Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene073019.t1 | XP_003603550.1 | 96.2 | 391 | 14 | 1 | 1 | 391 | 1 | 390 | 5.40E-224 | 786.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene073019.t1 | Q9SJA7 | 62.0 | 395 | 143 | 3 | 2 | 390 | 5 | 398 | 5.8e-150 | 531.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene073019.t1 | G7J2T2 | 96.2 | 391 | 14 | 1 | 1 | 391 | 1 | 390 | 3.9e-224 | 786.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene05589 | MS.gene073019 | -0.801309 | 9.57E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene073019.t1 | MTR_3g108990 | 96.164 | 391 | 14 | 1 | 1 | 391 | 1 | 390 | 0.0 | 781 |
| MS.gene073019.t1 | MTR_3g109010 | 76.562 | 384 | 88 | 2 | 4 | 386 | 6 | 388 | 0.0 | 626 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene073019.t1 | AT2G24580 | 62.025 | 395 | 143 | 3 | 2 | 390 | 5 | 398 | 0.0 | 523 |
Find 120 sgRNAs with CRISPR-Local
Find 154 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATTCAACTTACCGGAAAAT+TGG | 0.173878 | 3.4:-94351037 | MS.gene073019:CDS |
| CCAAATGACATCTAAGATTT+AGG | 0.201701 | 3.4:-94350271 | None:intergenic |
| GAATGGGTTGAAGGTATATT+TGG | 0.252986 | 3.4:-94350534 | MS.gene073019:CDS |
| TTTGGTAAGGTTTATGTATA+CGG | 0.258322 | 3.4:-94350669 | MS.gene073019:CDS |
| TTTAAGATGGCTCCGGTTAT+TGG | 0.277339 | 3.4:-94350369 | MS.gene073019:CDS |
| GAACCCCACGGTCTCTTATC+AGG | 0.277612 | 3.4:+94350582 | None:intergenic |
| TGGAGACTCATGTTTGTTAC+TGG | 0.314415 | 3.4:-94350758 | MS.gene073019:CDS |
| CTTGCTGGTGGTTGAGGAGC+TGG | 0.325773 | 3.4:+94351081 | None:intergenic |
| CGAATTTGTCGGCAACTTGC+TGG | 0.334129 | 3.4:+94351066 | None:intergenic |
| CCTAAATCTTAGATGTCATT+TGG | 0.347651 | 3.4:+94350271 | None:intergenic |
| TGTGATGATGAATGAGTTAA+AGG | 0.351791 | 3.4:-94350556 | MS.gene073019:CDS |
| CATGAAGGTAAATTCGTAAT+TGG | 0.356936 | 3.4:-94350720 | MS.gene073019:CDS |
| CGCCGGCAAATTCAACTTAC+CGG | 0.363257 | 3.4:-94351045 | MS.gene073019:CDS |
| AATAAGTTAGTTAAAAGAAT+TGG | 0.363920 | 3.4:-94350807 | MS.gene073019:CDS |
| TGTATACGGAACACCCGTTC+TGG | 0.367868 | 3.4:-94350655 | MS.gene073019:CDS |
| TTCCGGTAAGTTGAATTTGC+CGG | 0.377261 | 3.4:+94351043 | None:intergenic |
| GTCAATATCTTACCAATAAC+CGG | 0.400144 | 3.4:+94350357 | None:intergenic |
| TGATGGAATCATACAAACTT+TGG | 0.400823 | 3.4:-94351229 | MS.gene073019:CDS |
| ATGGGCCCATGTCAAGGTGC+TGG | 0.401428 | 3.4:+94351162 | None:intergenic |
| ATTCAACTTACCGGAAAATT+GGG | 0.403849 | 3.4:-94351036 | MS.gene073019:CDS |
| TCAAAACCATTACTACCCTT+TGG | 0.419758 | 3.4:-94351252 | MS.gene073019:CDS |
| TTCGGGTCATGGGTTTAAGA+TGG | 0.432502 | 3.4:-94350382 | MS.gene073019:CDS |
| CGCTTACCAAGCTGCCAAAA+GGG | 0.435208 | 3.4:-94351366 | MS.gene073019:CDS |
| AGGATGACTGGGTCGTTGAA+TGG | 0.439447 | 3.4:+94351143 | None:intergenic |
| CCGCTTACCAAGCTGCCAAA+AGG | 0.442223 | 3.4:-94351367 | MS.gene073019:CDS |
| TTGATGAAAGCGGCGGTTCA+CGG | 0.442976 | 3.4:-94350621 | MS.gene073019:CDS |
| TGATAAGAGACCGTGGGGTT+CGG | 0.446371 | 3.4:-94350580 | MS.gene073019:CDS |
| TCAATCACAAAATCCTCATC+TGG | 0.453932 | 3.4:+94350453 | None:intergenic |
| GCTGGTGGTTGAGGAGCTGG+TGG | 0.457134 | 3.4:+94351084 | None:intergenic |
| GAATTTGCCGGCGAATTTGT+CGG | 0.465102 | 3.4:+94351055 | None:intergenic |
| ATGTTTCAAGTCAACCTCAT+TGG | 0.466534 | 3.4:+94350311 | None:intergenic |
| CGGCAACTTGCTGGTGGTTG+AGG | 0.471524 | 3.4:+94351075 | None:intergenic |
| GGATGACTGGGTCGTTGAAT+GGG | 0.476633 | 3.4:+94351144 | None:intergenic |
| CCATCACCAAAGGGTAGTAA+TGG | 0.479104 | 3.4:+94351246 | None:intergenic |
| CTGGTGGTTGAGGAGCTGGT+GGG | 0.479799 | 3.4:+94351085 | None:intergenic |
| CAGTTTGATGTGATTATCGT+CGG | 0.485107 | 3.4:-94351413 | MS.gene073019:CDS |
| TGGGCCCATGTCAAGGTGCT+GGG | 0.488184 | 3.4:+94351163 | None:intergenic |
| AAACCAGGATACTCCAGAAC+GGG | 0.488893 | 3.4:+94350642 | None:intergenic |
| TCGATAACGGAAAGGATGAC+TGG | 0.499509 | 3.4:+94351131 | None:intergenic |
| CACCACCGTGGCTCTTCCCA+CGG | 0.500105 | 3.4:-94351305 | MS.gene073019:CDS |
| GAGTTAAAGGAATGGGTTGA+AGG | 0.505787 | 3.4:-94350543 | MS.gene073019:CDS |
| AATAAACGTCGTAGCCCACT+TGG | 0.507960 | 3.4:+94351192 | None:intergenic |
| ATCGTCGGAGCCGGCGTCAT+GGG | 0.511916 | 3.4:-94351398 | MS.gene073019:CDS |
| CCATTACTACCCTTTGGTGA+TGG | 0.515191 | 3.4:-94351246 | MS.gene073019:CDS |
| TGTTACTGGAGGATTAAAGA+AGG | 0.516115 | 3.4:-94350744 | MS.gene073019:CDS |
| CAAAGCCCAGCACCTTGACA+TGG | 0.516206 | 3.4:-94351168 | MS.gene073019:CDS |
| CAAACTTTGGAAAGAAGCTC+AGG | 0.518749 | 3.4:-94351216 | MS.gene073019:CDS |
| AACTTACCGGAAAATTGGGT+GGG | 0.525415 | 3.4:-94351032 | MS.gene073019:CDS |
| CGTGGGAAGAGCCACGGTGG+TGG | 0.526610 | 3.4:+94351306 | None:intergenic |
| GATGTGATTATCGTCGGAGC+CGG | 0.528057 | 3.4:-94351407 | MS.gene073019:CDS |
| TATCGTCGGAGCCGGCGTCA+TGG | 0.528247 | 3.4:-94351399 | MS.gene073019:CDS |
| GGGTTGAAGGTATATTTGGT+GGG | 0.530189 | 3.4:-94350530 | MS.gene073019:CDS |
| ACACCCGTTCTGGAGTATCC+TGG | 0.533689 | 3.4:-94350645 | MS.gene073019:CDS |
| TCATGGGTTTAAGATGGCTC+CGG | 0.534121 | 3.4:-94350376 | MS.gene073019:CDS |
| CGTTGAATGGGCCCATGTCA+AGG | 0.534705 | 3.4:+94351156 | None:intergenic |
| TTGACTCAACTTGTGGTGGA+TGG | 0.537067 | 3.4:-94350339 | MS.gene073019:CDS |
| TGACTCAACTTGTGGTGGAT+GGG | 0.537265 | 3.4:-94350338 | MS.gene073019:CDS |
| GAAGGTAAATTCGTAATTGG+TGG | 0.537982 | 3.4:-94350717 | MS.gene073019:CDS |
| ATAGGTAGCACGAATGGTGC+GGG | 0.538731 | 3.4:+94351277 | None:intergenic |
| AAGTTAGTTAAAAGAATTGG+CGG | 0.543718 | 3.4:-94350804 | MS.gene073019:CDS |
| ATGCAAGATTGTTTCACCAC+TGG | 0.544545 | 3.4:+94350489 | None:intergenic |
| GACTCAACTTGTGGTGGATG+GGG | 0.548693 | 3.4:-94350337 | MS.gene073019:CDS |
| AAGCGGCGGTTCACGGTGGT+CGG | 0.560174 | 3.4:-94350614 | MS.gene073019:CDS |
| GATGAATGAGTTAAAGGAAT+GGG | 0.561000 | 3.4:-94350550 | MS.gene073019:CDS |
| TGTATGATTCCATCACCAAA+GGG | 0.565360 | 3.4:+94351237 | None:intergenic |
| TGGTGGTTGAGGAGCTGGTG+GGG | 0.569538 | 3.4:+94351086 | None:intergenic |
| TTGTATGATTCCATCACCAA+AGG | 0.570668 | 3.4:+94351236 | None:intergenic |
| GTTACTGGAGGATTAAAGAA+GGG | 0.571143 | 3.4:-94350743 | MS.gene073019:CDS |
| CAACTTACCGGAAAATTGGG+TGG | 0.574541 | 3.4:-94351033 | MS.gene073019:CDS |
| TTTCCGTTATCGAAAACTGC+CGG | 0.577492 | 3.4:-94351121 | MS.gene073019:CDS |
| TTTGGCAGCTTGGTAAGCGG+TGG | 0.578304 | 3.4:+94351370 | None:intergenic |
| CGATAACGGAAAGGATGACT+GGG | 0.583598 | 3.4:+94351132 | None:intergenic |
| AGACTCATGTTTGTTACTGG+AGG | 0.585228 | 3.4:-94350755 | MS.gene073019:CDS |
| AACCCCACGGTCTCTTATCA+GGG | 0.589215 | 3.4:+94350583 | None:intergenic |
| GGTTGAAGGTATATTTGGTG+GGG | 0.591110 | 3.4:-94350529 | MS.gene073019:CDS |
| GAAAGACAACACAAAGGTGA+CGG | 0.591577 | 3.4:-94350922 | MS.gene073019:CDS |
| CGTGGTAACTGTTGGAGCGT+GGG | 0.592036 | 3.4:-94350832 | MS.gene073019:CDS |
| CAAGTTGCCGACAAATTCGC+CGG | 0.592904 | 3.4:-94351062 | MS.gene073019:CDS |
| CAGTATGCCACCGTGTTCAG+TGG | 0.593018 | 3.4:+94351004 | None:intergenic |
| TGGGTTGAAGGTATATTTGG+TGG | 0.596963 | 3.4:-94350531 | MS.gene073019:CDS |
| TTGAATATAGGTAGCACGAA+TGG | 0.600981 | 3.4:+94351271 | None:intergenic |
| AGGATTAAAGAAGGGCATGA+AGG | 0.601588 | 3.4:-94350735 | MS.gene073019:CDS |
| GTAAGCGAGTGTCTGAAACA+TGG | 0.603260 | 3.4:+94350962 | None:intergenic |
| AAAGCCCAGCACCTTGACAT+GGG | 0.605253 | 3.4:-94351167 | MS.gene073019:CDS |
| GCGAATGGTGAAAAGTTTCG+CGG | 0.614581 | 3.4:-94350864 | MS.gene073019:CDS |
| GTGGGCTTGTCCACTGAACA+CGG | 0.616816 | 3.4:-94351014 | MS.gene073019:CDS |
| TATAGGTAGCACGAATGGTG+CGG | 0.617133 | 3.4:+94351276 | None:intergenic |
| ATTTGTCGGCAACTTGCTGG+TGG | 0.619796 | 3.4:+94351069 | None:intergenic |
| GAGTGTCTGAAACATGGCAG+TGG | 0.623398 | 3.4:+94350968 | None:intergenic |
| GTAACAAACATGAGTCTCCA+CGG | 0.623803 | 3.4:+94350761 | None:intergenic |
| ATCAAACTGAGAATCCTCCA+TGG | 0.630391 | 3.4:+94351427 | None:intergenic |
| GATATTGACTCAACTTGTGG+TGG | 0.632361 | 3.4:-94350343 | MS.gene073019:CDS |
| GAAAGAAGCTCAGGCCCAAG+TGG | 0.634846 | 3.4:-94351207 | MS.gene073019:CDS |
| GCTTACCAAGCTGCCAAAAG+GGG | 0.635400 | 3.4:-94351365 | MS.gene073019:CDS |
| GTATCCTGGTTTGATGAAAG+CGG | 0.638868 | 3.4:-94350631 | MS.gene073019:CDS |
| TAACAAACATGAGTCTCCAC+GGG | 0.640451 | 3.4:+94350762 | None:intergenic |
| GCGTGGTAACTGTTGGAGCG+TGG | 0.640546 | 3.4:-94350833 | MS.gene073019:CDS |
| TCCTGGTTTGATGAAAGCGG+CGG | 0.643170 | 3.4:-94350628 | MS.gene073019:CDS |
| TAAGATATTGACTCAACTTG+TGG | 0.647466 | 3.4:-94350346 | MS.gene073019:CDS |
| AATGGTGCGGGATTCACCGT+GGG | 0.647649 | 3.4:+94351289 | None:intergenic |
| TGATGAATGAGTTAAAGGAA+TGG | 0.652223 | 3.4:-94350551 | MS.gene073019:CDS |
| TGTTGATTCAAGTGAGCCAG+TGG | 0.653308 | 3.4:-94350505 | MS.gene073019:CDS |
| ATAAACGTCGTAGCCCACTT+GGG | 0.656688 | 3.4:+94351193 | None:intergenic |
| ATTCACCGTGGGAAGAGCCA+CGG | 0.656819 | 3.4:+94351300 | None:intergenic |
| TGACCCTGATAAGAGACCGT+GGG | 0.660404 | 3.4:-94350586 | MS.gene073019:CDS |
| ACCGCCGCTTTCATCAAACC+AGG | 0.661511 | 3.4:+94350627 | None:intergenic |
| GTATTCAATGACACCAGATG+AGG | 0.662964 | 3.4:-94350466 | MS.gene073019:CDS |
| TGAAATTCCGATAAAACCCG+TGG | 0.665272 | 3.4:-94350778 | MS.gene073019:CDS |
| ATCATCACAACCGAACCCCA+CGG | 0.667993 | 3.4:+94350570 | None:intergenic |
| AAAGAAGCTCAGGCCCAAGT+GGG | 0.673586 | 3.4:-94351206 | MS.gene073019:CDS |
| GAATGGTGCGGGATTCACCG+TGG | 0.676672 | 3.4:+94351288 | None:intergenic |
| GGTGGAACTTCCCATGACGC+CGG | 0.677539 | 3.4:+94351388 | None:intergenic |
| CACCGTGGGAAGAGCCACGG+TGG | 0.685084 | 3.4:+94351303 | None:intergenic |
| GGTGGATGGGGAAACCAATG+AGG | 0.686695 | 3.4:-94350325 | MS.gene073019:CDS |
| CAAACCAGGATACTCCAGAA+CGG | 0.691879 | 3.4:+94350641 | None:intergenic |
| GACCCTGATAAGAGACCGTG+GGG | 0.710999 | 3.4:-94350585 | MS.gene073019:CDS |
| ATGAAAGCGGCGGTTCACGG+TGG | 0.717613 | 3.4:-94350618 | MS.gene073019:CDS |
| GTGACCCTGATAAGAGACCG+TGG | 0.727740 | 3.4:-94350587 | MS.gene073019:CDS |
| TTTGACTTTCTCCACCACCG+TGG | 0.727973 | 3.4:-94351317 | MS.gene073019:CDS |
| GGCTTGTCCACTGAACACGG+TGG | 0.742191 | 3.4:-94351011 | MS.gene073019:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAAGTTAGTTAAAAGAAT+TGG | - | chr3.4:94350890-94350909 | MS.gene073019:CDS | 15.0% |
| !!! | GATTTTGTGATTGATTTTTT+GGG | - | chr3.4:94351253-94351272 | MS.gene073019:CDS | 20.0% |
| ! | AAGTTAGTTAAAAGAATTGG+CGG | - | chr3.4:94350893-94350912 | MS.gene073019:CDS | 25.0% |
| ! | TTTGGTAAGGTTTATGTATA+CGG | - | chr3.4:94351028-94351047 | MS.gene073019:CDS | 25.0% |
| !! | TTTGGAAAAAATGTGGTTTT+GGG | - | chr3.4:94351283-94351302 | MS.gene073019:CDS | 25.0% |
| !!! | GGATTTTGTGATTGATTTTT+TGG | - | chr3.4:94351252-94351271 | MS.gene073019:CDS | 25.0% |
| !!! | GTAGTAATGGTTTTGAATAT+AGG | + | chr3.4:94350441-94350460 | None:intergenic | 25.0% |
| AATTCAACTTACCGGAAAAT+TGG | - | chr3.4:94350660-94350679 | MS.gene073019:CDS | 30.0% | |
| ATTCAACTTACCGGAAAATT+GGG | - | chr3.4:94350661-94350680 | MS.gene073019:CDS | 30.0% | |
| CATGAAGGTAAATTCGTAAT+TGG | - | chr3.4:94350977-94350996 | MS.gene073019:CDS | 30.0% | |
| GATGAATGAGTTAAAGGAAT+GGG | - | chr3.4:94351147-94351166 | MS.gene073019:CDS | 30.0% | |
| GTCAATATCTTACCAATAAC+CGG | + | chr3.4:94351343-94351362 | None:intergenic | 30.0% | |
| TGATGAATGAGTTAAAGGAA+TGG | - | chr3.4:94351146-94351165 | MS.gene073019:CDS | 30.0% | |
| TGATGGAATCATACAAACTT+TGG | - | chr3.4:94350468-94350487 | MS.gene073019:CDS | 30.0% | |
| ! | GTTTGGAAAAAATGTGGTTT+TGG | - | chr3.4:94351282-94351301 | MS.gene073019:CDS | 30.0% |
| ! | TGTGATGATGAATGAGTTAA+AGG | - | chr3.4:94351141-94351160 | MS.gene073019:CDS | 30.0% |
| !! | TAAGATATTGACTCAACTTG+TGG | - | chr3.4:94351351-94351370 | MS.gene073019:CDS | 30.0% |
| !!! | AGGTTGACTTGAAACATTTT+AGG | - | chr3.4:94351392-94351411 | MS.gene073019:CDS | 30.0% |
| !!! | GACTTGAAACATTTTAGGAT+TGG | - | chr3.4:94351397-94351416 | MS.gene073019:CDS | 30.0% |
| !!! | TGTTTTGAAAGACAACACAA+AGG | - | chr3.4:94350769-94350788 | MS.gene073019:CDS | 30.0% |
| !!! | TTTGTGATTGATTTTTTGGG+TGG | - | chr3.4:94351256-94351275 | MS.gene073019:CDS | 30.0% |
| !!! | TTTTGCTAGCTTTTTTGGTA+AGG | - | chr3.4:94351015-94351034 | MS.gene073019:CDS | 30.0% |
| AAAAAATGCGTGGTAACTGT+TGG | - | chr3.4:94350857-94350876 | MS.gene073019:CDS | 35.0% | |
| CAGTTTGATGTGATTATCGT+CGG | - | chr3.4:94350284-94350303 | MS.gene073019:CDS | 35.0% | |
| CCAAAAAAGCTAGCAAAAGT+TGG | + | chr3.4:94351013-94351032 | None:intergenic | 35.0% | |
| GAAGGTAAATTCGTAATTGG+TGG | - | chr3.4:94350980-94350999 | MS.gene073019:CDS | 35.0% | |
| GTTACTGGAGGATTAAAGAA+GGG | - | chr3.4:94350954-94350973 | MS.gene073019:CDS | 35.0% | |
| TCAAAACCATTACTACCCTT+TGG | - | chr3.4:94350445-94350464 | MS.gene073019:CDS | 35.0% | |
| TCAATCACAAAATCCTCATC+TGG | + | chr3.4:94351247-94351266 | None:intergenic | 35.0% | |
| TGGTGAGTTTGGAAAAAATG+TGG | - | chr3.4:94351276-94351295 | MS.gene073019:CDS | 35.0% | |
| TGTATGATTCCATCACCAAA+GGG | + | chr3.4:94350463-94350482 | None:intergenic | 35.0% | |
| TGTTACTGGAGGATTAAAGA+AGG | - | chr3.4:94350953-94350972 | MS.gene073019:CDS | 35.0% | |
| TTGAATATAGGTAGCACGAA+TGG | + | chr3.4:94350429-94350448 | None:intergenic | 35.0% | |
| TTGTATGATTCCATCACCAA+AGG | + | chr3.4:94350464-94350483 | None:intergenic | 35.0% | |
| ! | ATGTTTCAAGTCAACCTCAT+TGG | + | chr3.4:94351389-94351408 | None:intergenic | 35.0% |
| !! | GAATGGGTTGAAGGTATATT+TGG | - | chr3.4:94351163-94351182 | MS.gene073019:CDS | 35.0% |
| !! | GTGACGGATATAAAAAACGA+CGG | - | chr3.4:94350791-94350810 | MS.gene073019:CDS | 35.0% |
| !!! | AAAAATGTGGTTTTGGGTGT+TGG | - | chr3.4:94351289-94351308 | MS.gene073019:CDS | 35.0% |
| !!! | AAAATGTGGTTTTGGGTGTT+GGG | - | chr3.4:94351290-94351309 | MS.gene073019:CDS | 35.0% |
| !!! | CCAACTTTTGCTAGCTTTTT+TGG | - | chr3.4:94351010-94351029 | MS.gene073019:CDS | 35.0% |
| AACTTACCGGAAAATTGGGT+GGG | - | chr3.4:94350665-94350684 | MS.gene073019:CDS | 40.0% | |
| ACGGATATAAAAAACGACGG+AGG | - | chr3.4:94350794-94350813 | MS.gene073019:CDS | 40.0% | |
| ATGCAAGATTGTTTCACCAC+TGG | + | chr3.4:94351211-94351230 | None:intergenic | 40.0% | |
| CAGACACTCGCTTACAAAAA+CGG | - | chr3.4:94350743-94350762 | MS.gene073019:CDS | 40.0% | |
| GAAAGACAACACAAAGGTGA+CGG | - | chr3.4:94350775-94350794 | MS.gene073019:CDS | 40.0% | |
| GTAACAAACATGAGTCTCCA+CGG | + | chr3.4:94350939-94350958 | None:intergenic | 40.0% | |
| GTATTCAATGACACCAGATG+AGG | - | chr3.4:94351231-94351250 | MS.gene073019:CDS | 40.0% | |
| TAACAAACATGAGTCTCCAC+GGG | + | chr3.4:94350938-94350957 | None:intergenic | 40.0% | |
| TGAAATTCCGATAAAACCCG+TGG | - | chr3.4:94350919-94350938 | MS.gene073019:CDS | 40.0% | |
| TTTCCGTTATCGAAAACTGC+CGG | - | chr3.4:94350576-94350595 | MS.gene073019:CDS | 40.0% | |
| ! | AGACTCATGTTTGTTACTGG+AGG | - | chr3.4:94350942-94350961 | MS.gene073019:CDS | 40.0% |
| ! | AGGATTAAAGAAGGGCATGA+AGG | - | chr3.4:94350962-94350981 | MS.gene073019:CDS | 40.0% |
| ! | CAAACTTTGGAAAGAAGCTC+AGG | - | chr3.4:94350481-94350500 | MS.gene073019:CDS | 40.0% |
| ! | GGGTTGAAGGTATATTTGGT+GGG | - | chr3.4:94351167-94351186 | MS.gene073019:CDS | 40.0% |
| ! | GGTTGAAGGTATATTTGGTG+GGG | - | chr3.4:94351168-94351187 | MS.gene073019:CDS | 40.0% |
| ! | GTATCCTGGTTTGATGAAAG+CGG | - | chr3.4:94351066-94351085 | MS.gene073019:CDS | 40.0% |
| ! | GTTGTAGTTTTTACCGCGAA+TGG | - | chr3.4:94350818-94350837 | MS.gene073019:CDS | 40.0% |
| ! | TGGAGACTCATGTTTGTTAC+TGG | - | chr3.4:94350939-94350958 | MS.gene073019:CDS | 40.0% |
| ! | TGGGTTGAAGGTATATTTGG+TGG | - | chr3.4:94351166-94351185 | MS.gene073019:CDS | 40.0% |
| ! | TTCCGGTAAGTTGAATTTGC+CGG | + | chr3.4:94350657-94350676 | None:intergenic | 40.0% |
| ! | TTTAAGATGGCTCCGGTTAT+TGG | - | chr3.4:94351328-94351347 | MS.gene073019:CDS | 40.0% |
| ! | TTTCCGGCAGTTTTCGATAA+CGG | + | chr3.4:94350582-94350601 | None:intergenic | 40.0% |
| !! | GAGTTAAAGGAATGGGTTGA+AGG | - | chr3.4:94351154-94351173 | MS.gene073019:CDS | 40.0% |
| !! | GATATTGACTCAACTTGTGG+TGG | - | chr3.4:94351354-94351373 | MS.gene073019:CDS | 40.0% |
| !! | GGTGGGGTATTTTATGTTTC+CGG | + | chr3.4:94350598-94350617 | None:intergenic | 40.0% |
| !!! | GATTTTTTGGGTGGTGAGTT+TGG | - | chr3.4:94351265-94351284 | MS.gene073019:CDS | 40.0% |
| AAACCAGGATACTCCAGAAC+GGG | + | chr3.4:94351058-94351077 | None:intergenic | 45.0% | |
| AATAAACGTCGTAGCCCACT+TGG | + | chr3.4:94350508-94350527 | None:intergenic | 45.0% | |
| ATAAACGTCGTAGCCCACTT+GGG | + | chr3.4:94350507-94350526 | None:intergenic | 45.0% | |
| CAAACCAGGATACTCCAGAA+CGG | + | chr3.4:94351059-94351078 | None:intergenic | 45.0% | |
| CAACTTACCGGAAAATTGGG+TGG | - | chr3.4:94350664-94350683 | MS.gene073019:CDS | 45.0% | |
| CCATCACCAAAGGGTAGTAA+TGG | + | chr3.4:94350454-94350473 | None:intergenic | 45.0% | |
| CCATTACTACCCTTTGGTGA+TGG | - | chr3.4:94350451-94350470 | MS.gene073019:CDS | 45.0% | |
| GAATTTGCCGGCGAATTTGT+CGG | + | chr3.4:94350645-94350664 | None:intergenic | 45.0% | |
| GCGAATGGTGAAAAGTTTCG+CGG | - | chr3.4:94350833-94350852 | MS.gene073019:CDS | 45.0% | |
| GTTTCGCGGTAAAAAATGCG+TGG | - | chr3.4:94350847-94350866 | MS.gene073019:CDS | 45.0% | |
| TATAGGTAGCACGAATGGTG+CGG | + | chr3.4:94350424-94350443 | None:intergenic | 45.0% | |
| TTCGGGTCATGGGTTTAAGA+TGG | - | chr3.4:94351315-94351334 | MS.gene073019:CDS | 45.0% | |
| ! | AAACATGGCAGTGGCTTTTG+TGG | + | chr3.4:94350723-94350742 | None:intergenic | 45.0% |
| ! | AACATGGCAGTGGCTTTTGT+GGG | + | chr3.4:94350722-94350741 | None:intergenic | 45.0% |
| ! | GCGAAACTTTTCACCATTCG+CGG | + | chr3.4:94350834-94350853 | None:intergenic | 45.0% |
| ! | GTAAGCGAGTGTCTGAAACA+TGG | + | chr3.4:94350738-94350757 | None:intergenic | 45.0% |
| ! | TCATGGGTTTAAGATGGCTC+CGG | - | chr3.4:94351321-94351340 | MS.gene073019:CDS | 45.0% |
| ! | TTGACTCAACTTGTGGTGGA+TGG | - | chr3.4:94351358-94351377 | MS.gene073019:CDS | 45.0% |
| !! | CGATAACGGAAAGGATGACT+GGG | + | chr3.4:94350568-94350587 | None:intergenic | 45.0% |
| !! | TCGATAACGGAAAGGATGAC+TGG | + | chr3.4:94350569-94350588 | None:intergenic | 45.0% |
| !! | TGACTCAACTTGTGGTGGAT+GGG | - | chr3.4:94351359-94351378 | MS.gene073019:CDS | 45.0% |
| !! | TGAGTCTCCACGGGTTTTAT+CGG | + | chr3.4:94350929-94350948 | None:intergenic | 45.0% |
| !! | TGTTGATTCAAGTGAGCCAG+TGG | - | chr3.4:94351192-94351211 | MS.gene073019:CDS | 45.0% |
| !!! | GAGTGTTTTGAGACCCCTTT+TGG | + | chr3.4:94350348-94350367 | None:intergenic | 45.0% |
| !!! | GGCAGTTTTCGATAACGGAA+AGG | + | chr3.4:94350577-94350596 | None:intergenic | 45.0% |
| !!! | GGTTTTGGGTGTTGGGTTTT+CGG | - | chr3.4:94351297-94351316 | MS.gene073019:CDS | 45.0% |
| !!! | GTTTTGGGTGTTGGGTTTTC+GGG | - | chr3.4:94351298-94351317 | MS.gene073019:CDS | 45.0% |
| AAAGAAGCTCAGGCCCAAGT+GGG | - | chr3.4:94350491-94350510 | MS.gene073019:CDS | 50.0% | |
| AAAGCCCAGCACCTTGACAT+GGG | - | chr3.4:94350530-94350549 | MS.gene073019:CDS | 50.0% | |
| AACCCCACGGTCTCTTATCA+GGG | + | chr3.4:94351117-94351136 | None:intergenic | 50.0% | |
| AGGATGACTGGGTCGTTGAA+TGG | + | chr3.4:94350557-94350576 | None:intergenic | 50.0% | |
| ATAGGTAGCACGAATGGTGC+GGG | + | chr3.4:94350423-94350442 | None:intergenic | 50.0% | |
| ATCATCACAACCGAACCCCA+CGG | + | chr3.4:94351130-94351149 | None:intergenic | 50.0% | |
| CAAGTTGCCGACAAATTCGC+CGG | - | chr3.4:94350635-94350654 | MS.gene073019:CDS | 50.0% | |
| CGAATTTGTCGGCAACTTGC+TGG | + | chr3.4:94350634-94350653 | None:intergenic | 50.0% | |
| CGCCGGCAAATTCAACTTAC+CGG | - | chr3.4:94350652-94350671 | MS.gene073019:CDS | 50.0% | |
| CGCTTACCAAGCTGCCAAAA+GGG | - | chr3.4:94350331-94350350 | MS.gene073019:CDS | 50.0% | |
| GATGTGATTATCGTCGGAGC+CGG | - | chr3.4:94350290-94350309 | MS.gene073019:CDS | 50.0% | |
| GCTTACCAAGCTGCCAAAAG+GGG | - | chr3.4:94350332-94350351 | MS.gene073019:CDS | 50.0% | |
| GGATGACTGGGTCGTTGAAT+GGG | + | chr3.4:94350556-94350575 | None:intergenic | 50.0% | |
| TGACCCTGATAAGAGACCGT+GGG | - | chr3.4:94351111-94351130 | MS.gene073019:CDS | 50.0% | |
| TGATAAGAGACCGTGGGGTT+CGG | - | chr3.4:94351117-94351136 | MS.gene073019:CDS | 50.0% | |
| TGTATACGGAACACCCGTTC+TGG | - | chr3.4:94351042-94351061 | MS.gene073019:CDS | 50.0% | |
| TTGATGAAAGCGGCGGTTCA+CGG | - | chr3.4:94351076-94351095 | MS.gene073019:CDS | 50.0% | |
| ! | CCTTTTGGCAGCTTGGTAAG+CGG | + | chr3.4:94350333-94350352 | None:intergenic | 50.0% |
| ! | GACAAGCCCACCCAATTTTC+CGG | + | chr3.4:94350674-94350693 | None:intergenic | 50.0% |
| ! | GAGTGTCTGAAACATGGCAG+TGG | + | chr3.4:94350732-94350751 | None:intergenic | 50.0% |
| ! | TCCTGGTTTGATGAAAGCGG+CGG | - | chr3.4:94351069-94351088 | MS.gene073019:CDS | 50.0% |
| ! | TTTGACTTTCTCCACCACCG+TGG | - | chr3.4:94350380-94350399 | MS.gene073019:CDS | 50.0% |
| !! | ATTTGTCGGCAACTTGCTGG+TGG | + | chr3.4:94350631-94350650 | None:intergenic | 50.0% |
| !! | GACTCAACTTGTGGTGGATG+GGG | - | chr3.4:94351360-94351379 | MS.gene073019:CDS | 50.0% |
| !!! | GTGTTGGGTTTTCGGGTCAT+GGG | - | chr3.4:94351305-94351324 | MS.gene073019:CDS | 50.0% |
| AATGGTGCGGGATTCACCGT+GGG | + | chr3.4:94350411-94350430 | None:intergenic | 55.0% | |
| ATTCACCGTGGGAAGAGCCA+CGG | + | chr3.4:94350400-94350419 | None:intergenic | 55.0% | |
| CAAAGCCCAGCACCTTGACA+TGG | - | chr3.4:94350529-94350548 | MS.gene073019:CDS | 55.0% | |
| CAGTATGCCACCGTGTTCAG+TGG | + | chr3.4:94350696-94350715 | None:intergenic | 55.0% | |
| CCGCTTACCAAGCTGCCAAA+AGG | - | chr3.4:94350330-94350349 | MS.gene073019:CDS | 55.0% | |
| CGTGGTAACTGTTGGAGCGT+GGG | - | chr3.4:94350865-94350884 | MS.gene073019:CDS | 55.0% | |
| CGTTGAATGGGCCCATGTCA+AGG | + | chr3.4:94350544-94350563 | None:intergenic | 55.0% | |
| GAAAGAAGCTCAGGCCCAAG+TGG | - | chr3.4:94350490-94350509 | MS.gene073019:CDS | 55.0% | |
| GAACCCCACGGTCTCTTATC+AGG | + | chr3.4:94351118-94351137 | None:intergenic | 55.0% | |
| GACCCTGATAAGAGACCGTG+GGG | - | chr3.4:94351112-94351131 | MS.gene073019:CDS | 55.0% | |
| GGTGGATGGGGAAACCAATG+AGG | - | chr3.4:94351372-94351391 | MS.gene073019:CDS | 55.0% | |
| GTGACCCTGATAAGAGACCG+TGG | - | chr3.4:94351110-94351129 | MS.gene073019:CDS | 55.0% | |
| GTGGGCTTGTCCACTGAACA+CGG | - | chr3.4:94350683-94350702 | MS.gene073019:CDS | 55.0% | |
| TTTGGCAGCTTGGTAAGCGG+TGG | + | chr3.4:94350330-94350349 | None:intergenic | 55.0% | |
| ! | ACCGCCGCTTTCATCAAACC+AGG | + | chr3.4:94351073-94351092 | None:intergenic | 55.0% |
| ! | TGAGACCCCTTTTGGCAGCT+TGG | + | chr3.4:94350340-94350359 | None:intergenic | 55.0% |
| !! | ACACCCGTTCTGGAGTATCC+TGG | - | chr3.4:94351052-94351071 | MS.gene073019:CDS | 55.0% |
| !!! | GGTGTTGGGTTTTCGGGTCA+TGG | - | chr3.4:94351304-94351323 | MS.gene073019:CDS | 55.0% |
| ATGAAAGCGGCGGTTCACGG+TGG | - | chr3.4:94351079-94351098 | MS.gene073019:CDS | 60.0% | |
| ATGGGCCCATGTCAAGGTGC+TGG | + | chr3.4:94350538-94350557 | None:intergenic | 60.0% | |
| CTGGTGGTTGAGGAGCTGGT+GGG | + | chr3.4:94350615-94350634 | None:intergenic | 60.0% | |
| CTTGCTGGTGGTTGAGGAGC+TGG | + | chr3.4:94350619-94350638 | None:intergenic | 60.0% | |
| GAATGGTGCGGGATTCACCG+TGG | + | chr3.4:94350412-94350431 | None:intergenic | 60.0% | |
| GCGTGGTAACTGTTGGAGCG+TGG | - | chr3.4:94350864-94350883 | MS.gene073019:CDS | 60.0% | |
| GGCTTGTCCACTGAACACGG+TGG | - | chr3.4:94350686-94350705 | MS.gene073019:CDS | 60.0% | |
| GGTGGAACTTCCCATGACGC+CGG | + | chr3.4:94350312-94350331 | None:intergenic | 60.0% | |
| TGGTGGTTGAGGAGCTGGTG+GGG | + | chr3.4:94350614-94350633 | None:intergenic | 60.0% | |
| ! | TGGGCCCATGTCAAGGTGCT+GGG | + | chr3.4:94350537-94350556 | None:intergenic | 60.0% |
| !! | CGGCAACTTGCTGGTGGTTG+AGG | + | chr3.4:94350625-94350644 | None:intergenic | 60.0% |
| AAGCGGCGGTTCACGGTGGT+CGG | - | chr3.4:94351083-94351102 | MS.gene073019:CDS | 65.0% | |
| ATCGTCGGAGCCGGCGTCAT+GGG | - | chr3.4:94350299-94350318 | MS.gene073019:CDS | 65.0% | |
| CACCACCGTGGCTCTTCCCA+CGG | - | chr3.4:94350392-94350411 | MS.gene073019:CDS | 65.0% | |
| GCTGGTGGTTGAGGAGCTGG+TGG | + | chr3.4:94350616-94350635 | None:intergenic | 65.0% | |
| TATCGTCGGAGCCGGCGTCA+TGG | - | chr3.4:94350298-94350317 | MS.gene073019:CDS | 65.0% | |
| CACCGTGGGAAGAGCCACGG+TGG | + | chr3.4:94350397-94350416 | None:intergenic | 70.0% | |
| CGTGGGAAGAGCCACGGTGG+TGG | + | chr3.4:94350394-94350413 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 94350272 | 94351447 | 94350272 | ID=MS.gene073019 |
| chr3.4 | mRNA | 94350272 | 94351447 | 94350272 | ID=MS.gene073019.t1;Parent=MS.gene073019 |
| chr3.4 | exon | 94350272 | 94351447 | 94350272 | ID=MS.gene073019.t1.exon1;Parent=MS.gene073019.t1 |
| chr3.4 | CDS | 94350272 | 94351447 | 94350272 | ID=cds.MS.gene073019.t1;Parent=MS.gene073019.t1 |
| Gene Sequence |
| Protein sequence |
