Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07289.t1 | XP_003591397.1 | 96.9 | 327 | 10 | 0 | 1 | 327 | 1 | 327 | 6.20E-181 | 643.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07289.t1 | G7ICX7 | 96.9 | 327 | 10 | 0 | 1 | 327 | 1 | 327 | 4.5e-181 | 643.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene053144 | MS.gene07289 | 0.817386 | 3.39E-52 | -1.69E-46 |
| MS.gene060519 | MS.gene07289 | 0.805942 | 1.05E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07289.t1 | MTR_1g086990 | 96.942 | 327 | 10 | 0 | 1 | 327 | 1 | 327 | 0.0 | 651 |
| MS.gene07289.t1 | MTR_3g096580 | 92.135 | 89 | 7 | 0 | 239 | 327 | 9 | 97 | 2.41e-51 | 166 |
| MS.gene07289.t1 | MTR_3g096562 | 91.860 | 86 | 7 | 0 | 242 | 327 | 62 | 147 | 8.67e-47 | 162 |
| MS.gene07289.t1 | MTR_7g020840 | 32.616 | 279 | 168 | 10 | 37 | 307 | 35 | 301 | 1.15e-30 | 119 |
| MS.gene07289.t1 | MTR_1g030760 | 32.215 | 298 | 178 | 10 | 15 | 302 | 14 | 297 | 1.83e-28 | 113 |
| MS.gene07289.t1 | MTR_6g021910 | 33.333 | 279 | 162 | 11 | 37 | 302 | 34 | 301 | 4.71e-27 | 110 |
| MS.gene07289.t1 | MTR_3g070770 | 29.893 | 281 | 166 | 11 | 55 | 307 | 6 | 283 | 3.36e-24 | 101 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07289.t1 | AT2G16760 | 64.939 | 328 | 104 | 8 | 6 | 327 | 5 | 327 | 3.86e-142 | 405 |
| MS.gene07289.t1 | AT2G47370 | 60.597 | 335 | 119 | 8 | 1 | 327 | 1 | 330 | 2.64e-134 | 385 |
| MS.gene07289.t1 | AT2G47370 | 59.286 | 280 | 103 | 6 | 1 | 273 | 1 | 276 | 3.40e-108 | 317 |
| MS.gene07289.t1 | AT5G28660 | 46.377 | 207 | 66 | 4 | 67 | 273 | 5 | 166 | 1.09e-45 | 153 |
| MS.gene07289.t1 | AT2G01410 | 30.032 | 313 | 184 | 12 | 4 | 300 | 15 | 308 | 8.04e-25 | 103 |
Find 81 sgRNAs with CRISPR-Local
Find 195 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCTTTCTTACTCAACTTTC+TGG | 0.113429 | 1.4:-69373719 | MS.gene07289:CDS |
| AAAACATTGGTTGGCCTTAA+TGG | 0.152759 | 1.4:-69371342 | MS.gene07289:CDS |
| AAGAGAATGGCGAGGAATTT+TGG | 0.197496 | 1.4:+69374109 | None:intergenic |
| CCAGCAACCACAACCTTATT+AGG | 0.208425 | 1.4:+69371168 | None:intergenic |
| ATTGGAGGGCCACTTTATTT+TGG | 0.228396 | 1.4:-69371213 | MS.gene07289:CDS |
| GTGAAGATAATTAAGGTTAT+TGG | 0.247604 | 1.4:-69371231 | MS.gene07289:CDS |
| CCTAATAAGGTTGTGGTTGC+TGG | 0.247906 | 1.4:-69371168 | MS.gene07289:CDS |
| CATCCCCAACGACGCATTTC+CGG | 0.257835 | 1.4:+69373844 | None:intergenic |
| AGATTAGTGGAGAGTTTAGA+TGG | 0.265703 | 1.4:-69371132 | MS.gene07289:CDS |
| AGAGTTATTGTCTCCTAATA+AGG | 0.268390 | 1.4:-69371181 | MS.gene07289:CDS |
| CCGGAGTAGGAATCGGATTC+TGG | 0.291646 | 1.4:-69373813 | MS.gene07289:CDS |
| GTGGTTGCTGGAAATCCTTC+AGG | 0.294870 | 1.4:-69371156 | MS.gene07289:CDS |
| CAAGTAAAATATGGAAAGTT+GGG | 0.299945 | 1.4:-69371425 | MS.gene07289:CDS |
| CAATTCCAACCATATGGTTT+AGG | 0.317125 | 1.4:+69371022 | None:intergenic |
| ATGTAAAAGCAAGTAAAATA+TGG | 0.332923 | 1.4:-69371434 | MS.gene07289:CDS |
| AGAGGAAGTGAAGATAATTA+AGG | 0.344563 | 1.4:-69371238 | MS.gene07289:CDS |
| CTAAACCATATGGTTGGAAT+TGG | 0.352983 | 1.4:-69371021 | MS.gene07289:CDS |
| TTGGCCGGAAATGCGTCGTT+GGG | 0.356790 | 1.4:-69373848 | MS.gene07289:CDS |
| TCGGTTGTTGCAAAATTCTC+AGG | 0.364403 | 1.4:-69371096 | MS.gene07289:CDS |
| GCAAGTAAAATATGGAAAGT+TGG | 0.367402 | 1.4:-69371426 | MS.gene07289:CDS |
| GGTGGTAAACAATTCCATTA+AGG | 0.371380 | 1.4:+69371328 | None:intergenic |
| CTCAGGGCCTAAACATCGTT+TGG | 0.372687 | 1.4:-69371079 | MS.gene07289:CDS |
| ATATGGAAAGTTGGGGTTGA+TGG | 0.388063 | 1.4:-69371417 | MS.gene07289:CDS |
| GGTATCCAATTCCAACCATA+TGG | 0.404384 | 1.4:+69371016 | None:intergenic |
| ATTACTATTAAGAATCCATC+TGG | 0.406971 | 1.4:+69371306 | None:intergenic |
| TATGGAAAGTTGGGGTTGAT+GGG | 0.450804 | 1.4:-69371416 | MS.gene07289:CDS |
| CGATTGACCGGAGTAGGAAT+CGG | 0.459191 | 1.4:-69373820 | MS.gene07289:CDS |
| TAGTGGAGAGTTTAGATGGA+TGG | 0.469672 | 1.4:-69371128 | MS.gene07289:CDS |
| TCTTCCAATACTGTTCCCTC+TGG | 0.482175 | 1.4:+69373896 | None:intergenic |
| AGATGGATGGAATACAGCTT+CGG | 0.484091 | 1.4:-69371115 | MS.gene07289:CDS |
| ATCACCAGAGGGAACAGTAT+TGG | 0.485188 | 1.4:-69373900 | MS.gene07289:CDS |
| GTTGTAAACGCTGATGTTAG+AGG | 0.486804 | 1.4:-69373791 | MS.gene07289:CDS |
| AAATCCTTCAGGGAGATTAG+TGG | 0.494271 | 1.4:-69371145 | MS.gene07289:CDS |
| GTTGGCCGGAAATGCGTCGT+TGG | 0.505279 | 1.4:-69373849 | MS.gene07289:CDS |
| AATCCATCTCCAAAATAAAG+TGG | 0.505424 | 1.4:+69371204 | None:intergenic |
| CGGTTGTTGCAAAATTCTCA+GGG | 0.508725 | 1.4:-69371095 | MS.gene07289:CDS |
| CACTATTCACTCCAAAAGAA+TGG | 0.508816 | 1.4:-69371368 | MS.gene07289:CDS |
| GATTGATTTAACACAGGGAG+AGG | 0.526887 | 1.4:-69371256 | MS.gene07289:CDS |
| GAAAGTGTACCTAAACCATA+TGG | 0.527065 | 1.4:-69371031 | MS.gene07289:CDS |
| AAGATAATTAAGGTTATTGG+AGG | 0.528555 | 1.4:-69371228 | MS.gene07289:CDS |
| GATGATTATGCCGATGGGTA+TGG | 0.529205 | 1.4:+69374075 | None:intergenic |
| TGGTTGCTGGAAATCCTTCA+GGG | 0.530888 | 1.4:-69371155 | MS.gene07289:CDS |
| CTGAAAGAAACGGAGTTGGC+CGG | 0.532209 | 1.4:-69373863 | MS.gene07289:CDS |
| TTTCAGAGAATGTGCAAAGT+GGG | 0.535552 | 1.4:-69373996 | MS.gene07289:CDS |
| AAGAGAGATGATTATGCCGA+TGG | 0.536931 | 1.4:+69374069 | None:intergenic |
| GGAATTGTTTACCACCCAGA+TGG | 0.538287 | 1.4:-69371321 | MS.gene07289:CDS |
| TAGTGATAGACGTGAGTTGA+GGG | 0.540159 | 1.4:+69374034 | None:intergenic |
| ATTGTCTCCTAATAAGGTTG+TGG | 0.545717 | 1.4:-69371175 | MS.gene07289:CDS |
| CCAGAATCCGATTCCTACTC+CGG | 0.552410 | 1.4:+69373813 | None:intergenic |
| AGTGACTGTTCTGAAAGAAA+CGG | 0.554947 | 1.4:-69373873 | MS.gene07289:CDS |
| CAGAAAGTTGAGTAAGAAAG+AGG | 0.557479 | 1.4:+69373720 | None:intergenic |
| GAATGGCACAAAACATTGGT+TGG | 0.557627 | 1.4:-69371351 | MS.gene07289:CDS |
| AACTGCAACATCGTCTGCAA+AGG | 0.560005 | 1.4:+69371485 | None:intergenic |
| GATGTAGCCAAACGATGTTT+AGG | 0.562054 | 1.4:+69371072 | None:intergenic |
| AAAAGAATGGCACAAAACAT+TGG | 0.562268 | 1.4:-69371355 | MS.gene07289:CDS |
| GGCTGTGAAGAGGAAGAGAA+TGG | 0.566959 | 1.4:+69374096 | None:intergenic |
| CTCTCCACTAATCTCCCTGA+AGG | 0.567971 | 1.4:+69371141 | None:intergenic |
| GTTCAAGATTGATTTAACAC+AGG | 0.568807 | 1.4:-69371262 | MS.gene07289:CDS |
| ACATCAGCTACTGTGAAGGA+TGG | 0.570230 | 1.4:-69371054 | MS.gene07289:CDS |
| CTCTTCACAGCCATACCCAT+CGG | 0.579141 | 1.4:-69374085 | MS.gene07289:CDS |
| TTCAAGATTGATTTAACACA+GGG | 0.581645 | 1.4:-69371261 | MS.gene07289:CDS |
| CATCAGCTACTGTGAAGGAT+GGG | 0.589586 | 1.4:-69371053 | MS.gene07289:CDS |
| CGTTGGGGATGACGATTGAC+CGG | 0.594121 | 1.4:-69373832 | MS.gene07289:CDS |
| GTGTACCTAAACCATATGGT+TGG | 0.595572 | 1.4:-69371027 | MS.gene07289:CDS |
| AATCGGTCAAATTTCCGTAC+CGG | 0.599124 | 1.4:-69373930 | MS.gene07289:CDS |
| AAAGAAGCATGCTATTGTTG+AGG | 0.609816 | 1.4:-69370989 | MS.gene07289:CDS |
| TGTTCTGAAAGAAACGGAGT+TGG | 0.613305 | 1.4:-69373867 | MS.gene07289:CDS |
| GTCTATCACTATCACAGCAA+AGG | 0.614577 | 1.4:-69374022 | MS.gene07289:CDS |
| GGCTACATCAGCTACTGTGA+AGG | 0.617487 | 1.4:-69371058 | MS.gene07289:CDS |
| AAGTAAAATATGGAAAGTTG+GGG | 0.624724 | 1.4:-69371424 | MS.gene07289:CDS |
| AGAGAGATGATTATGCCGAT+GGG | 0.637293 | 1.4:+69374070 | None:intergenic |
| TGGCCGGAAATGCGTCGTTG+GGG | 0.638022 | 1.4:-69373847 | MS.gene07289:CDS |
| GGATGACGATTGACCGGAGT+AGG | 0.649044 | 1.4:-69373826 | MS.gene07289:CDS |
| TTACTATTAAGAATCCATCT+GGG | 0.651021 | 1.4:+69371307 | None:intergenic |
| GATGTTGCAGTTGATGCAGA+AGG | 0.659638 | 1.4:-69371474 | MS.gene07289:CDS |
| CGATGGGTATGGCTGTGAAG+AGG | 0.679741 | 1.4:+69374086 | None:intergenic |
| AGATAATTAAGGTTATTGGA+GGG | 0.679870 | 1.4:-69371227 | MS.gene07289:CDS |
| TGAAGAGGAAGAGAATGGCG+AGG | 0.681971 | 1.4:+69374101 | None:intergenic |
| ATAGTGATAGACGTGAGTTG+AGG | 0.689700 | 1.4:+69374033 | None:intergenic |
| CTATTAAGAATCCATCTGGG+TGG | 0.712337 | 1.4:+69371310 | None:intergenic |
| TTGCTTATGATCTTTCTACG+TGG | 0.722273 | 1.4:-69373748 | MS.gene07289:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CAATATTAATTTCTAATTTA+TGG | - | chr1.4:69373466-69373485 | MS.gene07289:intron | 10.0% |
| !! | TTAATAATTCAATATAAGAT+GGG | - | chr1.4:69372697-69372716 | MS.gene07289:intron | 10.0% |
| !! | TTTAATAATTCAATATAAGA+TGG | - | chr1.4:69372696-69372715 | MS.gene07289:intron | 10.0% |
| !!! | AAATTATAAGTCTTTTTTTT+GGG | + | chr1.4:69371874-69371893 | None:intergenic | 10.0% |
| !!! | ATCAAGTTTTTTATATAAAT+TGG | + | chr1.4:69371566-69371585 | None:intergenic | 10.0% |
| !!! | TAAATTATAAGTCTTTTTTT+TGG | + | chr1.4:69371875-69371894 | None:intergenic | 10.0% |
| !!! | TCAAGTTTTTTATATAAATT+GGG | + | chr1.4:69371565-69371584 | None:intergenic | 10.0% |
| !!! | TCATTTACTTTTTTTTTTTT+TGG | + | chr1.4:69372421-69372440 | None:intergenic | 10.0% |
| !!! | TTTGAATTAGTTATTTATTT+TGG | + | chr1.4:69371963-69371982 | None:intergenic | 10.0% |
| !!! | TTTTCATATATATAAAACAA+CGG | + | chr1.4:69373112-69373131 | None:intergenic | 10.0% |
| !! | AAGTTGTTTATAAATATGAT+CGG | + | chr1.4:69373195-69373214 | None:intergenic | 15.0% |
| !! | ATATAAAAAACTTGATGTAA+AGG | - | chr1.4:69371570-69371589 | MS.gene07289:intron | 15.0% |
| !! | TAAATAATTGAGTCAAAAAT+TGG | + | chr1.4:69373570-69373589 | None:intergenic | 15.0% |
| !! | TAGTAAATAAAGTCTAAATA+AGG | + | chr1.4:69373087-69373106 | None:intergenic | 15.0% |
| !! | TTGACTCAATTATTTAATAT+TGG | - | chr1.4:69373574-69373593 | MS.gene07289:intron | 15.0% |
| !!! | AAAGACTTATAATTTAAGAT+AGG | - | chr1.4:69371879-69371898 | MS.gene07289:intron | 15.0% |
| !!! | AAGACTTATAATTTAAGATA+GGG | - | chr1.4:69371880-69371899 | MS.gene07289:intron | 15.0% |
| !!! | CTTTATTTAATGAATCTAAA+AGG | - | chr1.4:69373277-69373296 | MS.gene07289:intron | 15.0% |
| !!! | CTTTTAGATTCATTAAATAA+AGG | + | chr1.4:69373279-69373298 | None:intergenic | 15.0% |
| !!! | CTTTTAGATTCATTAAATAA+CGG | + | chr1.4:69373279-69373298 | None:intergenic | 15.0% |
| !!! | TTTGTAGATCTTTTTTTTTT+TGG | - | chr1.4:69372200-69372219 | MS.gene07289:intron | 15.0% |
| !! | AATGAAATGAAAATAAGAGA+GGG | + | chr1.4:69371678-69371697 | None:intergenic | 20.0% |
| !! | ATGTAAAAGCAAGTAAAATA+TGG | - | chr1.4:69373677-69373696 | MS.gene07289:intron | 20.0% |
| !! | CCTAAAAACATGAATATATT+CGG | + | chr1.4:69371514-69371533 | None:intergenic | 20.0% |
| !! | CGTTATTTAATGAATCTAAA+AGG | - | chr1.4:69373325-69373344 | MS.gene07289:intron | 20.0% |
| !! | TAATGAAATGAAAATAAGAG+AGG | + | chr1.4:69371679-69371698 | None:intergenic | 20.0% |
| !! | TAATTTATGGTGATATTGTT+GGG | - | chr1.4:69373479-69373498 | MS.gene07289:intron | 20.0% |
| !! | TAGTAAAATGTGAAAACAAT+TGG | - | chr1.4:69373006-69373025 | MS.gene07289:intron | 20.0% |
| !! | TTGGAACAGTTAAAAAAATA+TGG | - | chr1.4:69373025-69373044 | MS.gene07289:intron | 20.0% |
| !! | TTTAATATTGTACATGCATA+TGG | - | chr1.4:69372579-69372598 | MS.gene07289:intron | 20.0% |
| !!! | ATATGTTTAGAATTGTCAAA+TGG | - | chr1.4:69371769-69371788 | MS.gene07289:intron | 20.0% |
| !!! | CGAATATATTCATGTTTTTA+GGG | - | chr1.4:69371512-69371531 | MS.gene07289:intron | 20.0% |
| !!! | GTTTTTTATATAAATTGGGA+CGG | + | chr1.4:69371561-69371580 | None:intergenic | 20.0% |
| ! | AAGATAATTAAGGTTATTGG+AGG | - | chr1.4:69373883-69373902 | MS.gene07289:CDS | 25.0% |
| ! | AAGTAAAATATGGAAAGTTG+GGG | - | chr1.4:69373687-69373706 | MS.gene07289:intron | 25.0% |
| ! | AGATAATTAAGGTTATTGGA+GGG | - | chr1.4:69373884-69373903 | MS.gene07289:CDS | 25.0% |
| ! | ATAAGATGACATTGAATGAT+TGG | + | chr1.4:69371631-69371650 | None:intergenic | 25.0% |
| ! | ATATCGGTGAAATTAAATTC+AGG | - | chr1.4:69372028-69372047 | MS.gene07289:intron | 25.0% |
| ! | ATTACTATTAAGAATCCATC+TGG | + | chr1.4:69373808-69373827 | None:intergenic | 25.0% |
| ! | CAAGTAAAATATGGAAAGTT+GGG | - | chr1.4:69373686-69373705 | MS.gene07289:intron | 25.0% |
| ! | CGAAAAAAGAGTTTATGAAA+CGG | + | chr1.4:69371154-69371173 | None:intergenic | 25.0% |
| ! | CTAATTTATGGTGATATTGT+TGG | - | chr1.4:69373478-69373497 | MS.gene07289:intron | 25.0% |
| ! | GAAGAACAAAAATACTTACT+AGG | + | chr1.4:69371419-69371438 | None:intergenic | 25.0% |
| ! | GACAATGCATAATATATGTA+AGG | - | chr1.4:69371836-69371855 | MS.gene07289:intron | 25.0% |
| ! | GTGAAGATAATTAAGGTTAT+TGG | - | chr1.4:69373880-69373899 | MS.gene07289:CDS | 25.0% |
| ! | GTTGACCAAACTTTATATAT+AGG | - | chr1.4:69373389-69373408 | MS.gene07289:intron | 25.0% |
| ! | TCCAACAGATAAAAAATACT+TGG | + | chr1.4:69372447-69372466 | None:intergenic | 25.0% |
| ! | TGCATAATATATGTAAGGTT+TGG | - | chr1.4:69371841-69371860 | MS.gene07289:intron | 25.0% |
| ! | TTACTATTAAGAATCCATCT+GGG | + | chr1.4:69373807-69373826 | None:intergenic | 25.0% |
| ! | TTGTGTTGTATTGTATATCT+TGG | + | chr1.4:69372484-69372503 | None:intergenic | 25.0% |
| ! | TTGTTTATAAATATGATCGG+AGG | + | chr1.4:69373192-69373211 | None:intergenic | 25.0% |
| !! | AGGAGTTTAACATCTTTTAT+CGG | + | chr1.4:69372351-69372370 | None:intergenic | 25.0% |
| !! | ATAGTAATTCACACTTTTAG+TGG | - | chr1.4:69373820-69373839 | MS.gene07289:CDS | 25.0% |
| !! | CCGAATATATTCATGTTTTT+AGG | - | chr1.4:69371511-69371530 | MS.gene07289:intron | 25.0% |
| !! | TAAGGTTGATTGTCAAAATT+TGG | + | chr1.4:69372902-69372921 | None:intergenic | 25.0% |
| !! | TTCAAGATTGATTTAACACA+GGG | - | chr1.4:69373850-69373869 | MS.gene07289:CDS | 25.0% |
| !!! | ACCAAGTATTTTTTATCTGT+TGG | - | chr1.4:69372443-69372462 | MS.gene07289:intron | 25.0% |
| !!! | TTCATAAACTCTTTTTTCGA+AGG | - | chr1.4:69371155-69371174 | MS.gene07289:CDS | 25.0% |
| AAAAAGAGTTTATGAAACGG+TGG | + | chr1.4:69371151-69371170 | None:intergenic | 30.0% | |
| AAAAGAATGGCACAAAACAT+TGG | - | chr1.4:69373756-69373775 | MS.gene07289:CDS | 30.0% | |
| AAATACGTGTCGTGATATAT+CGG | - | chr1.4:69372012-69372031 | MS.gene07289:intron | 30.0% | |
| AACTTTATATATAGGACCAG+AGG | - | chr1.4:69373397-69373416 | MS.gene07289:intron | 30.0% | |
| AATCCATCTCCAAAATAAAG+TGG | + | chr1.4:69373910-69373929 | None:intergenic | 30.0% | |
| AGAGGAAGTGAAGATAATTA+AGG | - | chr1.4:69373873-69373892 | MS.gene07289:CDS | 30.0% | |
| AGAGTTATTGTCTCCTAATA+AGG | - | chr1.4:69373930-69373949 | MS.gene07289:CDS | 30.0% | |
| ATGTGAAAACTGAGCAATTA+AGG | + | chr1.4:69372920-69372939 | None:intergenic | 30.0% | |
| CATTCATCTGTATTCAAACT+TGG | - | chr1.4:69372089-69372108 | MS.gene07289:intron | 30.0% | |
| CTGGTCCTATATATAAAGTT+TGG | + | chr1.4:69373397-69373416 | None:intergenic | 30.0% | |
| GCAAGTAAAATATGGAAAGT+TGG | - | chr1.4:69373685-69373704 | MS.gene07289:intron | 30.0% | |
| TATCAACTGAGCTAAGTTTA+CGG | + | chr1.4:69371808-69371827 | None:intergenic | 30.0% | |
| TGCTTATAAATGTGATCAGA+GGG | - | chr1.4:69373354-69373373 | MS.gene07289:intron | 30.0% | |
| TGTAAAACAATAATCACCTC+AGG | + | chr1.4:69372138-69372157 | None:intergenic | 30.0% | |
| TTGCTTATAAATGTGATCAG+AGG | - | chr1.4:69373353-69373372 | MS.gene07289:intron | 30.0% | |
| ! | AATTGTCTTTTCCACTACAA+TGG | + | chr1.4:69372975-69372994 | None:intergenic | 30.0% |
| ! | ACAATAGCATGCTTCTTTTT+AGG | + | chr1.4:69374120-69374139 | None:intergenic | 30.0% |
| ! | CAATAGCATGCTTCTTTTTA+GGG | + | chr1.4:69374119-69374138 | None:intergenic | 30.0% |
| ! | GTTAACTCTTGTTATGTTGT+AGG | + | chr1.4:69372376-69372395 | None:intergenic | 30.0% |
| ! | GTTCAAGATTGATTTAACAC+AGG | - | chr1.4:69373849-69373868 | MS.gene07289:CDS | 30.0% |
| ! | TATGGTTGCTTTGTTATGTT+TGG | - | chr1.4:69372597-69372616 | MS.gene07289:intron | 30.0% |
| !! | AATGTTTTGTGCCATTCTTT+TGG | + | chr1.4:69373757-69373776 | None:intergenic | 30.0% |
| !! | GAGGTGATTATTGTTTTACA+TGG | - | chr1.4:69372138-69372157 | MS.gene07289:intron | 30.0% |
| !!! | ATAAACTCTTTTTTCGAAGG+TGG | - | chr1.4:69371158-69371177 | MS.gene07289:CDS | 30.0% |
| !!! | ATTCTTTTGGAGTGAATAGT+GGG | + | chr1.4:69373744-69373763 | None:intergenic | 30.0% |
| !!! | GTTCTCTTTGTTTTTATCGA+TGG | - | chr1.4:69372800-69372819 | MS.gene07289:intron | 30.0% |
| AAAGAGAACAATAAACGTGC+AGG | + | chr1.4:69372789-69372808 | None:intergenic | 35.0% | |
| AGATTAGTGGAGAGTTTAGA+TGG | - | chr1.4:69373979-69373998 | MS.gene07289:CDS | 35.0% | |
| ATCAACTGAGCTAAGTTTAC+GGG | + | chr1.4:69371807-69371826 | None:intergenic | 35.0% | |
| ATTGTCTCCTAATAAGGTTG+TGG | - | chr1.4:69373936-69373955 | MS.gene07289:CDS | 35.0% | |
| CAACTCAACATCTAGATATG+AGG | + | chr1.4:69372875-69372894 | None:intergenic | 35.0% | |
| CAATTCCAACCATATGGTTT+AGG | + | chr1.4:69374092-69374111 | None:intergenic | 35.0% | |
| CACTATTCACTCCAAAAGAA+TGG | - | chr1.4:69373743-69373762 | MS.gene07289:CDS | 35.0% | |
| CAGAAAGTTGAGTAAGAAAG+AGG | + | chr1.4:69371394-69371413 | None:intergenic | 35.0% | |
| CTAAACCATATGGTTGGAAT+TGG | - | chr1.4:69374090-69374109 | MS.gene07289:CDS | 35.0% | |
| CTATATTGAAATGTGCTAGC+TGG | - | chr1.4:69373518-69373537 | MS.gene07289:intron | 35.0% | |
| CTCTTTCTTACTCAACTTTC+TGG | - | chr1.4:69371392-69371411 | MS.gene07289:CDS | 35.0% | |
| GATGTAAAGGAGAGTTTAGT+TGG | - | chr1.4:69371583-69371602 | MS.gene07289:intron | 35.0% | |
| GCATGGTGTGCATATTATAT+GGG | + | chr1.4:69372762-69372781 | None:intergenic | 35.0% | |
| GGTGGTAAACAATTCCATTA+AGG | + | chr1.4:69373786-69373805 | None:intergenic | 35.0% | |
| TGAAAACGTGAAGACTAACA+TGG | - | chr1.4:69372305-69372324 | MS.gene07289:intron | 35.0% | |
| TGCATGGTGTGCATATTATA+TGG | + | chr1.4:69372763-69372782 | None:intergenic | 35.0% | |
| TTGCTTATGATCTTTCTACG+TGG | - | chr1.4:69371363-69371382 | MS.gene07289:CDS | 35.0% | |
| TTTCAGAGAATGTGCAAAGT+GGG | - | chr1.4:69371115-69371134 | MS.gene07289:CDS | 35.0% | |
| ! | AAAGAAGCATGCTATTGTTG+AGG | - | chr1.4:69374122-69374141 | MS.gene07289:CDS | 35.0% |
| ! | AAGGAGAGTTTAGTTGGTAT+TGG | - | chr1.4:69371589-69371608 | MS.gene07289:intron | 35.0% |
| ! | CTCTAGAAGGTTAAAGACAA+AGG | - | chr1.4:69373438-69373457 | MS.gene07289:intron | 35.0% |
| ! | CTCTTGTTATGTTGTAGGAT+AGG | + | chr1.4:69372371-69372390 | None:intergenic | 35.0% |
| ! | GAAAGTGTACCTAAACCATA+TGG | - | chr1.4:69374080-69374099 | MS.gene07289:CDS | 35.0% |
| ! | TTATGTTTGGAGCGTAGTAA+AGG | - | chr1.4:69372610-69372629 | MS.gene07289:intron | 35.0% |
| ! | TTTTCAGAGAATGTGCAAAG+TGG | - | chr1.4:69371114-69371133 | MS.gene07289:CDS | 35.0% |
| !! | AAAACATTGGTTGGCCTTAA+TGG | - | chr1.4:69373769-69373788 | MS.gene07289:CDS | 35.0% |
| !! | AATGTTAACTTGTGCGCTTA+AGG | - | chr1.4:69372721-69372740 | MS.gene07289:intron | 35.0% |
| !! | AGTGACTGTTCTGAAAGAAA+CGG | - | chr1.4:69371238-69371257 | MS.gene07289:CDS | 35.0% |
| !!! | CATTCTTTTGGAGTGAATAG+TGG | + | chr1.4:69373745-69373764 | None:intergenic | 35.0% |
| !!! | TCTTTTTTCGAAGGTGGAAT+CGG | - | chr1.4:69371164-69371183 | MS.gene07289:CDS | 35.0% |
| AAATCCTTCAGGGAGATTAG+TGG | - | chr1.4:69373966-69373985 | MS.gene07289:CDS | 40.0% | |
| AAGAGAGATGATTATGCCGA+TGG | + | chr1.4:69371045-69371064 | None:intergenic | 40.0% | |
| AAGTGTGTGTAAGTTTCCTG+AGG | - | chr1.4:69372119-69372138 | MS.gene07289:intron | 40.0% | |
| AATCGGTCAAATTTCCGTAC+CGG | - | chr1.4:69371181-69371200 | MS.gene07289:CDS | 40.0% | |
| AGAGAGATGATTATGCCGAT+GGG | + | chr1.4:69371044-69371063 | None:intergenic | 40.0% | |
| AGATGGATGGAATACAGCTT+CGG | - | chr1.4:69373996-69374015 | MS.gene07289:CDS | 40.0% | |
| ATAGTGATAGACGTGAGTTG+AGG | + | chr1.4:69371081-69371100 | None:intergenic | 40.0% | |
| ATATGGAAAGTTGGGGTTGA+TGG | - | chr1.4:69373694-69373713 | MS.gene07289:intron | 40.0% | |
| ATTAAGTAGCCAGTATCCCA+TGG | + | chr1.4:69372539-69372558 | None:intergenic | 40.0% | |
| CAGAGCTTTCATGAATCGAA+AGG | + | chr1.4:69372835-69372854 | None:intergenic | 40.0% | |
| CGGTTGTTGCAAAATTCTCA+GGG | - | chr1.4:69374016-69374035 | MS.gene07289:CDS | 40.0% | |
| CTATTAAGAATCCATCTGGG+TGG | + | chr1.4:69373804-69373823 | None:intergenic | 40.0% | |
| GAATGGCACAAAACATTGGT+TGG | - | chr1.4:69373760-69373779 | MS.gene07289:CDS | 40.0% | |
| GATGTAGCCAAACGATGTTT+AGG | + | chr1.4:69374042-69374061 | None:intergenic | 40.0% | |
| GGTATCCAATTCCAACCATA+TGG | + | chr1.4:69374098-69374117 | None:intergenic | 40.0% | |
| GTCTATCACTATCACAGCAA+AGG | - | chr1.4:69371089-69371108 | MS.gene07289:CDS | 40.0% | |
| GTGTACCTAAACCATATGGT+TGG | - | chr1.4:69374084-69374103 | MS.gene07289:CDS | 40.0% | |
| GTTGTAAACGCTGATGTTAG+AGG | - | chr1.4:69371320-69371339 | MS.gene07289:CDS | 40.0% | |
| TAGTGGAGAGTTTAGATGGA+TGG | - | chr1.4:69373983-69374002 | MS.gene07289:CDS | 40.0% | |
| TCGATTCATGAAAGCTCTGT+AGG | - | chr1.4:69372836-69372855 | MS.gene07289:intron | 40.0% | |
| TCGGTTGTTGCAAAATTCTC+AGG | - | chr1.4:69374015-69374034 | MS.gene07289:CDS | 40.0% | |
| TCTCATCACCTGCATTGAAT+GGG | + | chr1.4:69373603-69373622 | None:intergenic | 40.0% | |
| TTCTCATCACCTGCATTGAA+TGG | + | chr1.4:69373604-69373623 | None:intergenic | 40.0% | |
| ! | AAGAGAATGGCGAGGAATTT+TGG | + | chr1.4:69371005-69371024 | None:intergenic | 40.0% |
| ! | CCTATTGGTTGAACTCTAGA+AGG | - | chr1.4:69373425-69373444 | MS.gene07289:intron | 40.0% |
| ! | GATTGATTTAACACAGGGAG+AGG | - | chr1.4:69373855-69373874 | MS.gene07289:CDS | 40.0% |
| ! | TAGTGATAGACGTGAGTTGA+GGG | + | chr1.4:69371080-69371099 | None:intergenic | 40.0% |
| ! | TATGGAAAGTTGGGGTTGAT+GGG | - | chr1.4:69373695-69373714 | MS.gene07289:intron | 40.0% |
| ! | TGGTGATTCTTTTTCCGGTA+CGG | + | chr1.4:69371198-69371217 | None:intergenic | 40.0% |
| !! | ATTGGAGGGCCACTTTATTT+TGG | - | chr1.4:69373898-69373917 | MS.gene07289:CDS | 40.0% |
| !! | CCTTCTAGAGTTCAACCAAT+AGG | + | chr1.4:69373428-69373447 | None:intergenic | 40.0% |
| !! | TGTTCTGAAAGAAACGGAGT+TGG | - | chr1.4:69371244-69371263 | MS.gene07289:CDS | 40.0% |
| AACTGCAACATCGTCTGCAA+AGG | + | chr1.4:69373629-69373648 | None:intergenic | 45.0% | |
| AAGGCCAGCGATATGAAGAA+CGG | - | chr1.4:69372629-69372648 | MS.gene07289:intron | 45.0% | |
| ACATCAGCTACTGTGAAGGA+TGG | - | chr1.4:69374057-69374076 | MS.gene07289:CDS | 45.0% | |
| ACCGGAAAAAGAATCACCAG+AGG | - | chr1.4:69371199-69371218 | MS.gene07289:CDS | 45.0% | |
| ATAAACGTGCAGGTCATGCA+TGG | + | chr1.4:69372779-69372798 | None:intergenic | 45.0% | |
| ATCACCAGAGGGAACAGTAT+TGG | - | chr1.4:69371211-69371230 | MS.gene07289:CDS | 45.0% | |
| CAACCAATAGGTAGTACCTC+TGG | + | chr1.4:69373416-69373435 | None:intergenic | 45.0% | |
| CATCAGCTACTGTGAAGGAT+GGG | - | chr1.4:69374058-69374077 | MS.gene07289:CDS | 45.0% | |
| CCAGCAACCACAACCTTATT+AGG | + | chr1.4:69373946-69373965 | None:intergenic | 45.0% | |
| CCGGAAAAAGAATCACCAGA+GGG | - | chr1.4:69371200-69371219 | MS.gene07289:CDS | 45.0% | |
| CCTAATAAGGTTGTGGTTGC+TGG | - | chr1.4:69373943-69373962 | MS.gene07289:CDS | 45.0% | |
| CGTTTCAAGCACCATTGTAG+TGG | - | chr1.4:69372961-69372980 | MS.gene07289:intron | 45.0% | |
| CTAACATGGACCAAGCTACA+TGG | - | chr1.4:69372319-69372338 | MS.gene07289:intron | 45.0% | |
| CTCATCACCTGCATTGAATG+GGG | + | chr1.4:69373602-69373621 | None:intergenic | 45.0% | |
| GATGATTATGCCGATGGGTA+TGG | + | chr1.4:69371039-69371058 | None:intergenic | 45.0% | |
| GGAATTGTTTACCACCCAGA+TGG | - | chr1.4:69373790-69373809 | MS.gene07289:CDS | 45.0% | |
| TATCCCATGGTGCAAGTGAT+TGG | + | chr1.4:69372526-69372545 | None:intergenic | 45.0% | |
| TCTTCCAATACTGTTCCCTC+TGG | + | chr1.4:69371218-69371237 | None:intergenic | 45.0% | |
| TGGTTGCTGGAAATCCTTCA+GGG | - | chr1.4:69373956-69373975 | MS.gene07289:CDS | 45.0% | |
| ! | ATTGGTTCCCCATTCAATGC+AGG | - | chr1.4:69373592-69373611 | MS.gene07289:intron | 45.0% |
| ! | CCCTCTGGTGATTCTTTTTC+CGG | + | chr1.4:69371203-69371222 | None:intergenic | 45.0% |
| ! | GATGTTGCAGTTGATGCAGA+AGG | - | chr1.4:69373637-69373656 | MS.gene07289:intron | 45.0% |
| !! | ATGAAGAACGGCATCGACAA+AGG | - | chr1.4:69372641-69372660 | MS.gene07289:intron | 45.0% |
| !!! | GGGCCACTTTATTTTGGAGA+TGG | - | chr1.4:69373904-69373923 | MS.gene07289:CDS | 45.0% |
| !!! | TATATTAATAATTTTATGTT+AGG | - | chr1.4:69371907-69371926 | MS.gene07289:intron | 5.0% |
| CCAGAATCCGATTCCTACTC+CGG | + | chr1.4:69371301-69371320 | None:intergenic | 50.0% | |
| CGATTGACCGGAGTAGGAAT+CGG | - | chr1.4:69371291-69371310 | MS.gene07289:CDS | 50.0% | |
| CTCAGGGCCTAAACATCGTT+TGG | - | chr1.4:69374032-69374051 | MS.gene07289:CDS | 50.0% | |
| CTCTCCACTAATCTCCCTGA+AGG | + | chr1.4:69373973-69373992 | None:intergenic | 50.0% | |
| CTCTTCACAGCCATACCCAT+CGG | - | chr1.4:69371026-69371045 | MS.gene07289:CDS | 50.0% | |
| CTGAAAGAAACGGAGTTGGC+CGG | - | chr1.4:69371248-69371267 | MS.gene07289:CDS | 50.0% | |
| GATGCCGTTCTTCATATCGC+TGG | + | chr1.4:69372636-69372655 | None:intergenic | 50.0% | |
| GCACCAATCACTTGCACCAT+GGG | - | chr1.4:69372520-69372539 | MS.gene07289:intron | 50.0% | |
| GGCTACATCAGCTACTGTGA+AGG | - | chr1.4:69374053-69374072 | MS.gene07289:CDS | 50.0% | |
| GGCTGTGAAGAGGAAGAGAA+TGG | + | chr1.4:69371018-69371037 | None:intergenic | 50.0% | |
| GTGGTTGCTGGAAATCCTTC+AGG | - | chr1.4:69373955-69373974 | MS.gene07289:CDS | 50.0% | |
| TCACTTGCACCATGGGATAC+TGG | - | chr1.4:69372527-69372546 | MS.gene07289:intron | 50.0% | |
| TCGGACTCAACCATGTAGCT+TGG | + | chr1.4:69372332-69372351 | None:intergenic | 50.0% | |
| TGAAGAGGAAGAGAATGGCG+AGG | + | chr1.4:69371013-69371032 | None:intergenic | 50.0% | |
| TGCACCAATCACTTGCACCA+TGG | - | chr1.4:69372519-69372538 | MS.gene07289:intron | 50.0% | |
| !! | GGACCAGAGGTACTACCTAT+TGG | - | chr1.4:69373410-69373429 | MS.gene07289:intron | 50.0% |
| CATCCCCAACGACGCATTTC+CGG | + | chr1.4:69371270-69371289 | None:intergenic | 55.0% | |
| CCGGAGTAGGAATCGGATTC+TGG | - | chr1.4:69371298-69371317 | MS.gene07289:CDS | 55.0% | |
| CGATGGGTATGGCTGTGAAG+AGG | + | chr1.4:69371028-69371047 | None:intergenic | 55.0% | |
| CGTTGGGGATGACGATTGAC+CGG | - | chr1.4:69371279-69371298 | MS.gene07289:CDS | 55.0% | |
| GGATGACGATTGACCGGAGT+AGG | - | chr1.4:69371285-69371304 | MS.gene07289:CDS | 55.0% | |
| TTGGCCGGAAATGCGTCGTT+GGG | - | chr1.4:69371263-69371282 | MS.gene07289:CDS | 55.0% | |
| GTTGGCCGGAAATGCGTCGT+TGG | - | chr1.4:69371262-69371281 | MS.gene07289:CDS | 60.0% | |
| TGGCCGGAAATGCGTCGTTG+GGG | - | chr1.4:69371264-69371283 | MS.gene07289:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 69370978 | 69374155 | 69370978 | ID=MS.gene07289 |
| chr1.4 | mRNA | 69370978 | 69374155 | 69370978 | ID=MS.gene07289.t1;Parent=MS.gene07289 |
| chr1.4 | exon | 69373714 | 69374155 | 69373714 | ID=MS.gene07289.t1.exon1;Parent=MS.gene07289.t1 |
| chr1.4 | CDS | 69373714 | 69374155 | 69373714 | ID=cds.MS.gene07289.t1;Parent=MS.gene07289.t1 |
| chr1.4 | exon | 69370978 | 69371519 | 69370978 | ID=MS.gene07289.t1.exon2;Parent=MS.gene07289.t1 |
| chr1.4 | CDS | 69370978 | 69371519 | 69370978 | ID=cds.MS.gene07289.t1;Parent=MS.gene07289.t1 |
| Gene Sequence |
| Protein sequence |
