Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene073021.t1 | XP_024633688.1 | 98.5 | 199 | 1 | 1 | 1 | 197 | 1 | 199 | 3.60E-59 | 238 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene073021.t1 | O81127 | 68.3 | 123 | 30 | 1 | 1 | 123 | 1 | 114 | 1.3e-36 | 154.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene073021.t1 | A0A396IYF2 | 98.5 | 199 | 1 | 1 | 1 | 197 | 1 | 199 | 2.6e-59 | 238.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene054733 | MS.gene073021 | 0.807233 | 5.59E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene073021.t1 | MTR_7g112760 | 47.945 | 73 | 32 | 2 | 4 | 70 | 9 | 81 | 4.12e-11 | 60.8 |
| MS.gene073021.t1 | MTR_7g112760 | 47.945 | 73 | 32 | 2 | 4 | 70 | 9 | 81 | 4.24e-11 | 60.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene073021.t1 | AT4G31580 | 63.682 | 201 | 68 | 3 | 1 | 197 | 1 | 200 | 5.29e-63 | 194 |
| MS.gene073021.t1 | AT4G31580 | 63.682 | 201 | 68 | 3 | 1 | 197 | 1 | 200 | 5.29e-63 | 194 |
| MS.gene073021.t1 | AT2G24590 | 68.812 | 202 | 52 | 4 | 1 | 197 | 1 | 196 | 3.87e-57 | 179 |
| MS.gene073021.t1 | AT1G23860 | 59.322 | 177 | 59 | 3 | 1 | 177 | 1 | 164 | 9.46e-46 | 149 |
| MS.gene073021.t1 | AT1G23860 | 59.322 | 177 | 59 | 3 | 1 | 177 | 1 | 164 | 9.46e-46 | 149 |
| MS.gene073021.t1 | AT1G23860 | 61.074 | 149 | 46 | 2 | 1 | 149 | 1 | 137 | 2.67e-45 | 147 |
| MS.gene073021.t1 | AT1G23860 | 61.017 | 177 | 52 | 4 | 1 | 177 | 1 | 160 | 5.62e-44 | 145 |
| MS.gene073021.t1 | AT1G60650 | 37.410 | 139 | 76 | 5 | 2 | 132 | 12 | 147 | 8.48e-15 | 71.2 |
| MS.gene073021.t1 | AT1G60650 | 37.410 | 139 | 76 | 5 | 2 | 132 | 12 | 147 | 8.48e-15 | 71.2 |
| MS.gene073021.t1 | AT3G53500 | 36.774 | 155 | 69 | 4 | 2 | 139 | 11 | 153 | 9.17e-13 | 65.9 |
| MS.gene073021.t1 | AT1G02840 | 49.315 | 73 | 31 | 2 | 4 | 70 | 9 | 81 | 4.25e-12 | 63.9 |
| MS.gene073021.t1 | AT1G02840 | 49.315 | 73 | 31 | 2 | 4 | 70 | 9 | 81 | 6.59e-12 | 63.2 |
| MS.gene073021.t1 | AT1G02840 | 49.315 | 73 | 31 | 2 | 4 | 70 | 9 | 81 | 6.59e-12 | 63.2 |
| MS.gene073021.t1 | AT1G02840 | 49.315 | 73 | 31 | 2 | 4 | 70 | 9 | 81 | 6.59e-12 | 63.2 |
| MS.gene073021.t1 | AT2G37340 | 36.111 | 144 | 73 | 4 | 2 | 134 | 11 | 146 | 8.51e-12 | 63.2 |
| MS.gene073021.t1 | AT1G02840 | 49.315 | 73 | 31 | 2 | 4 | 70 | 9 | 81 | 2.09e-11 | 62.0 |
Find 72 sgRNAs with CRISPR-Local
Find 193 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACGATGACTCGCGTGTATAT+TGG | 0.307783 | 3.4:-94366653 | MS.gene073021:CDS |
| GGTGGTCGTGGTCGGTCTGG+TGG | 0.349220 | 3.4:-94365309 | MS.gene073021:CDS |
| TCTCACCTTCGCCCGTAACT+TGG | 0.357635 | 3.4:+94365162 | None:intergenic |
| GGCAGAGGTGGTGGTGGCGG+TGG | 0.364147 | 3.4:-94365327 | MS.gene073021:CDS |
| TAGCTGCGCCGGCGAGGTGA+AGG | 0.367458 | 3.4:+94364838 | None:intergenic |
| GGAGGCAGAGGTGGTGGTGG+CGG | 0.377477 | 3.4:-94365330 | MS.gene073021:CDS |
| CTTTCCCACAACTCTAAAAC+TGG | 0.379511 | 3.4:-94365363 | MS.gene073021:CDS |
| GATGCTATTCGTGAATTAGA+TGG | 0.383511 | 3.4:-94366293 | MS.gene073021:intron |
| TTCGCAGGAGCCCAAGTTAC+GGG | 0.384074 | 3.4:-94365173 | MS.gene073021:CDS |
| GTGGTCGTGGTCGGTCTGGT+GGG | 0.410108 | 3.4:-94365308 | MS.gene073021:CDS |
| GGCGGTGGTCGTGGTCGGTC+TGG | 0.411463 | 3.4:-94365312 | MS.gene073021:CDS |
| AATTCTGCTCGTGGTGGCTC+TGG | 0.418353 | 3.4:-94365225 | MS.gene073021:CDS |
| TGGTCGTGGTCGGTCTGGTG+GGG | 0.424575 | 3.4:-94365307 | MS.gene073021:CDS |
| GGTGGTGGTGGCGGTGGTCG+TGG | 0.429629 | 3.4:-94365321 | MS.gene073021:CDS |
| GGTCGTGGTCGGTCTGGTGG+GGG | 0.446312 | 3.4:-94365306 | MS.gene073021:CDS |
| AACTCTAAAACTGGAGGTGG+AGG | 0.458462 | 3.4:-94365354 | MS.gene073021:CDS |
| TATTGTGCAGAAATGGGATA+AGG | 0.462679 | 3.4:-94364136 | MS.gene073021:intron |
| TCTAAAACTGGAGGTGGAGG+GGG | 0.464202 | 3.4:-94365351 | MS.gene073021:CDS |
| CTCGCCGGCGCAGCTATAGC+AGG | 0.468322 | 3.4:-94364831 | MS.gene073021:CDS |
| GGAGAAGGGCTGCGCCGCCT+AGG | 0.468912 | 3.4:+94364874 | None:intergenic |
| GGGCTGCGTCGACGAGGAGA+AGG | 0.481064 | 3.4:+94364859 | None:intergenic |
| CTCTAAAACTGGAGGTGGAG+GGG | 0.483831 | 3.4:-94365352 | MS.gene073021:CDS |
| GAGAAGGGCTGCGCCGCCTA+GGG | 0.490409 | 3.4:+94364875 | None:intergenic |
| TTTCGCAGGAGCCCAAGTTA+CGG | 0.496285 | 3.4:-94365174 | MS.gene073021:CDS |
| GTGGTGGCGGTGGTCGTGGT+CGG | 0.497625 | 3.4:-94365317 | MS.gene073021:CDS |
| AGCTGCGCCGGCGAGGTGAA+GGG | 0.502004 | 3.4:+94364839 | None:intergenic |
| TGTGTAGTGTGTGGGTTGCA+AGG | 0.503459 | 3.4:-94366367 | MS.gene073021:intron |
| AGGACGCAACACATGCTAAC+GGG | 0.506967 | 3.4:-94364783 | MS.gene073021:intron |
| CTCACCTTCGCCCGTAACTT+GGG | 0.507223 | 3.4:+94365163 | None:intergenic |
| GCGTCCTCACGCCCACGGTA+AGG | 0.515675 | 3.4:+94364799 | None:intergenic |
| TGGGTTGCAAGGAGGCCTCC+TGG | 0.516078 | 3.4:-94366356 | MS.gene073021:CDS |
| TCACGCCCACGGTAAGGAGG+TGG | 0.520429 | 3.4:+94364805 | None:intergenic |
| ACTTTGTTTGTGTAGTGTGT+GGG | 0.522844 | 3.4:-94366375 | MS.gene073021:intron |
| ATTGTGCAGAAATGGGATAA+GGG | 0.534103 | 3.4:-94364135 | MS.gene073021:intron |
| GACGCAGCCCTTCACCTCGC+CGG | 0.537207 | 3.4:-94364846 | MS.gene073021:CDS |
| CTGCTATAGCTGCGCCGGCG+AGG | 0.541512 | 3.4:+94364832 | None:intergenic |
| GGAGCCCAAGTTACGGGCGA+AGG | 0.545836 | 3.4:-94365167 | MS.gene073021:intron |
| TGTTATGAGTGTGGTGAACC+TGG | 0.547859 | 3.4:-94365267 | MS.gene073021:CDS |
| CACAACTCTAAAACTGGAGG+TGG | 0.548485 | 3.4:-94365357 | MS.gene073021:CDS |
| CGATTCAAGAATTTCTGAGA+GGG | 0.558673 | 3.4:-94366624 | MS.gene073021:CDS |
| CACTCGCGGGCAAAATGACC+AGG | 0.560672 | 3.4:+94365249 | None:intergenic |
| ACTCTAAAACTGGAGGTGGA+GGG | 0.564564 | 3.4:-94365353 | MS.gene073021:CDS |
| CGCCTAGGGGACCGCTCACG+AGG | 0.564913 | 3.4:+94364889 | None:intergenic |
| GCAGTCCACCTCGATTTCGC+AGG | 0.566410 | 3.4:-94365188 | MS.gene073021:CDS |
| AGGTCTCCACCTCCTTACCG+TGG | 0.587331 | 3.4:-94364811 | MS.gene073021:CDS |
| CTTGGGCTCCTGCGAAATCG+AGG | 0.592257 | 3.4:+94365180 | None:intergenic |
| ACCTCCTTACCGTGGGCGTG+AGG | 0.592569 | 3.4:-94364803 | MS.gene073021:CDS |
| GTCCTCGTGAGCGGTCCCCT+AGG | 0.592782 | 3.4:-94364891 | MS.gene073021:CDS |
| GATTTGAAATGTTATGAGTG+TGG | 0.599192 | 3.4:-94365276 | MS.gene073021:CDS |
| GTGTTGCGTCCTCACGCCCA+CGG | 0.604856 | 3.4:+94364794 | None:intergenic |
| GGTCTCCACCTCCTTACCGT+GGG | 0.606921 | 3.4:-94364810 | MS.gene073021:CDS |
| GGCTGCGTCGACGAGGAGAA+GGG | 0.610874 | 3.4:+94364860 | None:intergenic |
| CGCGAGTGTAATTCTGCTCG+TGG | 0.617749 | 3.4:-94365234 | MS.gene073021:CDS |
| GAGACCTGCTATAGCTGCGC+CGG | 0.618605 | 3.4:+94364827 | None:intergenic |
| TCCTCACGCCCACGGTAAGG+AGG | 0.620057 | 3.4:+94364802 | None:intergenic |
| CTCGTGAGCGGTCCCCTAGG+CGG | 0.627799 | 3.4:-94364888 | MS.gene073021:CDS |
| AGAAGGGCTGCGCCGCCTAG+GGG | 0.629702 | 3.4:+94364876 | None:intergenic |
| AAGTCAATGAAAGCATAACC+AGG | 0.643089 | 3.4:+94366338 | None:intergenic |
| ACGAGCAGAATTACACTCGC+GGG | 0.643217 | 3.4:+94365236 | None:intergenic |
| GAGGACGCAACACATGCTAA+CGG | 0.645717 | 3.4:-94364784 | MS.gene073021:CDS |
| TGCGAAATCGAGGTGGACTG+CGG | 0.647083 | 3.4:+94365190 | None:intergenic |
| GGGCTCCTGCGAAATCGAGG+TGG | 0.659354 | 3.4:+94365183 | None:intergenic |
| GAGTGTAATTCTGCTCGTGG+TGG | 0.660472 | 3.4:-94365231 | MS.gene073021:CDS |
| GGAGTTACAGTCCTCGTGAG+CGG | 0.667864 | 3.4:-94364900 | MS.gene073021:CDS |
| TCCCACAACTCTAAAACTGG+AGG | 0.668821 | 3.4:-94365360 | MS.gene073021:CDS |
| GGTGAAGGGCTGCGTCGACG+AGG | 0.671374 | 3.4:+94364853 | None:intergenic |
| CACGAGCAGAATTACACTCG+CGG | 0.671886 | 3.4:+94365235 | None:intergenic |
| TCGATTCAAGAATTTCTGAG+AGG | 0.687611 | 3.4:-94366625 | MS.gene073021:CDS |
| GTGGTGGCTCTGGAAGACGT+CGG | 0.689675 | 3.4:-94365215 | MS.gene073021:CDS |
| TAGCATCAAGCGCATCTCTG+CGG | 0.691801 | 3.4:+94366309 | None:intergenic |
| TCAATGAAAGCATAACCAGG+AGG | 0.752656 | 3.4:+94366341 | None:intergenic |
| GTAGTGTGTGGGTTGCAAGG+AGG | 0.756764 | 3.4:-94366364 | MS.gene073021:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAATAAAAATAAAAATAA+AGG | + | chr3.4:94365729-94365748 | None:intergenic | 0.0% |
| !!! | TAAATAATATTATAAAATTT+TGG | + | chr3.4:94365053-94365072 | None:intergenic | 0.0% |
| !!! | TATTTTTATTTTTATTTATT+GGG | - | chr3.4:94365730-94365749 | MS.gene073021:intron | 0.0% |
| !!! | TTATTTTTATTTTTATTTAT+TGG | - | chr3.4:94365729-94365748 | MS.gene073021:intron | 0.0% |
| !! | AAGTTCAAAAATTTAAATTA+TGG | + | chr3.4:94364371-94364390 | None:intergenic | 10.0% |
| !! | TTATTATAGAATTCAAAATT+TGG | + | chr3.4:94366567-94366586 | None:intergenic | 10.0% |
| !!! | TCATTTTTTTTTTTTAACTT+TGG | + | chr3.4:94365699-94365718 | None:intergenic | 10.0% |
| !! | ACATATCATATAAAATGTTA+AGG | - | chr3.4:94365086-94365105 | MS.gene073021:intron | 15.0% |
| !! | ATTTGGAAATTCAAATAATT+TGG | + | chr3.4:94366550-94366569 | None:intergenic | 15.0% |
| !! | CATATCATATAAAATGTTAA+GGG | - | chr3.4:94365087-94365106 | MS.gene073021:intron | 15.0% |
| !! | GAAAAAAGTAAATCAAAATA+AGG | + | chr3.4:94364655-94364674 | None:intergenic | 15.0% |
| !! | GAAAATTATGTTCAAATTAA+TGG | - | chr3.4:94364314-94364333 | MS.gene073021:intron | 15.0% |
| !! | TTCTATACTAAATTAAAGTA+AGG | + | chr3.4:94365023-94365042 | None:intergenic | 15.0% |
| !!! | AACATTTTCATAATTTCATT+CGG | + | chr3.4:94364854-94364873 | None:intergenic | 15.0% |
| !!! | ATGTTTATTTTTCAACTTTA+AGG | - | chr3.4:94366454-94366473 | MS.gene073021:intron | 15.0% |
| !!! | TTTGTTTCAATTCTAAAATA+TGG | - | chr3.4:94365254-94365273 | MS.gene073021:CDS | 15.0% |
| !! | AGTTTATACATAAAATCTTC+TGG | + | chr3.4:94364930-94364949 | None:intergenic | 20.0% |
| !! | ATTCAAAAATCCAATTGAAT+TGG | + | chr3.4:94364285-94364304 | None:intergenic | 20.0% |
| !! | TCCATAGAAGAAAAATTAAA+AGG | + | chr3.4:94365352-94365371 | None:intergenic | 20.0% |
| !! | TTCAAAAATCCAATTGAATT+GGG | + | chr3.4:94364284-94364303 | None:intergenic | 20.0% |
| !!! | AGAAAATACAAGTTTAAAAC+AGG | + | chr3.4:94366055-94366074 | None:intergenic | 20.0% |
| !!! | AGAAGATTTTATGTATAAAC+TGG | - | chr3.4:94364929-94364948 | MS.gene073021:intron | 20.0% |
| !!! | ATCAATTACTGAGAAAATTT+TGG | + | chr3.4:94364551-94364570 | None:intergenic | 20.0% |
| !!! | TTCAATTCTAAAATATGGAT+TGG | - | chr3.4:94365259-94365278 | MS.gene073021:CDS | 20.0% |
| !!! | TTCACAATCTCAATTATTTT+TGG | - | chr3.4:94365149-94365168 | MS.gene073021:intron | 20.0% |
| ! | AGTACAAATGATAGTTTAAC+AGG | + | chr3.4:94364345-94364364 | None:intergenic | 25.0% |
| ! | TAAAAGACTTCTACAAAACA+AGG | + | chr3.4:94366152-94366171 | None:intergenic | 25.0% |
| ! | TTATTGAAATCGATGTATAC+CGG | - | chr3.4:94365180-94365199 | MS.gene073021:CDS | 25.0% |
| !! | ACACAAGATTTTTGTAAAGA+GGG | + | chr3.4:94366321-94366340 | None:intergenic | 25.0% |
| !! | ATTTGAGAAATGCAACATTT+TGG | + | chr3.4:94366224-94366243 | None:intergenic | 25.0% |
| !! | TACACAAGATTTTTGTAAAG+AGG | + | chr3.4:94366322-94366341 | None:intergenic | 25.0% |
| !! | TCTTTTATATTGTGTCTGAT+AGG | - | chr3.4:94366165-94366184 | MS.gene073021:intron | 25.0% |
| !! | TTGTGTATGCTCTAAATTTA+TGG | - | chr3.4:94366335-94366354 | MS.gene073021:CDS | 25.0% |
| !! | TTTTGTGTTTAATCTGTTTC+TGG | - | chr3.4:94364597-94364616 | MS.gene073021:intron | 25.0% |
| !!! | GCCTTTTAATTTTTCTTCTA+TGG | - | chr3.4:94365348-94365367 | MS.gene073021:CDS | 25.0% |
| !!! | TAACGTACTTTTTCACTATT+TGG | - | chr3.4:94365769-94365788 | MS.gene073021:intron | 25.0% |
| AAACATTACACTGGTCAAAA+TGG | + | chr3.4:94364506-94364525 | None:intergenic | 30.0% | |
| AATTCAAATAATTTGGCACG+AGG | + | chr3.4:94366543-94366562 | None:intergenic | 30.0% | |
| ATCATACTTCCCAATTCAAT+TGG | - | chr3.4:94364272-94364291 | MS.gene073021:intron | 30.0% | |
| ATTCAAATAATTTGGCACGA+GGG | + | chr3.4:94366542-94366561 | None:intergenic | 30.0% | |
| TTCGTATAACTCCAAAAACA+TGG | + | chr3.4:94364180-94364199 | None:intergenic | 30.0% | |
| TTTATCTTGGTATCACTAGA+TGG | - | chr3.4:94366026-94366045 | MS.gene073021:intron | 30.0% | |
| ! | AAAAGGCACAGTAAATAGTA+GGG | + | chr3.4:94365335-94365354 | None:intergenic | 30.0% |
| ! | ACCAGTGTAATGTTTTACAA+TGG | - | chr3.4:94364511-94364530 | MS.gene073021:intron | 30.0% |
| ! | GAAGATGATTTCCATGTTTT+TGG | - | chr3.4:94364166-94364185 | MS.gene073021:intron | 30.0% |
| ! | GATTTGAAATGTTATGAGTG+TGG | - | chr3.4:94365486-94365505 | MS.gene073021:intron | 30.0% |
| ! | TAAAAGGCACAGTAAATAGT+AGG | + | chr3.4:94365336-94365355 | None:intergenic | 30.0% |
| ! | TAATTTTTCTTCTATGGAGC+AGG | - | chr3.4:94365354-94365373 | MS.gene073021:CDS | 30.0% |
| ! | TAGTGAAAAAGTACGTTACT+CGG | + | chr3.4:94365767-94365786 | None:intergenic | 30.0% |
| ! | TGCTTTATTCTGATGCTATT+GGG | - | chr3.4:94365624-94365643 | MS.gene073021:intron | 30.0% |
| ! | TTGCTTTATTCTGATGCTAT+TGG | - | chr3.4:94365623-94365642 | MS.gene073021:intron | 30.0% |
| ! | TTGGGAAGTATGATATTACT+TGG | + | chr3.4:94364266-94364285 | None:intergenic | 30.0% |
| ! | TTTTGTAAAGAGGGAACAAA+AGG | + | chr3.4:94366312-94366331 | None:intergenic | 30.0% |
| !!! | AGTGTGCTTTATTTTTTGCT+AGG | - | chr3.4:94365223-94365242 | MS.gene073021:CDS | 30.0% |
| !!! | ATGTTTTTGGAGTTATACGA+AGG | - | chr3.4:94364179-94364198 | MS.gene073021:intron | 30.0% |
| ACCTTTAATTGAAATGCACC+AGG | - | chr3.4:94365841-94365860 | MS.gene073021:intron | 35.0% | |
| AGCACACTAATGAAATCGTA+TGG | + | chr3.4:94365211-94365230 | None:intergenic | 35.0% | |
| AGTGATACCAAGATAAATCC+AGG | + | chr3.4:94366023-94366042 | None:intergenic | 35.0% | |
| AGTTGTCACAACATGACTTA+TGG | + | chr3.4:94366481-94366500 | None:intergenic | 35.0% | |
| ATCCTTCCACTCTATTCAAT+AGG | - | chr3.4:94365285-94365304 | MS.gene073021:CDS | 35.0% | |
| ATCGAACATGCAAATCTTCT+AGG | + | chr3.4:94366421-94366440 | None:intergenic | 35.0% | |
| ATGTCCATATTGTGCAGAAA+TGG | - | chr3.4:94366619-94366638 | MS.gene073021:CDS | 35.0% | |
| ATTGTGCAGAAATGGGATAA+GGG | - | chr3.4:94366627-94366646 | MS.gene073021:CDS | 35.0% | |
| GATGCTATTCGTGAATTAGA+TGG | - | chr3.4:94364469-94364488 | MS.gene073021:intron | 35.0% | |
| GCCATTGTAAAACATTACAC+TGG | + | chr3.4:94364515-94364534 | None:intergenic | 35.0% | |
| TATCCCATTTCTGCACAATA+TGG | + | chr3.4:94366626-94366645 | None:intergenic | 35.0% | |
| TATTGAACTGGATCTATGAC+CGG | - | chr3.4:94364790-94364809 | MS.gene073021:CDS | 35.0% | |
| TATTGTGCAGAAATGGGATA+AGG | - | chr3.4:94366626-94366645 | MS.gene073021:CDS | 35.0% | |
| TCAGTGATGAGTAGAAGAAA+GGG | + | chr3.4:94364716-94364735 | None:intergenic | 35.0% | |
| TCCTGGTGCATTTCAATTAA+AGG | + | chr3.4:94365845-94365864 | None:intergenic | 35.0% | |
| TCCTTCCACTCTATTCAATA+GGG | - | chr3.4:94365286-94365305 | MS.gene073021:CDS | 35.0% | |
| TCGATTCAAGAATTTCTGAG+AGG | - | chr3.4:94364137-94364156 | MS.gene073021:intron | 35.0% | |
| TGACCTAATTCACTGTAATG+CGG | + | chr3.4:94364243-94364262 | None:intergenic | 35.0% | |
| TGGATGTGTTGAATTTGAAG+AGG | - | chr3.4:94364620-94364639 | MS.gene073021:intron | 35.0% | |
| TGTCCATATTGTGCAGAAAT+GGG | - | chr3.4:94366620-94366639 | MS.gene073021:CDS | 35.0% | |
| TTACATAGAGTTTGATGCTC+TGG | - | chr3.4:94366270-94366289 | MS.gene073021:intron | 35.0% | |
| TTCTATGGAGCAGGTAAAAA+TGG | - | chr3.4:94365363-94365382 | MS.gene073021:CDS | 35.0% | |
| ! | AACTTTGTTTGTGTAGTGTG+TGG | - | chr3.4:94364386-94364405 | MS.gene073021:intron | 35.0% |
| ! | AAGTCAATGAAAGCATAACC+AGG | + | chr3.4:94364427-94364446 | None:intergenic | 35.0% |
| ! | ACTTTGTTTGTGTAGTGTGT+GGG | - | chr3.4:94364387-94364406 | MS.gene073021:intron | 35.0% |
| ! | CGATTCAAGAATTTCTGAGA+GGG | - | chr3.4:94364138-94364157 | MS.gene073021:intron | 35.0% |
| ! | TATTTTCCATTCATCTGTGC+TGG | + | chr3.4:94366388-94366407 | None:intergenic | 35.0% |
| !! | TGTGTTTAATCTGTTTCTGG+TGG | - | chr3.4:94364600-94364619 | MS.gene073021:intron | 35.0% |
| !!! | CGTACTTTTTCACTATTTGG+TGG | - | chr3.4:94365772-94365791 | MS.gene073021:intron | 35.0% |
| AGCAGGTAAAAATGGTTGGA+GGG | - | chr3.4:94365371-94365390 | MS.gene073021:CDS | 40.0% | |
| ATGAAATCGTATGGCTGAAC+CGG | + | chr3.4:94365202-94365221 | None:intergenic | 40.0% | |
| ATGGAGCAGGTAAAAATGGT+TGG | - | chr3.4:94365367-94365386 | MS.gene073021:CDS | 40.0% | |
| CAATATGTACAAGAGAGCAG+TGG | + | chr3.4:94364985-94365004 | None:intergenic | 40.0% | |
| CATAAAATCTTCTGGCACAG+TGG | + | chr3.4:94364922-94364941 | None:intergenic | 40.0% | |
| CTACTCATCACTGAGAAAAC+CGG | - | chr3.4:94364722-94364741 | MS.gene073021:intron | 40.0% | |
| CTCAGTGATGAGTAGAAGAA+AGG | + | chr3.4:94364717-94364736 | None:intergenic | 40.0% | |
| GATCAAACTGGTTATAGGTC+CGG | + | chr3.4:94364749-94364768 | None:intergenic | 40.0% | |
| GATTGGAGATGCTATTGAAC+TGG | - | chr3.4:94364778-94364797 | MS.gene073021:intron | 40.0% | |
| TAAAGAGGGAACAAAAGGAG+AGG | + | chr3.4:94366307-94366326 | None:intergenic | 40.0% | |
| TCCCTATTGAATAGAGTGGA+AGG | + | chr3.4:94365290-94365309 | None:intergenic | 40.0% | |
| TCTCCGCATTACAGTGAATT+AGG | - | chr3.4:94364237-94364256 | MS.gene073021:intron | 40.0% | |
| TTCCACTCTATTCAATAGGG+AGG | - | chr3.4:94365289-94365308 | MS.gene073021:CDS | 40.0% | |
| ! | TCAATGAAAGCATAACCAGG+AGG | + | chr3.4:94364424-94364443 | None:intergenic | 40.0% |
| ! | TTCTCTGCTGAAGTGTTCTT+AGG | - | chr3.4:94366247-94366266 | MS.gene073021:intron | 40.0% |
| !! | CTTTCCCACAACTCTAAAAC+TGG | - | chr3.4:94365399-94365418 | MS.gene073021:intron | 40.0% |
| !! | TATTCAATAGGGAGGCACTT+GGG | - | chr3.4:94365297-94365316 | MS.gene073021:CDS | 40.0% |
| !!! | ACCTCCAGTTTTAGAGTTGT+GGG | + | chr3.4:94365406-94365425 | None:intergenic | 40.0% |
| AACTGGATCTATGACCGGTT+TGG | - | chr3.4:94364795-94364814 | MS.gene073021:CDS | 45.0% | |
| ATCTGATGCGCAGATCAAAC+TGG | + | chr3.4:94364761-94364780 | None:intergenic | 45.0% | |
| CTCTCTGCCTGGATTTATCT+TGG | - | chr3.4:94366013-94366032 | MS.gene073021:intron | 45.0% | |
| CTGTTACCAGCACAGATGAA+TGG | - | chr3.4:94366379-94366398 | MS.gene073021:intron | 45.0% | |
| GAGCAGGTAAAAATGGTTGG+AGG | - | chr3.4:94365370-94365389 | MS.gene073021:CDS | 45.0% | |
| GCGCAGATCAAACTGGTTAT+AGG | + | chr3.4:94364754-94364773 | None:intergenic | 45.0% | |
| GCTATTGGGACTTCTGTACA+TGG | - | chr3.4:94365638-94365657 | MS.gene073021:intron | 45.0% | |
| GTTTGATCTGCGCATCAGAT+TGG | - | chr3.4:94364761-94364780 | MS.gene073021:intron | 45.0% | |
| TGCCTCCCTATTGAATAGAG+TGG | + | chr3.4:94365294-94365313 | None:intergenic | 45.0% | |
| TGTTATGAGTGTGGTGAACC+TGG | - | chr3.4:94365495-94365514 | MS.gene073021:intron | 45.0% | |
| TTAGGTTCTATCTCTCTGCC+TGG | - | chr3.4:94366002-94366021 | MS.gene073021:intron | 45.0% | |
| !! | AACTCTAAAACTGGAGGTGG+AGG | - | chr3.4:94365408-94365427 | MS.gene073021:intron | 45.0% |
| !! | ACTCTAAAACTGGAGGTGGA+GGG | - | chr3.4:94365409-94365428 | MS.gene073021:intron | 45.0% |
| !! | CACAACTCTAAAACTGGAGG+TGG | - | chr3.4:94365405-94365424 | MS.gene073021:intron | 45.0% |
| !! | CTATTCAATAGGGAGGCACT+TGG | - | chr3.4:94365296-94365315 | MS.gene073021:CDS | 45.0% |
| !! | TCCCACAACTCTAAAACTGG+AGG | - | chr3.4:94365402-94365421 | MS.gene073021:intron | 45.0% |
| !!! | CACCTCCAGTTTTAGAGTTG+TGG | + | chr3.4:94365407-94365426 | None:intergenic | 45.0% |
| AACTGGTTATAGGTCCGGAC+CGG | + | chr3.4:94364744-94364763 | None:intergenic | 50.0% | |
| ACGAGCAGAATTACACTCGC+GGG | + | chr3.4:94365529-94365548 | None:intergenic | 50.0% | |
| AGAGGGAACAAAAGGAGAGG+AGG | + | chr3.4:94366304-94366323 | None:intergenic | 50.0% | |
| AGGACGCAACACATGCTAAC+GGG | - | chr3.4:94365979-94365998 | MS.gene073021:intron | 50.0% | |
| CACGAGCAGAATTACACTCG+CGG | + | chr3.4:94365530-94365549 | None:intergenic | 50.0% | |
| CATCACTGAGAAAACCGGTC+CGG | - | chr3.4:94364727-94364746 | MS.gene073021:intron | 50.0% | |
| GAGGACGCAACACATGCTAA+CGG | - | chr3.4:94365978-94365997 | MS.gene073021:intron | 50.0% | |
| GAGGGAACAAAAGGAGAGGA+GGG | + | chr3.4:94366303-94366322 | None:intergenic | 50.0% | |
| GAGTGTAATTCTGCTCGTGG+TGG | - | chr3.4:94365531-94365550 | MS.gene073021:intron | 50.0% | |
| TAGCATCAAGCGCATCTCTG+CGG | + | chr3.4:94364456-94364475 | None:intergenic | 50.0% | |
| TTTCGCAGGAGCCCAAGTTA+CGG | - | chr3.4:94365588-94365607 | MS.gene073021:intron | 50.0% | |
| ! | TCTAAAACTGGAGGTGGAGG+GGG | - | chr3.4:94365411-94365430 | MS.gene073021:intron | 50.0% |
| ! | TGTGTAGTGTGTGGGTTGCA+AGG | - | chr3.4:94364395-94364414 | MS.gene073021:intron | 50.0% |
| !! | CTCTAAAACTGGAGGTGGAG+GGG | - | chr3.4:94365410-94365429 | MS.gene073021:intron | 50.0% |
| !! | GATCTATGACCGGTTTGGTG+GGG | - | chr3.4:94364800-94364819 | MS.gene073021:CDS | 50.0% |
| !! | GCAACACATGCTAACGGGTT+AGG | - | chr3.4:94365984-94366003 | MS.gene073021:intron | 50.0% |
| !! | GGATCTATGACCGGTTTGGT+GGG | - | chr3.4:94364799-94364818 | MS.gene073021:CDS | 50.0% |
| !! | TGGATCTATGACCGGTTTGG+TGG | - | chr3.4:94364798-94364817 | MS.gene073021:CDS | 50.0% |
| AATTCTGCTCGTGGTGGCTC+TGG | - | chr3.4:94365537-94365556 | MS.gene073021:intron | 55.0% | |
| ACAGCTGAACCCCACCAAAC+CGG | + | chr3.4:94364812-94364831 | None:intergenic | 55.0% | |
| CGCGAGTGTAATTCTGCTCG+TGG | - | chr3.4:94365528-94365547 | MS.gene073021:intron | 55.0% | |
| CTCACCTTCGCCCGTAACTT+GGG | + | chr3.4:94365602-94365621 | None:intergenic | 55.0% | |
| CTCACGAGGACTGTAACTCC+TGG | + | chr3.4:94365862-94365881 | None:intergenic | 55.0% | |
| GGAGTTACAGTCCTCGTGAG+CGG | - | chr3.4:94365862-94365881 | MS.gene073021:intron | 55.0% | |
| TCTCACCTTCGCCCGTAACT+TGG | + | chr3.4:94365603-94365622 | None:intergenic | 55.0% | |
| TTCGCAGGAGCCCAAGTTAC+GGG | - | chr3.4:94365589-94365608 | MS.gene073021:intron | 55.0% | |
| ! | GTAGTGTGTGGGTTGCAAGG+AGG | - | chr3.4:94364398-94364417 | MS.gene073021:intron | 55.0% |
| !! | TGCGAAATCGAGGTGGACTG+CGG | + | chr3.4:94365575-94365594 | None:intergenic | 55.0% |
| AAAACTGGAGGTGGAGGGGG+AGG | - | chr3.4:94365414-94365433 | MS.gene073021:intron | 60.0% | |
| AGGTCTCCACCTCCTTACCG+TGG | - | chr3.4:94365951-94365970 | MS.gene073021:intron | 60.0% | |
| CACTCGCGGGCAAAATGACC+AGG | + | chr3.4:94365516-94365535 | None:intergenic | 60.0% | |
| CGAGGGTTGCAGAGCGATCT+CGG | + | chr3.4:94366525-94366544 | None:intergenic | 60.0% | |
| CTTGGGCTCCTGCGAAATCG+AGG | + | chr3.4:94365585-94365604 | None:intergenic | 60.0% | |
| GAGACCTGCTATAGCTGCGC+CGG | + | chr3.4:94365938-94365957 | None:intergenic | 60.0% | |
| GCAGTCCACCTCGATTTCGC+AGG | - | chr3.4:94365574-94365593 | MS.gene073021:intron | 60.0% | |
| GGTCTCCACCTCCTTACCGT+GGG | - | chr3.4:94365952-94365971 | MS.gene073021:intron | 60.0% | |
| !! | GTGGTGGCTCTGGAAGACGT+CGG | - | chr3.4:94365547-94365566 | MS.gene073021:intron | 60.0% |
| ACCTCCTTACCGTGGGCGTG+AGG | - | chr3.4:94365959-94365978 | MS.gene073021:intron | 65.0% | |
| GCGATCTCGGTTGCGACAGC+AGG | + | chr3.4:94366512-94366531 | None:intergenic | 65.0% | |
| GGAGCCCAAGTTACGGGCGA+AGG | - | chr3.4:94365595-94365614 | MS.gene073021:intron | 65.0% | |
| GGGCTCCTGCGAAATCGAGG+TGG | + | chr3.4:94365582-94365601 | None:intergenic | 65.0% | |
| GTGGTCGTGGTCGGTCTGGT+GGG | - | chr3.4:94365454-94365473 | MS.gene073021:intron | 65.0% | |
| GTGTTGCGTCCTCACGCCCA+CGG | + | chr3.4:94365971-94365990 | None:intergenic | 65.0% | |
| TCACGCCCACGGTAAGGAGG+TGG | + | chr3.4:94365960-94365979 | None:intergenic | 65.0% | |
| TCCTCACGCCCACGGTAAGG+AGG | + | chr3.4:94365963-94365982 | None:intergenic | 65.0% | |
| TGGGTTGCAAGGAGGCCTCC+TGG | - | chr3.4:94364406-94364425 | MS.gene073021:intron | 65.0% | |
| TGGTCGTGGTCGGTCTGGTG+GGG | - | chr3.4:94365455-94365474 | MS.gene073021:intron | 65.0% | |
| ! | GGCTGCGTCGACGAGGAGAA+GGG | + | chr3.4:94365905-94365924 | None:intergenic | 65.0% |
| AGAAGGGCTGCGCCGCCTAG+GGG | + | chr3.4:94365889-94365908 | None:intergenic | 70.0% | |
| CTCGCCGGCGCAGCTATAGC+AGG | - | chr3.4:94365931-94365950 | MS.gene073021:intron | 70.0% | |
| CTCGTGAGCGGTCCCCTAGG+CGG | - | chr3.4:94365874-94365893 | MS.gene073021:intron | 70.0% | |
| GACGCAGCCCTTCACCTCGC+CGG | - | chr3.4:94365916-94365935 | MS.gene073021:intron | 70.0% | |
| GAGAAGGGCTGCGCCGCCTA+GGG | + | chr3.4:94365890-94365909 | None:intergenic | 70.0% | |
| GCGTCCTCACGCCCACGGTA+AGG | + | chr3.4:94365966-94365985 | None:intergenic | 70.0% | |
| GGTCGTGGTCGGTCTGGTGG+GGG | - | chr3.4:94365456-94365475 | MS.gene073021:intron | 70.0% | |
| GGTGGTCGTGGTCGGTCTGG+TGG | - | chr3.4:94365453-94365472 | MS.gene073021:intron | 70.0% | |
| GTCCTCGTGAGCGGTCCCCT+AGG | - | chr3.4:94365871-94365890 | MS.gene073021:intron | 70.0% | |
| ! | AGCTGCGCCGGCGAGGTGAA+GGG | + | chr3.4:94365926-94365945 | None:intergenic | 70.0% |
| ! | CTGCTATAGCTGCGCCGGCG+AGG | + | chr3.4:94365933-94365952 | None:intergenic | 70.0% |
| ! | GGGCTGCGTCGACGAGGAGA+AGG | + | chr3.4:94365906-94365925 | None:intergenic | 70.0% |
| ! | GGTGAAGGGCTGCGTCGACG+AGG | + | chr3.4:94365912-94365931 | None:intergenic | 70.0% |
| ! | TAGCTGCGCCGGCGAGGTGA+AGG | + | chr3.4:94365927-94365946 | None:intergenic | 70.0% |
| !! | GGAGGCAGAGGTGGTGGTGG+CGG | - | chr3.4:94365432-94365451 | MS.gene073021:intron | 70.0% |
| !! | GTGGTGGCGGTGGTCGTGGT+CGG | - | chr3.4:94365445-94365464 | MS.gene073021:intron | 70.0% |
| CGCCTAGGGGACCGCTCACG+AGG | + | chr3.4:94365876-94365895 | None:intergenic | 75.0% | |
| CGTGGTCGGTCTGGTGGGGG+TGG | - | chr3.4:94365459-94365478 | MS.gene073021:intron | 75.0% | |
| GGAGAAGGGCTGCGCCGCCT+AGG | + | chr3.4:94365891-94365910 | None:intergenic | 75.0% | |
| GGAGGGGGAGGCAGAGGTGG+TGG | - | chr3.4:94365426-94365445 | MS.gene073021:intron | 75.0% | |
| GGAGGTGGAGGGGGAGGCAG+AGG | - | chr3.4:94365420-94365439 | MS.gene073021:intron | 75.0% | |
| GGCGGTGGTCGTGGTCGGTC+TGG | - | chr3.4:94365450-94365469 | MS.gene073021:intron | 75.0% | |
| GGTGGAGGGGGAGGCAGAGG+TGG | - | chr3.4:94365423-94365442 | MS.gene073021:intron | 75.0% | |
| ! | GGGGGAGGCAGAGGTGGTGG+TGG | - | chr3.4:94365429-94365448 | MS.gene073021:intron | 75.0% |
| !! | GGCAGAGGTGGTGGTGGCGG+TGG | - | chr3.4:94365435-94365454 | MS.gene073021:intron | 75.0% |
| !! | GGTGGTGGTGGCGGTGGTCG+TGG | - | chr3.4:94365441-94365460 | MS.gene073021:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 94364112 | 94366672 | 94364112 | ID=MS.gene073021 |
| chr3.4 | mRNA | 94364112 | 94366672 | 94364112 | ID=MS.gene073021.t1;Parent=MS.gene073021 |
| chr3.4 | exon | 94366584 | 94366672 | 94366584 | ID=MS.gene073021.t1.exon1;Parent=MS.gene073021.t1 |
| chr3.4 | CDS | 94366584 | 94366672 | 94366584 | ID=cds.MS.gene073021.t1;Parent=MS.gene073021.t1 |
| chr3.4 | exon | 94366294 | 94366382 | 94366294 | ID=MS.gene073021.t1.exon2;Parent=MS.gene073021.t1 |
| chr3.4 | CDS | 94366294 | 94366382 | 94366294 | ID=cds.MS.gene073021.t1;Parent=MS.gene073021.t1 |
| chr3.4 | exon | 94365168 | 94365408 | 94365168 | ID=MS.gene073021.t1.exon3;Parent=MS.gene073021.t1 |
| chr3.4 | CDS | 94365168 | 94365408 | 94365168 | ID=cds.MS.gene073021.t1;Parent=MS.gene073021.t1 |
| chr3.4 | exon | 94364784 | 94364921 | 94364784 | ID=MS.gene073021.t1.exon4;Parent=MS.gene073021.t1 |
| chr3.4 | CDS | 94364784 | 94364921 | 94364784 | ID=cds.MS.gene073021.t1;Parent=MS.gene073021.t1 |
| chr3.4 | exon | 94364112 | 94364148 | 94364112 | ID=MS.gene073021.t1.exon5;Parent=MS.gene073021.t1 |
| chr3.4 | CDS | 94364112 | 94364148 | 94364112 | ID=cds.MS.gene073021.t1;Parent=MS.gene073021.t1 |
| Gene Sequence |
| Protein sequence |
