Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072886.t1 | XP_003603391.1 | 92.7 | 560 | 32 | 5 | 1 | 556 | 65 | 619 | 5.10E-284 | 986.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072886.t1 | G7JB14 | 92.7 | 560 | 32 | 5 | 1 | 556 | 65 | 619 | 3.7e-284 | 986.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049281 | MS.gene072886 | 0.808718 | 2.70E-50 | -1.69E-46 |
| MS.gene050363 | MS.gene072886 | 0.822383 | 2.44E-53 | -1.69E-46 |
| MS.gene054959 | MS.gene072886 | 0.806663 | 7.37E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072886.t1 | MTR_3g107090 | 91.964 | 560 | 36 | 5 | 1 | 556 | 65 | 619 | 0.0 | 959 |
| MS.gene072886.t1 | MTR_1g056180 | 50.157 | 319 | 118 | 5 | 260 | 540 | 419 | 734 | 1.57e-100 | 320 |
| MS.gene072886.t1 | MTR_7g106540 | 48.387 | 310 | 125 | 6 | 260 | 538 | 211 | 516 | 8.34e-89 | 284 |
| MS.gene072886.t1 | MTR_7g106540 | 48.418 | 316 | 128 | 7 | 260 | 544 | 408 | 719 | 6.95e-87 | 284 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072886.t1 | AT2G25460 | 37.794 | 553 | 258 | 17 | 1 | 533 | 52 | 538 | 3.43e-98 | 308 |
| MS.gene072886.t1 | AT3G11760 | 51.736 | 288 | 119 | 4 | 260 | 536 | 417 | 695 | 7.30e-96 | 307 |
| MS.gene072886.t1 | AT5G04860 | 46.705 | 349 | 150 | 8 | 221 | 538 | 236 | 579 | 1.78e-91 | 293 |
| MS.gene072886.t1 | AT5G04860 | 45.658 | 357 | 158 | 8 | 221 | 546 | 387 | 738 | 7.69e-90 | 293 |
| MS.gene072886.t1 | AT2G25460 | 34.625 | 413 | 205 | 14 | 2 | 395 | 53 | 419 | 1.32e-53 | 188 |
| MS.gene072886.t1 | AT2G10560 | 43.515 | 239 | 105 | 7 | 333 | 546 | 1 | 234 | 3.99e-53 | 182 |
Find 111 sgRNAs with CRISPR-Local
Find 194 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCAAGGAAATTCAAGTAAA+TGG | 0.143807 | 3.2:+87289037 | MS.gene072886:CDS |
| CAACTAACTATGTAAATTCT+TGG | 0.246132 | 3.2:-87289504 | None:intergenic |
| AAACACGGGACTATAGAAAA+AGG | 0.282626 | 3.2:+87288019 | MS.gene072886:CDS |
| CTTGTCTTTGTCCCTGAACT+TGG | 0.295468 | 3.2:-87288220 | None:intergenic |
| TCTAAATCAAAATGTTTATC+TGG | 0.298751 | 3.2:-87289309 | None:intergenic |
| GGAAAACTCCTTCTCACGTT+TGG | 0.315799 | 3.2:+87286899 | MS.gene072886:CDS |
| TAAAGATGAAGAAGTTAATA+AGG | 0.320412 | 3.2:+87289668 | MS.gene072886:CDS |
| TTACTATATCATTGATTCAT+TGG | 0.323701 | 3.2:+87289566 | MS.gene072886:CDS |
| GAGAAGTTTCATTGCTTAGA+AGG | 0.338959 | 3.2:+87289405 | MS.gene072886:CDS |
| CTTTATTACAGGTTTGTCTA+AGG | 0.339470 | 3.2:+87287924 | MS.gene072886:intron |
| TTGGTATACCTTGATTTGTA+TGG | 0.347267 | 3.2:-87289200 | None:intergenic |
| TTGAGAAAGAGGAGAAGAAA+TGG | 0.356522 | 3.2:+87289808 | MS.gene072886:CDS |
| TACTATATCATTGATTCATT+GGG | 0.366292 | 3.2:+87289567 | MS.gene072886:CDS |
| GAAGATGTGGAAGAGGATAA+AGG | 0.367369 | 3.2:-87289888 | None:intergenic |
| GAAAACTCCTTCTCACGTTT+GGG | 0.368015 | 3.2:+87286900 | MS.gene072886:CDS |
| TTCAGGGACAAAGACAAGTT+TGG | 0.368520 | 3.2:+87288225 | MS.gene072886:CDS |
| AATCATCGAAGCTACCCTTT+TGG | 0.370953 | 3.2:+87287219 | MS.gene072886:CDS |
| AACAACTAAAGGTCTCAAAT+TGG | 0.378951 | 3.2:-87289346 | None:intergenic |
| TTCAAAGGAAGCTTCCTATA+CGG | 0.379927 | 3.2:+87287179 | MS.gene072886:CDS |
| TGCCGTAGATTCGTCGCTGC+CGG | 0.386738 | 3.2:+87286877 | MS.gene072886:CDS |
| CAAGAATTTACATAGTTAGT+TGG | 0.387389 | 3.2:+87289505 | MS.gene072886:CDS |
| GACCTCTGTGTCTTCAACCT+TGG | 0.397971 | 3.2:+87286931 | MS.gene072886:CDS |
| CTTCCTTTGAACATTGGATT+CGG | 0.408918 | 3.2:-87287167 | None:intergenic |
| TCTCTAAGATCAAACCTTCA+AGG | 0.409683 | 3.2:+87289021 | MS.gene072886:CDS |
| ATTTACTTGAATTTCCTTGA+AGG | 0.411143 | 3.2:-87289035 | None:intergenic |
| GATGATTCATGTGTGATGTA+TGG | 0.412386 | 3.2:+87289636 | MS.gene072886:CDS |
| TCTAAGCAATGAAACTTCTC+AGG | 0.424509 | 3.2:-87289402 | None:intergenic |
| TGTGTATAGGGACAGGGTGG+TGG | 0.426747 | 3.2:+87287073 | MS.gene072886:intron |
| GGAAGAACCAAAAGGTAAAA+TGG | 0.433515 | 3.2:+87287096 | MS.gene072886:CDS |
| CAAGTTTGGATATCAATAGA+AGG | 0.433928 | 3.2:+87288239 | MS.gene072886:CDS |
| GATGAAGAAGTTAATAAGGA+TGG | 0.435976 | 3.2:+87289672 | MS.gene072886:CDS |
| TCAAGGAAATTCAAGTAAAT+GGG | 0.436962 | 3.2:+87289038 | MS.gene072886:CDS |
| AATCCATCAAACTCCTTTCA+CGG | 0.437364 | 3.2:+87288312 | MS.gene072886:CDS |
| GTCTAAGGTTATTGAAGCAC+AGG | 0.440478 | 3.2:+87287939 | MS.gene072886:CDS |
| CCTATACGGTTGAAGGTCAA+TGG | 0.445443 | 3.2:+87287193 | MS.gene072886:CDS |
| ATACCGTGAAAGGAGTTTGA+TGG | 0.448932 | 3.2:-87288315 | None:intergenic |
| GGGGACCCATCTGACTCATA+TGG | 0.466820 | 3.2:-87288106 | None:intergenic |
| GAAAATCAATCTGCAATTGC+CGG | 0.467500 | 3.2:-87289854 | None:intergenic |
| AGTTAGACAACTTGAGAAAG+AGG | 0.469446 | 3.2:+87289797 | MS.gene072886:CDS |
| GAAGCTTCCTATACGGTTGA+AGG | 0.474253 | 3.2:+87287186 | MS.gene072886:CDS |
| GTGTATAGGGACAGGGTGGT+GGG | 0.476052 | 3.2:+87287074 | MS.gene072886:intron |
| CACTGGCTCCATACAAATCA+AGG | 0.476684 | 3.2:+87289192 | MS.gene072886:CDS |
| GGATATCAATAGAAGGTTCA+AGG | 0.483015 | 3.2:+87288246 | MS.gene072886:CDS |
| TCACACAAGGTTCATCTGAA+TGG | 0.483310 | 3.2:+87289247 | MS.gene072886:CDS |
| CCATTGACCTTCAACCGTAT+AGG | 0.487380 | 3.2:-87287193 | None:intergenic |
| AGGAAGCTTCCTTTGAACAT+TGG | 0.488002 | 3.2:-87287173 | None:intergenic |
| AAAGTAACTCTTGACTCTGT+GGG | 0.490195 | 3.2:-87288196 | None:intergenic |
| GCCGTAGATTCGTCGCTGCC+GGG | 0.491896 | 3.2:+87286878 | MS.gene072886:CDS |
| TTGTCAAATTGAGTTCTTGT+TGG | 0.492779 | 3.2:-87289219 | None:intergenic |
| TGCAATTGCCGGTGAAGATA+AGG | 0.492998 | 3.2:-87289843 | None:intergenic |
| CTTTGATCAACGAAGTGAAA+AGG | 0.494079 | 3.2:+87289125 | MS.gene072886:CDS |
| GGCAGACATGTTTGAGTCCA+AGG | 0.501776 | 3.2:-87286948 | None:intergenic |
| TTTCAAATCCTTATCTTCAC+CGG | 0.501952 | 3.2:+87289835 | MS.gene072886:CDS |
| ATGAAGAAGTTAATAAGGAT+GGG | 0.505362 | 3.2:+87289673 | MS.gene072886:CDS |
| TCCCGGCAGCGACGAATCTA+CGG | 0.508314 | 3.2:-87286879 | None:intergenic |
| TTCTGAGGCAGAACAACTAA+AGG | 0.508890 | 3.2:-87289357 | None:intergenic |
| TGAACTGCCACCGCTTGTTG+TGG | 0.511778 | 3.2:-87288161 | None:intergenic |
| TGTATAGGGACAGGGTGGTG+GGG | 0.520486 | 3.2:+87287075 | MS.gene072886:intron |
| GATATCAATAGAAGGTTCAA+GGG | 0.528253 | 3.2:+87288247 | MS.gene072886:CDS |
| GCAGGGAGTGATATGACTGC+AGG | 0.531153 | 3.2:-87286857 | None:intergenic |
| GGCAGCGACGAATCTACGGC+AGG | 0.532444 | 3.2:-87286875 | None:intergenic |
| ATGATTCATGTGTGATGTAT+GGG | 0.535106 | 3.2:+87289637 | MS.gene072886:CDS |
| TAGAATTGACATACCGTGAA+AGG | 0.538980 | 3.2:-87288325 | None:intergenic |
| CAACATCCATATGAGTCAGA+TGG | 0.542549 | 3.2:+87288100 | MS.gene072886:CDS |
| CAACATAGAAGATGTGGAAG+AGG | 0.543261 | 3.2:-87289895 | None:intergenic |
| GAAATACAACATAGAAGATG+TGG | 0.546990 | 3.2:-87289901 | None:intergenic |
| CAACGAAGTGAAAAGGCCTC+TGG | 0.548675 | 3.2:+87289132 | MS.gene072886:CDS |
| CTTAACAAATGAACATCTAG+AGG | 0.549150 | 3.2:+87289923 | MS.gene072886:CDS |
| AAGAATGGAGCGTACCAAAA+GGG | 0.552626 | 3.2:-87287233 | None:intergenic |
| TGAAGAAGTTAATAAGGATG+GGG | 0.560236 | 3.2:+87289674 | MS.gene072886:CDS |
| AACAATGTGAAGTTTGATGA+AGG | 0.564539 | 3.2:+87288070 | MS.gene072886:CDS |
| CAATAGAAGGTTCAAGGGGT+GGG | 0.566587 | 3.2:+87288252 | MS.gene072886:CDS |
| AGCAATAACCTTTGAAAACA+CGG | 0.571826 | 3.2:+87287982 | MS.gene072886:CDS |
| AACATCCATATGAGTCAGAT+GGG | 0.577022 | 3.2:+87288101 | MS.gene072886:CDS |
| TCAATAGAAGGTTCAAGGGG+TGG | 0.579144 | 3.2:+87288251 | MS.gene072886:CDS |
| TGATTGTCCCAAACGTGAGA+AGG | 0.581864 | 3.2:-87286907 | None:intergenic |
| TAGTTGCACTAATATCTCAC+TGG | 0.582311 | 3.2:+87289175 | MS.gene072886:CDS |
| ACCAAAAGGTAAAATGGTGG+TGG | 0.584450 | 3.2:+87287102 | MS.gene072886:CDS |
| CTAAGCAATGAAACTTCTCA+GGG | 0.586124 | 3.2:-87289401 | None:intergenic |
| TGTAGAAGTTTCTAATTGAG+CGG | 0.593072 | 3.2:-87288290 | None:intergenic |
| AGACCGAATCCAATGTTCAA+AGG | 0.597972 | 3.2:+87287164 | MS.gene072886:CDS |
| AGTTTGTATGACTCTAGCGA+TGG | 0.605787 | 3.2:+87287132 | MS.gene072886:CDS |
| TTGTATGACTCTAGCGATGG+AGG | 0.606457 | 3.2:+87287135 | MS.gene072886:CDS |
| AAAGGTAAAATGGTGGTGGT+CGG | 0.616409 | 3.2:+87287106 | MS.gene072886:CDS |
| GACTCATCAGAGTCAAACAC+AGG | 0.617667 | 3.2:-87288127 | None:intergenic |
| GGTGGTGGGGAAGAACCAAA+AGG | 0.617941 | 3.2:+87287088 | MS.gene072886:CDS |
| AAAAGTAACTCTTGACTCTG+TGG | 0.625814 | 3.2:-87288197 | None:intergenic |
| GAAGAAGTTAATAAGGATGG+GGG | 0.628518 | 3.2:+87289675 | MS.gene072886:CDS |
| AAACCTGTGTATGATTTCTG+AGG | 0.630083 | 3.2:-87289372 | None:intergenic |
| CAGATGAACCTTGTGTGATG+AGG | 0.645553 | 3.2:-87289242 | None:intergenic |
| TTTGACAACCTCATCACACA+AGG | 0.646349 | 3.2:+87289234 | MS.gene072886:CDS |
| CAGGGAGTGATATGACTGCA+GGG | 0.648373 | 3.2:-87286856 | None:intergenic |
| GCAGCGACGAATCTACGGCA+GGG | 0.650761 | 3.2:-87286874 | None:intergenic |
| AACGAATCCACAACAAGCGG+TGG | 0.661870 | 3.2:+87288154 | MS.gene072886:CDS |
| CTGCCTCAGAAATCATACAC+AGG | 0.669234 | 3.2:+87289369 | MS.gene072886:CDS |
| TAAAGTCAGATAAGAAACAC+GGG | 0.683630 | 3.2:+87288005 | MS.gene072886:CDS |
| AAGTAACTCTTGACTCTGTG+GGG | 0.684551 | 3.2:-87288195 | None:intergenic |
| TCGAACGAATCCACAACAAG+CGG | 0.686566 | 3.2:+87288151 | MS.gene072886:CDS |
| TGTGCATGCACTCTCACCAG+AGG | 0.687640 | 3.2:-87289148 | None:intergenic |
| ACTCATCAGAGTCAAACACA+GGG | 0.693622 | 3.2:-87288126 | None:intergenic |
| ATATCAATAGAAGGTTCAAG+GGG | 0.705222 | 3.2:+87288248 | MS.gene072886:CDS |
| GTAAAGTCAGATAAGAAACA+CGG | 0.708686 | 3.2:+87288004 | MS.gene072886:CDS |
| AGAACCAAAAGGTAAAATGG+TGG | 0.711514 | 3.2:+87287099 | MS.gene072886:CDS |
| ACTATGTGTGTATAGGGACA+GGG | 0.728676 | 3.2:+87287067 | MS.gene072886:intron |
| ATGTGTGTATAGGGACAGGG+TGG | 0.746193 | 3.2:+87287070 | MS.gene072886:intron |
| TAAGCAATGAAACTTCTCAG+GGG | 0.754329 | 3.2:-87289400 | None:intergenic |
| ATAAGACATTAAATGTGACG+TGG | 0.758337 | 3.2:-87286969 | None:intergenic |
| GTCCAAGGTTGAAGACACAG+AGG | 0.758408 | 3.2:-87286933 | None:intergenic |
| CAACAACAACAAGAACAAGG+TGG | 0.761901 | 3.2:+87289470 | MS.gene072886:CDS |
| GGAGTGATATGACTGCAGGG+TGG | 0.776711 | 3.2:-87286853 | None:intergenic |
| CTCATCAGAGTCAAACACAG+GGG | 0.787704 | 3.2:-87288125 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAATTATTTAATTAATTAA+CGG | - | chr3.2:87287882-87287901 | None:intergenic | 0.0% |
| !! | TTTAAAAAATTCAATATTCA+AGG | - | chr3.2:87288556-87288575 | None:intergenic | 10.0% |
| !!! | AAATAATTAATTTTTAACGA+AGG | + | chr3.2:87287892-87287911 | MS.gene072886:intron | 10.0% |
| !!! | AAATAGTTTTCTTCAAAAAA+AGG | - | chr3.2:87288531-87288550 | None:intergenic | 15.0% |
| !!! | AAATTTTCTTGATTTAGTTT+AGG | + | chr3.2:87288929-87288948 | MS.gene072886:intron | 15.0% |
| !!! | AATTATTTCTTTATCATTAG+CGG | + | chr3.2:87288594-87288613 | MS.gene072886:intron | 15.0% |
| !!! | AATTTTCTTGATTTAGTTTA+GGG | + | chr3.2:87288930-87288949 | MS.gene072886:intron | 15.0% |
| !! | ACATTGATCTGATAAATATA+TGG | - | chr3.2:87287651-87287670 | None:intergenic | 20.0% |
| !! | GAATGAATTGATTAATTACA+TGG | + | chr3.2:87287419-87287438 | MS.gene072886:intron | 20.0% |
| !! | GATTTGTGAACATAAATAAT+AGG | + | chr3.2:87287573-87287592 | MS.gene072886:intron | 20.0% |
| !! | TAAAGATGAAGAAGTTAATA+AGG | + | chr3.2:87289668-87289687 | MS.gene072886:CDS | 20.0% |
| !! | TAATGTCTTATATGTAAGAT+AGG | + | chr3.2:87286981-87287000 | MS.gene072886:intron | 20.0% |
| !! | TATAGTAATGAAGAAAAGAA+TGG | - | chr3.2:87287251-87287270 | None:intergenic | 20.0% |
| !! | TCTAAATCAAAATGTTTATC+TGG | - | chr3.2:87289312-87289331 | None:intergenic | 20.0% |
| !! | TTGCTTTCTCATTTATTAAT+TGG | + | chr3.2:87287290-87287309 | MS.gene072886:intron | 20.0% |
| !!! | AAATATATTTTAAGCAGAGA+TGG | + | chr3.2:87289066-87289085 | MS.gene072886:CDS | 20.0% |
| !!! | ATATATTTTAGTACGAAACA+TGG | - | chr3.2:87287381-87287400 | None:intergenic | 20.0% |
| !!! | ATTATTTCTTTATCATTAGC+GGG | + | chr3.2:87288595-87288614 | MS.gene072886:intron | 20.0% |
| !!! | ATTTTCTTGATTTAGTTTAG+GGG | + | chr3.2:87288931-87288950 | MS.gene072886:intron | 20.0% |
| !!! | TACTATATCATTGATTCATT+GGG | + | chr3.2:87289567-87289586 | MS.gene072886:CDS | 20.0% |
| !!! | TGATCATTTCTTTATTTTGA+AGG | + | chr3.2:87289530-87289549 | MS.gene072886:CDS | 20.0% |
| !!! | TTACTATATCATTGATTCAT+TGG | + | chr3.2:87289566-87289585 | MS.gene072886:CDS | 20.0% |
| !!! | TTTTGCAAACAATTGATTTT+TGG | - | chr3.2:87287840-87287859 | None:intergenic | 20.0% |
| ! | AAAGTCTATCAAAGATGTAT+TGG | + | chr3.2:87288644-87288663 | MS.gene072886:intron | 25.0% |
| ! | AAGTCTATCAAAGATGTATT+GGG | + | chr3.2:87288645-87288664 | MS.gene072886:intron | 25.0% |
| ! | ACAAATTATTGTATGGTTTG+AGG | + | chr3.2:87288698-87288717 | MS.gene072886:intron | 25.0% |
| ! | AGTTACAAAGAAACAAAGTA+GGG | - | chr3.2:87288431-87288450 | None:intergenic | 25.0% |
| ! | ATGAAGAAGTTAATAAGGAT+GGG | + | chr3.2:87289673-87289692 | MS.gene072886:CDS | 25.0% |
| ! | ATTAGTCCTTTGTCAAAAAA+AGG | + | chr3.2:87288486-87288505 | MS.gene072886:intron | 25.0% |
| ! | ATTTACTTGAATTTCCTTGA+AGG | - | chr3.2:87289038-87289057 | None:intergenic | 25.0% |
| ! | CAAATCAAACAGAATAATGT+TGG | - | chr3.2:87287559-87287578 | None:intergenic | 25.0% |
| ! | CAAATTATTGTATGGTTTGA+GGG | + | chr3.2:87288699-87288718 | MS.gene072886:intron | 25.0% |
| ! | CAACTAACTATGTAAATTCT+TGG | - | chr3.2:87289507-87289526 | None:intergenic | 25.0% |
| ! | CAAGAATTTACATAGTTAGT+TGG | + | chr3.2:87289505-87289524 | MS.gene072886:CDS | 25.0% |
| ! | CATATCCATCTTAAAAATCA+TGG | + | chr3.2:87287457-87287476 | MS.gene072886:intron | 25.0% |
| ! | TAAAACTACACAAATCTTAG+TGG | - | chr3.2:87287745-87287764 | None:intergenic | 25.0% |
| ! | TAGTTACAAAGAAACAAAGT+AGG | - | chr3.2:87288432-87288451 | None:intergenic | 25.0% |
| ! | TCAAGGAAATTCAAGTAAAT+GGG | + | chr3.2:87289038-87289057 | MS.gene072886:CDS | 25.0% |
| ! | TTCAAGGAAATTCAAGTAAA+TGG | + | chr3.2:87289037-87289056 | MS.gene072886:CDS | 25.0% |
| ! | TTGTGAACATAAATAATAGG+TGG | + | chr3.2:87287576-87287595 | MS.gene072886:intron | 25.0% |
| !! | ATTTGTTAGTCATCTGTTAT+CGG | - | chr3.2:87287617-87287636 | None:intergenic | 25.0% |
| !! | CTATGTCTTTTGATGAAATA+TGG | + | chr3.2:87289430-87289449 | MS.gene072886:CDS | 25.0% |
| !! | TTTAATTAATTAACGGGTGT+TGG | - | chr3.2:87287875-87287894 | None:intergenic | 25.0% |
| !!! | GATTTTTAAGATGGATATGA+AGG | - | chr3.2:87287456-87287475 | None:intergenic | 25.0% |
| !!! | TAATAGCCTTTTTTTGACAA+AGG | - | chr3.2:87288495-87288514 | None:intergenic | 25.0% |
| !!! | TTTCTTTATTTTGAAGGTAG+AGG | + | chr3.2:87289536-87289555 | MS.gene072886:CDS | 25.0% |
| !!! | TTTTCTTGATTTAGTTTAGG+GGG | + | chr3.2:87288932-87288951 | MS.gene072886:intron | 25.0% |
| AACAACTAAAGGTCTCAAAT+TGG | - | chr3.2:87289349-87289368 | None:intergenic | 30.0% | |
| AACAATGTGAAGTTTGATGA+AGG | + | chr3.2:87288070-87288089 | MS.gene072886:CDS | 30.0% | |
| AAGACATGAGTTCATAAGTA+AGG | + | chr3.2:87288778-87288797 | MS.gene072886:intron | 30.0% | |
| AAGTGCATGTTAGAAATTGA+TGG | + | chr3.2:87288967-87288986 | MS.gene072886:intron | 30.0% | |
| ATAAGACATTAAATGTGACG+TGG | - | chr3.2:87286972-87286991 | None:intergenic | 30.0% | |
| ATATCAATAGAAGGTTCAAG+GGG | + | chr3.2:87288248-87288267 | MS.gene072886:CDS | 30.0% | |
| ATCAATTGTTTGCAAAAGCA+AGG | + | chr3.2:87287843-87287862 | MS.gene072886:intron | 30.0% | |
| ATGATTCATGTGTGATGTAT+GGG | + | chr3.2:87289637-87289656 | MS.gene072886:CDS | 30.0% | |
| CAAGTTTGGATATCAATAGA+AGG | + | chr3.2:87288239-87288258 | MS.gene072886:CDS | 30.0% | |
| CTTAACAAATGAACATCTAG+AGG | + | chr3.2:87289923-87289942 | MS.gene072886:CDS | 30.0% | |
| CTTTATTACAGGTTTGTCTA+AGG | + | chr3.2:87287924-87287943 | MS.gene072886:intron | 30.0% | |
| GAAATACAACATAGAAGATG+TGG | - | chr3.2:87289904-87289923 | None:intergenic | 30.0% | |
| GATATCAATAGAAGGTTCAA+GGG | + | chr3.2:87288247-87288266 | MS.gene072886:CDS | 30.0% | |
| GATGAAGAAGTTAATAAGGA+TGG | + | chr3.2:87289672-87289691 | MS.gene072886:CDS | 30.0% | |
| GGTGAGTAATACTTTATTAC+AGG | + | chr3.2:87287913-87287932 | MS.gene072886:intron | 30.0% | |
| GTAAAGTCAGATAAGAAACA+CGG | + | chr3.2:87288004-87288023 | MS.gene072886:CDS | 30.0% | |
| TAAAGTCAGATAAGAAACAC+GGG | + | chr3.2:87288005-87288024 | MS.gene072886:CDS | 30.0% | |
| TGAAGAAGTTAATAAGGATG+GGG | + | chr3.2:87289674-87289693 | MS.gene072886:CDS | 30.0% | |
| TGTAGAAGTTTCTAATTGAG+CGG | - | chr3.2:87288293-87288312 | None:intergenic | 30.0% | |
| TTGTCAAATTGAGTTCTTGT+TGG | - | chr3.2:87289222-87289241 | None:intergenic | 30.0% | |
| TTTCAAATCCTTATCTTCAC+CGG | + | chr3.2:87289835-87289854 | MS.gene072886:CDS | 30.0% | |
| TTTGTTAGTCATCTGTTATC+GGG | - | chr3.2:87287616-87287635 | None:intergenic | 30.0% | |
| ! | AGCAATAACCTTTGAAAACA+CGG | + | chr3.2:87287982-87288001 | MS.gene072886:CDS | 30.0% |
| ! | ATGTGTTACTATGTGTGTAT+AGG | + | chr3.2:87287060-87287079 | MS.gene072886:intron | 30.0% |
| ! | TGTGTTACTATGTGTGTATA+GGG | + | chr3.2:87287061-87287080 | MS.gene072886:intron | 30.0% |
| !! | CTCAACCATGATTTTTAAGA+TGG | - | chr3.2:87287465-87287484 | None:intergenic | 30.0% |
| !! | TTGGTATACCTTGATTTGTA+TGG | - | chr3.2:87289203-87289222 | None:intergenic | 30.0% |
| AAAAGTAACTCTTGACTCTG+TGG | - | chr3.2:87288200-87288219 | None:intergenic | 35.0% | |
| AAACACGGGACTATAGAAAA+AGG | + | chr3.2:87288019-87288038 | MS.gene072886:CDS | 35.0% | |
| AAACATGGCATGTGTAATAG+AGG | - | chr3.2:87287366-87287385 | None:intergenic | 35.0% | |
| AAACCTGTGTATGATTTCTG+AGG | - | chr3.2:87289375-87289394 | None:intergenic | 35.0% | |
| AAAGTAACTCTTGACTCTGT+GGG | - | chr3.2:87288199-87288218 | None:intergenic | 35.0% | |
| AACACGGGACTATAGAAAAA+GGG | + | chr3.2:87288020-87288039 | MS.gene072886:CDS | 35.0% | |
| AACATCCATATGAGTCAGAT+GGG | + | chr3.2:87288101-87288120 | MS.gene072886:CDS | 35.0% | |
| AATAATAGGTGGTCTGATAG+CGG | + | chr3.2:87287587-87287606 | MS.gene072886:intron | 35.0% | |
| AATCCATCAAACTCCTTTCA+CGG | + | chr3.2:87288312-87288331 | MS.gene072886:CDS | 35.0% | |
| AATTGTTTGCAAAAGCAAGG+TGG | + | chr3.2:87287846-87287865 | MS.gene072886:intron | 35.0% | |
| AGAACCAAAAGGTAAAATGG+TGG | + | chr3.2:87287099-87287118 | MS.gene072886:CDS | 35.0% | |
| AGAATAATGTTGGTCGTGAA+GGG | - | chr3.2:87287549-87287568 | None:intergenic | 35.0% | |
| AGTTAGACAACTTGAGAAAG+AGG | + | chr3.2:87289797-87289816 | MS.gene072886:CDS | 35.0% | |
| CAACAACAACAACAAGAACA+AGG | + | chr3.2:87289467-87289486 | MS.gene072886:CDS | 35.0% | |
| CTAAGCAATGAAACTTCTCA+GGG | - | chr3.2:87289404-87289423 | None:intergenic | 35.0% | |
| CTTCCTTTGAACATTGGATT+CGG | - | chr3.2:87287170-87287189 | None:intergenic | 35.0% | |
| CTTTGATCAACGAAGTGAAA+AGG | + | chr3.2:87289125-87289144 | MS.gene072886:CDS | 35.0% | |
| GAAAATCAATCTGCAATTGC+CGG | - | chr3.2:87289857-87289876 | None:intergenic | 35.0% | |
| GAAGAAGTTAATAAGGATGG+GGG | + | chr3.2:87289675-87289694 | MS.gene072886:CDS | 35.0% | |
| GAGAAGTTTCATTGCTTAGA+AGG | + | chr3.2:87289405-87289424 | MS.gene072886:CDS | 35.0% | |
| GATGATTCATGTGTGATGTA+TGG | + | chr3.2:87289636-87289655 | MS.gene072886:CDS | 35.0% | |
| GGAAGAACCAAAAGGTAAAA+TGG | + | chr3.2:87287096-87287115 | MS.gene072886:CDS | 35.0% | |
| GGATATCAATAGAAGGTTCA+AGG | + | chr3.2:87288246-87288265 | MS.gene072886:CDS | 35.0% | |
| TAAGCAATGAAACTTCTCAG+GGG | - | chr3.2:87289403-87289422 | None:intergenic | 35.0% | |
| TAGAATTGACATACCGTGAA+AGG | - | chr3.2:87288328-87288347 | None:intergenic | 35.0% | |
| TAGTTGCACTAATATCTCAC+TGG | + | chr3.2:87289175-87289194 | MS.gene072886:CDS | 35.0% | |
| TCGCGCTACAAATTATTGTA+TGG | + | chr3.2:87288691-87288710 | MS.gene072886:intron | 35.0% | |
| TCTAAGCAATGAAACTTCTC+AGG | - | chr3.2:87289405-87289424 | None:intergenic | 35.0% | |
| TCTGATTTCTGCAAAATGAG+AGG | - | chr3.2:87288994-87289013 | None:intergenic | 35.0% | |
| TTCAAAGGAAGCTTCCTATA+CGG | + | chr3.2:87287179-87287198 | MS.gene072886:CDS | 35.0% | |
| TTGAGAAAGAGGAGAAGAAA+TGG | + | chr3.2:87289808-87289827 | MS.gene072886:CDS | 35.0% | |
| ! | CTTTTCACTTCGTTGATCAA+AGG | - | chr3.2:87289127-87289146 | None:intergenic | 35.0% |
| ! | TGAAGGGGTGTATTTATAAG+TGG | - | chr3.2:87287533-87287552 | None:intergenic | 35.0% |
| ! | TGACTTTACCGTGTTTTCAA+AGG | - | chr3.2:87287993-87288012 | None:intergenic | 35.0% |
| !! | TCTCTAAGATCAAACCTTCA+AGG | + | chr3.2:87289021-87289040 | MS.gene072886:CDS | 35.0% |
| !!! | ACTTTTTGAAGGGTGTCAAA+GGG | + | chr3.2:87289596-87289615 | MS.gene072886:CDS | 35.0% |
| !!! | AGAGTTACTTTTCCAAGTTC+AGG | + | chr3.2:87288208-87288227 | MS.gene072886:CDS | 35.0% |
| !!! | AGTTTTGAGATAGTTTGTCG+TGG | + | chr3.2:87289726-87289745 | MS.gene072886:CDS | 35.0% |
| !!! | CGTTAGTTTTGAGCTTTGAT+TGG | - | chr3.2:87289092-87289111 | None:intergenic | 35.0% |
| !!! | GAGGTATTGCCTTCTATTTT+TGG | - | chr3.2:87287347-87287366 | None:intergenic | 35.0% |
| !!! | GAGTTACTTTTCCAAGTTCA+GGG | + | chr3.2:87288209-87288228 | MS.gene072886:CDS | 35.0% |
| !!! | GGTTTTAAGGTACGATGAAA+GGG | - | chr3.2:87286835-87286854 | None:intergenic | 35.0% |
| !!! | TGGTTTTAAGGTACGATGAA+AGG | - | chr3.2:87286836-87286855 | None:intergenic | 35.0% |
| AAAGAATGGAGCGTACCAAA+AGG | - | chr3.2:87287237-87287256 | None:intergenic | 40.0% | |
| AAGAATGGAGCGTACCAAAA+GGG | - | chr3.2:87287236-87287255 | None:intergenic | 40.0% | |
| AAGTAACTCTTGACTCTGTG+GGG | - | chr3.2:87288198-87288217 | None:intergenic | 40.0% | |
| ACCAAAAGGTAAAATGGTGG+TGG | + | chr3.2:87287102-87287121 | MS.gene072886:CDS | 40.0% | |
| ACTATGTGTGTATAGGGACA+GGG | + | chr3.2:87287067-87287086 | MS.gene072886:intron | 40.0% | |
| ACTCATCAGAGTCAAACACA+GGG | - | chr3.2:87288129-87288148 | None:intergenic | 40.0% | |
| AGACCGAATCCAATGTTCAA+AGG | + | chr3.2:87287164-87287183 | MS.gene072886:CDS | 40.0% | |
| AGGAAGCTTCCTTTGAACAT+TGG | - | chr3.2:87287176-87287195 | None:intergenic | 40.0% | |
| AGTTTGTATGACTCTAGCGA+TGG | + | chr3.2:87287132-87287151 | MS.gene072886:CDS | 40.0% | |
| ATACCGTGAAAGGAGTTTGA+TGG | - | chr3.2:87288318-87288337 | None:intergenic | 40.0% | |
| CAACAACAACAAGAACAAGG+TGG | + | chr3.2:87289470-87289489 | MS.gene072886:CDS | 40.0% | |
| CAACATAGAAGATGTGGAAG+AGG | - | chr3.2:87289898-87289917 | None:intergenic | 40.0% | |
| CAACATCCATATGAGTCAGA+TGG | + | chr3.2:87288100-87288119 | MS.gene072886:CDS | 40.0% | |
| CAGAATAATGTTGGTCGTGA+AGG | - | chr3.2:87287550-87287569 | None:intergenic | 40.0% | |
| CTTCACGCACCAAAAATAGA+AGG | + | chr3.2:87287335-87287354 | MS.gene072886:intron | 40.0% | |
| GAAAACTCCTTCTCACGTTT+GGG | + | chr3.2:87286900-87286919 | MS.gene072886:CDS | 40.0% | |
| GAAGATGTGGAAGAGGATAA+AGG | - | chr3.2:87289891-87289910 | None:intergenic | 40.0% | |
| GAATAATGTTGGTCGTGAAG+GGG | - | chr3.2:87287548-87287567 | None:intergenic | 40.0% | |
| GTGAAGTGAGCTTGTGAAAT+GGG | - | chr3.2:87287321-87287340 | None:intergenic | 40.0% | |
| TACTATGTGTGTATAGGGAC+AGG | + | chr3.2:87287066-87287085 | MS.gene072886:intron | 40.0% | |
| TCACACAAGGTTCATCTGAA+TGG | + | chr3.2:87289247-87289266 | MS.gene072886:CDS | 40.0% | |
| TTCAGGGACAAAGACAAGTT+TGG | + | chr3.2:87288225-87288244 | MS.gene072886:CDS | 40.0% | |
| TTTGACAACCTCATCACACA+AGG | + | chr3.2:87289234-87289253 | MS.gene072886:CDS | 40.0% | |
| ! | AATCATCGAAGCTACCCTTT+TGG | + | chr3.2:87287219-87287238 | MS.gene072886:CDS | 40.0% |
| ! | ACCACCACCATTTTACCTTT+TGG | - | chr3.2:87287106-87287125 | None:intergenic | 40.0% |
| ! | AGGGGTGTATTTATAAGTGG+AGG | - | chr3.2:87287530-87287549 | None:intergenic | 40.0% |
| ! | CGTTTTTGTGAGGTAGTGTT+AGG | - | chr3.2:87287488-87287507 | None:intergenic | 40.0% |
| ! | GTCTAAGGTTATTGAAGCAC+AGG | + | chr3.2:87287939-87287958 | MS.gene072886:CDS | 40.0% |
| ! | TGGGTGAGAGACTTTTTGAA+GGG | + | chr3.2:87289586-87289605 | MS.gene072886:CDS | 40.0% |
| ! | TTGGGTGAGAGACTTTTTGA+AGG | + | chr3.2:87289585-87289604 | MS.gene072886:CDS | 40.0% |
| !! | AAAGGTAAAATGGTGGTGGT+CGG | + | chr3.2:87287106-87287125 | MS.gene072886:CDS | 40.0% |
| !! | TTCTGAGGCAGAACAACTAA+AGG | - | chr3.2:87289360-87289379 | None:intergenic | 40.0% |
| !!! | GACTTTTTGAAGGGTGTCAA+AGG | + | chr3.2:87289595-87289614 | MS.gene072886:CDS | 40.0% |
| CAATAGAAGGTTCAAGGGGT+GGG | + | chr3.2:87288252-87288271 | MS.gene072886:CDS | 45.0% | |
| CAGATGAACCTTGTGTGATG+AGG | - | chr3.2:87289245-87289264 | None:intergenic | 45.0% | |
| CCATTGACCTTCAACCGTAT+AGG | - | chr3.2:87287196-87287215 | None:intergenic | 45.0% | |
| CCTATACGGTTGAAGGTCAA+TGG | + | chr3.2:87287193-87287212 | MS.gene072886:CDS | 45.0% | |
| CCTCACAAAAACGACTTGTG+AGG | + | chr3.2:87287495-87287514 | MS.gene072886:intron | 45.0% | |
| CGTGAAGTGAGCTTGTGAAA+TGG | - | chr3.2:87287322-87287341 | None:intergenic | 45.0% | |
| CTCATCAGAGTCAAACACAG+GGG | - | chr3.2:87288128-87288147 | None:intergenic | 45.0% | |
| CTGCCTCAGAAATCATACAC+AGG | + | chr3.2:87289369-87289388 | MS.gene072886:CDS | 45.0% | |
| CTTGTCTTTGTCCCTGAACT+TGG | - | chr3.2:87288223-87288242 | None:intergenic | 45.0% | |
| GAAGCTTCCTATACGGTTGA+AGG | + | chr3.2:87287186-87287205 | MS.gene072886:CDS | 45.0% | |
| GACTCATCAGAGTCAAACAC+AGG | - | chr3.2:87288130-87288149 | None:intergenic | 45.0% | |
| GGAAAACTCCTTCTCACGTT+TGG | + | chr3.2:87286899-87286918 | MS.gene072886:CDS | 45.0% | |
| TCAATAGAAGGTTCAAGGGG+TGG | + | chr3.2:87288251-87288270 | MS.gene072886:CDS | 45.0% | |
| TCGAACGAATCCACAACAAG+CGG | + | chr3.2:87288151-87288170 | MS.gene072886:CDS | 45.0% | |
| TGATTGTCCCAAACGTGAGA+AGG | - | chr3.2:87286910-87286929 | None:intergenic | 45.0% | |
| TGCAATTGCCGGTGAAGATA+AGG | - | chr3.2:87289846-87289865 | None:intergenic | 45.0% | |
| TTGTATGACTCTAGCGATGG+AGG | + | chr3.2:87287135-87287154 | MS.gene072886:CDS | 45.0% | |
| ! | AACGTGAGAAGGAGTTTTCC+CGG | - | chr3.2:87286899-87286918 | None:intergenic | 45.0% |
| !! | ATGACTGCAGGGTGGTTTTA+AGG | - | chr3.2:87286848-87286867 | None:intergenic | 45.0% |
| !! | CACTGGCTCCATACAAATCA+AGG | + | chr3.2:87289192-87289211 | MS.gene072886:CDS | 45.0% |
| !!! | CCTCACAAGTCGTTTTTGTG+AGG | - | chr3.2:87287498-87287517 | None:intergenic | 45.0% |
| !! | AAATAGTAATATTATTAAAT+TGG | - | chr3.2:87288904-87288923 | None:intergenic | 5.0% |
| !! | TAATTATTTAATTAATTAAC+GGG | - | chr3.2:87287881-87287900 | None:intergenic | 5.0% |
| AACGAATCCACAACAAGCGG+TGG | + | chr3.2:87288154-87288173 | MS.gene072886:CDS | 50.0% | |
| ATGTGTGTATAGGGACAGGG+TGG | + | chr3.2:87287070-87287089 | MS.gene072886:intron | 50.0% | |
| CAACGAAGTGAAAAGGCCTC+TGG | + | chr3.2:87289132-87289151 | MS.gene072886:CDS | 50.0% | |
| CAGGGAGTGATATGACTGCA+GGG | - | chr3.2:87286859-87286878 | None:intergenic | 50.0% | |
| GACCTCTGTGTCTTCAACCT+TGG | + | chr3.2:87286931-87286950 | MS.gene072886:CDS | 50.0% | |
| GGCAGACATGTTTGAGTCCA+AGG | - | chr3.2:87286951-87286970 | None:intergenic | 50.0% | |
| GTCCAAGGTTGAAGACACAG+AGG | - | chr3.2:87286936-87286955 | None:intergenic | 50.0% | |
| GCAGGGAGTGATATGACTGC+AGG | - | chr3.2:87286860-87286879 | None:intergenic | 55.0% | |
| GGAGTGATATGACTGCAGGG+TGG | - | chr3.2:87286856-87286875 | None:intergenic | 55.0% | |
| GGGGACCCATCTGACTCATA+TGG | - | chr3.2:87288109-87288128 | None:intergenic | 55.0% | |
| GTGTATAGGGACAGGGTGGT+GGG | + | chr3.2:87287074-87287093 | MS.gene072886:intron | 55.0% | |
| TGTATAGGGACAGGGTGGTG+GGG | + | chr3.2:87287075-87287094 | MS.gene072886:intron | 55.0% | |
| TGTGCATGCACTCTCACCAG+AGG | - | chr3.2:87289151-87289170 | None:intergenic | 55.0% | |
| TGTGTATAGGGACAGGGTGG+TGG | + | chr3.2:87287073-87287092 | MS.gene072886:intron | 55.0% | |
| ! | TGAACTGCCACCGCTTGTTG+TGG | - | chr3.2:87288164-87288183 | None:intergenic | 55.0% |
| !! | GGTGGTGGGGAAGAACCAAA+AGG | + | chr3.2:87287088-87287107 | MS.gene072886:CDS | 55.0% |
| GCAGCGACGAATCTACGGCA+GGG | - | chr3.2:87286877-87286896 | None:intergenic | 60.0% | |
| TCCCGGCAGCGACGAATCTA+CGG | - | chr3.2:87286882-87286901 | None:intergenic | 60.0% | |
| TGCCGTAGATTCGTCGCTGC+CGG | + | chr3.2:87286877-87286896 | MS.gene072886:CDS | 60.0% | |
| GCCGTAGATTCGTCGCTGCC+GGG | + | chr3.2:87286878-87286897 | MS.gene072886:CDS | 65.0% | |
| GGCAGCGACGAATCTACGGC+AGG | - | chr3.2:87286878-87286897 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 87286826 | 87289950 | 87286826 | ID=MS.gene072886 |
| chr3.2 | mRNA | 87286826 | 87289950 | 87286826 | ID=MS.gene072886.t1;Parent=MS.gene072886 |
| chr3.2 | exon | 87286826 | 87286993 | 87286826 | ID=MS.gene072886.t1.exon1;Parent=MS.gene072886.t1 |
| chr3.2 | CDS | 87286826 | 87286993 | 87286826 | ID=cds.MS.gene072886.t1;Parent=MS.gene072886.t1 |
| chr3.2 | exon | 87287082 | 87287240 | 87287082 | ID=MS.gene072886.t1.exon2;Parent=MS.gene072886.t1 |
| chr3.2 | CDS | 87287082 | 87287240 | 87287082 | ID=cds.MS.gene072886.t1;Parent=MS.gene072886.t1 |
| chr3.2 | exon | 87287935 | 87288333 | 87287935 | ID=MS.gene072886.t1.exon3;Parent=MS.gene072886.t1 |
| chr3.2 | CDS | 87287935 | 87288333 | 87287935 | ID=cds.MS.gene072886.t1;Parent=MS.gene072886.t1 |
| chr3.2 | exon | 87289006 | 87289950 | 87289006 | ID=MS.gene072886.t1.exon4;Parent=MS.gene072886.t1 |
| chr3.2 | CDS | 87289006 | 87289950 | 87289006 | ID=cds.MS.gene072886.t1;Parent=MS.gene072886.t1 |
| Gene Sequence |
| Protein sequence |
