AlfalfaGEDB | MS.gene072834

M. sativa cultivar XinJiangDaYe / MS.gene072834

KEGG: -
GO: GO:0000160 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0007165 GO:0008150 GO:0009987 GO:0035556 GO:0050789 GO:0050794 GO:0065007 GO:0097159 GO:0140110 GO:1901363
PFAM: PF00072.27 PF00249.34

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene072834.t1	XP_003603312.1	92.9	645	10	1	1	609	1	645	0.00E+00	1086.6

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene072834.t1	B8AEH1	57.3	370	137	9	6	358	18	383	4.4e-96	353.6

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene072834.t1	G7J9W3	92.9	645	10	1	1	609	1	645	0.0e+00	1086.6

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene072834.t1	TF	GARP-ARR-B

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene059061	MS.gene072834	0.813427	2.57E-51	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene072834.t1	MTR_3g106220	92.868	645	10	1	1	609	1	645	0.0	1225
MS.gene072834.t1	MTR_1g013170	51.264	554	193	17	6	541	3	497	9.92e-155	454
MS.gene072834.t1	MTR_1g013180	47.030	623	196	21	6	596	154	674	1.81e-143	432
MS.gene072834.t1	MTR_2g450070	38.986	690	312	16	6	606	16	685	1.21e-130	399
MS.gene072834.t1	MTR_2g450070	46.138	492	202	8	6	447	16	494	7.70e-126	386
MS.gene072834.t1	MTR_7g117705	59.184	343	102	6	6	338	3	317	6.77e-118	358
MS.gene072834.t1	MTR_2g034960	47.619	378	160	8	6	373	27	376	1.36e-100	318
MS.gene072834.t1	MTR_1g032570	55.290	293	119	3	4	286	7	297	3.30e-98	313
MS.gene072834.t1	MTR_4g121020	57.565	271	83	3	6	263	29	280	1.47e-97	313
MS.gene072834.t1	MTR_4g121020	57.565	271	83	3	6	263	29	280	1.59e-97	312

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene072834.t1	AT2G25180	57.713	376	116	12	6	359	11	365	4.47e-126	384
MS.gene072834.t1	AT4G31920	49.876	403	142	8	6	372	11	389	7.70e-110	341
MS.gene072834.t1	AT3G16857	55.674	282	93	5	8	266	33	305	4.81e-95	306
MS.gene072834.t1	AT3G16857	55.674	282	93	5	8	266	33	305	1.21e-94	305
MS.gene072834.t1	AT5G58080	49.319	367	145	9	2	349	8	352	1.48e-92	298
MS.gene072834.t1	AT2G01760	56.538	260	110	3	6	262	5	264	2.00e-86	274
MS.gene072834.t1	AT1G67710	57.769	251	97	4	9	256	8	252	4.64e-82	267
MS.gene072834.t1	AT2G01760	51.042	288	110	4	6	262	5	292	2.12e-80	259
MS.gene072834.t1	AT3G16857	54.733	243	78	5	47	266	2	235	1.18e-75	253
MS.gene072834.t1	AT2G01760	54.774	199	87	3	67	262	1	199	1.46e-56	194

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Find 151 sgRNAs with CRISPR-Local

Find 318 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAAAGACAAGTTTGACC+TGG	0.671629	3.3:-87203383	MS.gene072834:CDS
AAACACGGAGGTATAGGAAT+AGG	0.439930	3.3:-87201786	MS.gene072834:CDS
AAACCAACAAGCTAGTATGG+TGG	0.708833	3.3:-87202266	MS.gene072834:CDS
AAAGAAGCCATGTTATCTGA+AGG	0.609057	3.3:+87201597	None:intergenic
AAAGCTGACTAAGAAAAGAA+AGG	0.566687	3.3:-87202906	MS.gene072834:CDS
AAATATCACAAGGGAGAACG+TGG	0.641409	3.3:-87202426	MS.gene072834:CDS
AAATTACCGTTTATATACTC+AGG	0.541639	3.3:+87201501	None:intergenic
AACACTCCAACTAGTCTTAA+CGG	0.404206	3.3:-87202136	MS.gene072834:CDS
AACGGTAATTTGCCATTTCA+AGG	0.393348	3.3:-87201489	MS.gene072834:CDS
AACTCTCTTGCTCCAGTTAA+CGG	0.366243	3.3:-87201408	MS.gene072834:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGCTGACTAAGAAAAGAA+AGG	-	chr3.3:87202237-87202256	MS.gene072834:CDS	30.0%
AAGTCAACACACTATGAATT+TGG	+	chr3.3:87200980-87200999	None:intergenic	30.0%
ACAACATGCTATATACTCAA+CGG	+	chr3.3:87204399-87204418	None:intergenic	30.0%
ACTTAATTATGTGCTTGCTT+GGG	-	chr3.3:87201140-87201159	MS.gene072834:intron	30.0%
AGAAAATTCTGAATGTTGAG+AGG	+	chr3.3:87203409-87203428	None:intergenic	30.0%
ATAAAATTCAGTAAAGCTCG+AGG	+	chr3.3:87202457-87202476	None:intergenic	30.0%
ATCCTATGTGAATGTTCTAA+AGG	+	chr3.3:87204333-87204352	None:intergenic	30.0%
CAAGGAAATAATGTTTGAGA+TGG	+	chr3.3:87204067-87204086	None:intergenic	30.0%
CGTTAATCAGAATATTCTTC+AGG	-	chr3.3:87203129-87203148	MS.gene072834:CDS	30.0%
GAAACATTCAGTGAAAGAAA+TGG	+	chr3.3:87202798-87202817	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.3	gene	87200547	87204618	87200547	ID=MS.gene072834
chr3.3	mRNA	87200547	87204618	87200547	ID=MS.gene072834.t1;Parent=MS.gene072834
chr3.3	exon	87204507	87204618	87204507	ID=MS.gene072834.t1.exon1;Parent=MS.gene072834.t1
chr3.3	CDS	87204507	87204618	87204507	ID=cds.MS.gene072834.t1;Parent=MS.gene072834.t1
chr3.3	exon	87203299	87203451	87203299	ID=MS.gene072834.t1.exon2;Parent=MS.gene072834.t1
chr3.3	CDS	87203299	87203451	87203299	ID=cds.MS.gene072834.t1;Parent=MS.gene072834.t1
chr3.3	exon	87202765	87203163	87202765	ID=MS.gene072834.t1.exon3;Parent=MS.gene072834.t1
chr3.3	CDS	87202765	87203163	87202765	ID=cds.MS.gene072834.t1;Parent=MS.gene072834.t1
chr3.3	exon	87202412	87202488	87202412	ID=MS.gene072834.t1.exon4;Parent=MS.gene072834.t1
chr3.3	CDS	87202412	87202488	87202412	ID=cds.MS.gene072834.t1;Parent=MS.gene072834.t1
chr3.3	exon	87201995	87202326	87201995	ID=MS.gene072834.t1.exon5;Parent=MS.gene072834.t1
chr3.3	CDS	87201995	87202326	87201995	ID=cds.MS.gene072834.t1;Parent=MS.gene072834.t1
chr3.3	exon	87201203	87201887	87201203	ID=MS.gene072834.t1.exon6;Parent=MS.gene072834.t1
chr3.3	CDS	87201203	87201887	87201203	ID=cds.MS.gene072834.t1;Parent=MS.gene072834.t1
chr3.3	exon	87200547	87200618	87200547	ID=MS.gene072834.t1.exon7;Parent=MS.gene072834.t1
chr3.3	CDS	87200547	87200618	87200547	ID=cds.MS.gene072834.t1;Parent=MS.gene072834.t1

Gene Sequence

>MS.gene072834

ATGGATGATTCCGGTGACCGTTTTCCCATCGGAATGCGTGTTCTCGCCGTTGACGACGATCCAACTTGTCTCATGGTTTTGGAAACTCTTCTCCGTAGATGTCAATACCACGGTCAGATTCGGATCTAGTGTTTTTTATTTTGATTAAAGTTTTCATTTCTATGCTCTATTTATGTGTATAATCAATGTATCATGATAATTCATAAGTCAATGATATGTGTATAGATATGATTAATTTTTTATATTTATTTTTAGTTTATAAGTGTATAATTGCAATTCCAGAAATTCAAATAAAAAAAAACATGTCTTTAGGATCAAATCTAACTGGGAAATGGAGTTAGGTAGAAATTAACGATATTGTGTAGATATTTGGAACTTTTACTAAGAATAAAGGTAAGATGAAAAGAGTCATGATTTAGGGTCAAAGGTTCCAAATTCATAGTGTGTTGACTTATTTTGACTGACTAACTCCCTGTGATAGTATAAAGAAACAATTTTTACAGATTTTATGTGGAGTTTAATCTTATTTCGTCTACGCTTGTAAAAGCAGCGTCTGCATAGATTCTTATATGATAAACACTTATTGAATAATCACTTAATTATGTGCTTGCTTGGGTAATGTATCCAAGCATATTTTTACTAGATATGTGAAGGATATTCCGTAATTAGAGCTTCATTGCTTGTAGAGGTAGTACCGTAGTAGGAAAAGTTGCTCATAGTGCATAATATATTTCATTTTGTTTAGTGGCTTTGGACTGAATATGCACTTTATGGTCAACCATTTTTTGTTTTGGTGTTAATCCTCTGCTCTCGAGGGAAGGACCCCTCTCAAGGGGAGGCCTCCTAATATTCCGGAGTTTAGTCAGGGAGGTAATTGAACTCGGGTTCCGCCTGTGAATCAAGCTCGGGTTCTCTCGAATGATTCCTCCTAGGGGGGCTCCTTAACCTCTTGATCCCAATCACTTGGTTATAGTCAACCATTTTTCTTTTCTTGTCTTTGCTCTTGTAACTGTTGTTGCTTAGATTTCAGGATCCTGTATTTCTTCATGATTAGTAATTTTCTTTGACAAACATTTCACTGTTGCTTTCTTTATTGGATGTATATTGTAAATATGATGTGAACTTTGCTTATTCAAAGTGATACTTATTTCTGATTGGGGATTGCAGTAACCACAACTAGTCAAGCAATAACAGCGTTGACCATGTTGAGAGAAAACAAAGACAAGTTTGACCTGGTAATCAGTGATGTGCACATGCCTGACATGGATGGATTTAAGCTGCTTGAACTTGTGGGACTTGAAATGGACCTTCCCGTCATAAGTAAGTGGGGATCTGTCATGTAATCCTCAGCTGTTAATTTTTTTCTTCCTTTTCTATTTATTCATTTTGACTCTTGTTTATTGGTACGACTGCTAATCAATGATACTTTTGCTGTTATAAAATGTTTGATTTCAGTGTTGTCTGCATATGGTGATACAAAGCTGGTGATGAAAGGAATTTCCCATGGTGCCTGTGATTATCTGCTGAAACCTGTGAGATTAGAGGAGCTAAAGAACATTTGGCAGCATGTAATTAGGAAGAAGAAGTCTGATCCAAAGGAGAAAAACAAAACCAGTAAACCAGACAAAACTACTTCTGATAGTGGCAGTGGACTAAGATCCGCAGGAGCAGAAAATTCAGATGAAAATGGAAAGCTGACTAAGAAAAGAAAGGATCAGGATGAAGACGAAGATGAGGATAAAGAGAATGGTAATGACAACGAGGACCCATCAGCTCAGAAGAAGCCTCGGGTTGTTTGGTCTGTGGAGCTGCACCGCAAGTTTGTTGCTGCTGTTAATCAGTTAGGCATTGACAGTATGTTCTTCACTCTGCCTGCAACACAAACAATTTTTATATCTTATCAATTTCCTCGAGCTTTACTGAATTTTATTTCAAATTTTACATTATCAAAATGTTTTTGAATATCTGGTTCGATGTTTATTTTAAATCCTAGGTTTAAAATGACTTATGATGATAGATGCCACTTGGGATGAATTTCATTTCTGAATCATCACTCAAATTTAAGCCATGTCATAAAGTATTCCATTACTGAATTTGAGTATTATGTTAATAATGTTGTTTTACTTGCAGAGGCTGTGCCCAAAAAAATTCTTGATATGATGAATGTCGAAAATATCACAAGGGAGAACGTGGCAAGCCATCTCCAGGTATTTTTCTAGTTCTTTACACTTTAATTTATGTAAGTTAACCATTTCTTTCACTGAATGTTTCGGGTTTATGAAATGGCTGCAGAAGTATAGACTTTATCTGAAAAGAATTAGCTGTGTTGCAAACCAACAAGCTAGTATGGTGGCAGCCTTAGGGAGTGCAGATCAATCTTATTTGAGAATGGGTGGTTCTGGACATTTTCACAATAATGCTTTCAGATCCTTTTCACCTAGTGGGATAATTGGTAATCTGAACACTCCAACTAGTCTTAACGGGCATGGATTTTCTCCTTCGGGGCTTCTTCAGTTGGGCCAATCACGTAATTTAAACAATTCTTCCAATGATCAACTTAAATTCCAGTCAGCCATAACTCCCGTTAATCAGAATATTCTTCAGGGAATGCCAATGTCCATAGGGTTTGATCACTTGCAAAACAGCAAGGGTGTTATCTCTGTTCAAAACCTGAATACTGATGTGAAAACAACTTTTCCCATCCAAATAAATTCCCGGATCAACGGCCAAGTTTTGCCACCTCTAGTTCTCATCCCCCAAGTCTCGGTATCTCAAACAATGGCTTGATGTCGGATACGCACCCTGAAAGAAAACACGGAGGTATAGGAATAGGATATGGAAGTTCATCTTCTTCAGTAGCCTCTCAACATTCAGAATTTTCTTTCTCTATGCTGGATCAAGGTAGGCACGGTGATAATTGGTCAAGCGACGTACCGTTATCTGGAATCCAAACAAATTCTTTCTCTTCAAGTGAATGTTTTAGACAGACAGCTGTTCCTCCTTCAGATAACATGGCTTCTTTGCCCTTGCAAGCGGGGTATCCTGGTGGTTCGTTGCCAGATATGCACTCCCAAGGAATGATTTTTACTAATTCACCTGAGTATATAAACGGTAATTTGCCATTTCAAGGATGGGAAGACCGTAATCAGGATGCTACTTACCACTCAAATGTTACTTGTGGATCAATGAACTCTCTTGCTCCAGTTAACGGTGCCGTTTTTCCACCAGGCCAGACAACAACTAGCTCCACCTTGGATACTAAATTTTTTAATCCCATACAAATGAAGCATGCTGGATTTGCCGAGTTAACTGAATGCAGCTCATCAAGACAATCTCCAGCTAATATCATAAGCCAGCAGAAGTTTTCTAATAATCTTGGTTCACTGGAATACTTGGCGAGTTCAATGATGGGACAGGTAATAACATTTTTTGAATATAATGTTGGTTTTCCCATAAATGCTTCTGTATGGCTTCTTTAACATGTATAGTTTTTTTTGCATATGGTTGATACTTGATACCATCTCAAACATTATTTCCTTGACCACACATACTGATTAGATTATAAAAGTACAATCAGTAGCTTTAGAAAGACATACTCCAGTCAGCATGGTTATATTTGTCTTATTCCCGAGAGAAGACTTAAAATCATTACATTGTCAGCATTGAAATTTGAAGATTTAAATTGGTGGAACTCTGTATTGTTGAAACTTTACGAGCCATATATTTCATTGATGTTCTTTGTGATGGATCTGCTAGCCAATTAACCACCGTAACTTTCGATGTCCTTTAGAACATTCACATAGGATGAAAACATTTGTTTTTCTATCCTGGATTGGTACAATAACTTGTCCGTTGAGTATATAGCATGTTGTTTTATTTAACTTAGGTTTAGCATCTTTAAAGTATGCAATGCTCGTTTGGTTGCTGTATCTTGTTTCTTGCCCCTTGTCCTAAATATTTTGCTTCCATAGTAATTTGATACCATGTTCATGACATGCAGGAGCAAGATAAGATGAAATTATTGGGTGGAGACTTCATATGCGATAATTACTCCGACGGGGTATCTTTGTGA

Protein sequence

>MS.gene072834.t1

MDDSGDRFPIGMRVLAVDDDPTCLMVLETLLRRCQYHVTTTSQAITALTMLRENKDKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIMLSAYGDTKLVMKGISHGACDYLLKPVRLEELKNIWQHVIRKKKSDPKEKNKTSKPDKTTSDSGSGLRSAGAENSDENGKLTKKRKDQDEDEDEDKENGNDNEDPSAQKKPRVVWSVELHRKFVAAVNQLGIDKAVPKKILDMMNVENITRENVASHLQKYRLYLKRISCVANQQASMVAALGSADQSYLRMGGSGHFHNNAFRSFSPSGIIGNLNTPTSLNGHGFSPSGLLQLGQSRNLNNSSNDQLKFQSAITPVNQNILQGMPMSIGFATSSSHPPSLGISNNGLMSDTHPERKHGGIGIGYGSSSSSVASQHSEFSFSMLDQGRHGDNWSSDVPLSGIQTNSFSSSECFRQTAVPPSDNMASLPLQAGYPGGSLPDMHSQGMIFTNSPEYINGNLPFQGWEDRNQDATYHSNVTCGSMNSLAPVNGAVFPPGQTTTSSTLDTKFFNPIQMKHAGFAELTECSSSRQSPANIISQQKFSNNLGSLEYLASSMMGQEQDKMKLLGGDFICDNYSDGVSL