Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07293.t1 | XP_003591397.1 | 96.9 | 327 | 10 | 0 | 1 | 327 | 1 | 327 | 6.20E-181 | 643.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07293.t1 | G7ICX7 | 96.9 | 327 | 10 | 0 | 1 | 327 | 1 | 327 | 4.5e-181 | 643.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene053144 | MS.gene07293 | 0.814915 | 1.21E-51 | -1.69E-46 |
| MS.gene060519 | MS.gene07293 | 0.801933 | 7.13E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07293.t1 | MTR_1g086990 | 96.942 | 327 | 10 | 0 | 1 | 327 | 1 | 327 | 0.0 | 651 |
| MS.gene07293.t1 | MTR_3g096580 | 92.135 | 89 | 7 | 0 | 239 | 327 | 9 | 97 | 2.41e-51 | 166 |
| MS.gene07293.t1 | MTR_3g096562 | 91.860 | 86 | 7 | 0 | 242 | 327 | 62 | 147 | 8.67e-47 | 162 |
| MS.gene07293.t1 | MTR_7g020840 | 32.616 | 279 | 168 | 10 | 37 | 307 | 35 | 301 | 1.15e-30 | 119 |
| MS.gene07293.t1 | MTR_1g030760 | 32.215 | 298 | 178 | 10 | 15 | 302 | 14 | 297 | 1.83e-28 | 113 |
| MS.gene07293.t1 | MTR_6g021910 | 33.333 | 279 | 162 | 11 | 37 | 302 | 34 | 301 | 4.71e-27 | 110 |
| MS.gene07293.t1 | MTR_3g070770 | 29.893 | 281 | 166 | 11 | 55 | 307 | 6 | 283 | 3.36e-24 | 101 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07293.t1 | AT2G16760 | 64.939 | 328 | 104 | 8 | 6 | 327 | 5 | 327 | 3.86e-142 | 405 |
| MS.gene07293.t1 | AT2G47370 | 60.597 | 335 | 119 | 8 | 1 | 327 | 1 | 330 | 2.64e-134 | 385 |
| MS.gene07293.t1 | AT2G47370 | 59.286 | 280 | 103 | 6 | 1 | 273 | 1 | 276 | 3.40e-108 | 317 |
| MS.gene07293.t1 | AT5G28660 | 46.377 | 207 | 66 | 4 | 67 | 273 | 5 | 166 | 1.09e-45 | 153 |
| MS.gene07293.t1 | AT2G01410 | 30.032 | 313 | 184 | 12 | 4 | 300 | 15 | 308 | 8.04e-25 | 103 |
Find 81 sgRNAs with CRISPR-Local
Find 195 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCTTTCTTACTCAACTTTC+TGG | 0.113429 | 1.4:-69334478 | MS.gene07293:CDS |
| AAAACATTGGTTGGCCTTAA+TGG | 0.152759 | 1.4:-69332102 | MS.gene07293:CDS |
| AAGAGAATGGCGAGGAATTT+TGG | 0.197496 | 1.4:+69334868 | None:intergenic |
| CCAGCAACCACAACCTTATT+AGG | 0.208425 | 1.4:+69331928 | None:intergenic |
| ATTGGAGGGCCACTTTATTT+TGG | 0.228396 | 1.4:-69331973 | MS.gene07293:CDS |
| GTGAAGATAATTAAGGTTAT+TGG | 0.247604 | 1.4:-69331991 | MS.gene07293:CDS |
| CCTAATAAGGTTGTGGTTGC+TGG | 0.247906 | 1.4:-69331928 | MS.gene07293:CDS |
| CATCCCCAACGACGCATTTC+CGG | 0.257835 | 1.4:+69334603 | None:intergenic |
| AGATTAGTGGAGAGTTTAGA+TGG | 0.265703 | 1.4:-69331892 | MS.gene07293:CDS |
| AGAGTTATTGTCTCCTAATA+AGG | 0.268390 | 1.4:-69331941 | MS.gene07293:CDS |
| CCGGAGTAGGAATCGGATTC+TGG | 0.291646 | 1.4:-69334572 | MS.gene07293:CDS |
| GTGGTTGCTGGAAATCCTTC+AGG | 0.294870 | 1.4:-69331916 | MS.gene07293:CDS |
| CAAGTAAAATATGGAAAGTT+GGG | 0.299945 | 1.4:-69332185 | MS.gene07293:CDS |
| CAATTCCAACCATATGGTTT+AGG | 0.317125 | 1.4:+69331782 | None:intergenic |
| ATGTAAAAGCAAGTAAAATA+TGG | 0.332923 | 1.4:-69332194 | MS.gene07293:CDS |
| AGAGGAAGTGAAGATAATTA+AGG | 0.344563 | 1.4:-69331998 | MS.gene07293:CDS |
| CTAAACCATATGGTTGGAAT+TGG | 0.352983 | 1.4:-69331781 | MS.gene07293:CDS |
| TTGGCCGGAAATGCGTCGTT+GGG | 0.356790 | 1.4:-69334607 | MS.gene07293:CDS |
| TCGGTTGTTGCAAAATTCTC+AGG | 0.364403 | 1.4:-69331856 | MS.gene07293:CDS |
| GCAAGTAAAATATGGAAAGT+TGG | 0.367402 | 1.4:-69332186 | MS.gene07293:CDS |
| GGTGGTAAACAATTCCATTA+AGG | 0.371380 | 1.4:+69332088 | None:intergenic |
| CTCAGGGCCTAAACATCGTT+TGG | 0.372687 | 1.4:-69331839 | MS.gene07293:CDS |
| ATATGGAAAGTTGGGGTTGA+TGG | 0.388063 | 1.4:-69332177 | MS.gene07293:CDS |
| GGTATCCAATTCCAACCATA+TGG | 0.404384 | 1.4:+69331776 | None:intergenic |
| ATTACTATTAAGAATCCATC+TGG | 0.406971 | 1.4:+69332066 | None:intergenic |
| TATGGAAAGTTGGGGTTGAT+GGG | 0.450804 | 1.4:-69332176 | MS.gene07293:CDS |
| CGATTGACCGGAGTAGGAAT+CGG | 0.459191 | 1.4:-69334579 | MS.gene07293:CDS |
| TAGTGGAGAGTTTAGATGGA+TGG | 0.469672 | 1.4:-69331888 | MS.gene07293:CDS |
| TCTTCCAATACTGTTCCCTC+TGG | 0.482175 | 1.4:+69334655 | None:intergenic |
| AGATGGATGGAATACAGCTT+CGG | 0.484091 | 1.4:-69331875 | MS.gene07293:CDS |
| ATCACCAGAGGGAACAGTAT+TGG | 0.485188 | 1.4:-69334659 | MS.gene07293:CDS |
| GTTGTAAACGCTGATGTTAG+AGG | 0.486804 | 1.4:-69334550 | MS.gene07293:CDS |
| AAATCCTTCAGGGAGATTAG+TGG | 0.494271 | 1.4:-69331905 | MS.gene07293:CDS |
| GTTGGCCGGAAATGCGTCGT+TGG | 0.505279 | 1.4:-69334608 | MS.gene07293:CDS |
| AATCCATCTCCAAAATAAAG+TGG | 0.505424 | 1.4:+69331964 | None:intergenic |
| CGGTTGTTGCAAAATTCTCA+GGG | 0.508725 | 1.4:-69331855 | MS.gene07293:CDS |
| CACTATTCACTCCAAAAGAA+TGG | 0.508816 | 1.4:-69332128 | MS.gene07293:CDS |
| GATTGATTTAACACAGGGAG+AGG | 0.526887 | 1.4:-69332016 | MS.gene07293:CDS |
| GAAAGTGTACCTAAACCATA+TGG | 0.527065 | 1.4:-69331791 | MS.gene07293:CDS |
| AAGATAATTAAGGTTATTGG+AGG | 0.528555 | 1.4:-69331988 | MS.gene07293:CDS |
| GATGATTATGCCGATGGGTA+TGG | 0.529205 | 1.4:+69334834 | None:intergenic |
| TGGTTGCTGGAAATCCTTCA+GGG | 0.530888 | 1.4:-69331915 | MS.gene07293:CDS |
| CTGAAAGAAACGGAGTTGGC+CGG | 0.532209 | 1.4:-69334622 | MS.gene07293:CDS |
| TTTCAGAGAATGTGCAAAGT+GGG | 0.535552 | 1.4:-69334755 | MS.gene07293:CDS |
| AAGAGAGATGATTATGCCGA+TGG | 0.536931 | 1.4:+69334828 | None:intergenic |
| GGAATTGTTTACCACCCAGA+TGG | 0.538287 | 1.4:-69332081 | MS.gene07293:CDS |
| TAGTGATAGACGTGAGTTGA+GGG | 0.540159 | 1.4:+69334793 | None:intergenic |
| ATTGTCTCCTAATAAGGTTG+TGG | 0.545717 | 1.4:-69331935 | MS.gene07293:CDS |
| CCAGAATCCGATTCCTACTC+CGG | 0.552410 | 1.4:+69334572 | None:intergenic |
| AGTGACTGTTCTGAAAGAAA+CGG | 0.554947 | 1.4:-69334632 | MS.gene07293:CDS |
| CAGAAAGTTGAGTAAGAAAG+AGG | 0.557479 | 1.4:+69334479 | None:intergenic |
| GAATGGCACAAAACATTGGT+TGG | 0.557627 | 1.4:-69332111 | MS.gene07293:CDS |
| AACTGCAACATCGTCTGCAA+AGG | 0.560005 | 1.4:+69332245 | None:intergenic |
| GATGTAGCCAAACGATGTTT+AGG | 0.562054 | 1.4:+69331832 | None:intergenic |
| AAAAGAATGGCACAAAACAT+TGG | 0.562268 | 1.4:-69332115 | MS.gene07293:CDS |
| GGCTGTGAAGAGGAAGAGAA+TGG | 0.566959 | 1.4:+69334855 | None:intergenic |
| CTCTCCACTAATCTCCCTGA+AGG | 0.567971 | 1.4:+69331901 | None:intergenic |
| GTTCAAGATTGATTTAACAC+AGG | 0.568807 | 1.4:-69332022 | MS.gene07293:CDS |
| ACATCAGCTACTGTGAAGGA+TGG | 0.570230 | 1.4:-69331814 | MS.gene07293:CDS |
| CTCTTCACAGCCATACCCAT+CGG | 0.579141 | 1.4:-69334844 | MS.gene07293:CDS |
| TTCAAGATTGATTTAACACA+GGG | 0.581645 | 1.4:-69332021 | MS.gene07293:CDS |
| CATCAGCTACTGTGAAGGAT+GGG | 0.589586 | 1.4:-69331813 | MS.gene07293:CDS |
| CGTTGGGGATGACGATTGAC+CGG | 0.594121 | 1.4:-69334591 | MS.gene07293:CDS |
| GTGTACCTAAACCATATGGT+TGG | 0.595572 | 1.4:-69331787 | MS.gene07293:CDS |
| AATCGGTCAAATTTCCGTAC+CGG | 0.599124 | 1.4:-69334689 | MS.gene07293:CDS |
| AAAGAAGCATGCTATTGTTG+AGG | 0.609816 | 1.4:-69331749 | MS.gene07293:CDS |
| TGTTCTGAAAGAAACGGAGT+TGG | 0.613305 | 1.4:-69334626 | MS.gene07293:CDS |
| GTCTATCACTATCACAGCAA+AGG | 0.614577 | 1.4:-69334781 | MS.gene07293:CDS |
| GGCTACATCAGCTACTGTGA+AGG | 0.617487 | 1.4:-69331818 | MS.gene07293:CDS |
| AAGTAAAATATGGAAAGTTG+GGG | 0.624724 | 1.4:-69332184 | MS.gene07293:CDS |
| AGAGAGATGATTATGCCGAT+GGG | 0.637293 | 1.4:+69334829 | None:intergenic |
| TGGCCGGAAATGCGTCGTTG+GGG | 0.638022 | 1.4:-69334606 | MS.gene07293:CDS |
| GGATGACGATTGACCGGAGT+AGG | 0.649044 | 1.4:-69334585 | MS.gene07293:CDS |
| TTACTATTAAGAATCCATCT+GGG | 0.651021 | 1.4:+69332067 | None:intergenic |
| GATGTTGCAGTTGATGCAGA+AGG | 0.659638 | 1.4:-69332234 | MS.gene07293:CDS |
| CGATGGGTATGGCTGTGAAG+AGG | 0.679741 | 1.4:+69334845 | None:intergenic |
| AGATAATTAAGGTTATTGGA+GGG | 0.679870 | 1.4:-69331987 | MS.gene07293:CDS |
| TGAAGAGGAAGAGAATGGCG+AGG | 0.681971 | 1.4:+69334860 | None:intergenic |
| ATAGTGATAGACGTGAGTTG+AGG | 0.689700 | 1.4:+69334792 | None:intergenic |
| CTATTAAGAATCCATCTGGG+TGG | 0.712337 | 1.4:+69332070 | None:intergenic |
| TTGCTTATGATCTTTCTACG+TGG | 0.722273 | 1.4:-69334507 | MS.gene07293:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CAATATTAATTTCTAATTTA+TGG | - | chr1.4:69334225-69334244 | MS.gene07293:intron | 10.0% |
| !! | TTAATAATTCAATATAAGAT+GGG | - | chr1.4:69333456-69333475 | MS.gene07293:intron | 10.0% |
| !! | TTTAATAATTCAATATAAGA+TGG | - | chr1.4:69333455-69333474 | MS.gene07293:intron | 10.0% |
| !!! | ATCAAGTTTTTTATATAAAT+TGG | + | chr1.4:69332326-69332345 | None:intergenic | 10.0% |
| !!! | TAAATTATAAGTCTTTTTTT+GGG | + | chr1.4:69332634-69332653 | None:intergenic | 10.0% |
| !!! | TCAAGTTTTTTATATAAATT+GGG | + | chr1.4:69332325-69332344 | None:intergenic | 10.0% |
| !!! | TCATTTACTTTTTTTTTTTT+TGG | + | chr1.4:69333180-69333199 | None:intergenic | 10.0% |
| !!! | TTAAATTATAAGTCTTTTTT+TGG | + | chr1.4:69332635-69332654 | None:intergenic | 10.0% |
| !!! | TTTGAATTAGTTATTTATTT+TGG | + | chr1.4:69332722-69332741 | None:intergenic | 10.0% |
| !!! | TTTTCATATATATAAAACAA+CGG | + | chr1.4:69333871-69333890 | None:intergenic | 10.0% |
| !! | AAGTTGTTTATAAATATGAT+CGG | + | chr1.4:69333954-69333973 | None:intergenic | 15.0% |
| !! | ATATAAAAAACTTGATGTAA+AGG | - | chr1.4:69332330-69332349 | MS.gene07293:intron | 15.0% |
| !! | TAAATAATTGAGTCAAAAAT+TGG | + | chr1.4:69334329-69334348 | None:intergenic | 15.0% |
| !! | TAGTAAATAAAGTCTAAATA+AGG | + | chr1.4:69333846-69333865 | None:intergenic | 15.0% |
| !! | TTGACTCAATTATTTAATAT+TGG | - | chr1.4:69334333-69334352 | MS.gene07293:intron | 15.0% |
| !!! | AAAGACTTATAATTTAAGAT+AGG | - | chr1.4:69332638-69332657 | MS.gene07293:intron | 15.0% |
| !!! | AAGACTTATAATTTAAGATA+GGG | - | chr1.4:69332639-69332658 | MS.gene07293:intron | 15.0% |
| !!! | CTTTATTTAATGAATCTAAA+AGG | - | chr1.4:69334036-69334055 | MS.gene07293:intron | 15.0% |
| !!! | CTTTTAGATTCATTAAATAA+AGG | + | chr1.4:69334038-69334057 | None:intergenic | 15.0% |
| !!! | CTTTTAGATTCATTAAATAA+CGG | + | chr1.4:69334038-69334057 | None:intergenic | 15.0% |
| !!! | TTTGTAGATCTTTTTTTTTT+TGG | - | chr1.4:69332959-69332978 | MS.gene07293:intron | 15.0% |
| !! | AATGAAATGAAAATAAGAGA+GGG | + | chr1.4:69332438-69332457 | None:intergenic | 20.0% |
| !! | ATGTAAAAGCAAGTAAAATA+TGG | - | chr1.4:69334436-69334455 | MS.gene07293:intron | 20.0% |
| !! | CCTAAAAACATGAATATATT+CGG | + | chr1.4:69332274-69332293 | None:intergenic | 20.0% |
| !! | CGTTATTTAATGAATCTAAA+AGG | - | chr1.4:69334084-69334103 | MS.gene07293:intron | 20.0% |
| !! | TAATGAAATGAAAATAAGAG+AGG | + | chr1.4:69332439-69332458 | None:intergenic | 20.0% |
| !! | TAATTTATGGTGATATTGTT+GGG | - | chr1.4:69334238-69334257 | MS.gene07293:intron | 20.0% |
| !! | TAGTAAAATGTGAAAACAAT+TGG | - | chr1.4:69333765-69333784 | MS.gene07293:intron | 20.0% |
| !! | TTGGAACAGTTAAAAAAATA+TGG | - | chr1.4:69333784-69333803 | MS.gene07293:intron | 20.0% |
| !! | TTTAATATTGTACATGCATA+TGG | - | chr1.4:69333338-69333357 | MS.gene07293:intron | 20.0% |
| !!! | ATATGTTTAGAATTGTCAAA+TGG | - | chr1.4:69332529-69332548 | MS.gene07293:intron | 20.0% |
| !!! | CGAATATATTCATGTTTTTA+GGG | - | chr1.4:69332272-69332291 | MS.gene07293:intron | 20.0% |
| !!! | GTTTTTTATATAAATTGGGA+CGG | + | chr1.4:69332321-69332340 | None:intergenic | 20.0% |
| ! | AAGATAATTAAGGTTATTGG+AGG | - | chr1.4:69334642-69334661 | MS.gene07293:CDS | 25.0% |
| ! | AAGTAAAATATGGAAAGTTG+GGG | - | chr1.4:69334446-69334465 | MS.gene07293:intron | 25.0% |
| ! | AGATAATTAAGGTTATTGGA+GGG | - | chr1.4:69334643-69334662 | MS.gene07293:CDS | 25.0% |
| ! | ATAAGATGACATTGAATGAT+TGG | + | chr1.4:69332391-69332410 | None:intergenic | 25.0% |
| ! | ATATCGGTGAAATTAAATTC+AGG | - | chr1.4:69332787-69332806 | MS.gene07293:intron | 25.0% |
| ! | ATTACTATTAAGAATCCATC+TGG | + | chr1.4:69334567-69334586 | None:intergenic | 25.0% |
| ! | CAAGTAAAATATGGAAAGTT+GGG | - | chr1.4:69334445-69334464 | MS.gene07293:intron | 25.0% |
| ! | CGAAAAAAGAGTTTATGAAA+CGG | + | chr1.4:69331914-69331933 | None:intergenic | 25.0% |
| ! | CTAATTTATGGTGATATTGT+TGG | - | chr1.4:69334237-69334256 | MS.gene07293:intron | 25.0% |
| ! | GAAGAACAAAAATACTTACT+AGG | + | chr1.4:69332179-69332198 | None:intergenic | 25.0% |
| ! | GACAATGCATAATATATGTA+AGG | - | chr1.4:69332596-69332615 | MS.gene07293:intron | 25.0% |
| ! | GTGAAGATAATTAAGGTTAT+TGG | - | chr1.4:69334639-69334658 | MS.gene07293:CDS | 25.0% |
| ! | GTTGACCAAACTTTATATAT+AGG | - | chr1.4:69334148-69334167 | MS.gene07293:intron | 25.0% |
| ! | TCCAACAGATAAAAAATACT+TGG | + | chr1.4:69333206-69333225 | None:intergenic | 25.0% |
| ! | TGCATAATATATGTAAGGTT+TGG | - | chr1.4:69332601-69332620 | MS.gene07293:intron | 25.0% |
| ! | TTACTATTAAGAATCCATCT+GGG | + | chr1.4:69334566-69334585 | None:intergenic | 25.0% |
| ! | TTGTGTTGTATTGTATATCT+TGG | + | chr1.4:69333243-69333262 | None:intergenic | 25.0% |
| ! | TTGTTTATAAATATGATCGG+AGG | + | chr1.4:69333951-69333970 | None:intergenic | 25.0% |
| !! | AGGAGTTTAACATCTTTTAT+CGG | + | chr1.4:69333110-69333129 | None:intergenic | 25.0% |
| !! | ATAGTAATTCACACTTTTAG+TGG | - | chr1.4:69334579-69334598 | MS.gene07293:CDS | 25.0% |
| !! | CCGAATATATTCATGTTTTT+AGG | - | chr1.4:69332271-69332290 | MS.gene07293:intron | 25.0% |
| !! | TAAGGTTGATTGTCAAAATT+TGG | + | chr1.4:69333661-69333680 | None:intergenic | 25.0% |
| !! | TTCAAGATTGATTTAACACA+GGG | - | chr1.4:69334609-69334628 | MS.gene07293:CDS | 25.0% |
| !!! | ACCAAGTATTTTTTATCTGT+TGG | - | chr1.4:69333202-69333221 | MS.gene07293:intron | 25.0% |
| !!! | TTCATAAACTCTTTTTTCGA+AGG | - | chr1.4:69331915-69331934 | MS.gene07293:CDS | 25.0% |
| AAAAAGAGTTTATGAAACGG+TGG | + | chr1.4:69331911-69331930 | None:intergenic | 30.0% | |
| AAAAGAATGGCACAAAACAT+TGG | - | chr1.4:69334515-69334534 | MS.gene07293:CDS | 30.0% | |
| AAATACGTGTCGTGATATAT+CGG | - | chr1.4:69332771-69332790 | MS.gene07293:intron | 30.0% | |
| AACTTTATATATAGGACCAG+AGG | - | chr1.4:69334156-69334175 | MS.gene07293:intron | 30.0% | |
| AATCCATCTCCAAAATAAAG+TGG | + | chr1.4:69334669-69334688 | None:intergenic | 30.0% | |
| AGAGGAAGTGAAGATAATTA+AGG | - | chr1.4:69334632-69334651 | MS.gene07293:CDS | 30.0% | |
| AGAGTTATTGTCTCCTAATA+AGG | - | chr1.4:69334689-69334708 | MS.gene07293:CDS | 30.0% | |
| ATGTGAAAACTGAGCAATTA+AGG | + | chr1.4:69333679-69333698 | None:intergenic | 30.0% | |
| CATTCATCTGTATTCAAACT+TGG | - | chr1.4:69332848-69332867 | MS.gene07293:intron | 30.0% | |
| CTGGTCCTATATATAAAGTT+TGG | + | chr1.4:69334156-69334175 | None:intergenic | 30.0% | |
| GCAAGTAAAATATGGAAAGT+TGG | - | chr1.4:69334444-69334463 | MS.gene07293:intron | 30.0% | |
| TATCAACTGAGCTAAGTTTA+CGG | + | chr1.4:69332568-69332587 | None:intergenic | 30.0% | |
| TGCTTATAAATGTGATCAGA+GGG | - | chr1.4:69334113-69334132 | MS.gene07293:intron | 30.0% | |
| TGTAAAACAATAATCACCTC+AGG | + | chr1.4:69332897-69332916 | None:intergenic | 30.0% | |
| TTGCTTATAAATGTGATCAG+AGG | - | chr1.4:69334112-69334131 | MS.gene07293:intron | 30.0% | |
| ! | AATTGTCTTTTCCACTACAA+TGG | + | chr1.4:69333734-69333753 | None:intergenic | 30.0% |
| ! | ACAATAGCATGCTTCTTTTT+AGG | + | chr1.4:69334879-69334898 | None:intergenic | 30.0% |
| ! | CAATAGCATGCTTCTTTTTA+GGG | + | chr1.4:69334878-69334897 | None:intergenic | 30.0% |
| ! | GTTAACTCTTGTTATGTTGT+AGG | + | chr1.4:69333135-69333154 | None:intergenic | 30.0% |
| ! | GTTCAAGATTGATTTAACAC+AGG | - | chr1.4:69334608-69334627 | MS.gene07293:CDS | 30.0% |
| ! | TATGGTTGCTTTGTTATGTT+TGG | - | chr1.4:69333356-69333375 | MS.gene07293:intron | 30.0% |
| !! | AATGTTTTGTGCCATTCTTT+TGG | + | chr1.4:69334516-69334535 | None:intergenic | 30.0% |
| !! | GAGGTGATTATTGTTTTACA+TGG | - | chr1.4:69332897-69332916 | MS.gene07293:intron | 30.0% |
| !!! | ATAAACTCTTTTTTCGAAGG+TGG | - | chr1.4:69331918-69331937 | MS.gene07293:CDS | 30.0% |
| !!! | ATTCTTTTGGAGTGAATAGT+GGG | + | chr1.4:69334503-69334522 | None:intergenic | 30.0% |
| !!! | GTTCTCTTTGTTTTTATCGA+TGG | - | chr1.4:69333559-69333578 | MS.gene07293:intron | 30.0% |
| AAAGAGAACAATAAACGTGC+AGG | + | chr1.4:69333548-69333567 | None:intergenic | 35.0% | |
| AGATTAGTGGAGAGTTTAGA+TGG | - | chr1.4:69334738-69334757 | MS.gene07293:CDS | 35.0% | |
| ATCAACTGAGCTAAGTTTAC+GGG | + | chr1.4:69332567-69332586 | None:intergenic | 35.0% | |
| ATTGTCTCCTAATAAGGTTG+TGG | - | chr1.4:69334695-69334714 | MS.gene07293:CDS | 35.0% | |
| CAACTCAACATCTAGATATG+AGG | + | chr1.4:69333634-69333653 | None:intergenic | 35.0% | |
| CAATTCCAACCATATGGTTT+AGG | + | chr1.4:69334851-69334870 | None:intergenic | 35.0% | |
| CACTATTCACTCCAAAAGAA+TGG | - | chr1.4:69334502-69334521 | MS.gene07293:CDS | 35.0% | |
| CAGAAAGTTGAGTAAGAAAG+AGG | + | chr1.4:69332154-69332173 | None:intergenic | 35.0% | |
| CTAAACCATATGGTTGGAAT+TGG | - | chr1.4:69334849-69334868 | MS.gene07293:CDS | 35.0% | |
| CTATATTGAAATGTGCTAGC+TGG | - | chr1.4:69334277-69334296 | MS.gene07293:intron | 35.0% | |
| CTCTTTCTTACTCAACTTTC+TGG | - | chr1.4:69332152-69332171 | MS.gene07293:CDS | 35.0% | |
| GATGTAAAGGAGAGTTTAGT+TGG | - | chr1.4:69332343-69332362 | MS.gene07293:intron | 35.0% | |
| GCATGGTGTGCATATTATAT+GGG | + | chr1.4:69333521-69333540 | None:intergenic | 35.0% | |
| GGTGGTAAACAATTCCATTA+AGG | + | chr1.4:69334545-69334564 | None:intergenic | 35.0% | |
| TGAAAACGTGAAGACTAACA+TGG | - | chr1.4:69333064-69333083 | MS.gene07293:intron | 35.0% | |
| TGCATGGTGTGCATATTATA+TGG | + | chr1.4:69333522-69333541 | None:intergenic | 35.0% | |
| TTGCTTATGATCTTTCTACG+TGG | - | chr1.4:69332123-69332142 | MS.gene07293:CDS | 35.0% | |
| TTTCAGAGAATGTGCAAAGT+GGG | - | chr1.4:69331875-69331894 | MS.gene07293:CDS | 35.0% | |
| ! | AAAGAAGCATGCTATTGTTG+AGG | - | chr1.4:69334881-69334900 | MS.gene07293:CDS | 35.0% |
| ! | AAGGAGAGTTTAGTTGGTAT+TGG | - | chr1.4:69332349-69332368 | MS.gene07293:intron | 35.0% |
| ! | CTCTAGAAGGTTAAAGACAA+AGG | - | chr1.4:69334197-69334216 | MS.gene07293:intron | 35.0% |
| ! | CTCTTGTTATGTTGTAGGAT+AGG | + | chr1.4:69333130-69333149 | None:intergenic | 35.0% |
| ! | GAAAGTGTACCTAAACCATA+TGG | - | chr1.4:69334839-69334858 | MS.gene07293:CDS | 35.0% |
| ! | TTATGTTTGGAGCGTAGTAA+AGG | - | chr1.4:69333369-69333388 | MS.gene07293:intron | 35.0% |
| ! | TTTTCAGAGAATGTGCAAAG+TGG | - | chr1.4:69331874-69331893 | MS.gene07293:CDS | 35.0% |
| !! | AAAACATTGGTTGGCCTTAA+TGG | - | chr1.4:69334528-69334547 | MS.gene07293:CDS | 35.0% |
| !! | AATGTTAACTTGTGCGCTTA+AGG | - | chr1.4:69333480-69333499 | MS.gene07293:intron | 35.0% |
| !! | AGTGACTGTTCTGAAAGAAA+CGG | - | chr1.4:69331998-69332017 | MS.gene07293:CDS | 35.0% |
| !!! | CATTCTTTTGGAGTGAATAG+TGG | + | chr1.4:69334504-69334523 | None:intergenic | 35.0% |
| !!! | TCTTTTTTCGAAGGTGGAAT+CGG | - | chr1.4:69331924-69331943 | MS.gene07293:CDS | 35.0% |
| AAATCCTTCAGGGAGATTAG+TGG | - | chr1.4:69334725-69334744 | MS.gene07293:CDS | 40.0% | |
| AAGAGAGATGATTATGCCGA+TGG | + | chr1.4:69331805-69331824 | None:intergenic | 40.0% | |
| AAGTGTGTGTAAGTTTCCTG+AGG | - | chr1.4:69332878-69332897 | MS.gene07293:intron | 40.0% | |
| AATCGGTCAAATTTCCGTAC+CGG | - | chr1.4:69331941-69331960 | MS.gene07293:CDS | 40.0% | |
| AGAGAGATGATTATGCCGAT+GGG | + | chr1.4:69331804-69331823 | None:intergenic | 40.0% | |
| AGATGGATGGAATACAGCTT+CGG | - | chr1.4:69334755-69334774 | MS.gene07293:CDS | 40.0% | |
| ATAGTGATAGACGTGAGTTG+AGG | + | chr1.4:69331841-69331860 | None:intergenic | 40.0% | |
| ATATGGAAAGTTGGGGTTGA+TGG | - | chr1.4:69334453-69334472 | MS.gene07293:intron | 40.0% | |
| ATTAAGTAGCCAGTATCCCA+TGG | + | chr1.4:69333298-69333317 | None:intergenic | 40.0% | |
| CAGAGCTTTCATGAATCGAA+AGG | + | chr1.4:69333594-69333613 | None:intergenic | 40.0% | |
| CGGTTGTTGCAAAATTCTCA+GGG | - | chr1.4:69334775-69334794 | MS.gene07293:CDS | 40.0% | |
| CTATTAAGAATCCATCTGGG+TGG | + | chr1.4:69334563-69334582 | None:intergenic | 40.0% | |
| GAATGGCACAAAACATTGGT+TGG | - | chr1.4:69334519-69334538 | MS.gene07293:CDS | 40.0% | |
| GATGTAGCCAAACGATGTTT+AGG | + | chr1.4:69334801-69334820 | None:intergenic | 40.0% | |
| GGTATCCAATTCCAACCATA+TGG | + | chr1.4:69334857-69334876 | None:intergenic | 40.0% | |
| GTCTATCACTATCACAGCAA+AGG | - | chr1.4:69331849-69331868 | MS.gene07293:CDS | 40.0% | |
| GTGTACCTAAACCATATGGT+TGG | - | chr1.4:69334843-69334862 | MS.gene07293:CDS | 40.0% | |
| GTTGTAAACGCTGATGTTAG+AGG | - | chr1.4:69332080-69332099 | MS.gene07293:CDS | 40.0% | |
| TAGTGGAGAGTTTAGATGGA+TGG | - | chr1.4:69334742-69334761 | MS.gene07293:CDS | 40.0% | |
| TCGATTCATGAAAGCTCTGT+AGG | - | chr1.4:69333595-69333614 | MS.gene07293:intron | 40.0% | |
| TCGGTTGTTGCAAAATTCTC+AGG | - | chr1.4:69334774-69334793 | MS.gene07293:CDS | 40.0% | |
| TCTCATCACCTGCATTGAAT+GGG | + | chr1.4:69334362-69334381 | None:intergenic | 40.0% | |
| TTCTCATCACCTGCATTGAA+TGG | + | chr1.4:69334363-69334382 | None:intergenic | 40.0% | |
| ! | AAGAGAATGGCGAGGAATTT+TGG | + | chr1.4:69331765-69331784 | None:intergenic | 40.0% |
| ! | CCTATTGGTTGAACTCTAGA+AGG | - | chr1.4:69334184-69334203 | MS.gene07293:intron | 40.0% |
| ! | GATTGATTTAACACAGGGAG+AGG | - | chr1.4:69334614-69334633 | MS.gene07293:CDS | 40.0% |
| ! | TAGTGATAGACGTGAGTTGA+GGG | + | chr1.4:69331840-69331859 | None:intergenic | 40.0% |
| ! | TATGGAAAGTTGGGGTTGAT+GGG | - | chr1.4:69334454-69334473 | MS.gene07293:intron | 40.0% |
| ! | TGGTGATTCTTTTTCCGGTA+CGG | + | chr1.4:69331958-69331977 | None:intergenic | 40.0% |
| !! | ATTGGAGGGCCACTTTATTT+TGG | - | chr1.4:69334657-69334676 | MS.gene07293:CDS | 40.0% |
| !! | CCTTCTAGAGTTCAACCAAT+AGG | + | chr1.4:69334187-69334206 | None:intergenic | 40.0% |
| !! | TGTTCTGAAAGAAACGGAGT+TGG | - | chr1.4:69332004-69332023 | MS.gene07293:CDS | 40.0% |
| AACTGCAACATCGTCTGCAA+AGG | + | chr1.4:69334388-69334407 | None:intergenic | 45.0% | |
| AAGGCCAGCGATATGAAGAA+CGG | - | chr1.4:69333388-69333407 | MS.gene07293:intron | 45.0% | |
| ACATCAGCTACTGTGAAGGA+TGG | - | chr1.4:69334816-69334835 | MS.gene07293:CDS | 45.0% | |
| ACCGGAAAAAGAATCACCAG+AGG | - | chr1.4:69331959-69331978 | MS.gene07293:CDS | 45.0% | |
| ATAAACGTGCAGGTCATGCA+TGG | + | chr1.4:69333538-69333557 | None:intergenic | 45.0% | |
| ATCACCAGAGGGAACAGTAT+TGG | - | chr1.4:69331971-69331990 | MS.gene07293:CDS | 45.0% | |
| CAACCAATAGGTAGTACCTC+TGG | + | chr1.4:69334175-69334194 | None:intergenic | 45.0% | |
| CATCAGCTACTGTGAAGGAT+GGG | - | chr1.4:69334817-69334836 | MS.gene07293:CDS | 45.0% | |
| CCAGCAACCACAACCTTATT+AGG | + | chr1.4:69334705-69334724 | None:intergenic | 45.0% | |
| CCGGAAAAAGAATCACCAGA+GGG | - | chr1.4:69331960-69331979 | MS.gene07293:CDS | 45.0% | |
| CCTAATAAGGTTGTGGTTGC+TGG | - | chr1.4:69334702-69334721 | MS.gene07293:CDS | 45.0% | |
| CGTTTCAAGCACCATTGTAG+TGG | - | chr1.4:69333720-69333739 | MS.gene07293:intron | 45.0% | |
| CTAACATGGACCAAGCTACA+TGG | - | chr1.4:69333078-69333097 | MS.gene07293:intron | 45.0% | |
| CTCATCACCTGCATTGAATG+GGG | + | chr1.4:69334361-69334380 | None:intergenic | 45.0% | |
| GATGATTATGCCGATGGGTA+TGG | + | chr1.4:69331799-69331818 | None:intergenic | 45.0% | |
| GGAATTGTTTACCACCCAGA+TGG | - | chr1.4:69334549-69334568 | MS.gene07293:CDS | 45.0% | |
| TATCCCATGGTGCAAGTGAT+TGG | + | chr1.4:69333285-69333304 | None:intergenic | 45.0% | |
| TCTTCCAATACTGTTCCCTC+TGG | + | chr1.4:69331978-69331997 | None:intergenic | 45.0% | |
| TGGTTGCTGGAAATCCTTCA+GGG | - | chr1.4:69334715-69334734 | MS.gene07293:CDS | 45.0% | |
| ! | ATTGGTTCCCCATTCAATGC+AGG | - | chr1.4:69334351-69334370 | MS.gene07293:intron | 45.0% |
| ! | CCCTCTGGTGATTCTTTTTC+CGG | + | chr1.4:69331963-69331982 | None:intergenic | 45.0% |
| ! | GATGTTGCAGTTGATGCAGA+AGG | - | chr1.4:69334396-69334415 | MS.gene07293:intron | 45.0% |
| !! | ATGAAGAACGGCATCGACAA+AGG | - | chr1.4:69333400-69333419 | MS.gene07293:intron | 45.0% |
| !!! | GGGCCACTTTATTTTGGAGA+TGG | - | chr1.4:69334663-69334682 | MS.gene07293:CDS | 45.0% |
| !!! | TATATTAATAATTTTATGTT+AGG | - | chr1.4:69332666-69332685 | MS.gene07293:intron | 5.0% |
| CCAGAATCCGATTCCTACTC+CGG | + | chr1.4:69332061-69332080 | None:intergenic | 50.0% | |
| CGATTGACCGGAGTAGGAAT+CGG | - | chr1.4:69332051-69332070 | MS.gene07293:CDS | 50.0% | |
| CTCAGGGCCTAAACATCGTT+TGG | - | chr1.4:69334791-69334810 | MS.gene07293:CDS | 50.0% | |
| CTCTCCACTAATCTCCCTGA+AGG | + | chr1.4:69334732-69334751 | None:intergenic | 50.0% | |
| CTCTTCACAGCCATACCCAT+CGG | - | chr1.4:69331786-69331805 | MS.gene07293:CDS | 50.0% | |
| CTGAAAGAAACGGAGTTGGC+CGG | - | chr1.4:69332008-69332027 | MS.gene07293:CDS | 50.0% | |
| GATGCCGTTCTTCATATCGC+TGG | + | chr1.4:69333395-69333414 | None:intergenic | 50.0% | |
| GCACCAATCACTTGCACCAT+GGG | - | chr1.4:69333279-69333298 | MS.gene07293:intron | 50.0% | |
| GGCTACATCAGCTACTGTGA+AGG | - | chr1.4:69334812-69334831 | MS.gene07293:CDS | 50.0% | |
| GGCTGTGAAGAGGAAGAGAA+TGG | + | chr1.4:69331778-69331797 | None:intergenic | 50.0% | |
| GTGGTTGCTGGAAATCCTTC+AGG | - | chr1.4:69334714-69334733 | MS.gene07293:CDS | 50.0% | |
| TCACTTGCACCATGGGATAC+TGG | - | chr1.4:69333286-69333305 | MS.gene07293:intron | 50.0% | |
| TCGGACTCAACCATGTAGCT+TGG | + | chr1.4:69333091-69333110 | None:intergenic | 50.0% | |
| TGAAGAGGAAGAGAATGGCG+AGG | + | chr1.4:69331773-69331792 | None:intergenic | 50.0% | |
| TGCACCAATCACTTGCACCA+TGG | - | chr1.4:69333278-69333297 | MS.gene07293:intron | 50.0% | |
| !! | GGACCAGAGGTACTACCTAT+TGG | - | chr1.4:69334169-69334188 | MS.gene07293:intron | 50.0% |
| CATCCCCAACGACGCATTTC+CGG | + | chr1.4:69332030-69332049 | None:intergenic | 55.0% | |
| CCGGAGTAGGAATCGGATTC+TGG | - | chr1.4:69332058-69332077 | MS.gene07293:CDS | 55.0% | |
| CGATGGGTATGGCTGTGAAG+AGG | + | chr1.4:69331788-69331807 | None:intergenic | 55.0% | |
| CGTTGGGGATGACGATTGAC+CGG | - | chr1.4:69332039-69332058 | MS.gene07293:CDS | 55.0% | |
| GGATGACGATTGACCGGAGT+AGG | - | chr1.4:69332045-69332064 | MS.gene07293:CDS | 55.0% | |
| TTGGCCGGAAATGCGTCGTT+GGG | - | chr1.4:69332023-69332042 | MS.gene07293:CDS | 55.0% | |
| GTTGGCCGGAAATGCGTCGT+TGG | - | chr1.4:69332022-69332041 | MS.gene07293:CDS | 60.0% | |
| TGGCCGGAAATGCGTCGTTG+GGG | - | chr1.4:69332024-69332043 | MS.gene07293:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 69331738 | 69334914 | 69331738 | ID=MS.gene07293 |
| chr1.4 | mRNA | 69331738 | 69334914 | 69331738 | ID=MS.gene07293.t1;Parent=MS.gene07293 |
| chr1.4 | exon | 69334473 | 69334914 | 69334473 | ID=MS.gene07293.t1.exon1;Parent=MS.gene07293.t1 |
| chr1.4 | CDS | 69334473 | 69334914 | 69334473 | ID=cds.MS.gene07293.t1;Parent=MS.gene07293.t1 |
| chr1.4 | exon | 69331738 | 69332279 | 69331738 | ID=MS.gene07293.t1.exon2;Parent=MS.gene07293.t1 |
| chr1.4 | CDS | 69331738 | 69332279 | 69331738 | ID=cds.MS.gene07293.t1;Parent=MS.gene07293.t1 |
| Gene Sequence |
| Protein sequence |
