:17729206-17729225 | MS.gene059872:intron | 20.0% |
| ! | AAAAATGTCATAAATCTCAG+TGG | + | chr2.3:17729439-17729458 | None:intergenic | 25.0% |
| ! | AAAAATTATAGATGGTTCCT+AGG | + | chr2.3:17728677-17728696 | None:intergenic | 25.0% |
| ! | CTCAAAATATTAAGCTGTTT+GGG | + | chr2.3:17728896-17728915 | None:intergenic | 25.0% |
| ! | TCATAAAAGTTGTCACAAAA+TGG | - | chr2.3:17729340-17729359 | MS.gene059872:intron | 25.0% |
| ! | TCTCAAAATATTAAGCTGTT+TGG | + | chr2.3:17728897-17728916 | None:intergenic | 25.0% |
| ! | TTCCTAGGCATATATATAAT+GGG | + | chr2.3:17728662-17728681 | None:intergenic | 25.0% |
| ! | TTCCTTCATATGTAAAAAGT+TGG | + | chr2.3:17728748-17728767 | None:intergenic | 25.0% |
| !! | ATTTTAGATATGTCAGTCAT+AGG | - | chr2.3:17728828-17728847 | MS.gene059872:intron | 25.0% |
| !!! | AATATTTTACCTTGTTATCC+AGG | - | chr2.3:17728490-17728509 | MS.gene059872:intron | 25.0% |
| !!! | ATAGCTCTAAAACTTGAATT+TGG | - | chr2.3:17728318-17728337 | MS.gene059872:CDS | 25.0% |
| !!! | GATTTTTAGTATATTGTTGC+CGG | + | chr2.3:17729133-17729152 | None:intergenic | 25.0% |
| !!! | GCTTAATATTTTGAGATTGA+TGG | - | chr2.3:17728901-17728920 | MS.gene059872:intron | 25.0% |
| AAAGTTCATTTGGAAGAATG+GGG | + | chr2.3:17728987-17729006 | None:intergenic | 30.0% | |
| AACAATCGAACATATTCAAC+CGG | - | chr2.3:17729111-17729130 | MS.gene059872:intron | 30.0% | |
| AATGAACTTTCAACATAAGG+TGG | - | chr2.3:17728997-17729016 | MS.gene059872:intron | 30.0% | |
| ACCTTTCAAATATCTGATTG+TGG | + | chr2.3:17728350-17728369 | None:intergenic | 30.0% | |
| ATATTAAGCTGTTTGGGTAA+AGG | + | chr2.3:17728890-17728909 | None:intergenic | 30.0% | |
| ATTGCTTTCTGTGCTAAAAT+AGG | - | chr2.3:17728708-17728727 | MS.gene059872:intron | 30.0% | |
| CCAAATGAACTTTCAACATA+AGG | - | chr2.3:17728994-17729013 | MS.gene059872:intron | 30.0% | |
| CCTTATGTTGAAAGTTCATT+TGG | + | chr2.3:17728997-17729016 | None:intergenic | 30.0% | |
| GAAAGTTCATTTGGAAGAAT+GGG | + | chr2.3:17728988-17729007 | None:intergenic | 30.0% | |
| GTTCCTAGGCATATATATAA+TGG | + | chr2.3:17728663-17728682 | None:intergenic | 30.0% | |
| TCATAAGTTGTCCCATAAAA+TGG | + | chr2.3:17729221-17729240 | None:intergenic | 30.0% | |
| TCCACAATCAGATATTTGAA+AGG | - | chr2.3:17728346-17728365 | MS.gene059872:CDS | 30.0% | |
| TGAAAGTTCATTTGGAAGAA+TGG | + | chr2.3:17728989-17729008 | None:intergenic | 30.0% | |
| TTCTGTGCTAAAATAGGAAA+TGG | - | chr2.3:17728714-17728733 | MS.gene059872:intron | 30.0% | |
| ! | ATTTTCTCTCTCTATTGCTT+TGG | + | chr2.3:17729287-17729306 | None:intergenic | 30.0% |
| ! | CACCAACTTTTTACATATGA+AGG | - | chr2.3:17728743-17728762 | MS.gene059872:intron | 30.0% |
| !! | AATACTTCACTCTGAAGTAA+AGG | - | chr2.3:17729520-17729539 | MS.gene059872:intron | 30.0% |
| !! | CTGTTTCTTTTTCTGCAATT+AGG | - | chr2.3:17728459-17728478 | MS.gene059872:intron | 30.0% |
| !!! | TATTTTAGCACAGAAAGCAA+TGG | + | chr2.3:17728709-17728728 | None:intergenic | 30.0% |
| AAGTGGGAGATATGATTAGT+GGG | + | chr2.3:17729637-17729656 | None:intergenic | 35.0% | |
| AGGAACTGATTACTCTTTGA+TGG | - | chr2.3:17728763-17728782 | MS.gene059872:intron | 35.0% | |
| AGTACACAAAAACCATGTGT+AGG | + | chr2.3:17728441-17728460 | None:intergenic | 35.0% | |
| ATGTGTAAAATGCACTGCTA+GGG | + | chr2.3:17728517-17728536 | None:intergenic | 35.0% | |
| CACCCATTATATATATGCCT+AGG | - | chr2.3:17728657-17728676 | MS.gene059872:intron | 35.0% | |
| GGAACTGATTACTCTTTGAT+GGG | - | chr2.3:17728764-17728783 | MS.gene059872:intron | 35.0% | |
| GTACACAAAAACCATGTGTA+GGG | + | chr2.3:17728440-17728459 | None:intergenic | 35.0% | |
| GTTACGGATAAATGCAATGA+TGG | - | chr2.3:17728558-17728577 | MS.gene059872:intron | 35.0% | |
| TTACACATCCTTTCTATGTG+AGG | - | chr2.3:17728529-17728548 | MS.gene059872:intron | 35.0% | |
| ! | CAAGATGGATTTGTTCATTC+TGG | - | chr2.3:17729578-17729597 | MS.gene059872:intron | 35.0% |
| ! | CTAGGCATATATATAATGGG+TGG | + | chr2.3:17728659-17728678 | None:intergenic | 35.0% |
| ! | GATTGATGGTTTATGATGTG+TGG | - | chr2.3:17728915-17728934 | MS.gene059872:intron | 35.0% |
| !! | AAAATTCCTGCTTTGGAAGT+GGG | + | chr2.3:17729653-17729672 | None:intergenic | 35.0% |
| AGTGGGAAGAAGCTTGATTT+AGG | + | chr2.3:17729620-17729639 | None:intergenic | 40.0% | |
| GAAGTGGGAGATATGATTAG+TGG | + | chr2.3:17729638-17729657 | None:intergenic | 40.0% | |
| GATGTGTAAAATGCACTGCT+AGG | + | chr2.3:17728518-17728537 | None:intergenic | 40.0% | |
| GTTCATTCTGGACAAACTGA+GGG | - | chr2.3:17729590-17729609 | MS.gene059872:intron | 40.0% | |
| TACAAGTCACATGAACCAGT+GGG | + | chr2.3:17729497-17729516 | None:intergenic | 40.0% | |
| TCCAAACCACATGGTTATAG+AGG | + | chr2.3:17728949-17728968 | None:intergenic | 40.0% | |
| TGTTCATTCTGGACAAACTG+AGG | - | chr2.3:17729589-17729608 | MS.gene059872:intron | 40.0% | |
| TGTTGACCATATACGATGCT+TGG | - | chr2.3:17729546-17729565 | MS.gene059872:intron | 40.0% | |
| TTAGCACAGAAAGCAATGGA+AGG | + | chr2.3:17728705-17728724 | None:intergenic | 40.0% | |
| ! | ATAACCATGTGGTTTGGAGT+TGG | - | chr2.3:17728951-17728970 | MS.gene059872:intron | 40.0% |
| ! | ATCAAGCCAAGCATCGTATA+TGG | + | chr2.3:17729555-17729574 | None:intergenic | 40.0% |
| ! | TAACCATGTGGTTTGGAGTT+GGG | - | chr2.3:17728952-17728971 | MS.gene059872:intron | 40.0% |
| !! | CAAAATTCCTGCTTTGGAAG+TGG | + | chr2.3:17729654-17729673 | None:intergenic | 40.0% |
| ACACGTGTCCTCACATAGAA+AGG | + | chr2.3:17728540-17728559 | None:intergenic | 45.0% | |
| ATATCTCCCACTTCCAAAGC+AGG | - | chr2.3:17729644-17729663 | MS.gene059872:CDS | 45.0% | |
| CTACAAGTCACATGAACCAG+TGG | + | chr2.3:17729498-17729517 | None:intergenic | 45.0% | |
| CTATGTGAGGACACGTGTTA+CGG | - | chr2.3:17728542-17728561 | MS.gene059872:intron | 45.0% | |
| GCCTCTATAACCATGTGGTT+TGG | - | chr2.3:17728945-17728964 | MS.gene059872:intron | 45.0% | |
| TCGAAGCCTCTATAACCATG+TGG | - | chr2.3:17728940-17728959 | MS.gene059872:intron | 45.0% | |
| ! | CTGTTGAAGTACCCTACACA+TGG | - | chr2.3:17728426-17728445 | MS.gene059872:CDS | 45.0% |
| ! | GCTTGGCTTGATCTTCAAGA+TGG | - | chr2.3:17729563-17729582 | MS.gene059872:intron | 45.0% |
| !! | CACTGGTTCATGTGACTTGT+AGG | - | chr2.3:17729496-17729515 | MS.gene059872:intron | 45.0% |
| !! | TTTGGTTGATAAGCACCCAC+TGG | - | chr2.3:17729479-17729498 | MS.gene059872:intron | 45.0% |
| !! | AAATTAAAATATAAAAATGA+TGG | + | chr2.3:17728386-17728405 | None:intergenic | 5.0% |
| !!! | TGAATATTTTTTATATTATT+TGG | - | chr2.3:17729461-17729480 | MS.gene059872:intron | 5.0% |
| AAAATGCACTGCTAGGGTCC+TGG | + | chr2.3:17728511-17728530 | None:intergenic | 50.0% | |
| CGCAAAGGCCTCTTGTATGA+GGG | - | chr2.3:17729043-17729062 | MS.gene059872:intron | 50.0% | |
| GAACCCAACTCCAAACCACA+TGG | + | chr2.3:17728958-17728977 | None:intergenic | 50.0% | |
| GCAAAGGCCTCTTGTATGAG+GGG | - | chr2.3:17729044-17729063 | MS.gene059872:intron | 50.0% | |
| GTACACTGCTTCTGCAGGTA+TGG | - | chr2.3:17728580-17728599 | MS.gene059872:intron | 50.0% | |
| TGACATGCCCCTCATACAAG+AGG | + | chr2.3:17729054-17729073 | None:intergenic | 50.0% | |
| TGATGGTACACTGCTTCTGC+AGG | - | chr2.3:17728575-17728594 | MS.gene059872:intron | 50.0% | |
| TGCTAGGGTCCTGGATAACA+AGG | + | chr2.3:17728502-17728521 | None:intergenic | 50.0% | |
| TGTCCATGCTTCAAGCGCAA+AGG | - | chr2.3:17729028-17729047 | MS.gene059872:intron | 50.0% | |
| AGGCCTTTGCGCTTGAAGCA+TGG | + | chr2.3:17729034-17729053 | None:intergenic | 55.0% | |
| GCGCAAAGGCCTCTTGTATG+AGG | - | chr2.3:17729042-17729061 | MS.gene059872:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.3 | gene | 17728309 | 17729677 | 17728309 | ID=MS.gene059872 |
| chr2.3 | mRNA | 17728309 | 17729677 | 17728309 | ID=MS.gene059872.t1;Parent=MS.gene059872 |
| chr2.3 | exon | 17729619 | 17729677 | 17729619 | ID=MS.gene059872.t1.exon1;Parent=MS.gene059872.t1 |
| chr2.3 | CDS | 17729619 | 17729677 | 17729619 | ID=cds.MS.gene059872.t1;Parent=MS.gene059872.t1 |
| chr2.3 | exon | 17729390 | 17729474 | 17729390 | ID=MS.gene059872.t1.exon2;Parent=MS.gene059872.t1 |
| chr2.3 | CDS | 17729390 | 17729474 | 17729390 | ID=cds.MS.gene059872.t1;Parent=MS.gene059872.t1 |
| chr2.3 | exon | 17728309 | 17728468 | 17728309 | ID=MS.gene059872.t1.exon3;Parent=MS.gene059872.t1 |
| chr2.3 | CDS | 17728309 | 17728468 | 17728309 | ID=cds.MS.gene059872.t1;Parent=MS.gene059872.t1 |
| Gene Sequence |
| Protein sequence |
