AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene072894

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene072894.t1 MTR_3g107320 96.610 826 28 0 1 826 1 826 0.0 1673
MS.gene072894.t1 MTR_3g107360 71.053 836 218 12 1 826 1 822 0.0 1213
MS.gene072894.t1 MTR_4g010650 63.942 832 261 10 5 826 6 808 0.0 1080
MS.gene072894.t1 MTR_2g103730 64.593 836 252 11 4 826 5 809 0.0 1076
MS.gene072894.t1 MTR_7g075910 45.574 836 402 18 4 815 298 1104 0.0 715
MS.gene072894.t1 MTR_8g033080 45.173 839 406 19 4 815 228 1039 0.0 711
MS.gene072894.t1 MTR_8g088690 44.074 869 400 19 4 826 14 842 0.0 692
MS.gene072894.t1 MTR_3g114840 43.815 865 417 20 5 826 13 851 0.0 685
MS.gene072894.t1 MTR_5g011050 43.690 840 413 21 4 815 37 844 0.0 670
MS.gene072894.t1 MTR_5g023050 40.365 877 448 17 5 826 16 872 0.0 660
MS.gene072894.t1 MTR_5g011060 43.046 834 421 19 4 815 37 838 0.0 658
MS.gene072894.t1 MTR_2g100250 44.156 770 380 17 62 826 32 756 0.0 621
MS.gene072894.t1 MTR_3g114840 42.969 768 374 17 5 729 13 759 0.0 591
MS.gene072894.t1 MTR_8g016160 41.497 788 394 22 44 826 20 745 0.0 558
MS.gene072894.t1 MTR_8g033080 43.891 622 304 14 4 603 228 826 1.31e-165 502
MS.gene072894.t1 MTR_1g083620 31.727 249 133 11 511 749 477 698 1.30e-21 101
MS.gene072894.t1 MTR_1g083620 31.064 235 119 9 217 438 120 324 9.81e-18 88.6
MS.gene072894.t1 MTR_1g083620 31.727 249 133 11 511 749 737 958 1.73e-21 100
MS.gene072894.t1 MTR_1g083620 31.064 235 119 9 217 438 380 584 6.92e-18 89.4
MS.gene072894.t1 MTR_2g435560 32.836 201 103 6 511 706 647 820 2.32e-19 94.0
MS.gene072894.t1 MTR_2g435560 29.134 254 126 10 217 449 246 466 1.67e-16 84.7
MS.gene072894.t1 MTR_2g435560 32.836 201 103 6 511 706 782 955 2.81e-19 94.0
MS.gene072894.t1 MTR_2g435560 29.134 254 126 10 217 449 381 601 1.31e-16 85.1
MS.gene072894.t1 MTR_5g023040 50.000 68 30 1 335 402 806 869 1.64e-15 81.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene072894.t1 AT3G15730 62.530 838 269 10 3 826 4 810 0.0 1071
MS.gene072894.t1 AT1G52570 61.722 836 277 12 4 826 5 810 0.0 1043
MS.gene072894.t1 AT1G52570 61.722 836 277 12 4 826 5 810 0.0 1043
MS.gene072894.t1 AT1G52570 61.722 836 277 12 4 826 5 810 0.0 1043
MS.gene072894.t1 AT5G25370 61.594 828 300 12 4 826 6 820 0.0 1015
MS.gene072894.t1 AT5G25370 61.594 828 300 12 4 826 6 820 0.0 1015
MS.gene072894.t1 AT5G25370 61.594 828 300 12 4 826 6 820 0.0 1015
MS.gene072894.t1 AT5G25370 63.588 747 260 9 85 826 6 745 0.0 960
MS.gene072894.t1 AT4G11830 44.418 842 416 20 1 815 30 846 0.0 709
MS.gene072894.t1 AT4G11830 46.332 777 373 18 66 815 55 814 0.0 700
MS.gene072894.t1 AT2G42010 43.870 832 419 17 4 815 270 1073 0.0 698
MS.gene072894.t1 AT4G11840 43.839 844 416 19 2 815 41 856 0.0 693
MS.gene072894.t1 AT2G42010 43.174 857 414 19 4 815 270 1098 0.0 690
MS.gene072894.t1 AT4G11850 44.286 840 414 19 2 815 37 848 0.0 685
MS.gene072894.t1 AT4G00240 43.990 832 418 17 4 815 114 917 0.0 684
MS.gene072894.t1 AT4G11840 43.452 840 395 18 2 815 41 826 0.0 681
MS.gene072894.t1 AT4G00240 45.714 770 383 14 66 815 11 765 0.0 679
MS.gene072894.t1 AT4G00240 45.714 770 383 14 66 815 128 882 0.0 678
MS.gene072894.t1 AT4G35790 41.935 868 438 15 4 826 11 857 0.0 673
MS.gene072894.t1 AT4G35790 41.638 879 436 16 4 826 11 868 0.0 666
MS.gene072894.t1 AT1G55180 42.351 791 389 22 49 826 4 740 0.0 612
MS.gene072894.t1 AT1G55180 42.132 788 390 21 50 826 30 762 0.0 604
MS.gene072894.t1 AT4G11830 43.291 626 318 13 1 610 30 634 2.51e-169 504
MS.gene072894.t1 AT4G35790 40.294 680 352 10 4 640 11 679 1.07e-168 504
MS.gene072894.t1 AT4G11830 43.514 609 307 13 1 593 30 617 4.84e-165 493
MS.gene072894.t1 AT3G05630 28.099 726 352 31 143 771 304 956 5.10e-44 172
MS.gene072894.t1 AT3G16785 35.961 203 96 7 510 706 756 930 7.29e-22 102
MS.gene072894.t1 AT3G16785 31.250 224 102 8 232 438 389 577 4.78e-18 90.1
MS.gene072894.t1 AT3G16785 35.961 203 96 7 510 706 756 930 7.29e-22 102
MS.gene072894.t1 AT3G16785 31.250 224 102 8 232 438 389 577 4.78e-18 90.1
MS.gene072894.t1 AT3G16785 35.961 203 96 7 510 706 756 930 7.89e-22 102
MS.gene072894.t1 AT3G16785 31.250 224 102 8 232 438 389 577 4.32e-18 90.1
MS.gene072894.t1 AT3G16785 35.961 203 96 7 510 706 756 930 7.89e-22 102
MS.gene072894.t1 AT3G16785 31.250 224 102 8 232 438 389 577 4.32e-18 90.1
MS.gene072894.t1 AT3G16785 35.961 203 96 7 510 706 756 930 8.47e-22 102
MS.gene072894.t1 AT3G16785 31.250 224 102 8 232 438 389 577 4.57e-18 90.1
MS.gene072894.t1 AT3G16785 35.961 203 96 7 510 706 756 930 9.29e-22 102
MS.gene072894.t1 AT3G16785 31.250 224 102 8 232 438 389 577 4.28e-18 90.1

Find 164 sgRNAs with CRISPR-Local

Find 216 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCAAAATCACCTGGGAAATT+TGG 0.100944 3.2:-87221023 None:intergenic
TTAATGCAATTCAAACTTTC+TGG 0.122895 3.2:-87222496 None:intergenic
TCCCTTACCTATCATCATTT+TGG 0.178826 3.2:-87222039 None:intergenic
TTGTATTTGAACATGGATTT+TGG 0.185371 3.2:-87220280 None:intergenic
GCTTGAACTGAAGCACTTTC+AGG 0.203277 3.2:-87221789 None:intergenic
AGCAGTTATGGTTCCATTAT+TGG 0.224317 3.2:-87222623 None:intergenic
AATCCATATATTTGTCCTTT+TGG 0.234668 3.2:-87222412 None:intergenic
ATCGATGCTGGTGCTGCTTC+TGG 0.242139 3.2:+87221462 MS.gene072894:CDS
CCCATTGGAGCAACTCTAAT+TGG 0.242527 3.2:+87220159 MS.gene072894:CDS
GTCTATTACTGGTGGCTATA+TGG 0.261291 3.2:-87222387 None:intergenic
CATCTTGGTAAAGAGTAATT+TGG 0.273836 3.2:-87220401 None:intergenic
AAAACATTTCACAGATTATT+GGG 0.279095 3.2:+87219992 MS.gene072894:intron
TTAATGTTCTTATGCTTGTT+TGG 0.298166 3.2:+87220655 MS.gene072894:CDS
CCAACAGAAGCCGCTGAAAA+AGG 0.298342 3.2:+87221498 MS.gene072894:CDS
TGAAAGGTTTCGTTCCATTT+GGG 0.301315 3.2:-87220081 None:intergenic
CCATTATTGGTTACTTGTAT+TGG 0.306443 3.2:-87222610 None:intergenic
CCAATACAAGTAACCAATAA+TGG 0.313741 3.2:+87222610 MS.gene072894:CDS
GATACTAAGGCTAAGATTCT+AGG 0.315033 3.2:+87222670 MS.gene072894:CDS
TGTCAACAATTATAGTCTTC+TGG 0.324805 3.2:-87220854 None:intergenic
GTGAAAGGTTTCGTTCCATT+TGG 0.328508 3.2:-87220082 None:intergenic
AAGAACATTAACACCTTCAT+TGG 0.328996 3.2:-87220643 None:intergenic
ACATTCTTTAAACAAAATAA+TGG 0.329312 3.2:+87220375 MS.gene072894:CDS
GTTGTTCTTGTTGACTTGTT+TGG 0.332002 3.2:-87220588 None:intergenic
TGGAGGAAGGTACTCAGATT+TGG 0.345102 3.2:-87222695 None:intergenic
GGAACCATAACTGCTCTTCC+AGG 0.349450 3.2:+87222631 MS.gene072894:CDS
CCACCAAAAGGACAAATATA+TGG 0.350161 3.2:+87222409 MS.gene072894:CDS
CCCTTTATGACTTGTTCAAC+TGG 0.351702 3.2:-87220195 None:intergenic
GTTGGAAGAACTAGAATGAT+AGG 0.353330 3.2:+87220054 MS.gene072894:CDS
TAATGTTCTTATGCTTGTTT+GGG 0.358547 3.2:+87220656 MS.gene072894:CDS
ACTCCATCCAATGGAATATA+CGG 0.365105 3.2:-87220447 None:intergenic
GATATTAAAGTTGAGGATAT+TGG 0.365230 3.2:+87221657 MS.gene072894:CDS
TCCAGTTGAACAAGTCATAA+AGG 0.366172 3.2:+87220194 MS.gene072894:CDS
ATATAATCACTGTCAGGTTC+TGG 0.366661 3.2:-87221975 None:intergenic
CTTTAAGAAAGATGGCTTGA+TGG 0.371228 3.2:+87220701 MS.gene072894:CDS
CAGTTCAAGCAATATTAGAT+TGG 0.371630 3.2:+87221802 MS.gene072894:CDS
TTTAGTCCTTGTGACCAGTT+TGG 0.378654 3.2:-87220324 None:intergenic
GTTCCTGACTTTAAGAAAGA+TGG 0.382115 3.2:+87220693 MS.gene072894:CDS
CATGGCTAGGTGGTGAGAAT+TGG 0.390572 3.2:-87222715 None:intergenic
TAAAATGACAAGTAATCTCT+TGG 0.395875 3.2:-87221897 None:intergenic
TTACTGGTGGCTATATGGTT+TGG 0.403321 3.2:-87222382 None:intergenic
CAAGATGCACATGTTCTAGA+TGG 0.408428 3.2:+87220417 MS.gene072894:CDS
GATGATGAATACATAATCAT+TGG 0.412861 3.2:+87222289 MS.gene072894:CDS
TATGAGCACCTTGGAGATAT+TGG 0.417376 3.2:+87222451 MS.gene072894:CDS
CCAATTAGAGTTGCTCCAAT+GGG 0.419831 3.2:-87220159 None:intergenic
GTTCATGCCAAAATGATGAT+AGG 0.420607 3.2:+87222032 MS.gene072894:CDS
AGAATCTTAGCCTTAGTATC+AGG 0.421693 3.2:-87222667 None:intergenic
CAAGAACAACCATCACTCTT+GGG 0.423882 3.2:+87220601 MS.gene072894:CDS
CGGCTTCTGTTGGATCTTGA+GGG 0.427130 3.2:-87221488 None:intergenic
AAATCCTGGAAGAGCAGTTA+TGG 0.432056 3.2:-87222635 None:intergenic
GCACTTTCAGGTATACCTTC+TGG 0.435666 3.2:-87221777 None:intergenic
ATCTTCAGTGACAACTCCTT+TGG 0.436891 3.2:-87221696 None:intergenic
GCGGCTTCTGTTGGATCTTG+AGG 0.438003 3.2:-87221489 None:intergenic
AAGCCATCTTTCTTAAAGTC+AGG 0.443766 3.2:-87220696 None:intergenic
AGATTGGCAAAGAAGGACTA+TGG 0.445851 3.2:+87221818 MS.gene072894:CDS
CAATATTAGATTGGCAAAGA+AGG 0.446472 3.2:+87221811 MS.gene072894:CDS
GATATTCATTGTAAACTAGA+AGG 0.448111 3.2:+87221267 MS.gene072894:CDS
GTTCCGTATATTCCATTGGA+TGG 0.448817 3.2:+87220444 MS.gene072894:CDS
TTCTAGGTAGTTCATATGGT+TGG 0.454363 3.2:+87221625 MS.gene072894:CDS
GATACACTACAAACTCTTGC+CGG 0.455373 3.2:+87219502 MS.gene072894:CDS
CTTGTTTGGATCTCTAATCA+AGG 0.457534 3.2:-87220574 None:intergenic
GTGACAACTCCTTTGGTATG+AGG 0.458272 3.2:-87221689 None:intergenic
CTTTGAGTATATGTCCCAAT+TGG 0.459345 3.2:-87222542 None:intergenic
ACAAGAACAACCATCACTCT+TGG 0.459719 3.2:+87220600 MS.gene072894:CDS
CCAGTTGAACAAGTCATAAA+GGG 0.460625 3.2:+87220195 MS.gene072894:CDS
CACAACACATCCCATGCAAC+AGG 0.462297 3.2:-87221291 None:intergenic
CGAAACATGCTTGAAGGTAG+TGG 0.463688 3.2:-87221360 None:intergenic
AGAGACAGTGAGATTGCAAT+AGG 0.465168 3.2:+87222349 MS.gene072894:CDS
TGAGGAACTCCTTGAAATCC+TGG 0.466088 3.2:-87220351 None:intergenic
ATATCATGCCATGGCTCTCT+AGG 0.466709 3.2:-87221249 None:intergenic
TTCTGTTCCGTATATTCCAT+TGG 0.467036 3.2:+87220440 MS.gene072894:CDS
ATTGTTAGCAAGATTGAAGC+TGG 0.474341 3.2:+87221717 MS.gene072894:CDS
TCCAATTAGAGTTGCTCCAA+TGG 0.476098 3.2:-87220160 None:intergenic
CTAAAGAGTCCAGGATTTCA+AGG 0.476603 3.2:+87220342 MS.gene072894:CDS
CATTGATCTTTGATTTATGT+TGG 0.476676 3.2:-87222317 None:intergenic
TCAGGAAAACATTCAAATCC+TGG 0.477356 3.2:-87222649 None:intergenic
GTTGAAGCCCTTCAAAGAAA+AGG 0.478206 3.2:+87221861 MS.gene072894:CDS
TCAGGTTCTGGTGCCTCTGT+AGG 0.480853 3.2:-87221963 None:intergenic
AACTGGTTGGTCTGTTTACA+CGG 0.480935 3.2:+87220545 MS.gene072894:CDS
CATCTAGAACATGTGCATCT+TGG 0.481308 3.2:-87220416 None:intergenic
ATGGATTTAGACGTGCACTA+TGG 0.481715 3.2:+87222428 MS.gene072894:CDS
CATTTCACAGATTATTGGGA+TGG 0.486910 3.2:+87219996 MS.gene072894:intron
GAATGATAGGTAGCCCCAAA+TGG 0.490196 3.2:+87220067 MS.gene072894:CDS
GATTTAGACAAAGCAAGAGT+TGG 0.492961 3.2:+87220036 MS.gene072894:CDS
GGCTAGGTGGTGAGAATTGG+AGG 0.496635 3.2:-87222712 None:intergenic
AAAATGACAAGTAATCTCTT+GGG 0.497438 3.2:-87221896 None:intergenic
TATTCACGAAACATGCTTGA+AGG 0.498456 3.2:-87221366 None:intergenic
GTATGTGCCGGGAAAATGTT+GGG 0.500103 3.2:+87220476 MS.gene072894:CDS
TTGTTTAGATCGATCGATGC+TGG 0.502376 3.2:+87221450 MS.gene072894:CDS
GATGGAAGAAGTATAGTTCA+AGG 0.503461 3.2:+87220801 MS.gene072894:CDS
GTGGGATTGATCTTTGTGAT+GGG 0.506802 3.2:+87220931 MS.gene072894:CDS
AGGGCAACATAGTGAATACA+TGG 0.511698 3.2:+87220214 MS.gene072894:CDS
GCTCTAATATAATCACTGTC+AGG 0.514466 3.2:-87221981 None:intergenic
GCTTGATGTGACTATATATG+AGG 0.515858 3.2:+87219477 MS.gene072894:CDS
TTTGACAGTGAATATAATGT+TGG 0.517344 3.2:-87220127 None:intergenic
TGGAGTAGAACGGTATGTGC+CGG 0.519752 3.2:+87220464 MS.gene072894:CDS
CAACATAAATCAAAGATCAA+TGG 0.522850 3.2:+87222318 MS.gene072894:CDS
AACTAGAAGGACCTGTTGCA+TGG 0.522952 3.2:+87221280 MS.gene072894:CDS
GGAGTAGAACGGTATGTGCC+GGG 0.525843 3.2:+87220465 MS.gene072894:CDS
GGTGGGATTGATCTTTGTGA+TGG 0.527896 3.2:+87220930 MS.gene072894:CDS
TTTCATCAACCAAATTTCCC+AGG 0.530381 3.2:+87221014 MS.gene072894:CDS
GGTATACCTTCTGGCCACAT+TGG 0.533593 3.2:-87221768 None:intergenic
CGGCAAATCAAAACAACACA+TGG 0.534970 3.2:+87221418 MS.gene072894:CDS
CTTAAGAAGAAAGCCAATGA+AGG 0.539673 3.2:+87220630 MS.gene072894:CDS
TCTTACCCTCTCGGTTTCCA+AGG 0.540213 3.2:-87221923 None:intergenic
CAAAGATGGGAAAAGCAAGT+TGG 0.540379 3.2:+87221324 MS.gene072894:CDS
GATATACCTCTGGCTTGCAT+TGG 0.543798 3.2:-87219847 None:intergenic
ACTATACTTCTTCCATCACC+AGG 0.545798 3.2:-87220795 None:intergenic
GCAGAGATCGAAATTGCATC+CGG 0.546902 3.2:-87219521 None:intergenic
CTTCCATCACCAGGGTTACG+TGG 0.548889 3.2:-87220786 None:intergenic
ATTTCACAGATTATTGGGAT+GGG 0.555183 3.2:+87219997 MS.gene072894:intron
ACTAGAAGGACCTGTTGCAT+GGG 0.560087 3.2:+87221281 MS.gene072894:CDS
GTCATGTTGCACTTACTACA+CGG 0.562058 3.2:+87219451 None:intergenic
GTGGATCATCGTCCAATACA+AGG 0.562412 3.2:+87220252 MS.gene072894:CDS
AAGGGAACATGCACAAGCGT+GGG 0.570770 3.2:+87219779 MS.gene072894:intron
TTCATATGGTTGGAAATCAT+CGG 0.572489 3.2:+87221635 MS.gene072894:CDS
ACCAGTAATAGACCACCAAA+AGG 0.573701 3.2:+87222397 MS.gene072894:CDS
ATGGGTTAATATATTAGATG+TGG 0.574499 3.2:+87220233 MS.gene072894:CDS
GTCATTCCAATGTGGCCAGA+AGG 0.574690 3.2:+87221762 MS.gene072894:CDS
TACCGTTCTACTCCATCCAA+TGG 0.576822 3.2:-87220456 None:intergenic
GAAAGGTTTCGTTCCATTTG+GGG 0.577281 3.2:-87220080 None:intergenic
TGCTTTGCACCTCATACCAA+AGG 0.582854 3.2:+87221680 MS.gene072894:CDS
TGACAAGTAATCTCTTGGGT+TGG 0.586202 3.2:-87221892 None:intergenic
GTCAAACAAGATAACCCCAT+TGG 0.587028 3.2:+87220144 MS.gene072894:CDS
ATCATCGGATATTAAAGTTG+AGG 0.587336 3.2:+87221650 MS.gene072894:CDS
AAGAAGCTCCCCAAGAGTGA+TGG 0.594868 3.2:-87220610 None:intergenic
TCACAAGGACTAAAGAGTCC+AGG 0.595640 3.2:+87220333 MS.gene072894:CDS
TCGTCGAATAGCGTTTATGT+AGG 0.595975 3.2:-87221568 None:intergenic
CAAGGGAACATGCACAAGCG+TGG 0.596680 3.2:+87219778 MS.gene072894:intron
CAATTTCGATCTCTGCAACA+AGG 0.597917 3.2:+87219528 MS.gene072894:CDS
TGAAAACAAAGGATGTTCCA+TGG 0.602384 3.2:-87220964 None:intergenic
TATTGCCTTGGAAACCGAGA+GGG 0.604275 3.2:+87221918 MS.gene072894:CDS
TGCCCACGTAACCCTGGTGA+TGG 0.604924 3.2:+87220783 MS.gene072894:CDS
GGTATGTGCCGGGAAAATGT+TGG 0.606197 3.2:+87220475 MS.gene072894:CDS
TTTCTCTCCACATGGCTAGG+TGG 0.613613 3.2:-87222725 None:intergenic
GTGAGAATTGTATTTGAACA+TGG 0.616949 3.2:-87220287 None:intergenic
TTACAATGAATATCATGCCA+TGG 0.618761 3.2:-87221258 None:intergenic
ATGTGCAGAGTAAATGTGAA+AGG 0.624116 3.2:-87220097 None:intergenic
ATAAATCAAAGATCAATGGA+TGG 0.626562 3.2:+87222322 MS.gene072894:CDS
TTCCATCACCAGGGTTACGT+GGG 0.629779 3.2:-87220785 None:intergenic
AAGAACAACCATCACTCTTG+GGG 0.634263 3.2:+87220602 MS.gene072894:CDS
GTATTCAAAGTTGAAAACAA+AGG 0.635550 3.2:-87220975 None:intergenic
GCACTATGGTATGAGCACCT+TGG 0.638088 3.2:+87222442 MS.gene072894:CDS
AATGATCCAAACTGGTCACA+AGG 0.638447 3.2:+87220318 MS.gene072894:CDS
CAATTGGGACATATACTCAA+AGG 0.640794 3.2:+87222543 MS.gene072894:CDS
AGGTGGTGAGAATTGGAGGA+AGG 0.643329 3.2:-87222708 None:intergenic
GAATGAATATACTCCTACAG+AGG 0.643986 3.2:+87221950 MS.gene072894:CDS
TCATGTTGCACTTACTACAC+GGG 0.647685 3.2:+87219452 None:intergenic
TTGTATCACCAATATCTCCA+AGG 0.650254 3.2:-87222459 None:intergenic
CTTGTATTGGATAATGCATG+AGG 0.661800 3.2:-87222597 None:intergenic
TCGTGTATCGAATGTTGCCA+CGG 0.661868 3.2:+87221398 MS.gene072894:CDS
CAATTAGAGTTGCTCCAATG+GGG 0.663971 3.2:-87220158 None:intergenic
TTCCATTGGATGGAGTAGAA+CGG 0.671871 3.2:+87220454 MS.gene072894:CDS
GGTGCTTCTATTAACAAAGG+TGG 0.672280 3.2:+87221225 MS.gene072894:intron
ACAGGTGCTTCTATTAACAA+AGG 0.672622 3.2:+87221222 MS.gene072894:intron
AAGTTGCTAGTTCTGCACAA+TGG 0.673752 3.2:+87220880 MS.gene072894:CDS
AGGGAACATGCACAAGCGTG+GGG 0.679420 3.2:+87219780 MS.gene072894:intron
TGATGGGAGATATGATACCA+TGG 0.695563 3.2:+87220947 MS.gene072894:CDS
CTATACTTCTTCCATCACCA+GGG 0.698859 3.2:-87220794 None:intergenic
AAGGTGGTCCTAGAGAGCCA+TGG 0.705923 3.2:+87221241 MS.gene072894:CDS
GGGCAACATAGTGAATACAT+GGG 0.707757 3.2:+87220215 MS.gene072894:CDS
TCAATGCCAATGCAAGCCAG+AGG 0.708442 3.2:+87219841 MS.gene072894:CDS
TTATTGCCTTGGAAACCGAG+AGG 0.718876 3.2:+87221917 MS.gene072894:CDS
TGTACATTGTCATTCCAATG+TGG 0.747438 3.2:+87221754 MS.gene072894:CDS
GATCATCGTCCAATACAAGG+CGG 0.779275 3.2:+87220255 MS.gene072894:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATATAAAATATTCCAAC+AGG + chr3.2:87221204-87221223 MS.gene072894:intron 15.0%
!! AATAAATGTAAAATAGAAAC+AGG - chr3.2:87222081-87222100 None:intergenic 15.0%
!! ACATTCTTTAAACAAAATAA+TGG + chr3.2:87220375-87220394 MS.gene072894:CDS 15.0%
!!! TAATAAATTTTCTTTTGCAA+AGG - chr3.2:87222222-87222241 None:intergenic 15.0%
!! AAAAACATTTCACAGATTAT+TGG + chr3.2:87219991-87220010 MS.gene072894:intron 20.0%
!! AAAACATTTCACAGATTATT+GGG + chr3.2:87219992-87220011 MS.gene072894:intron 20.0%
!! CAATCTACTTAAAATGAAAT+TGG - chr3.2:87219591-87219610 None:intergenic 20.0%
!! TGACAAATTCATTAGAAAAA+AGG - chr3.2:87219658-87219677 None:intergenic 20.0%
!!! ATTGAAAATCAGTATTTTCT+AGG + chr3.2:87221609-87221628 MS.gene072894:CDS 20.0%
! AAAATGACAAGTAATCTCTT+GGG - chr3.2:87221899-87221918 None:intergenic 25.0%
! AGGACTTAATTATGAAATGT+TGG + chr3.2:87221161-87221180 MS.gene072894:intron 25.0%
! ATAAATCAAAGATCAATGGA+TGG + chr3.2:87222322-87222341 MS.gene072894:CDS 25.0%
! ATGTTAAAAATGATCCAAAC+TGG + chr3.2:87220310-87220329 MS.gene072894:CDS 25.0%
! CAACATAAATCAAAGATCAA+TGG + chr3.2:87222318-87222337 MS.gene072894:CDS 25.0%
! CTTTCAAATTTCGTAAACAA+GGG + chr3.2:87219761-87219780 MS.gene072894:intron 25.0%
! GAAACAGGTAATATATATGT+TGG - chr3.2:87222066-87222085 None:intergenic 25.0%
! GATATTAAAGTTGAGGATAT+TGG + chr3.2:87221657-87221676 MS.gene072894:CDS 25.0%
! GATATTCATTGTAAACTAGA+AGG + chr3.2:87221267-87221286 MS.gene072894:CDS 25.0%
! GATGATGAATACATAATCAT+TGG + chr3.2:87222289-87222308 MS.gene072894:CDS 25.0%
! GTATTCAAAGTTGAAAACAA+AGG - chr3.2:87220978-87220997 None:intergenic 25.0%
! TAAAATGACAAGTAATCTCT+TGG - chr3.2:87221900-87221919 None:intergenic 25.0%
! TAATGTTCTTATGCTTGTTT+GGG + chr3.2:87220656-87220675 MS.gene072894:CDS 25.0%
! TACAGATTATATAGTCAACA+AGG - chr3.2:87219892-87219911 None:intergenic 25.0%
! TAGGTGTTAGAATGTATAAA+GGG - chr3.2:87219962-87219981 None:intergenic 25.0%
! TTAATGCAATTCAAACTTTC+TGG - chr3.2:87222499-87222518 None:intergenic 25.0%
! TTAATGTTCTTATGCTTGTT+TGG + chr3.2:87220655-87220674 MS.gene072894:CDS 25.0%
! TTAGGTGTTAGAATGTATAA+AGG - chr3.2:87219963-87219982 None:intergenic 25.0%
! TTTGACAGTGAATATAATGT+TGG - chr3.2:87220130-87220149 None:intergenic 25.0%
!! AATCCATATATTTGTCCTTT+TGG - chr3.2:87222415-87222434 None:intergenic 25.0%
!! ATGGGTTAATATATTAGATG+TGG + chr3.2:87220233-87220252 MS.gene072894:CDS 25.0%
!! CATTGATCTTTGATTTATGT+TGG - chr3.2:87222320-87222339 None:intergenic 25.0%
!! TATTTTCTAGGTAGTTCATA+TGG + chr3.2:87221621-87221640 MS.gene072894:CDS 25.0%
!! TTGTATTTGAACATGGATTT+TGG - chr3.2:87220283-87220302 None:intergenic 25.0%
!!! AAATGTTTTTACATGTCGTT+AGG - chr3.2:87219981-87220000 None:intergenic 25.0%
!!! AAGCATTTTATTTGCATAAC+TGG + chr3.2:87220528-87220547 MS.gene072894:CDS 25.0%
!!! ATTGGAAAGTGTCAATTTAA+TGG - chr3.2:87222184-87222203 None:intergenic 25.0%
!!! ATTTTATTTGCATAACTGGT+TGG + chr3.2:87220532-87220551 MS.gene072894:CDS 25.0%
!!! TTTTGTTTAAAGAATGTGTG+AGG - chr3.2:87220372-87220391 None:intergenic 25.0%
AAGAACATTAACACCTTCAT+TGG - chr3.2:87220646-87220665 None:intergenic 30.0%
AATATGTGAAGATATACCTC+TGG - chr3.2:87219860-87219879 None:intergenic 30.0%
AGGTGTATGTGCTAATTAAT+TGG - chr3.2:87222202-87222221 None:intergenic 30.0%
ATCATCGGATATTAAAGTTG+AGG + chr3.2:87221650-87221669 MS.gene072894:CDS 30.0%
ATTTCACAGATTATTGGGAT+GGG + chr3.2:87219997-87220016 MS.gene072894:intron 30.0%
CAATATTAGATTGGCAAAGA+AGG + chr3.2:87221811-87221830 MS.gene072894:CDS 30.0%
CAGTTCAAGCAATATTAGAT+TGG + chr3.2:87221802-87221821 MS.gene072894:CDS 30.0%
CATCTTGGTAAAGAGTAATT+TGG - chr3.2:87220404-87220423 None:intergenic 30.0%
CCAATACAAGTAACCAATAA+TGG + chr3.2:87222610-87222629 MS.gene072894:CDS 30.0%
GCATGCATATTTACAATCTT+AGG + chr3.2:87221141-87221160 MS.gene072894:intron 30.0%
GCTTTCAAATTTCGTAAACA+AGG + chr3.2:87219760-87219779 MS.gene072894:intron 30.0%
GTGAGAATTGTATTTGAACA+TGG - chr3.2:87220290-87220309 None:intergenic 30.0%
TGTCAACAATTATAGTCTTC+TGG - chr3.2:87220857-87220876 None:intergenic 30.0%
TTACAATGAATATCATGCCA+TGG - chr3.2:87221261-87221280 None:intergenic 30.0%
TTCATATGGTTGGAAATCAT+CGG + chr3.2:87221635-87221654 MS.gene072894:CDS 30.0%
! CCATTATTGGTTACTTGTAT+TGG - chr3.2:87222613-87222632 None:intergenic 30.0%
! TCTGATTCCTTTTCTTTGAA+GGG - chr3.2:87221871-87221890 None:intergenic 30.0%
! TGAATGTTTTCCTGATACTA+AGG + chr3.2:87222657-87222676 MS.gene072894:CDS 30.0%
!! AGAACAATCACAAGTTTTGT+TGG + chr3.2:87220909-87220928 MS.gene072894:CDS 30.0%
!!! TACTTGTCATTTTATTGCCT+TGG + chr3.2:87221906-87221925 MS.gene072894:CDS 30.0%
AAACTAGTTCCAAAATCACC+TGG - chr3.2:87221035-87221054 None:intergenic 35.0%
AACGCAGTTCAAATATCTTC+GGG - chr3.2:87222134-87222153 None:intergenic 35.0%
AACTAGTTCCAAAATCACCT+GGG - chr3.2:87221034-87221053 None:intergenic 35.0%
AAGCCATCTTTCTTAAAGTC+AGG - chr3.2:87220699-87220718 None:intergenic 35.0%
ACAGGTGCTTCTATTAACAA+AGG + chr3.2:87221222-87221241 MS.gene072894:intron 35.0%
ACTCCATCCAATGGAATATA+CGG - chr3.2:87220450-87220469 None:intergenic 35.0%
AGCAGTTATGGTTCCATTAT+TGG - chr3.2:87222626-87222645 None:intergenic 35.0%
ATATAATCACTGTCAGGTTC+TGG - chr3.2:87221978-87221997 None:intergenic 35.0%
ATGTGCAGAGTAAATGTGAA+AGG - chr3.2:87220100-87220119 None:intergenic 35.0%
ATTGTTAGCAAGATTGAAGC+TGG + chr3.2:87221717-87221736 MS.gene072894:CDS 35.0%
CAATTGGGACATATACTCAA+AGG + chr3.2:87222543-87222562 MS.gene072894:CDS 35.0%
CATTTCACAGATTATTGGGA+TGG + chr3.2:87219996-87220015 MS.gene072894:intron 35.0%
CCACCAAAAGGACAAATATA+TGG + chr3.2:87222409-87222428 MS.gene072894:CDS 35.0%
CCAGTTGAACAAGTCATAAA+GGG + chr3.2:87220195-87220214 MS.gene072894:CDS 35.0%
CTTAAGAAGAAAGCCAATGA+AGG + chr3.2:87220630-87220649 MS.gene072894:CDS 35.0%
CTTGTATTGGATAATGCATG+AGG - chr3.2:87222600-87222619 None:intergenic 35.0%
CTTGTTTGGATCTCTAATCA+AGG - chr3.2:87220577-87220596 None:intergenic 35.0%
CTTTGAGTATATGTCCCAAT+TGG - chr3.2:87222545-87222564 None:intergenic 35.0%
GAACGCAGTTCAAATATCTT+CGG - chr3.2:87222135-87222154 None:intergenic 35.0%
GAATGAATATACTCCTACAG+AGG + chr3.2:87221950-87221969 MS.gene072894:CDS 35.0%
GATACTAAGGCTAAGATTCT+AGG + chr3.2:87222670-87222689 MS.gene072894:CDS 35.0%
GATTTAGACAAAGCAAGAGT+TGG + chr3.2:87220036-87220055 MS.gene072894:CDS 35.0%
GCCAAAATGATGATAGGTAA+GGG + chr3.2:87222038-87222057 MS.gene072894:intron 35.0%
GCTCTAATATAATCACTGTC+AGG - chr3.2:87221984-87222003 None:intergenic 35.0%
GCTTGATGTGACTATATATG+AGG + chr3.2:87219477-87219496 MS.gene072894:CDS 35.0%
GTTCATGCCAAAATGATGAT+AGG + chr3.2:87222032-87222051 MS.gene072894:CDS 35.0%
GTTGGAAGAACTAGAATGAT+AGG + chr3.2:87220054-87220073 MS.gene072894:CDS 35.0%
TATTCACGAAACATGCTTGA+AGG - chr3.2:87221369-87221388 None:intergenic 35.0%
TATTTGAACTGCGTTCTTTG+AGG + chr3.2:87222139-87222158 MS.gene072894:intron 35.0%
TCAGGAAAACATTCAAATCC+TGG - chr3.2:87222652-87222671 None:intergenic 35.0%
TCCAGTTGAACAAGTCATAA+AGG + chr3.2:87220194-87220213 MS.gene072894:CDS 35.0%
TGAAAACAAAGGATGTTCCA+TGG - chr3.2:87220967-87220986 None:intergenic 35.0%
TGAAAGGTTTCGTTCCATTT+GGG - chr3.2:87220084-87220103 None:intergenic 35.0%
TGCCAAAATGATGATAGGTA+AGG + chr3.2:87222037-87222056 MS.gene072894:intron 35.0%
TGTACATTGTCATTCCAATG+TGG + chr3.2:87221754-87221773 MS.gene072894:CDS 35.0%
TTCTAGGTAGTTCATATGGT+TGG + chr3.2:87221625-87221644 MS.gene072894:CDS 35.0%
TTCTGTTCCGTATATTCCAT+TGG + chr3.2:87220440-87220459 MS.gene072894:CDS 35.0%
TTGTATCACCAATATCTCCA+AGG - chr3.2:87222462-87222481 None:intergenic 35.0%
TTTCATCAACCAAATTTCCC+AGG + chr3.2:87221014-87221033 MS.gene072894:CDS 35.0%
! CATTCATTTTCTTACCCTCT+CGG - chr3.2:87221935-87221954 None:intergenic 35.0%
! CCATATATTTGTCCTTTTGG+TGG - chr3.2:87222412-87222431 None:intergenic 35.0%
! CTCTGATTCCTTTTCTTTGA+AGG - chr3.2:87221872-87221891 None:intergenic 35.0%
! CTTTAAGAAAGATGGCTTGA+TGG + chr3.2:87220701-87220720 MS.gene072894:CDS 35.0%
! GATGGAAGAAGTATAGTTCA+AGG + chr3.2:87220801-87220820 MS.gene072894:CDS 35.0%
! GTGCAATTTTGAGCAAAGAT+GGG + chr3.2:87221311-87221330 MS.gene072894:CDS 35.0%
! GTTCCTGACTTTAAGAAAGA+TGG + chr3.2:87220693-87220712 MS.gene072894:CDS 35.0%
! TCCCTTACCTATCATCATTT+TGG - chr3.2:87222042-87222061 None:intergenic 35.0%
! TGTGCAATTTTGAGCAAAGA+TGG + chr3.2:87221310-87221329 MS.gene072894:CDS 35.0%
!! AGAATCTTAGCCTTAGTATC+AGG - chr3.2:87222670-87222689 None:intergenic 35.0%
!! CTCTGTGTATTTGCTGATTT+CGG + chr3.2:87219738-87219757 MS.gene072894:intron 35.0%
!! GTTGTTCTTGTTGACTTGTT+TGG - chr3.2:87220591-87220610 None:intergenic 35.0%
!! TTGTTAATAGAAGCACCTGT+TGG - chr3.2:87221222-87221241 None:intergenic 35.0%
!!! ACAATCACAAGTTTTGTTGG+TGG + chr3.2:87220912-87220931 MS.gene072894:CDS 35.0%
!!! AGTAACAAGACCTTTTTCAG+CGG - chr3.2:87221511-87221530 None:intergenic 35.0%
!!! CAATCACAAGTTTTGTTGGT+GGG + chr3.2:87220913-87220932 MS.gene072894:CDS 35.0%
AAATCCTGGAAGAGCAGTTA+TGG - chr3.2:87222638-87222657 None:intergenic 40.0%
AAGAACAACCATCACTCTTG+GGG + chr3.2:87220602-87220621 MS.gene072894:CDS 40.0%
AATGATCCAAACTGGTCACA+AGG + chr3.2:87220318-87220337 MS.gene072894:CDS 40.0%
ACAAGAACAACCATCACTCT+TGG + chr3.2:87220600-87220619 MS.gene072894:CDS 40.0%
ACCAGTAATAGACCACCAAA+AGG + chr3.2:87222397-87222416 MS.gene072894:CDS 40.0%
ACTATACTTCTTCCATCACC+AGG - chr3.2:87220798-87220817 None:intergenic 40.0%
AGAGACAGTGAGATTGCAAT+AGG + chr3.2:87222349-87222368 MS.gene072894:CDS 40.0%
AGATTGGCAAAGAAGGACTA+TGG + chr3.2:87221818-87221837 MS.gene072894:CDS 40.0%
AGGGCAACATAGTGAATACA+TGG + chr3.2:87220214-87220233 MS.gene072894:CDS 40.0%
ATCTTCAGTGACAACTCCTT+TGG - chr3.2:87221699-87221718 None:intergenic 40.0%
ATGGATTTAGACGTGCACTA+TGG + chr3.2:87222428-87222447 MS.gene072894:CDS 40.0%
CAAAGATGGGAAAAGCAAGT+TGG + chr3.2:87221324-87221343 MS.gene072894:CDS 40.0%
CAAGAACAACCATCACTCTT+GGG + chr3.2:87220601-87220620 MS.gene072894:CDS 40.0%
CAATTAGAGTTGCTCCAATG+GGG - chr3.2:87220161-87220180 None:intergenic 40.0%
CAATTTCGATCTCTGCAACA+AGG + chr3.2:87219528-87219547 MS.gene072894:CDS 40.0%
CCAAAATCACCTGGGAAATT+TGG - chr3.2:87221026-87221045 None:intergenic 40.0%
CCAATTAGAGTTGCTCCAAT+GGG - chr3.2:87220162-87220181 None:intergenic 40.0%
CGAAATCAGCAAATACACAG+AGG - chr3.2:87219740-87219759 None:intergenic 40.0%
CGGCAAATCAAAACAACACA+TGG + chr3.2:87221418-87221437 MS.gene072894:CDS 40.0%
CTAAAGAGTCCAGGATTTCA+AGG + chr3.2:87220342-87220361 MS.gene072894:CDS 40.0%
CTATACTTCTTCCATCACCA+GGG - chr3.2:87220797-87220816 None:intergenic 40.0%
GAAAGGTTTCGTTCCATTTG+GGG - chr3.2:87220083-87220102 None:intergenic 40.0%
GATACACTACAAACTCTTGC+CGG + chr3.2:87219502-87219521 MS.gene072894:CDS 40.0%
GGGCAACATAGTGAATACAT+GGG + chr3.2:87220215-87220234 MS.gene072894:CDS 40.0%
GGTGCTTCTATTAACAAAGG+TGG + chr3.2:87221225-87221244 MS.gene072894:intron 40.0%
GTCAAACAAGATAACCCCAT+TGG + chr3.2:87220144-87220163 MS.gene072894:CDS 40.0%
GTCTATTACTGGTGGCTATA+TGG - chr3.2:87222390-87222409 None:intergenic 40.0%
GTGAAAGGTTTCGTTCCATT+TGG - chr3.2:87220085-87220104 None:intergenic 40.0%
GTGGGATTGATCTTTGTGAT+GGG + chr3.2:87220931-87220950 MS.gene072894:CDS 40.0%
GTTCCGTATATTCCATTGGA+TGG + chr3.2:87220444-87220463 MS.gene072894:CDS 40.0%
GTTGAAGCCCTTCAAAGAAA+AGG + chr3.2:87221861-87221880 MS.gene072894:CDS 40.0%
TATGAGCACCTTGGAGATAT+TGG + chr3.2:87222451-87222470 MS.gene072894:CDS 40.0%
TCCAATTAGAGTTGCTCCAA+TGG - chr3.2:87220163-87220182 None:intergenic 40.0%
TCGTCGAATAGCGTTTATGT+AGG - chr3.2:87221571-87221590 None:intergenic 40.0%
TGACAAGTAATCTCTTGGGT+TGG - chr3.2:87221895-87221914 None:intergenic 40.0%
TGATGGGAGATATGATACCA+TGG + chr3.2:87220947-87220966 MS.gene072894:CDS 40.0%
TTACTGGTGGCTATATGGTT+TGG - chr3.2:87222385-87222404 None:intergenic 40.0%
TTCCATTGGATGGAGTAGAA+CGG + chr3.2:87220454-87220473 MS.gene072894:CDS 40.0%
TTGTTTAGATCGATCGATGC+TGG + chr3.2:87221450-87221469 MS.gene072894:CDS 40.0%
TTTAGTCCTTGTGACCAGTT+TGG - chr3.2:87220327-87220346 None:intergenic 40.0%
! ATCGTTTTGCTGAGACCAAT+TGG + chr3.2:87222527-87222546 MS.gene072894:CDS 40.0%
! CAAGATGCACATGTTCTAGA+TGG + chr3.2:87220417-87220436 MS.gene072894:CDS 40.0%
! CATCTAGAACATGTGCATCT+TGG - chr3.2:87220419-87220438 None:intergenic 40.0%
! CCAAATTTCCCAGGTGATTT+TGG + chr3.2:87221023-87221042 MS.gene072894:intron 40.0%
! GTATCTTCCCAACATTTTCC+CGG - chr3.2:87220486-87220505 None:intergenic 40.0%
! TCGTTTTGCTGAGACCAATT+GGG + chr3.2:87222528-87222547 MS.gene072894:CDS 40.0%
!! AACTGGTTGGTCTGTTTACA+CGG + chr3.2:87220545-87220564 MS.gene072894:CDS 40.0%
!! AAGTTGCTAGTTCTGCACAA+TGG + chr3.2:87220880-87220899 MS.gene072894:CDS 40.0%
!! CCCTTTATGACTTGTTCAAC+TGG - chr3.2:87220198-87220217 None:intergenic 40.0%
!! GCTGAAAAAGGTCTTGTTAC+TGG + chr3.2:87221510-87221529 MS.gene072894:CDS 40.0%
!! TCCTTTTGGTGGTCTATTAC+TGG - chr3.2:87222401-87222420 None:intergenic 40.0%
!! TTTTGGTGGTCTATTACTGG+TGG - chr3.2:87222398-87222417 None:intergenic 40.0%
!!! ATTTTGGAACCGCCTTGTAT+TGG - chr3.2:87220267-87220286 None:intergenic 40.0%
!!! TGTGTTGTTTTGATTTGCCG+TGG - chr3.2:87221418-87221437 None:intergenic 40.0%
AACTAGAAGGACCTGTTGCA+TGG + chr3.2:87221280-87221299 MS.gene072894:CDS 45.0%
ACTAGAAGGACCTGTTGCAT+GGG + chr3.2:87221281-87221300 MS.gene072894:CDS 45.0%
ATATCATGCCATGGCTCTCT+AGG - chr3.2:87221252-87221271 None:intergenic 45.0%
CCCATTGGAGCAACTCTAAT+TGG + chr3.2:87220159-87220178 MS.gene072894:CDS 45.0%
CGAAACATGCTTGAAGGTAG+TGG - chr3.2:87221363-87221382 None:intergenic 45.0%
GAATGATAGGTAGCCCCAAA+TGG + chr3.2:87220067-87220086 MS.gene072894:CDS 45.0%
GATCATCGTCCAATACAAGG+CGG + chr3.2:87220255-87220274 MS.gene072894:CDS 45.0%
GCAGAGATCGAAATTGCATC+CGG - chr3.2:87219524-87219543 None:intergenic 45.0%
GGTGGGATTGATCTTTGTGA+TGG + chr3.2:87220930-87220949 MS.gene072894:CDS 45.0%
GTATGTGCCGGGAAAATGTT+GGG + chr3.2:87220476-87220495 MS.gene072894:CDS 45.0%
GTGACAACTCCTTTGGTATG+AGG - chr3.2:87221692-87221711 None:intergenic 45.0%
GTGGATCATCGTCCAATACA+AGG + chr3.2:87220252-87220271 MS.gene072894:CDS 45.0%
TACCGTTCTACTCCATCCAA+TGG - chr3.2:87220459-87220478 None:intergenic 45.0%
TATTGCCTTGGAAACCGAGA+GGG + chr3.2:87221918-87221937 MS.gene072894:CDS 45.0%
TCACAAGGACTAAAGAGTCC+AGG + chr3.2:87220333-87220352 MS.gene072894:CDS 45.0%
TCGTGTATCGAATGTTGCCA+CGG + chr3.2:87221398-87221417 MS.gene072894:CDS 45.0%
TGAGGAACTCCTTGAAATCC+TGG - chr3.2:87220354-87220373 None:intergenic 45.0%
TGCTTTGCACCTCATACCAA+AGG + chr3.2:87221680-87221699 MS.gene072894:CDS 45.0%
TTATTGCCTTGGAAACCGAG+AGG + chr3.2:87221917-87221936 MS.gene072894:CDS 45.0%
! GATATACCTCTGGCTTGCAT+TGG - chr3.2:87219850-87219869 None:intergenic 45.0%
! GCACTTTCAGGTATACCTTC+TGG - chr3.2:87221780-87221799 None:intergenic 45.0%
! GCTTGAACTGAAGCACTTTC+AGG - chr3.2:87221792-87221811 None:intergenic 45.0%
!! TGGAGGAAGGTACTCAGATT+TGG - chr3.2:87222698-87222717 None:intergenic 45.0%
AAGAAGCTCCCCAAGAGTGA+TGG - chr3.2:87220613-87220632 None:intergenic 50.0%
AAGGGAACATGCACAAGCGT+GGG + chr3.2:87219779-87219798 MS.gene072894:intron 50.0%
AGGTGGTGAGAATTGGAGGA+AGG - chr3.2:87222711-87222730 None:intergenic 50.0%
CACAACACATCCCATGCAAC+AGG - chr3.2:87221294-87221313 None:intergenic 50.0%
CCAACAGAAGCCGCTGAAAA+AGG + chr3.2:87221498-87221517 MS.gene072894:CDS 50.0%
CGGCTTCTGTTGGATCTTGA+GGG - chr3.2:87221491-87221510 None:intergenic 50.0%
GCACTATGGTATGAGCACCT+TGG + chr3.2:87222442-87222461 MS.gene072894:CDS 50.0%
GGAACCATAACTGCTCTTCC+AGG + chr3.2:87222631-87222650 MS.gene072894:CDS 50.0%
GGTATACCTTCTGGCCACAT+TGG - chr3.2:87221771-87221790 None:intergenic 50.0%
GGTATGTGCCGGGAAAATGT+TGG + chr3.2:87220475-87220494 MS.gene072894:CDS 50.0%
GTCATTCCAATGTGGCCAGA+AGG + chr3.2:87221762-87221781 MS.gene072894:CDS 50.0%
TCAATGCCAATGCAAGCCAG+AGG + chr3.2:87219841-87219860 MS.gene072894:CDS 50.0%
TCTTACCCTCTCGGTTTCCA+AGG - chr3.2:87221926-87221945 None:intergenic 50.0%
TGGAGTAGAACGGTATGTGC+CGG + chr3.2:87220464-87220483 MS.gene072894:CDS 50.0%
TTCCATCACCAGGGTTACGT+GGG - chr3.2:87220788-87220807 None:intergenic 50.0%
!!! CCTTTTTCAGCGGCTTCTGT+TGG - chr3.2:87221501-87221520 None:intergenic 50.0%
AAGGTGGTCCTAGAGAGCCA+TGG + chr3.2:87221241-87221260 MS.gene072894:CDS 55.0%
AGGGAACATGCACAAGCGTG+GGG + chr3.2:87219780-87219799 MS.gene072894:intron 55.0%
CAAGGGAACATGCACAAGCG+TGG + chr3.2:87219778-87219797 MS.gene072894:intron 55.0%
CTTCCATCACCAGGGTTACG+TGG - chr3.2:87220789-87220808 None:intergenic 55.0%
GCGGCTTCTGTTGGATCTTG+AGG - chr3.2:87221492-87221511 None:intergenic 55.0%
GGAGTAGAACGGTATGTGCC+GGG + chr3.2:87220465-87220484 MS.gene072894:CDS 55.0%
! GTTTTGTGCCCACGTAACCC+TGG + chr3.2:87220777-87220796 MS.gene072894:CDS 55.0%
! TCAGGTTCTGGTGCCTCTGT+AGG - chr3.2:87221966-87221985 None:intergenic 55.0%
!! ATCGATGCTGGTGCTGCTTC+TGG + chr3.2:87221462-87221481 MS.gene072894:CDS 55.0%
TGCCCACGTAACCCTGGTGA+TGG + chr3.2:87220783-87220802 MS.gene072894:CDS 60.0%


Chromosome Type Strat End Strand Name
chr3.2 gene 87219454 87222732 87219454 ID=MS.gene072894
chr3.2 mRNA 87219454 87222732 87219454 ID=MS.gene072894.t1;Parent=MS.gene072894
chr3.2 exon 87219454 87219549 87219454 ID=MS.gene072894.t1.exon1;Parent=MS.gene072894.t1
chr3.2 CDS 87219454 87219549 87219454 ID=cds.MS.gene072894.t1;Parent=MS.gene072894.t1
chr3.2 exon 87219782 87219862 87219782 ID=MS.gene072894.t1.exon2;Parent=MS.gene072894.t1
chr3.2 CDS 87219782 87219862 87219782 ID=cds.MS.gene072894.t1;Parent=MS.gene072894.t1
chr3.2 exon 87220006 87221035 87220006 ID=MS.gene072894.t1.exon3;Parent=MS.gene072894.t1
chr3.2 CDS 87220006 87221035 87220006 ID=cds.MS.gene072894.t1;Parent=MS.gene072894.t1
chr3.2 exon 87221226 87222053 87221226 ID=MS.gene072894.t1.exon4;Parent=MS.gene072894.t1
chr3.2 CDS 87221226 87222053 87221226 ID=cds.MS.gene072894.t1;Parent=MS.gene072894.t1
chr3.2 exon 87222287 87222732 87222287 ID=MS.gene072894.t1.exon5;Parent=MS.gene072894.t1
chr3.2 CDS 87222287 87222732 87222287 ID=cds.MS.gene072894.t1;Parent=MS.gene072894.t1
Gene Sequence

>MS.gene072894

ATGTTGCACTTACTACACGGGAAGCTTGATGTGACTATATATGAGGTCGATACACTACAAACTCTTGCCGGATGCAATTTCGATCTCTGCAACAAGGTGCTCTTAATCACAATACTGTCTCTATGTTAATCTTTCCAATTTCATTTTAAGTAGATTGACTAAAGCTTCTCAATTTAAAAATTGTATCATATTTATTAAAATCCTTTTTTCTAATGAATTTGTCATCACATAAAATGTACTTATATTTTTGTACATGTCAAATTTAAATTGCATTATAGTATAGCCTCTGTGTATTTGCTGATTTCGGCTTTCAAATTTCGTAAACAAGGGAACATGCACAAGCGTGGGGAAGAAAATTCTGTCACAAGTCAAGAGTTGTTTTCTATGTCAATGCCAATGCAAGCCAGAGGTATATCTTCACATATTAATTTATTTCCTTGTTGACTATATAATCTGTAATGTAATTATGTAACATACTTCATTATTTTTCTAATCACATAAAGTTCCCTTTATACATTCTAACACCTAACGACATGTAAAAACATTTCACAGATTATTGGGATGGGTCTATATGCAACAGTTGATTTAGACAAAGCAAGAGTTGGAAGAACTAGAATGATAGGTAGCCCCAAATGGAACGAAACCTTTCACATTTACTCTGCACATTCAATCTCCAACATTATATTCACTGTCAAACAAGATAACCCCATTGGAGCAACTCTAATTGGAAGAGCTTATGTTCCAGTTGAACAAGTCATAAAGGGCAACATAGTGAATACATGGGTTAATATATTAGATGTGGATCATCGTCCAATACAAGGCGGTTCCAAAATCCATGTTCAAATACAATTCTCACATGTTAAAAATGATCCAAACTGGTCACAAGGACTAAAGAGTCCAGGATTTCAAGGAGTTCCTCACACATTCTTTAAACAAAATAATGGTTGCCAAATTACTCTTTACCAAGATGCACATGTTCTAGATGGTTCTGTTCCGTATATTCCATTGGATGGAGTAGAACGGTATGTGCCGGGAAAATGTTGGGAAGATACTTACAATGCAATTAATGATGCTAAGCATTTTATTTGCATAACTGGTTGGTCTGTTTACACGGAAATAACCTTGATTAGAGATCCAAACAAGTCAACAAGAACAACCATCACTCTTGGGGAGCTTCTTAAGAAGAAAGCCAATGAAGGTGTTAATGTTCTTATGCTTGTTTGGGATGACAGAACTTCTGTTCCTGACTTTAAGAAAGATGGCTTGATGGCAACTCATGATCAAGAAATAGCAGAGTATTTTAGAAACACAAATGTGCATTGTGTTTTGTGCCCACGTAACCCTGGTGATGGAAGAAGTATAGTTCAAGGTTTTGAAATTTCAACTATGTTTACTCATCACCAGAAGACTATAATTGTTGACAGCAAAGTTGCTAGTTCTGCACAATGGAAGAAGAGAACAATCACAAGTTTTGTTGGTGGGATTGATCTTTGTGATGGGAGATATGATACCATGGAACATCCTTTGTTTTCAACTTTGAATACAATTCATCATGATGATTTTCATCAACCAAATTTCCCAGGTGATTTTGGAACTAGTTTTATAATTAATCACTTAAAAGACATGTTTGATACATAGATATAATATTACAATCATATATTAGTGTAGAAGTCAAATAAACATATGAGCATGCATATTTACAATCTTAGGACTTAATTATGAAATGTTGGTTTATCAAATATAATTAAATAAAATATAAAATATTCCAACAGGTGCTTCTATTAACAAAGGTGGTCCTAGAGAGCCATGGCATGATATTCATTGTAAACTAGAAGGACCTGTTGCATGGGATGTGTTGTGCAATTTTGAGCAAAGATGGGAAAAGCAAGTTGGAAAGCAATTAATTCCACTACCTTCAAGCATGTTTCGTGAATATGATATTGCTCGTGTATCGAATGTTGCCACGGCAAATCAAAACAACACATGGAATGTTCAATTGTTTAGATCGATCGATGCTGGTGCTGCTTCTGGCTTCCCTCAAGATCCAACAGAAGCCGCTGAAAAAGGTCTTGTTACTGGAAAAGATAACATCATTGATAGAAGCATTCAAGATGCCTACATAAACGCTATTCGACGAGCTAAGAACTTCGTCTACATTGAAAATCAGTATTTTCTAGGTAGTTCATATGGTTGGAAATCATCGGATATTAAAGTTGAGGATATTGGTGCTTTGCACCTCATACCAAAGGAGTTGTCACTGAAGATTGTTAGCAAGATTGAAGCTGGAGAGAGATTCTCTGTGTACATTGTCATTCCAATGTGGCCAGAAGGTATACCTGAAAGTGCTTCAGTTCAAGCAATATTAGATTGGCAAAGAAGGACTATGGAGATGATGTATTCTGACATAGTTGAAGCCCTTCAAAGAAAAGGAATCAGAGCCAACCCAAGAGATTACTTGTCATTTTATTGCCTTGGAAACCGAGAGGGTAAGAAAATGAATGAATATACTCCTACAGAGGCACCAGAACCTGACAGTGATTATATTAGAGCACAAAATTCTAGAAGATTCATGATATATGTTCATGCCAAAATGATGATAGGTAAGGGATCCAACATATATATTACCTGTTTCTATTTTACATTTATTAGTGACACTGCTAACTATTTTACAACTGTTCCCGAAGATATTTGAACTGCGTTCTTTGAGGTTACATGATCAAATTCTTACCATTAAATTGACACTTTCCAATTAATTAGCACATACACCTTTGCAAAAGAAAATTTATTAACACATTCTTGTGACTTTTTTTTTTTTTTTTGCTTCTTCATTCAGTTGATGATGAATACATAATCATTGGTTCTGCCAACATAAATCAAAGATCAATGGATGGTGCTAGAGACAGTGAGATTGCAATAGGTGCATTTCAACCAAACCATATAGCCACCAGTAATAGACCACCAAAAGGACAAATATATGGATTTAGACGTGCACTATGGTATGAGCACCTTGGAGATATTGGTGATACAAGCTTCTTTGAAAATCCAGAAAGTTTGAATTGCATTAAGCTTGTAAATCGTTTTGCTGAGACCAATTGGGACATATACTCAAAGGATGCATTTGATGAATACAGATCATTTCATCACCTCATGCATTATCCAATACAAGTAACCAATAATGGAACCATAACTGCTCTTCCAGGATTTGAATGTTTTCCTGATACTAAGGCTAAGATTCTAGGTTCCAAATCTGAGTACCTTCCTCCAATTCTCACCACCTAG
Protein sequence

>MS.gene072894.t1

MLHLLHGKLDVTIYEVDTLQTLAGCNFDLCNKGTCTSVGKKILSQVKSCFLCQCQCKPEIIGMGLYATVDLDKARVGRTRMIGSPKWNETFHIYSAHSISNIIFTVKQDNPIGATLIGRAYVPVEQVIKGNIVNTWVNILDVDHRPIQGGSKIHVQIQFSHVKNDPNWSQGLKSPGFQGVPHTFFKQNNGCQITLYQDAHVLDGSVPYIPLDGVERYVPGKCWEDTYNAINDAKHFICITGWSVYTEITLIRDPNKSTRTTITLGELLKKKANEGVNVLMLVWDDRTSVPDFKKDGLMATHDQEIAEYFRNTNVHCVLCPRNPGDGRSIVQGFEISTMFTHHQKTIIVDSKVASSAQWKKRTITSFVGGIDLCDGRYDTMEHPLFSTLNTIHHDDFHQPNFPGASINKGGPREPWHDIHCKLEGPVAWDVLCNFEQRWEKQVGKQLIPLPSSMFREYDIARVSNVATANQNNTWNVQLFRSIDAGAASGFPQDPTEAAEKGLVTGKDNIIDRSIQDAYINAIRRAKNFVYIENQYFLGSSYGWKSSDIKVEDIGALHLIPKELSLKIVSKIEAGERFSVYIVIPMWPEGIPESASVQAILDWQRRTMEMMYSDIVEALQRKGIRANPRDYLSFYCLGNREGKKMNEYTPTEAPEPDSDYIRAQNSRRFMIYVHAKMMIVDDEYIIIGSANINQRSMDGARDSEIAIGAFQPNHIATSNRPPKGQIYGFRRALWYEHLGDIGDTSFFENPESLNCIKLVNRFAETNWDIYSKDAFDEYRSFHHLMHYPIQVTNNGTITALPGFECFPDTKAKILGSKSEYLPPILTT