AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene05589

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene05589.t1 MTR_3g463080 97.093 516 11 1 1 512 1 516 0.0 1010
MS.gene05589.t1 MTR_8g030600 75.000 468 109 3 53 512 121 588 0.0 732
MS.gene05589.t1 MTR_7g077830 79.215 433 88 1 82 512 102 534 0.0 731
MS.gene05589.t1 MTR_8g030600 72.798 386 97 3 53 430 121 506 0.0 588
MS.gene05589.t1 MTR_7g066780 39.909 441 262 2 74 511 66 506 2.24e-112 342
MS.gene05589.t1 MTR_4g116030 38.780 508 286 12 16 508 27 524 2.90e-110 338
MS.gene05589.t1 MTR_2g027710 82.759 174 30 0 302 475 61 234 5.37e-104 312
MS.gene05589.t1 MTR_5g069630 41.045 402 230 2 116 510 111 512 2.66e-96 301
MS.gene05589.t1 MTR_4g030900 37.868 441 246 7 99 512 4 443 4.94e-83 265
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene05589.t1 AT2G29650 76.983 517 109 4 1 512 1 512 0.0 778
MS.gene05589.t1 AT4G00370 76.703 455 102 2 62 512 87 541 0.0 731
MS.gene05589.t1 AT2G29650 87.310 394 50 0 119 512 7 400 0.0 709
MS.gene05589.t1 AT2G29650 87.692 390 48 0 123 512 1 390 0.0 703
MS.gene05589.t1 AT2G29650 72.457 403 101 4 1 398 1 398 0.0 559
MS.gene05589.t1 AT2G38060 39.563 503 282 8 29 510 10 511 9.99e-113 343
MS.gene05589.t1 AT5G20380 42.417 422 233 7 94 508 90 508 4.23e-106 327
MS.gene05589.t1 AT3G46980 39.787 470 270 5 54 510 58 527 1.35e-105 326
MS.gene05589.t1 AT3G46980 39.787 470 270 5 54 510 58 527 1.38e-105 326
MS.gene05589.t1 AT5G20380 42.417 422 233 7 94 508 142 560 1.55e-105 327
MS.gene05589.t1 AT3G46980 39.787 470 270 5 54 510 106 575 4.67e-105 326
MS.gene05589.t1 AT2G38060 38.753 449 254 6 29 457 10 457 2.09e-95 300
MS.gene05589.t1 AT3G46980 40.634 347 198 3 172 510 1 347 6.22e-83 261
MS.gene05589.t1 AT3G46980 40.634 347 198 3 172 510 1 347 6.22e-83 261
MS.gene05589.t1 AT3G46980 40.634 347 198 3 172 510 1 347 6.41e-83 261
MS.gene05589.t1 AT3G46980 40.634 347 198 3 172 510 1 347 6.41e-83 261
MS.gene05589.t1 AT5G44370 36.322 435 246 7 100 512 7 432 2.27e-80 257
MS.gene05589.t1 AT3G46980 38.298 282 166 3 237 510 2 283 7.24e-60 199

Find 144 sgRNAs with CRISPR-Local

Find 309 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAGTACAGTCTTCTTTCTTT+TGG 0.193133 3.2:-53918477 MS.gene05589:CDS
ATGGCAATTTCTGCAAATTT+TGG 0.205166 3.2:-53916798 MS.gene05589:CDS
TGAATAATATTCTGTCAAAA+TGG 0.210887 3.2:-53918021 MS.gene05589:CDS
GGCAAAAGTGGGACACTATC+AGG 0.253332 3.2:+53917551 None:intergenic
ATGCAAACAGTTGGGTTTCT+TGG 0.260195 3.2:-53916618 MS.gene05589:CDS
TGCAGATTGCTGGTGGAATA+TGG 0.288175 3.2:-53918345 MS.gene05589:intron
AAGTTCAATCTTACAGAATC+TGG 0.297006 3.2:-53916849 MS.gene05589:CDS
GCCATCCATACTGGTGAATT+AGG 0.309328 3.2:+53917909 None:intergenic
CCTTTCCTAATTCACCAGTA+TGG 0.312682 3.2:-53917914 MS.gene05589:CDS
GTTTGGCAGCTACGGGAGTT+AGG 0.354746 3.2:+53918257 None:intergenic
ATAACAATAACCCATCTCTT+AGG 0.357009 3.2:+53919751 None:intergenic
AGCCAGTACTCCAGCGGTAT+TGG 0.361974 3.2:+53915755 None:intergenic
GGTTTCAGTTGGGCTATATT+TGG 0.362452 3.2:-53915395 MS.gene05589:CDS
ATTAGTTGCCCGTGCATTCA+TGG 0.371690 3.2:-53918218 MS.gene05589:CDS
TAGAAAAGGCAATCCAAGTT+TGG 0.374667 3.2:+53918240 None:intergenic
AATCCACTTACAGAATATCT+AGG 0.375990 3.2:+53915917 None:intergenic
ATCTAGGGGCTATATCTTGA+TGG 0.391646 3.2:+53915933 None:intergenic
TATTTCCTTCACAGGTTCCT+TGG 0.393829 3.2:+53917612 None:intergenic
CTGTGTCACCGGAGAGGAAA+AGG 0.395180 3.2:-53919928 MS.gene05589:CDS
AGATACTTGTTGCAGATTGC+TGG 0.402333 3.2:-53918355 MS.gene05589:intron
TTGGTTCTCTAGGAACAGTT+TGG 0.409152 3.2:-53917868 MS.gene05589:CDS
TGAATGGTTGAGGTTTGTTC+TGG 0.413113 3.2:+53919975 None:intergenic
ATCCAATACCGCTGGAGTAC+TGG 0.418136 3.2:-53915757 MS.gene05589:CDS
CGATGTCAGCAGAGTACAAC+TGG 0.419514 3.2:-53918519 MS.gene05589:CDS
GCCCGTGCATTCATGGGAAT+TGG 0.421683 3.2:-53918211 MS.gene05589:CDS
ACCTGTGAAGGAAATACCTT+GGG 0.422628 3.2:-53917605 MS.gene05589:CDS
TAAGAAAGTAGTAAGTGGTT+TGG 0.423850 3.2:-53919830 MS.gene05589:CDS
CCCCAAGGTATTTCCTTCAC+AGG 0.432539 3.2:+53917604 None:intergenic
ACACTGATGGCCATCCATAC+TGG 0.434066 3.2:+53917900 None:intergenic
TTTGTCGAAACCACCGGTCT+GGG 0.438410 3.2:-53917575 MS.gene05589:CDS
GGAGTACTGGCTGGTGTCCT+TGG 0.438475 3.2:-53915744 MS.gene05589:CDS
AAGAAGTTGATTGCTACAAA+TGG 0.439320 3.2:-53917640 MS.gene05589:CDS
GAACTTTCATTCTTCTTACA+TGG 0.440920 3.2:-53917519 MS.gene05589:CDS
GGTGATGATGTTGAGGTAGA+AGG 0.444357 3.2:-53919805 MS.gene05589:CDS
GTCCTTGGAACAGCAGCAAC+AGG 0.445368 3.2:-53915729 MS.gene05589:CDS
GAATAATATTCTGTCAAAAT+GGG 0.446232 3.2:-53918020 MS.gene05589:CDS
TGCAGATAATGCAAACAGTT+GGG 0.451193 3.2:-53916626 MS.gene05589:intron
CAATCCAAGTTTGGCAGCTA+CGG 0.451750 3.2:+53918249 None:intergenic
ACTCCCGTAGCTGCCAAACT+TGG 0.453418 3.2:-53918253 MS.gene05589:CDS
CTTACTTGATTATAGTATGT+TGG 0.454637 3.2:+53917493 None:intergenic
ACGGAGAAGGTGAATGGTTG+AGG 0.454848 3.2:+53919965 None:intergenic
TTGCAGATAATGCAAACAGT+TGG 0.460476 3.2:-53916627 MS.gene05589:intron
GTGAATTAGGAAAGGTGAAA+AGG 0.468146 3.2:+53917922 None:intergenic
GAAAGGTGAAAAGGCCAATC+CGG 0.475695 3.2:+53917931 None:intergenic
TTCCCCAGTTGTGGCAAAAG+TGG 0.480489 3.2:+53917539 None:intergenic
TAGCATTTGGCGTCATTTGG+TGG 0.480914 3.2:-53918294 MS.gene05589:CDS
GCAGATTGCTGGTGGAATAT+GGG 0.485868 3.2:-53918344 MS.gene05589:intron
TTACTAGGGTGTTGCTATGC+CGG 0.487176 3.2:-53918047 MS.gene05589:intron
CCTTGGATCGGTCACCGGAT+TGG 0.487323 3.2:-53917945 MS.gene05589:CDS
TTCCTCTCCGGTGACACAGC+AGG 0.487509 3.2:+53919932 None:intergenic
GCTGTGTATGACTTGCAGTC+AGG 0.488174 3.2:-53916541 MS.gene05589:intron
TCATACTTACTTGATGCCTC+TGG 0.490752 3.2:+53919868 None:intergenic
CATTGCACCTGCTGTGTCAC+CGG 0.492613 3.2:-53919939 MS.gene05589:CDS
CCCGAGGTGTATCTGTTACA+AGG 0.493334 3.2:-53916749 MS.gene05589:CDS
ATCCACTTACAGAATATCTA+GGG 0.500543 3.2:+53915918 None:intergenic
TCTTCTCAGGGGATATTGCT+CGG 0.502683 3.2:-53915783 MS.gene05589:intron
GAGAAGTAGATCATTAGCTC+TGG 0.509100 3.2:-53917984 MS.gene05589:CDS
ACTGACGCATTCTCTCAGTC+TGG 0.509935 3.2:-53915968 MS.gene05589:CDS
AATCCAAGTTTGGCAGCTAC+GGG 0.510619 3.2:+53918250 None:intergenic
GAAGAAGAAGAAGGTGATGG+TGG 0.511806 3.2:+53920015 None:intergenic
CACAGCAGGTGCAATGGAAA+CGG 0.512666 3.2:+53919946 None:intergenic
TTAGTTGCCCGTGCATTCAT+GGG 0.520099 3.2:-53918217 MS.gene05589:CDS
GTTCATAAGAAAGTAGTAAG+TGG 0.520316 3.2:-53919835 MS.gene05589:CDS
AAGGAACAAGCTCTTCTCCT+TGG 0.521751 3.2:-53919786 MS.gene05589:CDS
GACAGAATATTATTCATGGC+CGG 0.522317 3.2:+53918028 None:intergenic
GCACGGGCAACTAATAGAAA+AGG 0.522495 3.2:+53918226 None:intergenic
AATTGAGTTAAGAAGAAAGC+AGG 0.522748 3.2:+53916594 None:intergenic
CTCGGTCTATCCAATACCGC+TGG 0.524452 3.2:-53915765 MS.gene05589:CDS
TCCTAATTCACCAGTATGGA+TGG 0.526206 3.2:-53917910 MS.gene05589:CDS
CACCAATTCCCATGAATGCA+CGG 0.527914 3.2:+53918209 None:intergenic
ATGTACCTTGGATCGGTCAC+CGG 0.533825 3.2:-53917950 MS.gene05589:CDS
GTATACAGTGGCATGTACCT+TGG 0.538242 3.2:-53917962 MS.gene05589:CDS
TGTGTCACCGGAGAGGAAAA+GGG 0.540730 3.2:-53919927 MS.gene05589:CDS
TCAGTTGGGCTATATTTGGT+CGG 0.544903 3.2:-53915391 MS.gene05589:CDS
AACCTGTGAAGGAAATACCT+TGG 0.548334 3.2:-53917606 MS.gene05589:CDS
AGAGGCATCAAGTAAGTATG+AGG 0.551649 3.2:-53919866 MS.gene05589:CDS
GAACAAGCTCTTCTCCTTGG+TGG 0.552276 3.2:-53919783 MS.gene05589:CDS
AACAAGCTCTTCTCCTTGGT+GGG 0.552346 3.2:-53919782 MS.gene05589:CDS
GAATGAAAGTTCCCCAGTTG+TGG 0.554343 3.2:+53917530 None:intergenic
CCACATTGATTCTCCTGTGG+TGG 0.558004 3.2:-53916568 MS.gene05589:CDS
CGGTGACACAGCAGGTGCAA+TGG 0.559969 3.2:+53919940 None:intergenic
AAAGTAGTAAGTGGTTTGGA+TGG 0.562988 3.2:-53919826 MS.gene05589:CDS
TTGGGGATACCTCCTCACTC+AGG 0.564095 3.2:-53918458 MS.gene05589:intron
ATGTTAAGTCTGAGAAGCAT+GGG 0.564348 3.2:-53919891 MS.gene05589:CDS
AGTGGTGAAGAAGAAGAAGA+AGG 0.565187 3.2:+53920006 None:intergenic
GGAATATGGGCTGACACAGT+GGG 0.567890 3.2:-53918331 MS.gene05589:CDS
AGGTGCAATGGAAACGGAGA+AGG 0.568561 3.2:+53919952 None:intergenic
GATCTACTTCTCTCTGCCAC+AGG 0.573723 3.2:+53917995 None:intergenic
TGTACTAAACCTACAGTGGT+GGG 0.573906 3.2:+53918493 None:intergenic
ACCAATTCCCATGAATGCAC+GGG 0.574833 3.2:+53918210 None:intergenic
GTCTGAGAAGCATGGGCCAG+AGG 0.575496 3.2:-53919884 MS.gene05589:CDS
TTCGACAAAATTAATCCCCA+AGG 0.576040 3.2:+53917589 None:intergenic
TGGAATATGGGCTGACACAG+TGG 0.577010 3.2:-53918332 MS.gene05589:CDS
TCCCCAGTTGTGGCAAAAGT+GGG 0.577515 3.2:+53917540 None:intergenic
AACTGTTCCTAGAGAACCAA+AGG 0.579562 3.2:+53917871 None:intergenic
GGAGAGGAAAAGGGAAGGTG+TGG 0.581117 3.2:-53919918 MS.gene05589:CDS
TTTGGATGGTGATGATGTTG+AGG 0.582526 3.2:-53919812 MS.gene05589:CDS
GACACTATCAGGGCCCAGAC+CGG 0.582554 3.2:+53917562 None:intergenic
CCGAGGTGTATCTGTTACAA+GGG 0.583608 3.2:-53916748 MS.gene05589:CDS
ATCTGTTACAAGGGTCCGCA+AGG 0.583717 3.2:-53916739 MS.gene05589:intron
CGCATTTCAGGATCATCAAG+TGG 0.585309 3.2:+53917673 None:intergenic
CTGTACTAAACCTACAGTGG+TGG 0.586896 3.2:+53918492 None:intergenic
GATGTTAAGTCTGAGAAGCA+TGG 0.588801 3.2:-53919892 MS.gene05589:CDS
GCAAAAGTGGGACACTATCA+GGG 0.591083 3.2:+53917552 None:intergenic
GAGAGGAAAAGGGAAGGTGT+GGG 0.603132 3.2:-53919917 MS.gene05589:CDS
TACTTGTTGCAGATTGCTGG+TGG 0.606708 3.2:-53918352 MS.gene05589:intron
GCTATATTTGGTCGGAACCG+TGG 0.608376 3.2:-53915383 MS.gene05589:CDS
AATACCGCTGGAGTACTGGC+TGG 0.608922 3.2:-53915753 MS.gene05589:CDS
CCAATCCGGTGACCGATCCA+AGG 0.609770 3.2:+53917945 None:intergenic
AACCTGTTGCTGCTGTTCCA+AGG 0.609936 3.2:+53915727 None:intergenic
ATGGAAACGGAGAAGGTGAA+TGG 0.615461 3.2:+53919959 None:intergenic
CCATACTGGTGAATTAGGAA+AGG 0.616112 3.2:+53917914 None:intergenic
CAGTGGCATGTACCTTGGAT+CGG 0.616265 3.2:-53917957 MS.gene05589:CDS
CCTTGTAACAGATACACCTC+GGG 0.618317 3.2:+53916749 None:intergenic
AACTGGAACCCCACCACTGT+AGG 0.618941 3.2:-53918502 MS.gene05589:CDS
CCCTTGTAACAGATACACCT+CGG 0.622315 3.2:+53916748 None:intergenic
ATTTGGTCGGAACCGTGGTG+TGG 0.624024 3.2:-53915378 MS.gene05589:CDS
TCTGTCAAAATGGGTTCCTG+TGG 0.627501 3.2:-53918011 MS.gene05589:CDS
CCAAAGGAGTAAAACACTGA+TGG 0.628506 3.2:+53917887 None:intergenic
ACAGGTTACATTCTGCAGCA+TGG 0.629656 3.2:-53915711 MS.gene05589:intron
ACTATCAGGGCCCAGACCGG+TGG 0.630408 3.2:+53917565 None:intergenic
CAGTTGTACTCTGCTGACAT+CGG 0.633640 3.2:+53918520 None:intergenic
TTTGTTCTGGTACGTGACAG+TGG 0.645348 3.2:+53919988 None:intergenic
CACTTGATGATCCTGAAATG+CGG 0.647130 3.2:-53917672 MS.gene05589:CDS
GAAATTGCCATCGTAAGCCA+CGG 0.647992 3.2:+53916810 None:intergenic
TGCATTCATGGGAATTGGTG+AGG 0.647999 3.2:-53918206 MS.gene05589:intron
ATACACAGCACAGCCACCAC+AGG 0.650207 3.2:+53916555 None:intergenic
GTACTAAACCTACAGTGGTG+GGG 0.651673 3.2:+53918494 None:intergenic
ATTGAGTTAAGAAGAAAGCA+GGG 0.663481 3.2:+53916595 None:intergenic
CACCTGCTGTGTCACCGGAG+AGG 0.665468 3.2:-53919934 MS.gene05589:CDS
AGACTGTACTAAACCTACAG+TGG 0.666932 3.2:+53918489 None:intergenic
AGCTACGGGAGTTAGGATTG+TGG 0.669995 3.2:+53918264 None:intergenic
TCACCGGAGAGGAAAAGGGA+AGG 0.672873 3.2:-53919923 MS.gene05589:CDS
GAGCCACATTGATTCTCCTG+TGG 0.675935 3.2:-53916571 MS.gene05589:CDS
TCCACTTACAGAATATCTAG+GGG 0.679967 3.2:+53915919 None:intergenic
GCAGACACTCTTGTGACCCG+AGG 0.682221 3.2:-53916765 MS.gene05589:CDS
TGAAACCACATACCTGAGTG+AGG 0.683840 3.2:+53918446 None:intergenic
ATATGGGCTGACACAGTGGG+AGG 0.689041 3.2:-53918328 MS.gene05589:CDS
TCATTAGCTCTGGTATACAG+TGG 0.696345 3.2:-53917974 MS.gene05589:CDS
CGAGAAAAGGTTCCACACCA+CGG 0.697691 3.2:+53915366 None:intergenic
AACCACATACCTGAGTGAGG+AGG 0.707329 3.2:+53918449 None:intergenic
GACACCAGCCAGTACTCCAG+CGG 0.708242 3.2:+53915749 None:intergenic
CCACCACAGGAGAATCAATG+TGG 0.729771 3.2:+53916568 None:intergenic
CCTGTGAAGGAAATACCTTG+GGG 0.772599 3.2:-53917604 MS.gene05589:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATTTAAATTACAAAAAAGT+TGG - chr3.2:53915738-53915757 MS.gene05589:CDS 10.0%
!!! AATTTTATTATATCTCTTTA+TGG - chr3.2:53919789-53919808 MS.gene05589:CDS 10.0%
!! TTATTCTTACTAAATGTTAA+TGG - chr3.2:53919722-53919741 MS.gene05589:CDS 15.0%
!! TTCGAAATTATAAAATTCAA+TGG + chr3.2:53919522-53919541 None:intergenic 15.0%
!!! TATTTTCAAATATATATCAC+AGG - chr3.2:53918513-53918532 MS.gene05589:CDS 15.0%
!!! TTTTATTCTTATTAACTAAG+AGG - chr3.2:53916425-53916444 MS.gene05589:intron 15.0%
!! AAAACAGTTTATAGCTTATA+CGG - chr3.2:53916261-53916280 MS.gene05589:intron 20.0%
!! AAAGAAATAGTTTCAATTTG+TGG + chr3.2:53918072-53918091 None:intergenic 20.0%
!! AAGTGAAATGTAATTGATTA+AGG - chr3.2:53916136-53916155 MS.gene05589:intron 20.0%
!! AATAAGTTGTTTATCCAAAT+AGG - chr3.2:53916342-53916361 MS.gene05589:intron 20.0%
!! AGTGAAATGTAATTGATTAA+GGG - chr3.2:53916137-53916156 MS.gene05589:intron 20.0%
!! ATAAGTTGTTTATCCAAATA+GGG - chr3.2:53916343-53916362 MS.gene05589:intron 20.0%
!! ATCAAATCATTACTAATATC+AGG + chr3.2:53917251-53917270 None:intergenic 20.0%
!! ATGATAATTTCTCAATTCAA+TGG + chr3.2:53918300-53918319 None:intergenic 20.0%
!! ATTACAAAAAAGTTGGATAT+TGG - chr3.2:53915745-53915764 MS.gene05589:CDS 20.0%
!! GAATAAATCAAGTAGAAATA+TGG + chr3.2:53918442-53918461 None:intergenic 20.0%
!! GAATAATATTCTGTCAAAAT+GGG - chr3.2:53917370-53917389 MS.gene05589:intron 20.0%
!! GTTAAAAACTAATCTAAACT+AGG + chr3.2:53916376-53916395 None:intergenic 20.0%
!! GTTTATTAATAGAAATACCT+TGG + chr3.2:53918127-53918146 None:intergenic 20.0%
!! TCAAATCATTACTAATATCA+GGG + chr3.2:53917250-53917269 None:intergenic 20.0%
!! TGAATAATATTCTGTCAAAA+TGG - chr3.2:53917369-53917388 MS.gene05589:intron 20.0%
!!! CATAAAAAAACTTGATGTTT+TGG - chr3.2:53916588-53916607 MS.gene05589:CDS 20.0%
!!! GTAAGTTTTTCTTTTTCTTT+TGG - chr3.2:53917915-53917934 MS.gene05589:CDS 20.0%
!!! TTAGATTAGTTTTTAACCTA+TGG - chr3.2:53916379-53916398 MS.gene05589:intron 20.0%
!!! TTTTGACAGAATATTATTCA+TGG + chr3.2:53917369-53917388 None:intergenic 20.0%
! AAATAAGTAAAGAGAATGGA+TGG + chr3.2:53919949-53919968 None:intergenic 25.0%
! AACTTAATGAGTTAGTTAGT+TGG + chr3.2:53916014-53916033 None:intergenic 25.0%
! AAGAAGATAATCAACCTAAA+AGG + chr3.2:53918246-53918265 None:intergenic 25.0%
! ACAGAAAAAACACAGAAAAT+TGG + chr3.2:53917677-53917696 None:intergenic 25.0%
! ACTTTCTCCAGAAATATTTA+AGG + chr3.2:53918967-53918986 None:intergenic 25.0%
! AGAAGATAATCAACCTAAAA+GGG + chr3.2:53918245-53918264 None:intergenic 25.0%
! AGAGAAGAAAAAAAAGTTGA+AGG + chr3.2:53918683-53918702 None:intergenic 25.0%
! AGGAAAAATTTAAACAAGTG+AGG + chr3.2:53919393-53919412 None:intergenic 25.0%
! AGGTAAAAATTAAATGTGCA+TGG + chr3.2:53916066-53916085 None:intergenic 25.0%
! ATTCACAATCCTTCATATTA+CGG - chr3.2:53916546-53916565 MS.gene05589:CDS 25.0%
! ATTTATGGCTATGTAATCAT+AGG - chr3.2:53916693-53916712 MS.gene05589:intron 25.0%
! ATTTCCTATATTTCTTCTCA+GGG - chr3.2:53919595-53919614 MS.gene05589:intron 25.0%
! CAAAGAAATGTATAGTAATG+CGG + chr3.2:53919304-53919323 None:intergenic 25.0%
! CAATAGATTATGTTACTATC+AGG + chr3.2:53918324-53918343 None:intergenic 25.0%
! CATATAAGATGTTGAAAAAG+TGG + chr3.2:53915714-53915733 None:intergenic 25.0%
! CGTGTACATATATTTCATAA+AGG + chr3.2:53917614-53917633 None:intergenic 25.0%
! CTGAAAATAAGTAAAGAGAA+TGG + chr3.2:53919953-53919972 None:intergenic 25.0%
! CTTACTTGATTATAGTATGT+TGG + chr3.2:53917900-53917919 None:intergenic 25.0%
! GAGAAGAAAAAAAAGTTGAA+GGG + chr3.2:53918682-53918701 None:intergenic 25.0%
! GTAGATACACTTACTAATTT+AGG - chr3.2:53915829-53915848 MS.gene05589:intron 25.0%
! GTTATTACTCGTATTGTAAT+TGG - chr3.2:53916107-53916126 MS.gene05589:intron 25.0%
! TGTTAATGGTCAATTTATCT+CGG - chr3.2:53919736-53919755 MS.gene05589:CDS 25.0%
! TTTATGGCTATGTAATCATA+GGG - chr3.2:53916694-53916713 MS.gene05589:intron 25.0%
!! AATGATTTGATTCGTATAGT+TGG - chr3.2:53917260-53917279 MS.gene05589:intron 25.0%
!! ATGATAAGCAAATGTACTTT+TGG - chr3.2:53918040-53918059 MS.gene05589:CDS 25.0%
!! CTTGTTACTTAGAAGATTTA+TGG - chr3.2:53916678-53916697 MS.gene05589:intron 25.0%
!! GTTTAAATTTTTCCTGAACA+GGG - chr3.2:53919398-53919417 MS.gene05589:intron 25.0%
!! TAAGATTTCATCGAAGTATT+AGG + chr3.2:53919904-53919923 None:intergenic 25.0%
!! TGCTTTTCTTCTATGTAATA+TGG - chr3.2:53915674-53915693 MS.gene05589:intron 25.0%
!! TGTTTAAATTTTTCCTGAAC+AGG - chr3.2:53919397-53919416 MS.gene05589:intron 25.0%
!!! AGAAACTGTTTTTGAAATTC+TGG - chr3.2:53916626-53916645 MS.gene05589:intron 25.0%
!!! ATGCACATTTAATTTTTACC+TGG - chr3.2:53916065-53916084 MS.gene05589:intron 25.0%
!!! CAATCTGAAAAGTATCAATT+TGG - chr3.2:53919842-53919861 MS.gene05589:CDS 25.0%
!!! CATTCTCTTTACTTATTTTC+AGG - chr3.2:53919951-53919970 MS.gene05589:CDS 25.0%
AAGTTCAATCTTACAGAATC+TGG - chr3.2:53918541-53918560 MS.gene05589:CDS 30.0%
AATCCACTTACAGAATATCT+AGG + chr3.2:53919476-53919495 None:intergenic 30.0%
AATTGAGTTAAGAAGAAAGC+AGG + chr3.2:53918799-53918818 None:intergenic 30.0%
ACTAATCTAAACTAGGCTTA+AGG + chr3.2:53916369-53916388 None:intergenic 30.0%
ACTTATTTGAGCTTATCTAC+CGG - chr3.2:53916173-53916192 MS.gene05589:intron 30.0%
ATAACAATAACCCATCTCTT+AGG + chr3.2:53915642-53915661 None:intergenic 30.0%
ATCCACTTACAGAATATCTA+GGG + chr3.2:53919475-53919494 None:intergenic 30.0%
ATTGAGTTAAGAAGAAAGCA+GGG + chr3.2:53918798-53918817 None:intergenic 30.0%
CATTTCCTATATTTCTTCTC+AGG - chr3.2:53919594-53919613 MS.gene05589:intron 30.0%
CTCTAATTAGAAACTTCCAT+AGG + chr3.2:53916398-53916417 None:intergenic 30.0%
GAACTTTCATTCTTCTTACA+TGG - chr3.2:53917871-53917890 MS.gene05589:CDS 30.0%
GGCTTGAAGTTCAAAATTAA+GGG + chr3.2:53916996-53917015 None:intergenic 30.0%
GTCTCATCCTTAAATATTTC+TGG - chr3.2:53918957-53918976 MS.gene05589:intron 30.0%
GTTCATAAGAAAGTAGTAAG+TGG - chr3.2:53915555-53915574 MS.gene05589:intron 30.0%
TAAGAAAGTAGTAAGTGGTT+TGG - chr3.2:53915560-53915579 MS.gene05589:intron 30.0%
TGAGTTTGAAAACCTTAGAT+TGG - chr3.2:53916760-53916779 MS.gene05589:CDS 30.0%
TGGCTTGAAGTTCAAAATTA+AGG + chr3.2:53916997-53917016 None:intergenic 30.0%
TTGCGAATAGCAGAAAATAA+TGG - chr3.2:53919024-53919043 MS.gene05589:intron 30.0%
TTTCCTATATTTCTTCTCAG+GGG - chr3.2:53919596-53919615 MS.gene05589:intron 30.0%
! AACTTCTTTTGGATCTTACT+AGG - chr3.2:53917328-53917347 MS.gene05589:intron 30.0%
! AAGAAGTTGATTGCTACAAA+TGG - chr3.2:53917750-53917769 MS.gene05589:intron 30.0%
! ACTTCTTTTGGATCTTACTA+GGG - chr3.2:53917329-53917348 MS.gene05589:intron 30.0%
! AGTACAGTCTTCTTTCTTTT+GGG - chr3.2:53916914-53916933 MS.gene05589:intron 30.0%
! ATGGCAATTTCTGCAAATTT+TGG - chr3.2:53918592-53918611 MS.gene05589:intron 30.0%
! ATTAATTTTGTCGAAACCAC+CGG - chr3.2:53917809-53917828 MS.gene05589:intron 30.0%
! GTTTTCTGCTTATAGGATAA+CGG - chr3.2:53916235-53916254 MS.gene05589:intron 30.0%
! GTTTTGTATATGGCTTAGTA+AGG - chr3.2:53917544-53917563 MS.gene05589:CDS 30.0%
! TAAGCAAATGTACTTTTGGT+TGG - chr3.2:53918044-53918063 MS.gene05589:intron 30.0%
! TAATTTTGAACTTCAAGCCA+TGG - chr3.2:53916997-53917016 MS.gene05589:intron 30.0%
! TAGTACAGTCTTCTTTCTTT+TGG - chr3.2:53916913-53916932 MS.gene05589:intron 30.0%
! TGTTTGCTAAGTATGTTGTT+TGG - chr3.2:53917940-53917959 MS.gene05589:CDS 30.0%
! TTAGTCTATGATCTTTTCAC+CGG + chr3.2:53920051-53920070 None:intergenic 30.0%
! TTTGCTCTTTTCACATTTAC+AGG - chr3.2:53916824-53916843 MS.gene05589:CDS 30.0%
!! ATAAGCTGTTTTCTGCTTAT+AGG - chr3.2:53916228-53916247 MS.gene05589:intron 30.0%
!! ATGTTTTCAAGGTTTCAGTT+GGG - chr3.2:53919985-53920004 MS.gene05589:CDS 30.0%
!! ATTTAATTTTTACCTGGTCC+AGG - chr3.2:53916071-53916090 MS.gene05589:intron 30.0%
!! TAAAGGAAGCATTTATGTGA+AGG + chr3.2:53917597-53917616 None:intergenic 30.0%
!! TTACTTATTTTCAGGCTCAT+GGG - chr3.2:53919959-53919978 MS.gene05589:CDS 30.0%
!! TTTACTTATTTTCAGGCTCA+TGG - chr3.2:53919958-53919977 MS.gene05589:CDS 30.0%
!!! CTTTTAGTTTTTACAGTCCA+AGG - chr3.2:53918107-53918126 MS.gene05589:intron 30.0%
!!! GAACAGTTTGGTTTTGTATA+TGG - chr3.2:53917534-53917553 MS.gene05589:CDS 30.0%
!!! GTTTGCTTCTTGTTTTGTAT+TGG - chr3.2:53918871-53918890 MS.gene05589:intron 30.0%
!!! TGATGTTTTGGAAATAACTG+TGG - chr3.2:53916600-53916619 MS.gene05589:CDS 30.0%
AAAAGTTCAGCTAGTGAACA+AGG - chr3.2:53916499-53916518 MS.gene05589:intron 35.0%
AAGTTAGTTGCTAATGTACC+AGG + chr3.2:53915960-53915979 None:intergenic 35.0%
ACTAATATCAGGGACAGTAT+CGG + chr3.2:53917240-53917259 None:intergenic 35.0%
AGAAAGTTCGATGGAACTAA+TGG + chr3.2:53919366-53919385 None:intergenic 35.0%
AGTACCATGAGTGTTTATTC+CGG + chr3.2:53916195-53916214 None:intergenic 35.0%
ATAACATAAACAGCTTCTCC+TGG + chr3.2:53916092-53916111 None:intergenic 35.0%
ATTCTACAAGACTCTGACTT+TGG + chr3.2:53919209-53919228 None:intergenic 35.0%
CAATCTGCAACAAGTATCTA+CGG + chr3.2:53917034-53917053 None:intergenic 35.0%
CACGAATAGAATCAGAAGAA+TGG + chr3.2:53918271-53918290 None:intergenic 35.0%
GACAGAATATTATTCATGGC+CGG + chr3.2:53917365-53917384 None:intergenic 35.0%
GAGACTATGTTGTCAAATAG+TGG + chr3.2:53919187-53919206 None:intergenic 35.0%
GCAACTTTACCGTAATATGA+AGG + chr3.2:53916558-53916577 None:intergenic 35.0%
GTGAATTAGGAAAGGTGAAA+AGG + chr3.2:53917471-53917490 None:intergenic 35.0%
TAGAAAAGGCAATCCAAGTT+TGG + chr3.2:53917153-53917172 None:intergenic 35.0%
TATCCCCTGAGAAGAAATAT+AGG + chr3.2:53919602-53919621 None:intergenic 35.0%
TCCAATACTCCAATGAATTG+CGG - chr3.2:53916717-53916736 MS.gene05589:intron 35.0%
TCCACTTACAGAATATCTAG+GGG + chr3.2:53919474-53919493 None:intergenic 35.0%
TGCAGATAATGCAAACAGTT+GGG - chr3.2:53918764-53918783 MS.gene05589:intron 35.0%
TTCGACAAAATTAATCCCCA+AGG + chr3.2:53917804-53917823 None:intergenic 35.0%
TTGCAGATAATGCAAACAGT+TGG - chr3.2:53918763-53918782 MS.gene05589:intron 35.0%
! AAAACCTTAGTCTCCCTTTT+AGG - chr3.2:53918229-53918248 MS.gene05589:CDS 35.0%
! AAAAGGGAGACTAAGGTTTT+CGG + chr3.2:53918229-53918248 None:intergenic 35.0%
! AAAGTAGTAAGTGGTTTGGA+TGG - chr3.2:53915564-53915583 MS.gene05589:intron 35.0%
! ATGTTAAGTCTGAGAAGCAT+GGG - chr3.2:53915499-53915518 MS.gene05589:intron 35.0%
! CAAAAGAAGTTAGCTTCACA+TGG + chr3.2:53917319-53917338 None:intergenic 35.0%
! CATGTGAAGCTAACTTCTTT+TGG - chr3.2:53917317-53917336 MS.gene05589:intron 35.0%
! GCAATCAACTTCTTTTCTTC+TGG + chr3.2:53917744-53917763 None:intergenic 35.0%
! GCAATTTCTGCAAATTTTGG+TGG - chr3.2:53918595-53918614 MS.gene05589:intron 35.0%
! GGAAGTTTTTCCTAAGAGAT+GGG - chr3.2:53915629-53915648 MS.gene05589:intron 35.0%
! GTACAGTCTTCTTTCTTTTG+GGG - chr3.2:53916915-53916934 MS.gene05589:intron 35.0%
! TCAATGGTACTGAAAATTCC+AGG + chr3.2:53919506-53919525 None:intergenic 35.0%
! TGCTACAAATGGTTTTTCCA+AGG - chr3.2:53917761-53917780 MS.gene05589:intron 35.0%
! TTTTAGCATTTGGCGTCATT+TGG - chr3.2:53917093-53917112 MS.gene05589:intron 35.0%
! TTTTCGGCAAAAGAACAAAG+AGG + chr3.2:53918213-53918232 None:intergenic 35.0%
!! GATGTTTTCAAGGTTTCAGT+TGG - chr3.2:53919984-53920003 MS.gene05589:CDS 35.0%
!! GGAAAGCAAGTTTTAGCATT+TGG - chr3.2:53917083-53917102 MS.gene05589:intron 35.0%
!! TTTCTGCAAATTTTGGTGGT+TGG - chr3.2:53918599-53918618 MS.gene05589:intron 35.0%
!!! TGTGTTTTTTCTGTACCTGT+AGG - chr3.2:53917683-53917702 MS.gene05589:CDS 35.0%
!!! TTTTACTCCTTTGGTTCTCT+AGG - chr3.2:53917512-53917531 MS.gene05589:CDS 35.0%
AACCTGTGAAGGAAATACCT+TGG - chr3.2:53917784-53917803 MS.gene05589:intron 40.0%
AACTGTTCCTAGAGAACCAA+AGG + chr3.2:53917522-53917541 None:intergenic 40.0%
ACCACTGCAATACCAATCTA+AGG + chr3.2:53916775-53916794 None:intergenic 40.0%
ACCGCAATTCATTGGAGTAT+TGG + chr3.2:53916721-53916740 None:intergenic 40.0%
ACCTGTGAAGGAAATACCTT+GGG - chr3.2:53917785-53917804 MS.gene05589:intron 40.0%
ACCTTAGATTGGTATTGCAG+TGG - chr3.2:53916771-53916790 MS.gene05589:CDS 40.0%
AGACTGTACTAAACCTACAG+TGG + chr3.2:53916904-53916923 None:intergenic 40.0%
AGTGGTGAAGAAGAAGAAGA+AGG + chr3.2:53915387-53915406 None:intergenic 40.0%
ATCTAGGGGCTATATCTTGA+TGG + chr3.2:53919460-53919479 None:intergenic 40.0%
ATGCAAACAGTTGGGTTTCT+TGG - chr3.2:53918772-53918791 MS.gene05589:intron 40.0%
CACATATCAGTGTTAGAGTC+CGG + chr3.2:53915898-53915917 None:intergenic 40.0%
CCAAAGGAGTAAAACACTGA+TGG + chr3.2:53917506-53917525 None:intergenic 40.0%
CCATACTGGTGAATTAGGAA+AGG + chr3.2:53917479-53917498 None:intergenic 40.0%
CCTTTCCTAATTCACCAGTA+TGG - chr3.2:53917476-53917495 MS.gene05589:intron 40.0%
CTAATATCAGGGACAGTATC+GGG + chr3.2:53917239-53917258 None:intergenic 40.0%
GAAGAAGAAGAAGAAGGTGA+TGG + chr3.2:53915381-53915400 None:intergenic 40.0%
GAGAAGTAGATCATTAGCTC+TGG - chr3.2:53917406-53917425 MS.gene05589:intron 40.0%
GATGTTAAGTCTGAGAAGCA+TGG - chr3.2:53915498-53915517 MS.gene05589:intron 40.0%
GGTTTCAGTTGGGCTATATT+TGG - chr3.2:53919995-53920014 MS.gene05589:CDS 40.0%
TATTTCCTTCACAGGTTCCT+TGG + chr3.2:53917781-53917800 None:intergenic 40.0%
TCAACCTAAAAGGGAGACTA+AGG + chr3.2:53918236-53918255 None:intergenic 40.0%
TCAGTTGGGCTATATTTGGT+CGG - chr3.2:53919999-53920018 MS.gene05589:CDS 40.0%
TCATACTTACTTGATGCCTC+TGG + chr3.2:53915525-53915544 None:intergenic 40.0%
TCCTAATTCACCAGTATGGA+TGG - chr3.2:53917480-53917499 MS.gene05589:intron 40.0%
TCTACCGGAATAAACACTCA+TGG - chr3.2:53916188-53916207 MS.gene05589:intron 40.0%
TGAAGTTACTGTACGCAACA+GGG - chr3.2:53919052-53919071 MS.gene05589:intron 40.0%
TGTACTAAACCTACAGTGGT+GGG + chr3.2:53916900-53916919 None:intergenic 40.0%
TTAGGAAAAACTTCCCACCA+AGG + chr3.2:53915624-53915643 None:intergenic 40.0%
TTGAAGTTACTGTACGCAAC+AGG - chr3.2:53919051-53919070 MS.gene05589:intron 40.0%
! AGATACTTGTTGCAGATTGC+TGG - chr3.2:53917035-53917054 MS.gene05589:intron 40.0%
! CACTTGATGATCCTGAAATG+CGG - chr3.2:53917718-53917737 MS.gene05589:intron 40.0%
! CCATCAGTGTTTTACTCCTT+TGG - chr3.2:53917503-53917522 MS.gene05589:CDS 40.0%
! CTCATGGGATGATGTTTTCA+AGG - chr3.2:53919974-53919993 MS.gene05589:CDS 40.0%
! GACTATTTTGCGTTTTACCG+TGG - chr3.2:53918563-53918582 MS.gene05589:intron 40.0%
! GCTAAGTATGTTGTTTGGTG+TGG - chr3.2:53917945-53917964 MS.gene05589:CDS 40.0%
! GGGAAGTTTTTCCTAAGAGA+TGG - chr3.2:53915628-53915647 MS.gene05589:intron 40.0%
! GTAAGTGGATTCATTGTACC+TGG - chr3.2:53919485-53919504 MS.gene05589:intron 40.0%
! GTTGCAGAATATGAAGCATC+TGG + chr3.2:53919256-53919275 None:intergenic 40.0%
! TAGCTAACACTTGTGATGGA+AGG + chr3.2:53915937-53915956 None:intergenic 40.0%
! TGAATGGTTGAGGTTTGTTC+TGG + chr3.2:53915418-53915437 None:intergenic 40.0%
! TTGGTTCTCTAGGAACAGTT+TGG - chr3.2:53917522-53917541 MS.gene05589:CDS 40.0%
! TTTGGATGGTGATGATGTTG+AGG - chr3.2:53915578-53915597 MS.gene05589:intron 40.0%
! TTTTTCCAAGGAACCTGTGA+AGG - chr3.2:53917773-53917792 MS.gene05589:intron 40.0%
!! AGAGAATGGATGGTGTCATA+TGG + chr3.2:53919939-53919958 None:intergenic 40.0%
!! AGAGGCATCAAGTAAGTATG+AGG - chr3.2:53915524-53915543 MS.gene05589:intron 40.0%
!! TCATTAGCTCTGGTATACAG+TGG - chr3.2:53917416-53917435 MS.gene05589:intron 40.0%
AACAAGCTCTTCTCCTTGGT+GGG - chr3.2:53915608-53915627 MS.gene05589:intron 45.0%
AAGGAACAAGCTCTTCTCCT+TGG - chr3.2:53915604-53915623 MS.gene05589:intron 45.0%
AATCCAAGTTTGGCAGCTAC+GGG + chr3.2:53917143-53917162 None:intergenic 45.0%
ACAGGTTACATTCTGCAGCA+TGG - chr3.2:53919679-53919698 MS.gene05589:intron 45.0%
ACCAATTCCCATGAATGCAC+GGG + chr3.2:53917183-53917202 None:intergenic 45.0%
ACTAGGCTTAAGGCCCTATT+TGG + chr3.2:53916359-53916378 None:intergenic 45.0%
AGGATGAGACACACAAGAAC+TGG + chr3.2:53918947-53918966 None:intergenic 45.0%
AGTTGAAGGGAGATACCTTG+CGG + chr3.2:53918669-53918688 None:intergenic 45.0%
ATGGAAACGGAGAAGGTGAA+TGG + chr3.2:53915434-53915453 None:intergenic 45.0%
ATTAGTTGCCCGTGCATTCA+TGG - chr3.2:53917172-53917191 MS.gene05589:intron 45.0%
CAATCCAAGTTTGGCAGCTA+CGG + chr3.2:53917144-53917163 None:intergenic 45.0%
CACCAATTCCCATGAATGCA+CGG + chr3.2:53917184-53917203 None:intergenic 45.0%
CAGGTAGCTAACACTTGTGA+TGG + chr3.2:53915941-53915960 None:intergenic 45.0%
CAGTTGTACTCTGCTGACAT+CGG + chr3.2:53916873-53916892 None:intergenic 45.0%
CATCACAAGTGTTAGCTACC+TGG - chr3.2:53915939-53915958 MS.gene05589:CDS 45.0%
CCCTTGTAACAGATACACCT+CGG + chr3.2:53918645-53918664 None:intergenic 45.0%
CCGAGGTGTATCTGTTACAA+GGG - chr3.2:53918642-53918661 MS.gene05589:intron 45.0%
CCTGTGAAGGAAATACCTTG+GGG - chr3.2:53917786-53917805 MS.gene05589:intron 45.0%
CCTTGTAACAGATACACCTC+GGG + chr3.2:53918644-53918663 None:intergenic 45.0%
CGCATTTCAGGATCATCAAG+TGG + chr3.2:53917720-53917739 None:intergenic 45.0%
CTGTACTAAACCTACAGTGG+TGG + chr3.2:53916901-53916920 None:intergenic 45.0%
GAAAGGTGAAAAGGCCAATC+CGG + chr3.2:53917462-53917481 None:intergenic 45.0%
GAAATTGCCATCGTAAGCCA+CGG + chr3.2:53918583-53918602 None:intergenic 45.0%
GAATGAAAGTTCCCCAGTTG+TGG + chr3.2:53917863-53917882 None:intergenic 45.0%
GCAAAAGTGGGACACTATCA+GGG + chr3.2:53917841-53917860 None:intergenic 45.0%
GCACGGGCAACTAATAGAAA+AGG + chr3.2:53917167-53917186 None:intergenic 45.0%
GCAGATTGCTGGTGGAATAT+GGG - chr3.2:53917046-53917065 MS.gene05589:intron 45.0%
GCCATCCATACTGGTGAATT+AGG + chr3.2:53917484-53917503 None:intergenic 45.0%
GCCCCTAGATATTCTGTAAG+TGG - chr3.2:53919470-53919489 MS.gene05589:intron 45.0%
GTACTAAACCTACAGTGGTG+GGG + chr3.2:53916899-53916918 None:intergenic 45.0%
GTATACAGTGGCATGTACCT+TGG - chr3.2:53917428-53917447 MS.gene05589:intron 45.0%
TAGCATTTGGCGTCATTTGG+TGG - chr3.2:53917096-53917115 MS.gene05589:intron 45.0%
TCTCTCTCACCGCAATTCAT+TGG + chr3.2:53916729-53916748 None:intergenic 45.0%
TCTTCTCAGGGGATATTGCT+CGG - chr3.2:53919607-53919626 MS.gene05589:intron 45.0%
TGAAACCACATACCTGAGTG+AGG + chr3.2:53916947-53916966 None:intergenic 45.0%
TGAGGAACGAGAAAGTTCGA+TGG + chr3.2:53919375-53919394 None:intergenic 45.0%
TGCAGATTGCTGGTGGAATA+TGG - chr3.2:53917045-53917064 MS.gene05589:intron 45.0%
TGCATTCATGGGAATTGGTG+AGG - chr3.2:53917184-53917203 MS.gene05589:intron 45.0%
TTAGTTGCCCGTGCATTCAT+GGG - chr3.2:53917173-53917192 MS.gene05589:intron 45.0%
TTTGTTCTGGTACGTGACAG+TGG + chr3.2:53915405-53915424 None:intergenic 45.0%
! GAAGAAGAAGAAGGTGATGG+TGG + chr3.2:53915378-53915397 None:intergenic 45.0%
! GGTGATGATGTTGAGGTAGA+AGG - chr3.2:53915585-53915604 MS.gene05589:intron 45.0%
! TACTTGTTGCAGATTGCTGG+TGG - chr3.2:53917038-53917057 MS.gene05589:intron 45.0%
! TCTGTCAAAATGGGTTCCTG+TGG - chr3.2:53917379-53917398 MS.gene05589:intron 45.0%
! TCTTTTCACCGGTCGAGAAA+AGG + chr3.2:53920040-53920059 None:intergenic 45.0%
! TGAAAGATGCACTGCTGCTT+TGG + chr3.2:53919881-53919900 None:intergenic 45.0%
! TTTTCTTCTGGCCGCATTTC+AGG + chr3.2:53917732-53917751 None:intergenic 45.0%
!! TTACTAGGGTGTTGCTATGC+CGG - chr3.2:53917343-53917362 MS.gene05589:intron 45.0%
!!! TAAATTTTTTTTTTTTTTGA+CGG + chr3.2:53918182-53918201 None:intergenic 5.0%
AACCACATACCTGAGTGAGG+AGG + chr3.2:53916944-53916963 None:intergenic 50.0%
AACCTGTTGCTGCTGTTCCA+AGG + chr3.2:53919666-53919685 None:intergenic 50.0%
AATGCGTCAGTTCCCTGTTC+AGG + chr3.2:53919413-53919432 None:intergenic 50.0%
ACACTGATGGCCATCCATAC+TGG + chr3.2:53917493-53917512 None:intergenic 50.0%
ACGGAGAAGGTGAATGGTTG+AGG + chr3.2:53915428-53915447 None:intergenic 50.0%
ACTGACGCATTCTCTCAGTC+TGG - chr3.2:53919422-53919441 MS.gene05589:intron 50.0%
AGCTACGGGAGTTAGGATTG+TGG + chr3.2:53917129-53917148 None:intergenic 50.0%
AGGTGCAATGGAAACGGAGA+AGG + chr3.2:53915441-53915460 None:intergenic 50.0%
ATCCAATACCGCTGGAGTAC+TGG - chr3.2:53919633-53919652 MS.gene05589:intron 50.0%
ATCTGTTACAAGGGTCCGCA+AGG - chr3.2:53918651-53918670 MS.gene05589:intron 50.0%
ATGTACCTTGGATCGGTCAC+CGG - chr3.2:53917440-53917459 MS.gene05589:intron 50.0%
CACAGCAGGTGCAATGGAAA+CGG + chr3.2:53915447-53915466 None:intergenic 50.0%
CAGTGGCATGTACCTTGGAT+CGG - chr3.2:53917433-53917452 MS.gene05589:intron 50.0%
CCACCACAGGAGAATCAATG+TGG + chr3.2:53918825-53918844 None:intergenic 50.0%
CCCGAGGTGTATCTGTTACA+AGG - chr3.2:53918641-53918660 MS.gene05589:intron 50.0%
CGAGAAAAGGTTCCACACCA+CGG + chr3.2:53920027-53920046 None:intergenic 50.0%
CGATGTCAGCAGAGTACAAC+TGG - chr3.2:53916871-53916890 MS.gene05589:intron 50.0%
GAACAAGCTCTTCTCCTTGG+TGG - chr3.2:53915607-53915626 MS.gene05589:intron 50.0%
GATCTACTTCTCTCTGCCAC+AGG + chr3.2:53917398-53917417 None:intergenic 50.0%
GCTATATTTGGTCGGAACCG+TGG - chr3.2:53920007-53920026 MS.gene05589:CDS 50.0%
GGCAAAAGTGGGACACTATC+AGG + chr3.2:53917842-53917861 None:intergenic 50.0%
TAAACAGCTTCTCCTGGACC+AGG + chr3.2:53916086-53916105 None:intergenic 50.0%
TACATGTCTCAGCGTCATGC+CGG - chr3.2:53915876-53915895 MS.gene05589:intron 50.0%
TACCTCCTCACTCAGGTATG+TGG - chr3.2:53916939-53916958 MS.gene05589:intron 50.0%
TCCCCAGTTGTGGCAAAAGT+GGG + chr3.2:53917853-53917872 None:intergenic 50.0%
TGTGTCACCGGAGAGGAAAA+GGG - chr3.2:53915463-53915482 MS.gene05589:intron 50.0%
TTCCCCAGTTGTGGCAAAAG+TGG + chr3.2:53917854-53917873 None:intergenic 50.0%
TTTGTCGAAACCACCGGTCT+GGG - chr3.2:53917815-53917834 MS.gene05589:intron 50.0%
! ACACCTTCCCTTTTCCTCTC+CGG + chr3.2:53915473-53915492 None:intergenic 50.0%
! CCCCAAGGTATTTCCTTCAC+AGG + chr3.2:53917789-53917808 None:intergenic 50.0%
! CGTTTTACCGTGGCTTACGA+TGG - chr3.2:53918573-53918592 MS.gene05589:intron 50.0%
! CTTGTGATGGAAGGTGTGTC+TGG + chr3.2:53915928-53915947 None:intergenic 50.0%
! GAGAGGAAAAGGGAAGGTGT+GGG - chr3.2:53915473-53915492 MS.gene05589:intron 50.0%
! GCTGTGTATGACTTGCAGTC+AGG - chr3.2:53918849-53918868 MS.gene05589:intron 50.0%
! GGAATATGGGCTGACACAGT+GGG - chr3.2:53917059-53917078 MS.gene05589:intron 50.0%
! GTGTGGAACCTTTTCTCGAC+CGG - chr3.2:53920029-53920048 MS.gene05589:CDS 50.0%
! TGGAATATGGGCTGACACAG+TGG - chr3.2:53917058-53917077 MS.gene05589:intron 50.0%
! TTTTGTCGAAACCACCGGTC+TGG - chr3.2:53917814-53917833 MS.gene05589:intron 50.0%
!! CCACATTGATTCTCCTGTGG+TGG - chr3.2:53918822-53918841 MS.gene05589:intron 50.0%
!! GAGCCACATTGATTCTCCTG+TGG - chr3.2:53918819-53918838 MS.gene05589:intron 50.0%
!! GTCCCACTTTTGCCACAACT+GGG - chr3.2:53917848-53917867 MS.gene05589:CDS 50.0%
!! TCCCACTTTTGCCACAACTG+GGG - chr3.2:53917849-53917868 MS.gene05589:CDS 50.0%
!! TGTCCCACTTTTGCCACAAC+TGG - chr3.2:53917847-53917866 MS.gene05589:CDS 50.0%
AACTGGAACCCCACCACTGT+AGG - chr3.2:53916888-53916907 MS.gene05589:intron 55.0%
ACTCCCGTAGCTGCCAAACT+TGG - chr3.2:53917137-53917156 MS.gene05589:intron 55.0%
AGCCAGTACTCCAGCGGTAT+TGG + chr3.2:53919638-53919657 None:intergenic 55.0%
ATACACAGCACAGCCACCAC+AGG + chr3.2:53918838-53918857 None:intergenic 55.0%
ATTTGGTCGGAACCGTGGTG+TGG - chr3.2:53920012-53920031 MS.gene05589:CDS 55.0%
CATTGCACCTGCTGTGTCAC+CGG - chr3.2:53915451-53915470 MS.gene05589:intron 55.0%
CTACGGATGCATCAGAGCCA+TGG + chr3.2:53917017-53917036 None:intergenic 55.0%
CTCGGTCTATCCAATACCGC+TGG - chr3.2:53919625-53919644 MS.gene05589:intron 55.0%
CTGTGTCACCGGAGAGGAAA+AGG - chr3.2:53915462-53915481 MS.gene05589:intron 55.0%
GCCCGTGCATTCATGGGAAT+TGG - chr3.2:53917179-53917198 MS.gene05589:intron 55.0%
GCGGTGAGAGAGAGAACAGA+TGG - chr3.2:53916736-53916755 MS.gene05589:intron 55.0%
GGAGAGGAAAAGGGAAGGTG+TGG - chr3.2:53915472-53915491 MS.gene05589:intron 55.0%
GTCCTTGGAACAGCAGCAAC+AGG - chr3.2:53919661-53919680 MS.gene05589:intron 55.0%
GTGGCGAACTATGAGCCTAC+AGG + chr3.2:53917701-53917720 None:intergenic 55.0%
GTTTGGCAGCTACGGGAGTT+AGG + chr3.2:53917136-53917155 None:intergenic 55.0%
TCACCGGAGAGGAAAAGGGA+AGG - chr3.2:53915467-53915486 MS.gene05589:intron 55.0%
TTGGGGATACCTCCTCACTC+AGG - chr3.2:53916932-53916951 MS.gene05589:intron 55.0%
! ATATGGGCTGACACAGTGGG+AGG - chr3.2:53917062-53917081 MS.gene05589:intron 55.0%
!! AATACCGCTGGAGTACTGGC+TGG - chr3.2:53919637-53919656 MS.gene05589:intron 55.0%
CCAATCCGGTGACCGATCCA+AGG + chr3.2:53917448-53917467 None:intergenic 60.0%
CCTTGGATCGGTCACCGGAT+TGG - chr3.2:53917445-53917464 MS.gene05589:intron 60.0%
CGGTGACACAGCAGGTGCAA+TGG + chr3.2:53915453-53915472 None:intergenic 60.0%
GACACCAGCCAGTACTCCAG+CGG + chr3.2:53919644-53919663 None:intergenic 60.0%
GACACTATCAGGGCCCAGAC+CGG + chr3.2:53917831-53917850 None:intergenic 60.0%
GCAGACACTCTTGTGACCCG+AGG - chr3.2:53918625-53918644 MS.gene05589:intron 60.0%
TTCCTCTCCGGTGACACAGC+AGG + chr3.2:53915461-53915480 None:intergenic 60.0%
! GTCTGAGAAGCATGGGCCAG+AGG - chr3.2:53915506-53915525 MS.gene05589:intron 60.0%
!! GGAGTACTGGCTGGTGTCCT+TGG - chr3.2:53919646-53919665 MS.gene05589:intron 60.0%
ACTATCAGGGCCCAGACCGG+TGG + chr3.2:53917828-53917847 None:intergenic 65.0%
CACCTGCTGTGTCACCGGAG+AGG - chr3.2:53915456-53915475 MS.gene05589:intron 65.0%


Chromosome Type Strat End Strand Name
chr3.2 gene 53915342 53920070 53915342 ID=MS.gene05589
chr3.2 mRNA 53915342 53920070 53915342 ID=MS.gene05589.t1;Parent=MS.gene05589
chr3.2 exon 53919711 53920070 53919711 ID=MS.gene05589.t1.exon1;Parent=MS.gene05589.t1
chr3.2 CDS 53919711 53920070 53919711 ID=cds.MS.gene05589.t1;Parent=MS.gene05589.t1
chr3.2 exon 53918459 53918566 53918459 ID=MS.gene05589.t1.exon2;Parent=MS.gene05589.t1
chr3.2 CDS 53918459 53918566 53918459 ID=cds.MS.gene05589.t1;Parent=MS.gene05589.t1
chr3.2 exon 53918207 53918362 53918207 ID=MS.gene05589.t1.exon3;Parent=MS.gene05589.t1
chr3.2 CDS 53918207 53918362 53918207 ID=cds.MS.gene05589.t1;Parent=MS.gene05589.t1
chr3.2 exon 53917847 53918062 53917847 ID=MS.gene05589.t1.exon4;Parent=MS.gene05589.t1
chr3.2 CDS 53917847 53918062 53917847 ID=cds.MS.gene05589.t1;Parent=MS.gene05589.t1
chr3.2 exon 53917498 53917707 53917498 ID=MS.gene05589.t1.exon5;Parent=MS.gene05589.t1
chr3.2 CDS 53917498 53917707 53917498 ID=cds.MS.gene05589.t1;Parent=MS.gene05589.t1
chr3.2 exon 53916740 53916877 53916740 ID=MS.gene05589.t1.exon6;Parent=MS.gene05589.t1
chr3.2 CDS 53916740 53916877 53916740 ID=cds.MS.gene05589.t1;Parent=MS.gene05589.t1
chr3.2 exon 53916542 53916643 53916542 ID=MS.gene05589.t1.exon7;Parent=MS.gene05589.t1
chr3.2 CDS 53916542 53916643 53916542 ID=cds.MS.gene05589.t1;Parent=MS.gene05589.t1
chr3.2 exon 53915928 53915993 53915928 ID=MS.gene05589.t1.exon8;Parent=MS.gene05589.t1
chr3.2 CDS 53915928 53915993 53915928 ID=cds.MS.gene05589.t1;Parent=MS.gene05589.t1
chr3.2 exon 53915712 53915796 53915712 ID=MS.gene05589.t1.exon9;Parent=MS.gene05589.t1
chr3.2 CDS 53915712 53915796 53915712 ID=cds.MS.gene05589.t1;Parent=MS.gene05589.t1
chr3.2 exon 53915342 53915439 53915342 ID=MS.gene05589.t1.exon10;Parent=MS.gene05589.t1
chr3.2 CDS 53915342 53915439 53915342 ID=cds.MS.gene05589.t1;Parent=MS.gene05589.t1
Gene Sequence

>MS.gene05589

ATGAGTAGCAGAGCTCTACTCTTCTCTTTCTCTCCACCATCACCTTCTTCTTCTTCTTCACCACTGTCACGTACCAGAACAAACCTCAACCATTCACCTTCTCCGTTTCCATTGCACCTGCTGTGTCACCGGAGAGGAAAAGGGAAGGTGTGGGCAGATGTTAAGTCTGAGAAGCATGGGCCAGAGGCATCAAGTAAGTATGAGGATCTTGCAGTTCATAAGAAAGTAGTAAGTGGTTTGGATGGTGATGATGTTGAGGTAGAAGGAACAAGCTCTTCTCCTTGGTGGGAAGTTTTTCCTAAGAGATGGGTTATTGTTATTCTGTGCTTCTCTGCTTTTCTTCTATGTAATATGGATAGAGTGAGTATGCCACTTTTTCAACATCTTATATGAATATATTTAAATTACAAAAAAGTTGGATATTGGATTGTAGCTTTAAATAGCACTTACACATACATGAATACTAGACACAATACTGACATGTAACGTAGATACACTTACTAATTTAGGAAAATCAAAATGATTGAATGTAATTACATGTCTCAGCGTCATGCCGGACTCTAACACTGATATGTGTCAGACACCAGACACACCTTCCATCACAAGTGTTAGCTACCTGGTACATTAGCAACTAACTTACTTTATAGCTAACTGAACAAACTGTAACAACCAACTAACTAACTCATTAAGTTATAATATTAAGTTCTAATACTCTCTCAAACCATGCACATTTAATTTTTACCTGGTCCAGGAGAAGCTGTTTATGTTATTACTCGTATTGTAATTGGCAACTAAAGTGAAATGTAATTGATTAAGGGTATATTCAGATTGACTTATTTGAGCTTATCTACCGGAATAAACACTCATGGTACTTCTTGACATGTTCATAAGCTGTTTTCTGCTTATAGGATAACGGATGAAAACAGTTTATAGCTTATACGGAAATATTTTGACTTTATTTTATCTTCTGTTATAGAATTAGCTTATTCATAAGCTGCAAAATAAGTTGTTTATCCAAATAGGGCCTTAAGCCTAGTTTAGATTAGTTTTTAACCTATGGAAGTTTCTAATTAGAGATAAGCTTTTTATTCTTATTAACTAAGAGGAGAAAAACACTTTTATAAGCTTGCAAGCAGTCTAAGCAAGAGAGTTTTTGAAAAAGTTCAGCTAGTGAACAAGGTTTTACTTTTACATAGCAGTTGTGATTCACAATCCTTCATATTACGGTAAAGTTGCAGTCGTAAGACATAAAAAAACTTGATGTTTTGGAAATAACTGTGGTCAAGAAACTGTTTTTGAAATTCTGGCGAACAAGTTAATTTCAAATTATAAAAAACTTGTTACTTAGAAGATTTATGGCTATGTAATCATAGGGTCCAATACTCCAATGAATTGCGGTGAGAGAGAGAACAGATGGTTGAGTTTGAAAACCTTAGATTGGTATTGCAGTGGTTTCTTCAGCTAGCTTTAGCTCTTAGATACTTTGCTCTTTTCACATTTACAGGTAAATATGAGCATTGCTATACTTCCGATGTCAGCAGAGTACAACTGGAACCCCACCACTGTAGGTTTAGTACAGTCTTCTTTCTTTTGGGGATACCTCCTCACTCAGGTATGTGGTTTCATTTTGATTAGTAACTTTTTGTCTCTTCCCTTAATTTTGAACTTCAAGCCATGGCTCTGATGCATCCGTAGATACTTGTTGCAGATTGCTGGTGGAATATGGGCTGACACAGTGGGAGGAAAGCAAGTTTTAGCATTTGGCGTCATTTGGTGGTCTGTTGCCACAATCCTAACTCCCGTAGCTGCCAAACTTGGATTGCCTTTTCTATTAGTTGCCCGTGCATTCATGGGAATTGGTGAGGTGCGTTCTGTTAAAATGCTCTTTGTTGCACCCGATACTGTCCCTGATATTAGTAATGATTTGATTCGTATAGTTGGTGATGATATGATATGATGTTAGTTTTTTTTTTTCCATGTGAAGCTAACTTCTTTTGGATCTTACTAGGGTGTTGCTATGCCGGCCATGAATAATATTCTGTCAAAATGGGTTCCTGTGGCAGAGAGAAGTAGATCATTAGCTCTGGTATACAGTGGCATGTACCTTGGATCGGTCACCGGATTGGCCTTTTCACCTTTCCTAATTCACCAGTATGGATGGCCATCAGTGTTTTACTCCTTTGGTTCTCTAGGAACAGTTTGGTTTTGTATATGGCTTAGTAAGGTTAGAATTCGAAGACATAAAAATATTACCTTCACATAAATGCTTCCTTTATGAAATATATGTACACGCTTTTTCTCGATAGAAATACTTTTTGTTTCGAATTTGATGCCAATTTTCTGTGTTTTTTCTGTACCTGTAGGCTCATAGTTCGCCACTTGATGATCCTGAAATGCGGCCAGAAGAAAAGAAGTTGATTGCTACAAATGGTTTTTCCAAGGAACCTGTGAAGGAAATACCTTGGGGATTAATTTTGTCGAAACCACCGGTCTGGGCCCTGATAGTGTCCCACTTTTGCCACAACTGGGGAACTTTCATTCTTCTTACATGGATGCCAACATACTATAATCAAGTAAGTTTTTCTTTTTCTTTTGGATTGTTTGCTAAGTATGTTGTTTGGTGTGGACGAAGTTAGATTCATTCTTATATATTTTTTTTCTTTTTATGTCTTACATTGCTGTCTATGAATTTCATTCAATGATAAGCAAATGTACTTTTGGTTGGAACCACAAATTGAAACTATTTCTTTGTTCTTTTGCTGATGCTTTTAGTTTTTACAGTCCAAGGTATTTCTATTAATAAACTCTTGTAATTACACAGAGAATTGATATTAGTACCGTCAAAAAAAAAAAAAATTTATATTAGTACCTCTTTGTTCTTTTGCCGAAAACCTTAGTCTCCCTTTTAGGTTGATTATCTTCTTGTCCATTCTTCTGATTCTATTCGTGAAAATGCCATTGAATTGAGAAATTATCATACCTGATAGTAACATAATCTATTGCTATGAACTAGAAATCATGAAATTTATTTACTCGTCAACATTTGATGTTGTTGATTTCTACATGTGAGAATGCTCACTGATATTAAACATTTTAACCATATTTCTACTTGATTTATTCATCAAGCTTCAAACATTGACAACAAATGACATTGTTAAAGTTAACAAAAATTATTTTCAAATATATATCACAGGTGTTGAAGTTCAATCTTACAGAATCTGGACTATTTTGCGTTTTACCGTGGCTTACGATGGCAATTTCTGCAAATTTTGGTGGTTGGATTGCAGACACTCTTGTGACCCGAGGTGTATCTGTTACAAGGGTCCGCAAGGTATCTCCCTTCAACTTTTTTTTCTTCTCTTTTTTTAGTTTTTCTTGTAGCTTATTCTTGTCAAAATAGTTCTATAGTTCTACGTTTTCTTTGCAGATAATGCAAACAGTTGGGTTTCTTGGCCCTGCTTTCTTCTTAACTCAATTGAGCCACATTGATTCTCCTGTGGTGGCTGTGCTGTGTATGACTTGCAGTCAGGTTTGCTTCTTGTTTTGTATTGGACGTATTTCTTATTCTGATAAAGAGTTCTTCGTATAATCATAACATAAAACCAGTTCTTGTGTGTCTCATCCTTAAATATTTCTGGAGAAAGTGCTACTGATAATGTATTTTTCTAAGTCGCGTTGTCAATTGCGAATAGCAGAAAATAATGGTTTATTGAAGTTACTGTACGCAACAGGGATATAGCGCGTGCGCTATATCTGTTATTAGACAACATTTTGTACTAAATAGCGTATCGCAAAACAAGAGCGATTTGTTCAAATACTTTTAAGTTATATTACTATAGCAGCCACTATTTGACAACATAGTCTCCAAAGTCAGAGTCTTGTAGAATTTTTATTATAGTTTTCAGTTCATACCAGATGCTTCATATTCTGCAACTTTGACAACAAAACTTCTCTTAAGACCGCATTACTATACATTTCTTTGTCGCTTAACATCATCCAAAATTAGTCAGTGTTTGTTCATCCATTAGTTCCATCGAACTTTCTCGTTCCTCACTTGTTTAAATTTTTCCTGAACAGGGAACTGACGCATTCTCTCAGTCTGGATTATATTCAAACCATCAAGATATAGCCCCTAGATATTCTGTAAGTGGATTCATTGTACCTGGAATTTTCAGTACCATTGAATTTTATAATTTCGAAATTCAGAATAAGAATGCAAAAACAGACAAATTGTTTATAAGAATTCTATATTCATTTCCTATATTTCTTCTCAGGGGATATTGCTCGGTCTATCCAATACCGCTGGAGTACTGGCTGGTGTCCTTGGAACAGCAGCAACAGGTTACATTCTGCAGCATGGTAAGTATTTGTTCTTCATATTTATTCTTACTAAATGTTAATGGTCAATTTATCTCGGAAACTTAAAATATTACGTGAAGACATGAATAATTTTATTATATCTCTTTATGGTGAAGAATGAGTGTATATTTCTATTGTCTACAATCTGAAAAGTATCAATTTGGTATTGATAGTTTGCCAAAGCAGCAGTGCATCTTTCACCTAATACTTCGATGAAATCTTATCTTTGAAACAACCATATGACACCATCCATTCTCTTTACTTATTTTCAGGCTCATGGGATGATGTTTTCAAGGTTTCAGTTGGGCTATATTTGGTCGGAACCGTGGTGTGGAACCTTTTCTCGACCGGTGAAAAGATCATAGACTAA
Protein sequence

>MS.gene05589.t1

MSSRALLFSFSPPSPSSSSSPLSRTRTNLNHSPSPFPLHLLCHRRGKGKVWADVKSEKHGPEASSKYEDLAVHKKVVSGLDGDDVEVEGTSSSPWWEVFPKRWVIVILCFSAFLLCNMDRVNMSIAILPMSAEYNWNPTTVGLVQSSFFWGYLLTQIAGGIWADTVGGKQVLAFGVIWWSVATILTPVAAKLGLPFLLVARAFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHQYGWPSVFYSFGSLGTVWFCIWLSKAHSSPLDDPEMRPEEKKLIATNGFSKEPVKEIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAISANFGGWIADTLVTRGVSVTRVRKIMQTVGFLGPAFFLTQLSHIDSPVVAVLCMTCSQGTDAFSQSGLYSNHQDIAPRYSGILLGLSNTAGVLAGVLGTAATGYILQHGSWDDVFKVSVGLYLVGTVVWNLFSTGEKIID