AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene060519


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene060519.t1 MTR_8g027220 99.569 232 1 0 1 232 1 232 3.46e-171 470
MS.gene060519.t1 MTR_7g117910 70.561 214 45 2 21 232 15 212 5.28e-104 300
MS.gene060519.t1 MTR_8g089985 66.986 209 64 2 18 222 9 216 2.47e-97 283
MS.gene060519.t1 MTR_3g086980 64.977 217 68 2 18 230 8 220 2.30e-96 281
MS.gene060519.t1 MTR_1g052475 66.832 202 60 2 18 213 7 207 8.35e-94 274
MS.gene060519.t1 MTR_0262s0050 66.500 200 63 1 18 213 7 206 1.25e-91 269
MS.gene060519.t1 MTR_2g014990 58.333 216 88 1 17 232 4 217 6.14e-88 259
MS.gene060519.t1 MTR_4g088090 57.407 216 90 1 17 232 4 217 2.81e-87 257
MS.gene060519.t1 MTR_2g005510 61.692 201 75 1 20 218 9 209 4.00e-86 254
MS.gene060519.t1 MTR_4g079350 56.019 216 93 1 17 232 4 217 1.83e-85 253
MS.gene060519.t1 MTR_4g064897 61.458 192 74 0 17 208 3 194 3.44e-85 252
MS.gene060519.t1 MTR_2g075950 56.422 218 87 3 17 231 4 216 7.66e-84 249
MS.gene060519.t1 MTR_3g069510 56.164 219 86 2 17 231 3 215 9.63e-84 248
MS.gene060519.t1 MTR_2g083860 55.349 215 95 1 17 231 4 217 2.47e-82 245
MS.gene060519.t1 MTR_2g090865 55.140 214 93 1 19 232 4 214 3.87e-81 242
MS.gene060519.t1 MTR_8g036220 54.378 217 92 2 20 230 10 225 2.43e-79 238
MS.gene060519.t1 MTR_1g078200 59.239 184 74 1 20 202 7 190 4.34e-76 229
MS.gene060519.t1 MTR_7g405790 51.456 206 99 1 25 230 14 218 3.22e-72 219
MS.gene060519.t1 MTR_6g079550 49.309 217 100 2 19 231 5 215 2.29e-70 214
MS.gene060519.t1 MTR_7g051940 51.456 206 96 2 25 230 12 213 6.40e-70 213
MS.gene060519.t1 MTR_8g107070 54.444 180 82 0 19 198 7 186 4.75e-64 200
MS.gene060519.t1 MTR_8g031870 52.147 163 78 0 25 187 5 167 1.06e-58 184
MS.gene060519.t1 MTR_2g027660 53.797 158 73 0 25 182 5 162 2.70e-57 181
MS.gene060519.t1 MTR_8g031660 51.534 163 79 0 25 187 5 167 3.81e-56 178
MS.gene060519.t1 MTR_6g021790 51.220 164 80 0 24 187 4 167 4.46e-56 178
MS.gene060519.t1 MTR_2g005500 46.032 189 101 1 24 211 7 195 1.22e-54 174
MS.gene060519.t1 MTR_8g031680 49.080 163 83 0 25 187 5 167 6.12e-54 172
MS.gene060519.t1 MTR_8g006970 49.112 169 86 0 19 187 1 169 2.54e-53 170
MS.gene060519.t1 MTR_7g081700 42.424 198 114 0 19 216 1 198 2.72e-53 171
MS.gene060519.t1 MTR_8g006970 44.330 194 107 1 24 216 20 213 3.61e-53 171
MS.gene060519.t1 MTR_8g031830 47.904 167 86 1 25 190 5 171 3.06e-52 167
MS.gene060519.t1 MTR_1g068740 46.667 165 87 1 24 187 13 177 8.73e-51 164
MS.gene060519.t1 MTR_7g100020 46.667 165 87 1 24 187 13 177 1.52e-50 164
MS.gene060519.t1 MTR_1g115325 46.667 165 87 1 24 187 13 177 1.85e-50 164
MS.gene060519.t1 MTR_1g068730 46.061 165 88 1 24 187 13 177 2.97e-50 163
MS.gene060519.t1 MTR_8g093740 44.706 170 91 3 20 187 7 175 8.45e-46 152
MS.gene060519.t1 MTR_3g064390 41.899 179 99 1 28 206 12 185 9.66e-46 151
MS.gene060519.t1 MTR_2g096550 42.353 170 96 2 20 187 9 178 1.11e-45 151
MS.gene060519.t1 MTR_5g076590 41.899 179 99 1 28 206 12 185 1.52e-45 150
MS.gene060519.t1 MTR_1g029450 46.429 168 87 3 22 187 13 179 1.54e-45 151
MS.gene060519.t1 MTR_4g063160 44.910 167 89 2 24 187 13 179 1.79e-45 151
MS.gene060519.t1 MTR_4g099470 43.750 160 90 0 57 216 15 174 6.14e-45 148
MS.gene060519.t1 MTR_3g096350 43.429 175 96 3 15 187 1 174 9.86e-44 146
MS.gene060519.t1 MTR_1g094220 44.118 170 90 2 28 196 33 198 1.18e-43 145
MS.gene060519.t1 MTR_1g094220 44.643 168 88 2 28 194 33 196 6.25e-43 144
MS.gene060519.t1 MTR_1g094220 46.753 154 81 1 28 180 33 186 1.26e-42 143
MS.gene060519.t1 MTR_3g087160 42.038 157 91 0 27 183 10 166 1.46e-42 143
MS.gene060519.t1 MTR_1g094220 46.753 154 81 1 28 180 33 186 3.29e-42 143
MS.gene060519.t1 MTR_1g068740 48.462 130 66 1 24 152 13 142 6.47e-42 141
MS.gene060519.t1 MTR_5g013900 34.951 206 126 1 27 232 10 207 9.39e-42 141
MS.gene060519.t1 MTR_8g103550 42.500 160 92 0 28 187 11 170 1.07e-41 140
MS.gene060519.t1 MTR_1g068730 50.000 120 60 0 24 143 13 132 1.26e-41 140
MS.gene060519.t1 MTR_7g103070 45.679 162 86 2 24 183 14 175 1.47e-41 141
MS.gene060519.t1 MTR_8g090215 41.401 157 92 0 27 183 10 166 2.35e-41 140
MS.gene060519.t1 MTR_2g102060 39.444 180 103 1 28 207 12 185 3.03e-41 140
MS.gene060519.t1 MTR_4g098950 38.854 157 96 0 27 183 10 166 1.68e-40 138
MS.gene060519.t1 MTR_1g062760 44.444 171 92 3 24 192 12 181 3.93e-40 137
MS.gene060519.t1 MTR_1g090717 44.186 172 93 3 24 192 13 184 1.27e-36 128
MS.gene060519.t1 MTR_3g096350 43.537 147 77 4 15 159 1 143 2.41e-36 125
MS.gene060519.t1 MTR_3g064390 45.312 128 70 0 28 155 12 139 3.25e-35 123
MS.gene060519.t1 MTR_3g096350 46.212 132 68 3 15 144 1 131 1.12e-34 121
MS.gene060519.t1 MTR_8g093740 45.113 133 71 2 57 187 10 142 7.13e-34 120
MS.gene060519.t1 MTR_4g069850 33.937 221 124 6 19 232 1 206 1.34e-32 117
MS.gene060519.t1 MTR_8g092020 34.579 214 117 6 26 232 12 209 5.41e-32 116
MS.gene060519.t1 MTR_1g097420 37.423 163 95 3 26 181 8 170 1.02e-30 113
MS.gene060519.t1 MTR_2g101890 37.654 162 94 3 26 180 10 171 4.26e-30 111
MS.gene060519.t1 MTR_4g012940 33.032 221 127 6 19 232 1 207 8.18e-30 110
MS.gene060519.t1 MTR_7g103070 46.610 118 61 2 68 183 2 119 4.81e-29 107
MS.gene060519.t1 MTR_6g039490 35.583 163 98 3 26 181 8 170 1.10e-27 105
MS.gene060519.t1 MTR_2g005500 33.333 189 85 2 24 211 7 155 1.58e-25 98.2
MS.gene060519.t1 MTR_1g097420 34.545 165 99 4 24 181 35 197 1.68e-25 100
MS.gene060519.t1 MTR_8g031810 43.269 104 45 1 25 128 5 94 5.52e-23 89.7
MS.gene060519.t1 MTR_3g107717 30.198 202 134 5 20 220 6 201 1.37e-21 89.4
MS.gene060519.t1 MTR_3g107713 33.136 169 109 4 20 187 6 171 1.38e-21 89.4
MS.gene060519.t1 MTR_3g107707 33.136 169 109 4 20 187 6 171 1.44e-21 89.4
MS.gene060519.t1 MTR_1g069245 35.570 149 71 3 6 133 55 199 3.28e-20 85.9
MS.gene060519.t1 MTR_4g073250 39.496 119 69 3 28 145 8 124 3.96e-20 85.1
MS.gene060519.t1 MTR_4g088055 38.655 119 70 3 28 145 8 124 4.17e-20 85.1
MS.gene060519.t1 MTR_5g022600 38.655 119 70 3 28 145 8 124 4.59e-20 84.7
MS.gene060519.t1 MTR_2g090875 33.939 165 95 5 28 180 8 170 4.88e-20 84.7
MS.gene060519.t1 MTR_3g078260 35.758 165 92 6 28 180 10 172 9.39e-20 84.3
MS.gene060519.t1 MTR_8g075240 31.522 184 97 7 28 204 8 169 1.02e-19 84.0
MS.gene060519.t1 MTR_6g087980 31.604 212 116 8 28 232 8 197 1.47e-19 84.0
MS.gene060519.t1 MTR_2g078000 61.224 49 19 0 87 135 46 94 1.34e-17 75.9
MS.gene060519.t1 MTR_1452s0010 46.377 69 37 0 56 124 11 79 6.08e-17 73.9
MS.gene060519.t1 MTR_3g078260 36.842 114 69 3 28 140 10 121 2.59e-16 73.6
MS.gene060519.t1 MTR_4g113620 29.630 162 102 5 26 187 13 162 1.24e-14 70.5
MS.gene060519.t1 MTR_1g059590 32.335 167 106 3 29 195 398 557 1.61e-14 72.4
MS.gene060519.t1 MTR_1g059590 32.335 167 106 3 29 195 431 590 1.87e-14 72.4
MS.gene060519.t1 MTR_1686s0010 36.905 84 53 0 54 137 9 92 3.47e-14 66.2
MS.gene060519.t1 MTR_3g053480 51.667 60 26 1 12 71 5 61 7.15e-14 64.7
MS.gene060519.t1 MTR_8g099250 54.386 57 23 1 12 68 5 58 1.18e-13 64.3
MS.gene060519.t1 MTR_2g078560 56.522 46 20 0 88 133 54 99 1.19e-12 66.6
MS.gene060519.t1 MTR_5g092060 27.322 183 118 5 5 180 88 262 6.63e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene060519.t1 AT1G01200 73.077 234 59 3 2 232 5 237 1.83e-118 337
MS.gene060519.t1 AT5G65270 66.019 206 62 2 18 217 9 212 2.38e-97 283
MS.gene060519.t1 AT5G47960 67.453 212 63 3 14 220 3 213 1.30e-95 279
MS.gene060519.t1 AT3G12160 66.667 207 61 2 18 218 7 211 2.10e-95 278
MS.gene060519.t1 AT4G39990 64.151 212 69 4 22 230 13 220 1.12e-92 271
MS.gene060519.t1 AT4G18800 58.796 216 82 2 17 231 4 213 2.69e-87 257
MS.gene060519.t1 AT5G60860 56.744 215 91 1 17 231 4 216 1.62e-86 256
MS.gene060519.t1 AT3G15060 56.279 215 92 1 17 231 4 216 1.59e-85 253
MS.gene060519.t1 AT1G16920 57.407 216 87 2 17 231 4 215 4.11e-85 252
MS.gene060519.t1 AT1G09630 59.204 201 80 1 20 218 6 206 5.96e-85 251
MS.gene060519.t1 AT1G28550 57.143 217 90 2 17 232 4 218 1.20e-84 251
MS.gene060519.t1 AT5G45750 56.944 216 88 2 17 231 4 215 1.35e-84 251
MS.gene060519.t1 AT1G07410 59.799 199 73 2 19 213 5 200 5.29e-84 249
MS.gene060519.t1 AT2G33870 55.300 217 94 2 17 232 4 218 6.04e-84 249
MS.gene060519.t1 AT5G59150 65.169 178 62 0 17 194 3 180 5.14e-83 247
MS.gene060519.t1 AT4G18430 54.884 215 95 1 17 231 4 216 2.76e-82 245
MS.gene060519.t1 AT3G46830 63.889 180 65 0 15 194 1 180 2.86e-82 245
MS.gene060519.t1 AT3G46830 63.889 180 65 0 15 194 1 180 2.86e-82 245
MS.gene060519.t1 AT1G06400 53.704 216 95 2 17 231 4 215 4.63e-80 239
MS.gene060519.t1 AT5G47520 60.694 173 68 0 24 196 12 184 1.61e-74 225
MS.gene060519.t1 AT1G05810 53.807 197 91 0 6 202 38 234 6.26e-73 223
MS.gene060519.t1 AT1G05810 56.216 185 81 0 18 202 4 188 3.65e-72 219
MS.gene060519.t1 AT1G73640 59.429 175 71 0 20 194 7 181 1.89e-71 218
MS.gene060519.t1 AT2G43130 54.595 185 84 0 18 202 4 188 2.19e-71 217
MS.gene060519.t1 AT3G07410 52.404 208 98 1 24 231 10 216 2.49e-71 217
MS.gene060519.t1 AT2G31680 55.307 179 80 0 24 202 10 188 2.83e-70 214
MS.gene060519.t1 AT1G18200 56.000 175 77 0 20 194 7 181 2.54e-67 207
MS.gene060519.t1 AT4G35860 49.180 183 89 1 24 202 4 186 6.11e-58 182
MS.gene060519.t1 AT4G17170 49.432 176 89 0 25 200 5 180 1.51e-57 182
MS.gene060519.t1 AT4G17160 48.333 180 93 0 25 204 5 184 2.05e-56 179
MS.gene060519.t1 AT1G02130 44.330 194 107 1 19 211 1 194 5.77e-55 175
MS.gene060519.t1 AT5G47200 42.424 198 114 0 19 216 1 198 4.65e-54 172
MS.gene060519.t1 AT5G59150 63.780 127 46 0 68 194 3 129 4.92e-54 171
MS.gene060519.t1 AT4G17530 42.424 198 114 0 19 216 1 198 1.42e-53 171
MS.gene060519.t1 AT3G11730 47.337 169 89 0 19 187 1 169 3.68e-53 170
MS.gene060519.t1 AT3G53610 46.667 165 87 1 24 187 13 177 2.62e-50 163
MS.gene060519.t1 AT3G53610 46.667 165 87 1 24 187 13 177 2.62e-50 163
MS.gene060519.t1 AT3G53610 46.667 165 87 1 24 187 13 177 2.62e-50 163
MS.gene060519.t1 AT3G46060 45.882 170 91 1 24 192 13 182 3.04e-50 163
MS.gene060519.t1 AT3G46060 45.882 170 91 1 24 192 13 182 3.04e-50 163
MS.gene060519.t1 AT3G46060 45.882 170 91 1 24 192 13 182 3.04e-50 163
MS.gene060519.t1 AT5G59840 46.061 165 88 1 24 187 13 177 1.10e-49 162
MS.gene060519.t1 AT3G09900 47.879 165 85 1 24 187 13 177 6.08e-49 160
MS.gene060519.t1 AT5G03520 47.273 165 86 1 24 187 13 177 6.74e-49 160
MS.gene060519.t1 AT4G19640 41.081 185 104 1 28 212 12 191 2.40e-48 158
MS.gene060519.t1 AT3G54840 47.337 169 84 2 28 195 35 199 4.45e-47 155
MS.gene060519.t1 AT3G54840 47.024 168 84 2 29 195 2 165 9.38e-47 153
MS.gene060519.t1 AT5G45130 43.558 163 92 0 28 190 12 174 2.22e-46 153
MS.gene060519.t1 AT3G54840 49.351 154 77 1 28 180 35 188 5.82e-46 151
MS.gene060519.t1 AT5G45130 43.478 161 91 0 30 190 22 182 3.98e-45 150
MS.gene060519.t1 AT1G43890 45.882 170 89 3 20 187 7 175 3.96e-44 147
MS.gene060519.t1 AT1G43890 45.882 170 89 3 20 187 7 175 3.96e-44 147
MS.gene060519.t1 AT1G43890 45.882 170 89 3 20 187 7 175 3.96e-44 147
MS.gene060519.t1 AT4G35860 50.360 139 65 1 68 202 2 140 9.86e-44 145
MS.gene060519.t1 AT5G10260 42.038 157 91 0 27 183 10 166 3.25e-43 145
MS.gene060519.t1 AT2G44610 40.764 157 93 0 27 183 10 166 8.15e-42 141
MS.gene060519.t1 AT2G22290 40.127 157 94 0 27 183 10 166 7.26e-40 136
MS.gene060519.t1 AT5G64990 40.127 157 94 0 27 183 8 164 7.72e-39 134
MS.gene060519.t1 AT4G39890 37.725 167 103 1 27 192 10 176 1.09e-38 134
MS.gene060519.t1 AT5G03530 43.860 171 93 3 24 192 11 180 1.44e-38 133
MS.gene060519.t1 AT5G03530 43.860 171 93 3 24 192 11 180 1.44e-38 133
MS.gene060519.t1 AT5G03520 46.875 128 67 1 61 187 40 167 3.48e-38 132
MS.gene060519.t1 AT4G19640 44.800 125 69 0 28 152 12 136 6.20e-37 127
MS.gene060519.t1 AT4G19640 43.511 131 74 0 28 158 12 142 1.96e-36 127
MS.gene060519.t1 AT5G64990 38.415 164 94 1 27 183 8 171 3.49e-36 127
MS.gene060519.t1 AT3G09910 41.848 184 94 4 24 195 11 193 6.86e-36 126
MS.gene060519.t1 AT3G09910 41.848 184 94 4 24 195 11 193 6.86e-36 126
MS.gene060519.t1 AT3G09910 41.848 184 94 4 24 195 11 193 6.86e-36 126
MS.gene060519.t1 AT3G09910 43.827 162 88 3 24 183 11 171 3.77e-35 124
MS.gene060519.t1 AT3G09910 43.827 162 88 3 24 183 11 171 3.77e-35 124
MS.gene060519.t1 AT3G18820 33.937 221 124 6 19 232 1 206 2.38e-32 117
MS.gene060519.t1 AT1G52280 38.824 170 95 4 19 180 1 169 1.03e-31 115
MS.gene060519.t1 AT2G21880 36.364 165 98 3 26 183 9 173 1.55e-30 112
MS.gene060519.t1 AT4G09720 38.554 166 93 4 26 183 8 172 2.00e-30 112
MS.gene060519.t1 AT3G16100 38.235 170 96 4 19 180 1 169 2.13e-30 112
MS.gene060519.t1 AT1G49300 37.427 171 98 4 19 181 1 170 2.59e-30 112
MS.gene060519.t1 AT1G49300 37.427 171 98 4 19 181 1 170 2.59e-30 112
MS.gene060519.t1 AT1G22740 35.294 170 103 3 19 181 1 170 3.06e-30 111
MS.gene060519.t1 AT4G09720 36.471 170 96 3 26 183 8 177 8.69e-30 110
MS.gene060519.t1 AT4G09720 35.227 176 96 3 26 183 8 183 9.39e-29 108
MS.gene060519.t1 AT5G39620 32.864 213 122 6 27 232 6 204 3.17e-27 103
MS.gene060519.t1 AT5G55080 32.716 162 106 2 26 187 13 171 3.25e-25 99.0
MS.gene060519.t1 AT5G46025 48.148 108 54 2 88 193 6 113 2.97e-24 93.6
MS.gene060519.t1 AT2G44690 35.294 187 104 6 28 199 20 204 9.02e-24 95.1
MS.gene060519.t1 AT2G21880 33.784 148 91 3 43 183 1 148 1.77e-22 90.9
MS.gene060519.t1 AT2G21880 33.784 148 91 3 43 183 1 148 1.77e-22 90.9
MS.gene060519.t1 AT4G09720 37.778 135 77 3 56 183 4 138 1.30e-21 88.2
MS.gene060519.t1 AT4G09720 37.778 135 77 3 56 183 4 138 1.30e-21 88.2
MS.gene060519.t1 AT4G09720 37.778 135 77 3 56 183 4 138 1.30e-21 88.2
MS.gene060519.t1 AT5G20020 33.136 169 109 4 20 187 6 171 1.33e-21 89.7
MS.gene060519.t1 AT5G55190 33.136 169 109 4 20 187 6 171 1.41e-21 89.4
MS.gene060519.t1 AT5G20010 33.136 169 109 4 20 187 6 171 1.68e-21 89.4
MS.gene060519.t1 AT4G35950 32.609 184 95 7 28 204 8 169 5.75e-21 87.4
MS.gene060519.t1 AT2G21880 31.515 165 98 4 26 183 9 165 8.95e-21 87.0
MS.gene060519.t1 AT4G35020 36.364 165 91 5 28 180 8 170 1.41e-20 86.3
MS.gene060519.t1 AT4G35020 36.364 165 91 5 28 180 8 170 1.41e-20 86.3
MS.gene060519.t1 AT4G35020 36.364 165 91 5 28 180 8 170 1.41e-20 86.3
MS.gene060519.t1 AT1G75840 34.545 165 94 5 28 180 8 170 2.22e-20 85.9
MS.gene060519.t1 AT2G17800 32.065 184 96 7 28 204 8 169 2.36e-20 85.5
MS.gene060519.t1 AT2G17800 32.065 184 96 7 28 204 8 169 2.36e-20 85.5
MS.gene060519.t1 AT1G20090 33.939 165 95 5 28 180 7 169 4.90e-20 84.7
MS.gene060519.t1 AT3G51300 38.655 119 70 3 28 145 8 124 2.09e-19 83.2
MS.gene060519.t1 AT4G28950 39.496 119 69 3 28 145 8 124 4.31e-19 82.4
MS.gene060519.t1 AT4G35020 39.474 114 66 3 28 140 8 119 1.33e-18 79.7
MS.gene060519.t1 AT4G35020 39.474 114 66 3 28 140 8 119 1.33e-18 79.7
MS.gene060519.t1 AT5G45970 37.815 119 71 3 28 145 8 124 5.18e-18 79.7
MS.gene060519.t1 AT5G62880 31.844 179 94 6 28 187 10 179 7.58e-18 79.3
MS.gene060519.t1 AT3G48040 33.939 165 95 5 28 180 10 172 1.02e-17 79.0
MS.gene060519.t1 AT5G62880 36.496 137 77 5 28 163 10 137 1.18e-17 78.2
MS.gene060519.t1 AT3G48040 38.017 121 72 3 28 147 10 128 3.45e-17 76.6
MS.gene060519.t1 AT4G08190 51.562 64 28 1 117 180 67 127 1.36e-12 63.2
MS.gene060519.t1 AT3G21700 25.967 181 118 6 8 180 93 265 1.38e-11 63.2
MS.gene060519.t1 AT3G51290 39.241 79 46 2 68 145 648 725 6.72e-11 62.0

Find 41 sgRNAs with CRISPR-Local

Find 88 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAAATAGATTATGTGTTTA+AGG 0.114114 8.1:+75204795 MS.gene060519:CDS
CATTTGATCATGTTGCTAAA+TGG 0.168189 8.1:+75206062 MS.gene060519:CDS
TAATAGTGTAGTTTCTAAAA+AGG 0.249947 8.1:+75206285 MS.gene060519:CDS
ACTAGGACTGTCACTATTAA+TGG 0.266282 8.1:+75204925 MS.gene060519:CDS
GTGAAGGGGATTGCACTAAA+AGG 0.273863 8.1:+75206325 MS.gene060519:CDS
TCAGAGACTTCAGCTCTTAC+TGG 0.284192 8.1:+75206220 MS.gene060519:CDS
TGAGAGATATGAACCTTTCT+TGG 0.302562 8.1:-75204984 None:intergenic
GCATACTACAGAGGTGCATT+AGG 0.309940 8.1:+75206004 MS.gene060519:CDS
ATGATCAAATGATTGTCTTT+TGG 0.311811 8.1:-75206050 None:intergenic
TCTAAGATTGATGTAATTTC+AGG 0.313382 8.1:+75206349 MS.gene060519:CDS
TAATAGTGACAGTCCTAGTT+TGG 0.324166 8.1:-75204921 None:intergenic
GGTGAGAAGAAGCAAGAAAA+TGG 0.345259 8.1:+75204742 MS.gene060519:CDS
TTTGACTCAAAGTCAACTAT+TGG 0.354196 8.1:+75204889 MS.gene060519:CDS
TGTAATTTCAGGTGCTGAAT+TGG 0.361003 8.1:+75206360 MS.gene060519:CDS
CATACTACAGAGGTGCATTA+GGG 0.375525 8.1:+75206005 MS.gene060519:CDS
CAAGAAAATAGATTATGATA+TGG 0.396441 8.1:+75204768 MS.gene060519:CDS
AAGTTATTAAAGCTCAGATC+TGG 0.402064 8.1:+75204950 MS.gene060519:CDS
ATTTGATCATGTTGCTAAAT+GGG 0.407497 8.1:+75206063 MS.gene060519:CDS
GTGTTTAAGGTTGTTGTCAT+TGG 0.414253 8.1:+75204808 MS.gene060519:CDS
GGGATACTGCTGGCCAAGAA+AGG 0.510670 8.1:+75204971 MS.gene060519:CDS
TGAAGGGGATTGCACTAAAA+GGG 0.515906 8.1:+75206326 MS.gene060519:CDS
AGCTCTTACTGGTGTGAATG+TGG 0.537237 8.1:+75206231 MS.gene060519:CDS
TGACCTTGTTGATTTGAGAA+TGG 0.538385 8.1:+75206147 MS.gene060519:CDS
TCAATTGTGATCATGCTAGT+TGG 0.549084 8.1:+75206115 MS.gene060519:CDS
AGTTATTAAAGCTCAGATCT+GGG 0.556672 8.1:+75204951 MS.gene060519:CDS
TTGGAATGTGGTAATGTGAA+GGG 0.563064 8.1:+75206310 MS.gene060519:CDS
GCTCAGATCTGGGATACTGC+TGG 0.566767 8.1:+75204961 MS.gene060519:CDS
TTGGAGTTGAATTCCAAACT+AGG 0.571652 8.1:+75204908 MS.gene060519:CDS
TCATGTTGCTAAATGGGTTG+AGG 0.586597 8.1:+75206069 MS.gene060519:CDS
CTTACTGGTGTGAATGTGGA+GGG 0.593992 8.1:+75206235 MS.gene060519:CDS
TCTTACTGGTGTGAATGTGG+AGG 0.594853 8.1:+75206234 MS.gene060519:CDS
AACTCAACTGCATCTTCAGT+AGG 0.619231 8.1:-75206172 None:intergenic
GTCATTGGTGACTCAGCAGT+AGG 0.628855 8.1:+75204823 MS.gene060519:CDS
GTTGAGTTTGCAGAAGACCA+AGG 0.629515 8.1:+75206187 MS.gene060519:CDS
TCTCTGAGAAGAATAAACCT+TGG 0.630408 8.1:-75206204 None:intergenic
TGGAATGTGGTAATGTGAAG+GGG 0.631602 8.1:+75206311 MS.gene060519:CDS
ATTGGAATGTGGTAATGTGA+AGG 0.637056 8.1:+75206309 MS.gene060519:CDS
ATCATGCTAGTTGGTAACAA+AGG 0.656634 8.1:+75206124 MS.gene060519:CDS
ATACTACAGAGGTGCATTAG+GGG 0.672037 8.1:+75206006 MS.gene060519:CDS
GAACCATTCTCAAATCAACA+AGG 0.712150 8.1:-75206150 None:intergenic
GTAACAAGTGCATACTACAG+AGG 0.722008 8.1:+75205995 MS.gene060519:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GTTTTATATAGATATTTTAT+AGG - chr8.1:75205690-75205709 None:intergenic 10.0%
!! AAATAAATATCAGTTATATG+TGG + chr8.1:75205831-75205850 MS.gene060519:intron 15.0%
!! ATTATGTTACATTAATGTTC+TGG + chr8.1:75205287-75205306 MS.gene060519:intron 20.0%
!! CAAGAAAATAGATTATGATA+TGG + chr8.1:75204768-75204787 MS.gene060519:CDS 20.0%
!! GAAAAACTCAAATATTATCA+AGG + chr8.1:75204845-75204864 MS.gene060519:CDS 20.0%
!! GAAAATAGATTATGTGTTTA+AGG + chr8.1:75204795-75204814 MS.gene060519:CDS 20.0%
!! TCAAAATGGTACATAATTAA+TGG + chr8.1:75205088-75205107 MS.gene060519:intron 20.0%
!! TTATTATTGCAATATTAGTG+TGG + chr8.1:75205197-75205216 MS.gene060519:intron 20.0%
!!! AAAGTCAATAATTTGTGTAT+TGG - chr8.1:75205739-75205758 None:intergenic 20.0%
!!! AGTGTTATTTTTTTTAACCA+AGG - chr8.1:75205888-75205907 None:intergenic 20.0%
!!! ATTATTGACTTTTAAGCATA+TGG + chr8.1:75205747-75205766 MS.gene060519:intron 20.0%
!!! TAATAGTGTAGTTTCTAAAA+AGG + chr8.1:75206285-75206304 MS.gene060519:CDS 20.0%
! AACTACATTGAGTTTCAAAA+TGG + chr8.1:75205074-75205093 MS.gene060519:intron 25.0%
! ATTCTCATAAGAAGATTAGT+CGG + chr8.1:75205641-75205660 MS.gene060519:intron 25.0%
! ATTTGATCATGTTGCTAAAT+GGG + chr8.1:75206063-75206082 MS.gene060519:CDS 25.0%
! GGTAAATGATCAATTGTTAT+CGG - chr8.1:75205718-75205737 None:intergenic 25.0%
!! ATGATCAAATGATTGTCTTT+TGG - chr8.1:75206053-75206072 None:intergenic 25.0%
!! CTGAACAATTTTCAATTCAT+TGG - chr8.1:75205411-75205430 None:intergenic 25.0%
!! GTAAATTTTGTTGCTGATAT+AGG + chr8.1:75205963-75205982 MS.gene060519:intron 25.0%
!! TCTAAGATTGATGTAATTTC+AGG + chr8.1:75206349-75206368 MS.gene060519:CDS 25.0%
AAGTTATTAAAGCTCAGATC+TGG + chr8.1:75204950-75204969 MS.gene060519:CDS 30.0%
ACGAAGACGTAAAAAATGTT+GGG + chr8.1:75205793-75205812 MS.gene060519:intron 30.0%
AGTTATTAAAGCTCAGATCT+GGG + chr8.1:75204951-75204970 MS.gene060519:CDS 30.0%
CATTTGATCATGTTGCTAAA+TGG + chr8.1:75206062-75206081 MS.gene060519:CDS 30.0%
CTCTTGCATATGAAGAAATT+AGG + chr8.1:75205576-75205595 MS.gene060519:intron 30.0%
GTATGTTTCTTACGTCAAAA+TGG - chr8.1:75205252-75205271 None:intergenic 30.0%
TAAAAAATGTTGGGAGAGAT+CGG + chr8.1:75205802-75205821 MS.gene060519:intron 30.0%
TACGAAGACGTAAAAAATGT+TGG + chr8.1:75205792-75205811 MS.gene060519:intron 30.0%
TGAAACTCAATGTAGTTCAA+GGG - chr8.1:75205071-75205090 None:intergenic 30.0%
TGGTCAAATGATTGATACTT+AGG + chr8.1:75205767-75205786 MS.gene060519:intron 30.0%
TTAGTCTCTGTAGTTGTATA+CGG + chr8.1:75205856-75205875 MS.gene060519:intron 30.0%
TTGAAACTCAATGTAGTTCA+AGG - chr8.1:75205072-75205091 None:intergenic 30.0%
TTGCAATATTAGTGTGGTAT+TGG + chr8.1:75205203-75205222 MS.gene060519:intron 30.0%
TTTAAGTATGAGACAGTGAA+CGG + chr8.1:75205319-75205338 MS.gene060519:intron 30.0%
TTTGACTCAAAGTCAACTAT+TGG + chr8.1:75204889-75204908 MS.gene060519:CDS 30.0%
! TGTAGTTTCTAAAAAGGCAT+TGG + chr8.1:75206291-75206310 MS.gene060519:CDS 30.0%
! TGTTACATTAATGTTCTGGA+AGG + chr8.1:75205291-75205310 MS.gene060519:intron 30.0%
!! ATTATACCCTGCTTTAGAAA+AGG + chr8.1:75205371-75205390 MS.gene060519:intron 30.0%
!! GTTACATTAATGTTCTGGAA+GGG + chr8.1:75205292-75205311 MS.gene060519:intron 30.0%
!! TTACATTAATGTTCTGGAAG+GGG + chr8.1:75205293-75205312 MS.gene060519:intron 30.0%
AACTCATGTCAGTGTGTTAT+TGG - chr8.1:75205496-75205515 None:intergenic 35.0%
ACTAGGACTGTCACTATTAA+TGG + chr8.1:75204925-75204944 MS.gene060519:CDS 35.0%
AGTGTGTGCATTAATGGTAA+AGG + chr8.1:75205429-75205448 MS.gene060519:intron 35.0%
ATAACACACTGACATGAGTT+TGG + chr8.1:75205496-75205515 MS.gene060519:intron 35.0%
GAACCATTCTCAAATCAACA+AGG - chr8.1:75206153-75206172 None:intergenic 35.0%
GTGTGTGCATTAATGGTAAA+GGG + chr8.1:75205430-75205449 MS.gene060519:intron 35.0%
TAATAGTGACAGTCCTAGTT+TGG - chr8.1:75204924-75204943 None:intergenic 35.0%
TAGTTCAAGGGAAATAGAGA+AGG - chr8.1:75205059-75205078 None:intergenic 35.0%
TCAATTGTGATCATGCTAGT+TGG + chr8.1:75206115-75206134 MS.gene060519:CDS 35.0%
TGAGAGATATGAACCTTTCT+TGG - chr8.1:75204987-75205006 None:intergenic 35.0%
TTGGAGTTGAATTCCAAACT+AGG + chr8.1:75204908-75204927 MS.gene060519:CDS 35.0%
TTGTTCAGTGTGTGCATTAA+TGG + chr8.1:75205423-75205442 MS.gene060519:intron 35.0%
! ATTGGAATGTGGTAATGTGA+AGG + chr8.1:75206309-75206328 MS.gene060519:CDS 35.0%
! GTGTTTAAGGTTGTTGTCAT+TGG + chr8.1:75204808-75204827 MS.gene060519:CDS 35.0%
! TCGGTGTTTAGATACTTCAT+AGG + chr8.1:75205660-75205679 MS.gene060519:intron 35.0%
! TCTCTGAGAAGAATAAACCT+TGG - chr8.1:75206207-75206226 None:intergenic 35.0%
! TTGGAATGTGGTAATGTGAA+GGG + chr8.1:75206310-75206329 MS.gene060519:CDS 35.0%
!! AGAGTGCTCATTTTTAACTG+AGG - chr8.1:75205115-75205134 None:intergenic 35.0%
!! ATCATGCTAGTTGGTAACAA+AGG + chr8.1:75206124-75206143 MS.gene060519:CDS 35.0%
!! TCTAAAAAGGCATTGGAATG+TGG + chr8.1:75206298-75206317 MS.gene060519:CDS 35.0%
!! TGACCTTGTTGATTTGAGAA+TGG + chr8.1:75206147-75206166 MS.gene060519:CDS 35.0%
!! TGTAATTTCAGGTGCTGAAT+TGG + chr8.1:75206360-75206379 MS.gene060519:CDS 35.0%
AACTCAACTGCATCTTCAGT+AGG - chr8.1:75206175-75206194 None:intergenic 40.0%
GGTGAGAAGAAGCAAGAAAA+TGG + chr8.1:75204742-75204761 MS.gene060519:CDS 40.0%
GTAACAAGTGCATACTACAG+AGG + chr8.1:75205995-75206014 MS.gene060519:CDS 40.0%
GTTGTATACGGAATATGCCT+TGG + chr8.1:75205868-75205887 MS.gene060519:intron 40.0%
TGAAGGGGATTGCACTAAAA+GGG + chr8.1:75206326-75206345 MS.gene060519:CDS 40.0%
TGACATGAGTTTGGTACAAG+TGG + chr8.1:75205505-75205524 MS.gene060519:intron 40.0%
! ATACTACAGAGGTGCATTAG+GGG + chr8.1:75206006-75206025 MS.gene060519:CDS 40.0%
! CATACTACAGAGGTGCATTA+GGG + chr8.1:75206005-75206024 MS.gene060519:CDS 40.0%
! TATGAGACAGTGAACGGTTT+TGG + chr8.1:75205325-75205344 MS.gene060519:intron 40.0%
! TGGAATGTGGTAATGTGAAG+GGG + chr8.1:75206311-75206330 MS.gene060519:CDS 40.0%
!! TACCCTGCTTTAGAAAAGGT+AGG + chr8.1:75205375-75205394 MS.gene060519:intron 40.0%
!! TCATGTTGCTAAATGGGTTG+AGG + chr8.1:75206069-75206088 MS.gene060519:CDS 40.0%
!!! CACCTACCTTTTCTAAAGCA+GGG - chr8.1:75205380-75205399 None:intergenic 40.0%
!!! TCACCTACCTTTTCTAAAGC+AGG - chr8.1:75205381-75205400 None:intergenic 40.0%
AGCTCTTACTGGTGTGAATG+TGG + chr8.1:75206231-75206250 MS.gene060519:CDS 45.0%
CTTACTGGTGTGAATGTGGA+GGG + chr8.1:75206235-75206254 MS.gene060519:CDS 45.0%
GATTATCACGCAGACACATG+TGG + chr8.1:75205141-75205160 MS.gene060519:intron 45.0%
GTGAAGGGGATTGCACTAAA+AGG + chr8.1:75206325-75206344 MS.gene060519:CDS 45.0%
GTTGAGTTTGCAGAAGACCA+AGG + chr8.1:75206187-75206206 MS.gene060519:CDS 45.0%
TCAGAGACTTCAGCTCTTAC+TGG + chr8.1:75206220-75206239 MS.gene060519:CDS 45.0%
TCTTACTGGTGTGAATGTGG+AGG + chr8.1:75206234-75206253 MS.gene060519:CDS 45.0%
! GCATACTACAGAGGTGCATT+AGG + chr8.1:75206004-75206023 MS.gene060519:CDS 45.0%
! GTCATTGGTGACTCAGCAGT+AGG + chr8.1:75204823-75204842 MS.gene060519:CDS 50.0%
GGGATACTGCTGGCCAAGAA+AGG + chr8.1:75204971-75204990 MS.gene060519:CDS 55.0%
GTACAAGTGGCACGAGACTC+AGG + chr8.1:75205518-75205537 MS.gene060519:intron 55.0%
! GCTCAGATCTGGGATACTGC+TGG + chr8.1:75204961-75204980 MS.gene060519:CDS 55.0%


Chromosome Type Strat End Strand Name
chr8.1 gene 75204733 75206423 75204733 ID=MS.gene060519
chr8.1 mRNA 75204733 75206423 75204733 ID=MS.gene060519.t1;Parent=MS.gene060519
chr8.1 exon 75204733 75204992 75204733 ID=MS.gene060519.t1.exon1;Parent=MS.gene060519.t1
chr8.1 CDS 75204733 75204992 75204733 ID=cds.MS.gene060519.t1;Parent=MS.gene060519.t1
chr8.1 exon 75205985 75206423 75205985 ID=MS.gene060519.t1.exon2;Parent=MS.gene060519.t1
chr8.1 CDS 75205985 75206423 75205985 ID=cds.MS.gene060519.t1;Parent=MS.gene060519.t1
Gene Sequence

>MS.gene060519

ATGGTACAGGGTGAGAAGAAGCAAGAAAATGGACACAAGAAAATAGATTATGATATGGAAGAGAAAATAGATTATGTGTTTAAGGTTGTTGTCATTGGTGACTCAGCAGTAGGAAAAACTCAAATATTATCAAGGTTTTCAAAGAATGAGTTTTGCTTTGACTCAAAGTCAACTATTGGAGTTGAATTCCAAACTAGGACTGTCACTATTAATGGTAAAGTTATTAAAGCTCAGATCTGGGATACTGCTGGCCAAGAAAGGTTCATATCTCTCATCTCTCATTTTTGCTTGTGTGTTTGATTTCTTTGTTTACTTTTTTTAGTCCTTCTCTATTTCCCTTGAACTACATTGAGTTTCAAAATGGTACATAATTAATGGTCCTCAGTTAAAAATGAGCACTCTGACAGTGATTATCACGCAGACACATGTGGTTACATTTAATTATAATTATTTTATTTTTTTAATTATTATTGCAATATTAGTGTGGTATTGGTGACTCTCTAAGCTTCATGCATACCATTTTGACGTAAGAAACATACATTATAAAAAAGCACATTATGTTACATTAATGTTCTGGAAGGGGTTTTTTAAGTATGAGACAGTGAACGGTTTTGGATGAATGCATTGCTTTTTAGAAGATTATACCCTGCTTTAGAAAAGGTAGGTGACTAGATTCCAATGAATTGAAAATTGTTCAGTGTGTGCATTAATGGTAAAGGGAAATACATTTTCAATAAATTGAACTTATTGTTAAAGTATACCAATAACACACTGACATGAGTTTGGTACAAGTGGCACGAGACTCAGGTAACTTAAGTAAGTGATCAGAAGTTTGATTATTGACTCTTGCATATGAAGAAATTAGGTTAAAAATTAAAATGAGAGAATATAGATTATATGCACAACAAATTCTCATAAGAAGATTAGTCGGTGTTTAGATACTTCATAGGAGTACCTATAAAATATCTATATAAAACGTATACCGATAACAATTGATCATTTACCAATACACAAATTATTGACTTTTAAGCATATGGTCAAATGATTGATACTTAGGTTTACGAAGACGTAAAAAATGTTGGGAGAGATCGGCATCTTAAATAAATATCAGTTATATGTGGAATTAGTCTCTGTAGTTGTATACGGAATATGCCTTGGTTAAAAAAAATAACACTTGATCATTTAAGTGTAGACTGCAAGATAAATTCTTTTGACATATTATATATACATGTAAATTTTGTTGCTGATATAGGTACAGAGCTGTAACAAGTGCATACTACAGAGGTGCATTAGGGGCAATGCTAGTATATGACATAACCAAAAGACAATCATTTGATCATGTTGCTAAATGGGTTGAGGAACTTAGAGCACATGCAGATAACTCAATTGTGATCATGCTAGTTGGTAACAAAGGTGACCTTGTTGATTTGAGAATGGTTCCTACTGAAGATGCAGTTGAGTTTGCAGAAGACCAAGGTTTATTCTTCTCAGAGACTTCAGCTCTTACTGGTGTGAATGTGGAGGGTGCATTTATCAAATTGCTAGAAGAGATTAATAGTGTAGTTTCTAAAAAGGCATTGGAATGTGGTAATGTGAAGGGGATTGCACTAAAAGGGTCTAAGATTGATGTAATTTCAGGTGCTGAATTGGAAATTAGTGAGATAAAGAAGCTGTCTTCATGCTCTTGTTGA

Protein sequence

>MS.gene060519.t1

MVQGEKKQENGHKKIDYDMEEKIDYVFKVVVIGDSAVGKTQILSRFSKNEFCFDSKSTIGVEFQTRTVTINGKVIKAQIWDTAGQERYRAVTSAYYRGALGAMLVYDITKRQSFDHVAKWVEELRAHADNSIVIMLVGNKGDLVDLRMVPTEDAVEFAEDQGLFFSETSALTGVNVEGAFIKLLEEINSVVSKKALECGNVKGIALKGSKIDVISGAELEISEIKKLSSCSC