Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene073022.t1 | RHN70765.1 | 93.6 | 393 | 25 | 0 | 1 | 393 | 1 | 393 | 1.70E-217 | 765 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene073022.t1 | Q9SJA7 | 61.5 | 390 | 145 | 2 | 8 | 392 | 9 | 398 | 3.3e-145 | 516.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene073022.t1 | A0A396J2Y3 | 93.6 | 393 | 25 | 0 | 1 | 393 | 1 | 393 | 1.2e-217 | 765.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052302 | MS.gene073022 | 0.810005 | 1.43E-50 | -1.69E-46 |
| MS.gene056432 | MS.gene073022 | 0.813516 | 2.46E-51 | -1.69E-46 |
| MS.gene06001 | MS.gene073022 | 0.811081 | 8.37E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene073022.t1 | MTR_3g109010 | 94.330 | 388 | 22 | 0 | 1 | 388 | 1 | 388 | 0.0 | 766 |
| MS.gene073022.t1 | MTR_3g108990 | 75.515 | 388 | 94 | 1 | 6 | 393 | 4 | 390 | 0.0 | 629 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene073022.t1 | AT2G24580 | 61.538 | 390 | 145 | 2 | 8 | 392 | 9 | 398 | 0.0 | 513 |
Find 123 sgRNAs with CRISPR-Local
Find 156 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCATGAAATCCTACCAATTA+TGG | 0.163765 | 3.4:+94371565 | MS.gene073022:CDS |
| GATTGTTCTGGCGGCAGTTT+TGG | 0.168120 | 3.4:-94371683 | None:intergenic |
| GGATTCACATTCCAGATAAT+TGG | 0.173596 | 3.4:+94371757 | MS.gene073022:CDS |
| TTAACACAGCACCGTGATTA+TGG | 0.201891 | 3.4:-94371851 | None:intergenic |
| TTCAAGATGGCTCCTGTTAT+TGG | 0.214331 | 3.4:+94372425 | MS.gene073022:CDS |
| CTTGAGCTTCTTCCCATAAT+TGG | 0.224881 | 3.4:-94371578 | None:intergenic |
| CAAAGTGACTTCTAAGGTTT+AGG | 0.271926 | 3.4:+94372523 | MS.gene073022:CDS |
| GATAAGTGGGGTTGAAATTC+CGG | 0.295732 | 3.4:+94372007 | MS.gene073022:CDS |
| GATTTCTTGGGTGGTGAGTT+TGG | 0.296378 | 3.4:+94372362 | MS.gene073022:CDS |
| AAGATTCAAAGTGACTTCTA+AGG | 0.328744 | 3.4:+94372517 | MS.gene073022:CDS |
| AGGTTGATTTGAAACACTTT+AGG | 0.329368 | 3.4:+94372489 | MS.gene073022:CDS |
| GTTAAAATCTTCCCAATAAC+AGG | 0.330826 | 3.4:-94372437 | None:intergenic |
| TCAAGATGGCTCCTGTTATT+GGG | 0.345751 | 3.4:+94372426 | MS.gene073022:CDS |
| TGAGTTTCCGGGTTTGATTA+AGG | 0.346779 | 3.4:+94372160 | MS.gene073022:CDS |
| TGGAAACTCTGCTATGTTAC+TGG | 0.352482 | 3.4:+94372039 | MS.gene073022:CDS |
| TTGATTAAGGTGGCGGTTCA+CGG | 0.360760 | 3.4:+94372173 | MS.gene073022:CDS |
| GCCTCGTTTGGCGGCGTAGT+AGG | 0.367313 | 3.4:-94371430 | None:intergenic |
| ATTTCTTGGGTGGTGAGTTT+GGG | 0.369932 | 3.4:+94372363 | MS.gene073022:CDS |
| GAGAGACCAACCCAATTATC+TGG | 0.379000 | 3.4:-94371768 | None:intergenic |
| TGTTGTCGGCGCCGGCGTCA+TGG | 0.385217 | 3.4:+94371395 | MS.gene073022:CDS |
| AATCAAATTGTTCGAGAAGA+AGG | 0.386128 | 3.4:-94371461 | None:intergenic |
| TAACACAGCACCGTGATTAT+GGG | 0.386735 | 3.4:-94371850 | None:intergenic |
| CTTGACAGGGGAGATTGTTC+TGG | 0.394219 | 3.4:-94371695 | None:intergenic |
| TGGGCGACAGAGAGGATCAT+TGG | 0.402552 | 3.4:-94371663 | None:intergenic |
| GATTCACATTCCAGATAATT+GGG | 0.406800 | 3.4:+94371758 | MS.gene073022:CDS |
| CTCACGGCGGAGGACTTGAC+AGG | 0.408606 | 3.4:-94371709 | None:intergenic |
| CATGAAATCCTACCAATTAT+GGG | 0.408669 | 3.4:+94371566 | MS.gene073022:CDS |
| GATTATGATGTCATTGTTGT+CGG | 0.413369 | 3.4:+94371381 | MS.gene073022:CDS |
| GCTATGTTACTGGAGGATTA+AGG | 0.415435 | 3.4:+94372049 | MS.gene073022:CDS |
| GAGATGAAGGAGTGGGTTGA+AGG | 0.417841 | 3.4:+94372251 | MS.gene073022:CDS |
| GGTAGGATTTCATGACCATT+TGG | 0.418690 | 3.4:-94371557 | None:intergenic |
| TGAAATTCCGGTTCAACCAT+TGG | 0.427438 | 3.4:+94372019 | MS.gene073022:CDS |
| TTTCCAACGTTTGCTAGCTT+GGG | 0.428381 | 3.4:+94372107 | MS.gene073022:CDS |
| TCAACGATCATGGACTGTTC+AGG | 0.430100 | 3.4:+94371354 | None:intergenic |
| AGAGTTTCCAATGGTTGAAC+CGG | 0.447224 | 3.4:-94372026 | None:intergenic |
| GTTGTCGGCGCCGGCGTCAT+GGG | 0.448760 | 3.4:+94371396 | MS.gene073022:CDS |
| ATACAAGACTGTTTCACAAC+AGG | 0.472960 | 3.4:-94372305 | None:intergenic |
| AACGTTTGCTAGCTTGGGTA+GGG | 0.473620 | 3.4:+94372112 | MS.gene073022:CDS |
| GAGGATTAAGGAAGGTCACC+AGG | 0.474413 | 3.4:+94372061 | MS.gene073022:CDS |
| AGGATCATTGGATCGTTTGA+AGG | 0.481098 | 3.4:-94371651 | None:intergenic |
| CAGGGGAAGTTTACAATTGG+TGG | 0.482610 | 3.4:+94372080 | MS.gene073022:CDS |
| CAACGTTTGCTAGCTTGGGT+AGG | 0.482904 | 3.4:+94372111 | MS.gene073022:CDS |
| AACCGAGCTTGCAGTGGATG+GGG | 0.483462 | 3.4:+94372457 | MS.gene073022:CDS |
| TTTGGCAGTAATGTTGTTGA+GGG | 0.484250 | 3.4:-94371539 | None:intergenic |
| AGATGAAGGAGTGGGTTGAA+GGG | 0.484936 | 3.4:+94372252 | MS.gene073022:CDS |
| CACATTCCAGATAATTGGGT+TGG | 0.485990 | 3.4:+94371762 | MS.gene073022:CDS |
| CACCAGGGGAAGTTTACAAT+TGG | 0.486347 | 3.4:+94372077 | MS.gene073022:CDS |
| AAGCTAGTAAAGAAGATAAG+TGG | 0.486678 | 3.4:+94371993 | MS.gene073022:CDS |
| CGGCAACTTGCTCACGGCGG+AGG | 0.489123 | 3.4:-94371719 | None:intergenic |
| AATTATCTGGAATGTGAATC+CGG | 0.491329 | 3.4:-94371755 | None:intergenic |
| TAACCGAGCTTGCAGTGGAT+GGG | 0.492737 | 3.4:+94372456 | MS.gene073022:CDS |
| GATGTCATTGTTGTCGGCGC+CGG | 0.493784 | 3.4:+94371387 | MS.gene073022:CDS |
| CACCACCGTGGTTCCTCCCA+CGG | 0.495212 | 3.4:+94371489 | MS.gene073022:CDS |
| CACCAATTGTAAACTTCCCC+TGG | 0.502498 | 3.4:-94372079 | None:intergenic |
| TTCAGGTCATGGGTTCAAGA+TGG | 0.505834 | 3.4:+94372412 | MS.gene073022:CDS |
| TCAATGACAAAATCCTCATC+CGG | 0.508092 | 3.4:-94372341 | None:intergenic |
| TCCGGGTTTGATTAAGGTGG+CGG | 0.508515 | 3.4:+94372166 | MS.gene073022:CDS |
| TGTTGTTACAGTGGGAGCTT+GGG | 0.510640 | 3.4:+94371965 | MS.gene073022:CDS |
| TTAACCGAGCTTGCAGTGGA+TGG | 0.511740 | 3.4:+94372455 | MS.gene073022:CDS |
| AGCTAGTAAAGAAGATAAGT+GGG | 0.513331 | 3.4:+94371994 | MS.gene073022:CDS |
| CGGTGGCAACCCGTGTGACC+CGG | 0.513627 | 3.4:+94372193 | MS.gene073022:CDS |
| TGAAGGGAGATTCTGCGGGT+TGG | 0.515546 | 3.4:+94372268 | MS.gene073022:CDS |
| ATCAAATTGTTCGAGAAGAA+GGG | 0.518597 | 3.4:-94371460 | None:intergenic |
| GATTTGAAACACTTTAGGAT+TGG | 0.528059 | 3.4:+94372494 | MS.gene073022:CDS |
| GTGTTGTTACAGTGGGAGCT+TGG | 0.532196 | 3.4:+94371964 | MS.gene073022:CDS |
| TGGGTTGAAGGGAGATTCTG+CGG | 0.533320 | 3.4:+94372263 | MS.gene073022:CDS |
| TTTGTCATTGATTTCTTGGG+TGG | 0.534690 | 3.4:+94372353 | MS.gene073022:CDS |
| GGTCTCTTATCCGGGTCACA+CGG | 0.536854 | 3.4:-94372203 | None:intergenic |
| TCAACAACATTACTGCCAAA+TGG | 0.539320 | 3.4:+94371542 | MS.gene073022:CDS |
| GTATTCAATGACTCCGGATG+AGG | 0.542283 | 3.4:+94372328 | MS.gene073022:CDS |
| GTAAGCTGCGCGAATTGTGC+GGG | 0.543156 | 3.4:-94371517 | None:intergenic |
| TTTGGCGGCGTAGTAGGCGG+TGG | 0.546830 | 3.4:-94371424 | None:intergenic |
| CAAAGCTCATCACTTTGACA+TGG | 0.547108 | 3.4:+94371626 | MS.gene073022:CDS |
| ATTTGGCAGTAATGTTGTTG+AGG | 0.547801 | 3.4:-94371540 | None:intergenic |
| ATCTGGAATGTGAATCCGGC+CGG | 0.550849 | 3.4:-94371751 | None:intergenic |
| AGCTTCTTCCCATAATTGGT+AGG | 0.558510 | 3.4:-94371574 | None:intergenic |
| GAAGAAGCTCAAGCTCAAGC+AGG | 0.562723 | 3.4:+94371588 | MS.gene073022:CDS |
| AATCCGGCCGGAGAATTTGT+CGG | 0.568911 | 3.4:-94371739 | None:intergenic |
| GGTAAGCTGCGCGAATTGTG+CGG | 0.569669 | 3.4:-94371518 | None:intergenic |
| CAAGTTGCCGACAAATTCTC+CGG | 0.569878 | 3.4:+94371732 | MS.gene073022:CDS |
| GAACCCATGACCTGAAAACC+CGG | 0.571256 | 3.4:-94372405 | None:intergenic |
| TGTGATGATGGATGAGATGA+AGG | 0.572411 | 3.4:+94372238 | MS.gene073022:CDS |
| TTGCCGACAAATTCTCCGGC+CGG | 0.574294 | 3.4:+94371736 | MS.gene073022:CDS |
| GGATCATTGGATCGTTTGAA+GGG | 0.576890 | 3.4:-94371650 | None:intergenic |
| AAAGCTCATCACTTTGACAT+GGG | 0.578190 | 3.4:+94371627 | MS.gene073022:CDS |
| ATTTGTCGGCAACTTGCTCA+CGG | 0.585420 | 3.4:-94371725 | None:intergenic |
| GACAGGGGAGATTGTTCTGG+CGG | 0.593037 | 3.4:-94371692 | None:intergenic |
| GTCTCTTATCCGGGTCACAC+GGG | 0.598944 | 3.4:-94372202 | None:intergenic |
| GCCTACTACGCCGCCAAACG+AGG | 0.599772 | 3.4:+94371429 | MS.gene073022:CDS |
| ACCGAGCTTGCAGTGGATGG+GGG | 0.601393 | 3.4:+94372458 | MS.gene073022:CDS |
| TGTGCGGGATTCACCGTGGG+AGG | 0.601763 | 3.4:-94371502 | None:intergenic |
| TTGTATGTATTCAATGACTC+CGG | 0.607281 | 3.4:+94372322 | MS.gene073022:CDS |
| AATTGTGCGGGATTCACCGT+GGG | 0.611044 | 3.4:-94371505 | None:intergenic |
| GGGTTGAAGGGAGATTCTGC+GGG | 0.611176 | 3.4:+94372264 | MS.gene073022:CDS |
| TCGTTTGGCGGCGTAGTAGG+CGG | 0.613771 | 3.4:-94371427 | None:intergenic |
| CAGTCACTCGCCCATAATCA+CGG | 0.616130 | 3.4:+94371840 | MS.gene073022:CDS |
| TCACGGCGGAGGACTTGACA+GGG | 0.617693 | 3.4:-94371708 | None:intergenic |
| ACCGCCACCTTAATCAAACC+CGG | 0.624770 | 3.4:-94372167 | None:intergenic |
| GTTTCCGGGTTTGATTAAGG+TGG | 0.627790 | 3.4:+94372163 | MS.gene073022:CDS |
| AGGATTAAGGAAGGTCACCA+GGG | 0.630417 | 3.4:+94372062 | MS.gene073022:CDS |
| CCCGGATAAGAGACCGTGGG+GGG | 0.630913 | 3.4:+94372211 | MS.gene073022:CDS |
| ATTCACCGTGGGAGGAACCA+CGG | 0.631205 | 3.4:-94371494 | None:intergenic |
| AAACTCTGCTATGTTACTGG+AGG | 0.639972 | 3.4:+94372042 | MS.gene073022:CDS |
| TAACATAGCAGAGTTTCCAA+TGG | 0.642710 | 3.4:-94372035 | None:intergenic |
| TGACCCGGATAAGAGACCGT+GGG | 0.643272 | 3.4:+94372208 | MS.gene073022:CDS |
| AAACCCGGAAACTCAAAACT+CGG | 0.646393 | 3.4:-94372152 | None:intergenic |
| TGTTACTGGAGGATTAAGGA+AGG | 0.649177 | 3.4:+94372053 | MS.gene073022:CDS |
| CTACCCAAGCTAGCAAACGT+TGG | 0.649915 | 3.4:-94372110 | None:intergenic |
| TGATGGATGAGATGAAGGAG+TGG | 0.652204 | 3.4:+94372243 | MS.gene073022:CDS |
| GGTGGAGCTTCCCATGACGC+CGG | 0.655227 | 3.4:-94371406 | None:intergenic |
| GATGGATGAGATGAAGGAGT+GGG | 0.660248 | 3.4:+94372244 | MS.gene073022:CDS |
| GACCCGGATAAGAGACCGTG+GGG | 0.662266 | 3.4:+94372209 | MS.gene073022:CDS |
| GAATTGTGCGGGATTCACCG+TGG | 0.663241 | 3.4:-94371506 | None:intergenic |
| GTGACCCGGATAAGAGACCG+TGG | 0.667189 | 3.4:+94372207 | MS.gene073022:CDS |
| CACGGCGGAGGACTTGACAG+GGG | 0.693821 | 3.4:-94371707 | None:intergenic |
| GTTGGTCTCTCAACAGAACA+CGG | 0.695902 | 3.4:+94371780 | MS.gene073022:CDS |
| GGATTAAGGAAGGTCACCAG+GGG | 0.699475 | 3.4:+94372063 | MS.gene073022:CDS |
| GCTAGTAAAGAAGATAAGTG+GGG | 0.704260 | 3.4:+94371995 | MS.gene073022:CDS |
| ACCCGGATAAGAGACCGTGG+GGG | 0.723073 | 3.4:+94372210 | MS.gene073022:CDS |
| ATTAAGGTGGCGGTTCACGG+TGG | 0.723292 | 3.4:+94372176 | MS.gene073022:CDS |
| TGTCGGCAACTTGCTCACGG+CGG | 0.753211 | 3.4:-94371722 | None:intergenic |
| CACCGTGGGAGGAACCACGG+TGG | 0.786190 | 3.4:-94371491 | None:intergenic |
| GGTCTCTCAACAGAACACGG+TGG | 0.834718 | 3.4:+94371783 | MS.gene073022:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAATGTGTTGTTACAGT+GGG | + | chr3.4:94371957-94371976 | MS.gene073022:CDS | 25.0% |
| !!! | GATTTTGTCATTGATTTCTT+GGG | + | chr3.4:94372350-94372369 | MS.gene073022:CDS | 25.0% |
| AAGATTCAAAGTGACTTCTA+AGG | + | chr3.4:94372517-94372536 | MS.gene073022:CDS | 30.0% | |
| AAGCTAGTAAAGAAGATAAG+TGG | + | chr3.4:94371993-94372012 | MS.gene073022:CDS | 30.0% | |
| AATCAAATTGTTCGAGAAGA+AGG | - | chr3.4:94371464-94371483 | None:intergenic | 30.0% | |
| AGCTAGTAAAGAAGATAAGT+GGG | + | chr3.4:94371994-94372013 | MS.gene073022:CDS | 30.0% | |
| ATCAAATTGTTCGAGAAGAA+GGG | - | chr3.4:94371463-94371482 | None:intergenic | 30.0% | |
| CATGAAATCCTACCAATTAT+GGG | + | chr3.4:94371566-94371585 | MS.gene073022:CDS | 30.0% | |
| GATTATGATGTCATTGTTGT+CGG | + | chr3.4:94371381-94371400 | MS.gene073022:CDS | 30.0% | |
| GATTCACATTCCAGATAATT+GGG | + | chr3.4:94371758-94371777 | MS.gene073022:CDS | 30.0% | |
| GTTAAAATCTTCCCAATAAC+AGG | - | chr3.4:94372440-94372459 | None:intergenic | 30.0% | |
| TCATGAAATCCTACCAATTA+TGG | + | chr3.4:94371565-94371584 | MS.gene073022:CDS | 30.0% | |
| TTGTATGTATTCAATGACTC+CGG | + | chr3.4:94372322-94372341 | MS.gene073022:CDS | 30.0% | |
| ! | AATTATCTGGAATGTGAATC+CGG | - | chr3.4:94371758-94371777 | None:intergenic | 30.0% |
| ! | CAAAAAATGTGTTGTTACAG+TGG | + | chr3.4:94371956-94371975 | MS.gene073022:CDS | 30.0% |
| ! | TTTGGGAAAAATGTGGTTTT+AGG | + | chr3.4:94372380-94372399 | MS.gene073022:CDS | 30.0% |
| !! | AGGTTGATTTGAAACACTTT+AGG | + | chr3.4:94372489-94372508 | MS.gene073022:CDS | 30.0% |
| !! | GATTTGAAACACTTTAGGAT+TGG | + | chr3.4:94372494-94372513 | MS.gene073022:CDS | 30.0% |
| !!! | GGATTTTGTCATTGATTTCT+TGG | + | chr3.4:94372349-94372368 | MS.gene073022:CDS | 30.0% |
| !!! | GTTGTTATTTTAACAGCCAA+AGG | + | chr3.4:94371918-94371937 | MS.gene073022:CDS | 30.0% |
| !!! | TAACAACACATTTTTTGCCA+CGG | - | chr3.4:94371953-94371972 | None:intergenic | 30.0% |
| AAAGCTCATCACTTTGACAT+GGG | + | chr3.4:94371627-94371646 | MS.gene073022:CDS | 35.0% | |
| ATACAAGACTGTTTCACAAC+AGG | - | chr3.4:94372308-94372327 | None:intergenic | 35.0% | |
| ATTTGGCAGTAATGTTGTTG+AGG | - | chr3.4:94371543-94371562 | None:intergenic | 35.0% | |
| GCTAGTAAAGAAGATAAGTG+GGG | + | chr3.4:94371995-94372014 | MS.gene073022:CDS | 35.0% | |
| GGATTCACATTCCAGATAAT+TGG | + | chr3.4:94371757-94371776 | MS.gene073022:CDS | 35.0% | |
| GTAGACATAAAAAACGACAG+CGG | + | chr3.4:94371891-94371910 | MS.gene073022:CDS | 35.0% | |
| TAACATAGCAGAGTTTCCAA+TGG | - | chr3.4:94372038-94372057 | None:intergenic | 35.0% | |
| TCAACAACATTACTGCCAAA+TGG | + | chr3.4:94371542-94371561 | MS.gene073022:CDS | 35.0% | |
| TCAATGACAAAATCCTCATC+CGG | - | chr3.4:94372344-94372363 | None:intergenic | 35.0% | |
| TTTGGCAGTAATGTTGTTGA+GGG | - | chr3.4:94371542-94371561 | None:intergenic | 35.0% | |
| ! | AAACATCGTTACAGCTTTTG+TGG | - | chr3.4:94371820-94371839 | None:intergenic | 35.0% |
| !! | TTTGTCATTGATTTCTTGGG+TGG | + | chr3.4:94372353-94372372 | MS.gene073022:CDS | 35.0% |
| !!! | AAAAATGTGGTTTTAGGTGC+CGG | + | chr3.4:94372386-94372405 | MS.gene073022:CDS | 35.0% |
| !!! | TTGGGTAGGGTTTTATTGTA+TGG | + | chr3.4:94372125-94372144 | MS.gene073022:CDS | 35.0% |
| AAACCCGGAAACTCAAAACT+CGG | - | chr3.4:94372155-94372174 | None:intergenic | 40.0% | |
| AAACTCTGCTATGTTACTGG+AGG | + | chr3.4:94372042-94372061 | MS.gene073022:CDS | 40.0% | |
| AGAGTTTCCAATGGTTGAAC+CGG | - | chr3.4:94372029-94372048 | None:intergenic | 40.0% | |
| AGCTTCTTCCCATAATTGGT+AGG | - | chr3.4:94371577-94371596 | None:intergenic | 40.0% | |
| AGGATCATTGGATCGTTTGA+AGG | - | chr3.4:94371654-94371673 | None:intergenic | 40.0% | |
| ATTTCTTGGGTGGTGAGTTT+GGG | + | chr3.4:94372363-94372382 | MS.gene073022:CDS | 40.0% | |
| CAAAGCTCATCACTTTGACA+TGG | + | chr3.4:94371626-94371645 | MS.gene073022:CDS | 40.0% | |
| CACATTCCAGATAATTGGGT+TGG | + | chr3.4:94371762-94371781 | MS.gene073022:CDS | 40.0% | |
| CTTGAGCTTCTTCCCATAAT+TGG | - | chr3.4:94371581-94371600 | None:intergenic | 40.0% | |
| GATAAGTGGGGTTGAAATTC+CGG | + | chr3.4:94372007-94372026 | MS.gene073022:CDS | 40.0% | |
| GCTATGTTACTGGAGGATTA+AGG | + | chr3.4:94372049-94372068 | MS.gene073022:CDS | 40.0% | |
| GGATCATTGGATCGTTTGAA+GGG | - | chr3.4:94371653-94371672 | None:intergenic | 40.0% | |
| GGTAGGATTTCATGACCATT+TGG | - | chr3.4:94371560-94371579 | None:intergenic | 40.0% | |
| TAACACAGCACCGTGATTAT+GGG | - | chr3.4:94371853-94371872 | None:intergenic | 40.0% | |
| TCAAGATGGCTCCTGTTATT+GGG | + | chr3.4:94372426-94372445 | MS.gene073022:CDS | 40.0% | |
| TGAAATTCCGGTTCAACCAT+TGG | + | chr3.4:94372019-94372038 | MS.gene073022:CDS | 40.0% | |
| TGAGTTTCCGGGTTTGATTA+AGG | + | chr3.4:94372160-94372179 | MS.gene073022:CDS | 40.0% | |
| TGGAAACTCTGCTATGTTAC+TGG | + | chr3.4:94372039-94372058 | MS.gene073022:CDS | 40.0% | |
| TGGTGAGTTTGGGAAAAATG+TGG | + | chr3.4:94372373-94372392 | MS.gene073022:CDS | 40.0% | |
| TGTTACTGGAGGATTAAGGA+AGG | + | chr3.4:94372053-94372072 | MS.gene073022:CDS | 40.0% | |
| TTAACACAGCACCGTGATTA+TGG | - | chr3.4:94371854-94371873 | None:intergenic | 40.0% | |
| TTCAAGATGGCTCCTGTTAT+TGG | + | chr3.4:94372425-94372444 | MS.gene073022:CDS | 40.0% | |
| ! | TTTCCAACGTTTGCTAGCTT+GGG | + | chr3.4:94372107-94372126 | MS.gene073022:CDS | 40.0% |
| !! | TGTGATGATGGATGAGATGA+AGG | + | chr3.4:94372238-94372257 | MS.gene073022:CDS | 40.0% |
| !! | TTTGATTTTCTTCACCACCG+TGG | + | chr3.4:94371477-94371496 | MS.gene073022:CDS | 40.0% |
| !! | TTTTCCAACGTTTGCTAGCT+TGG | + | chr3.4:94372106-94372125 | MS.gene073022:CDS | 40.0% |
| !!! | AAAATGTGGTTTTAGGTGCC+GGG | + | chr3.4:94372387-94372406 | MS.gene073022:CDS | 40.0% |
| AGGATTAAGGAAGGTCACCA+GGG | + | chr3.4:94372062-94372081 | MS.gene073022:CDS | 45.0% | |
| CAAGTTGCCGACAAATTCTC+CGG | + | chr3.4:94371732-94371751 | MS.gene073022:CDS | 45.0% | |
| CACCAATTGTAAACTTCCCC+TGG | - | chr3.4:94372082-94372101 | None:intergenic | 45.0% | |
| CACCAGGGGAAGTTTACAAT+TGG | + | chr3.4:94372077-94372096 | MS.gene073022:CDS | 45.0% | |
| CAGGGGAAGTTTACAATTGG+TGG | + | chr3.4:94372080-94372099 | MS.gene073022:CDS | 45.0% | |
| GAGAGACCAACCCAATTATC+TGG | - | chr3.4:94371771-94371790 | None:intergenic | 45.0% | |
| GATGGATGAGATGAAGGAGT+GGG | + | chr3.4:94372244-94372263 | MS.gene073022:CDS | 45.0% | |
| GATTTCTTGGGTGGTGAGTT+TGG | + | chr3.4:94372362-94372381 | MS.gene073022:CDS | 45.0% | |
| GCCAAAGGTGAAAAATTCCG+TGG | + | chr3.4:94371933-94371952 | MS.gene073022:CDS | 45.0% | |
| GTATTCAATGACTCCGGATG+AGG | + | chr3.4:94372328-94372347 | MS.gene073022:CDS | 45.0% | |
| GTTTCCGGGTTTGATTAAGG+TGG | + | chr3.4:94372163-94372182 | MS.gene073022:CDS | 45.0% | |
| TGTTGTTACAGTGGGAGCTT+GGG | + | chr3.4:94371965-94371984 | MS.gene073022:CDS | 45.0% | |
| TTCAGGTCATGGGTTCAAGA+TGG | + | chr3.4:94372412-94372431 | MS.gene073022:CDS | 45.0% | |
| ! | AACGTTTGCTAGCTTGGGTA+GGG | + | chr3.4:94372112-94372131 | MS.gene073022:CDS | 45.0% |
| ! | ATTGTTCTGGCGGCAGTTTT+GGG | - | chr3.4:94371685-94371704 | None:intergenic | 45.0% |
| ! | ATTTGTCGGCAACTTGCTCA+CGG | - | chr3.4:94371728-94371747 | None:intergenic | 45.0% |
| ! | GCCACGGAATTTTTCACCTT+TGG | - | chr3.4:94371937-94371956 | None:intergenic | 45.0% |
| ! | GTTCGAGAAGAAGGGTTTTG+AGG | - | chr3.4:94371455-94371474 | None:intergenic | 45.0% |
| ! | GTTGGTCTCTCAACAGAACA+CGG | + | chr3.4:94371780-94371799 | MS.gene073022:CDS | 45.0% |
| ! | TGATGGATGAGATGAAGGAG+TGG | + | chr3.4:94372243-94372262 | MS.gene073022:CDS | 45.0% |
| ! | TTGATTAAGGTGGCGGTTCA+CGG | + | chr3.4:94372173-94372192 | MS.gene073022:CDS | 45.0% |
| !! | AGATGAAGGAGTGGGTTGAA+GGG | + | chr3.4:94372252-94372271 | MS.gene073022:CDS | 45.0% |
| !! | GATTTTAACCGAGCTTGCAG+TGG | + | chr3.4:94372451-94372470 | MS.gene073022:CDS | 45.0% |
| !!! | ATCGCCGAGTTTTGAGTTTC+CGG | + | chr3.4:94372148-94372167 | MS.gene073022:CDS | 45.0% |
| AATCCGGCCGGAGAATTTGT+CGG | - | chr3.4:94371742-94371761 | None:intergenic | 50.0% | |
| AATTGTGCGGGATTCACCGT+GGG | - | chr3.4:94371508-94371527 | None:intergenic | 50.0% | |
| ACCGCCACCTTAATCAAACC+CGG | - | chr3.4:94372170-94372189 | None:intergenic | 50.0% | |
| AGTGGATGGGGGAACTAATG+AGG | + | chr3.4:94372469-94372488 | MS.gene073022:CDS | 50.0% | |
| CAGTCACTCGCCCATAATCA+CGG | + | chr3.4:94371840-94371859 | MS.gene073022:CDS | 50.0% | |
| CTACCCAAGCTAGCAAACGT+TGG | - | chr3.4:94372113-94372132 | None:intergenic | 50.0% | |
| CTTGACAGGGGAGATTGTTC+TGG | - | chr3.4:94371698-94371717 | None:intergenic | 50.0% | |
| GAACCCATGACCTGAAAACC+CGG | - | chr3.4:94372408-94372427 | None:intergenic | 50.0% | |
| GAAGAAGCTCAAGCTCAAGC+AGG | + | chr3.4:94371588-94371607 | MS.gene073022:CDS | 50.0% | |
| GAGGATTAAGGAAGGTCACC+AGG | + | chr3.4:94372061-94372080 | MS.gene073022:CDS | 50.0% | |
| GGATTAAGGAAGGTCACCAG+GGG | + | chr3.4:94372063-94372082 | MS.gene073022:CDS | 50.0% | |
| TAACCGAGCTTGCAGTGGAT+GGG | + | chr3.4:94372456-94372475 | MS.gene073022:CDS | 50.0% | |
| TCCGGGTTTGATTAAGGTGG+CGG | + | chr3.4:94372166-94372185 | MS.gene073022:CDS | 50.0% | |
| TTAACCGAGCTTGCAGTGGA+TGG | + | chr3.4:94372455-94372474 | MS.gene073022:CDS | 50.0% | |
| ! | ATCTGGAATGTGAATCCGGC+CGG | - | chr3.4:94371754-94371773 | None:intergenic | 50.0% |
| ! | CAACGTTTGCTAGCTTGGGT+AGG | + | chr3.4:94372111-94372130 | MS.gene073022:CDS | 50.0% |
| ! | GATTGTTCTGGCGGCAGTTT+TGG | - | chr3.4:94371686-94371705 | None:intergenic | 50.0% |
| ! | GTGTTGTTACAGTGGGAGCT+TGG | + | chr3.4:94371964-94371983 | MS.gene073022:CDS | 50.0% |
| ! | TGGGTTGAAGGGAGATTCTG+CGG | + | chr3.4:94372263-94372282 | MS.gene073022:CDS | 50.0% |
| !! | GAGATGAAGGAGTGGGTTGA+AGG | + | chr3.4:94372251-94372270 | MS.gene073022:CDS | 50.0% |
| !!! | AAGGGTTTTGAGGCCTCGTT+TGG | - | chr3.4:94371445-94371464 | None:intergenic | 50.0% |
| !!! | GTTTTAGGTGCCGGGTTTTC+AGG | + | chr3.4:94372395-94372414 | MS.gene073022:CDS | 50.0% |
| !!! | TCGCCGAGTTTTGAGTTTCC+GGG | + | chr3.4:94372149-94372168 | MS.gene073022:CDS | 50.0% |
| AACCGAGCTTGCAGTGGATG+GGG | + | chr3.4:94372457-94372476 | MS.gene073022:CDS | 55.0% | |
| ATTCACCGTGGGAGGAACCA+CGG | - | chr3.4:94371497-94371516 | None:intergenic | 55.0% | |
| GAATTGTGCGGGATTCACCG+TGG | - | chr3.4:94371509-94371528 | None:intergenic | 55.0% | |
| GACAGGGGAGATTGTTCTGG+CGG | - | chr3.4:94371695-94371714 | None:intergenic | 55.0% | |
| GATGTCATTGTTGTCGGCGC+CGG | + | chr3.4:94371387-94371406 | MS.gene073022:CDS | 55.0% | |
| GGGTTGAAGGGAGATTCTGC+GGG | + | chr3.4:94372264-94372283 | MS.gene073022:CDS | 55.0% | |
| GGTAAGCTGCGCGAATTGTG+CGG | - | chr3.4:94371521-94371540 | None:intergenic | 55.0% | |
| GGTCTCTCAACAGAACACGG+TGG | + | chr3.4:94371783-94371802 | MS.gene073022:CDS | 55.0% | |
| GGTCTCTTATCCGGGTCACA+CGG | - | chr3.4:94372206-94372225 | None:intergenic | 55.0% | |
| GTAAGCTGCGCGAATTGTGC+GGG | - | chr3.4:94371520-94371539 | None:intergenic | 55.0% | |
| GTCTCTTATCCGGGTCACAC+GGG | - | chr3.4:94372205-94372224 | None:intergenic | 55.0% | |
| TGAAGGGAGATTCTGCGGGT+TGG | + | chr3.4:94372268-94372287 | MS.gene073022:CDS | 55.0% | |
| TGACCCGGATAAGAGACCGT+GGG | + | chr3.4:94372208-94372227 | MS.gene073022:CDS | 55.0% | |
| TGGGCGACAGAGAGGATCAT+TGG | - | chr3.4:94371666-94371685 | None:intergenic | 55.0% | |
| TTGCCGACAAATTCTCCGGC+CGG | + | chr3.4:94371736-94371755 | MS.gene073022:CDS | 55.0% | |
| ! | ATTAAGGTGGCGGTTCACGG+TGG | + | chr3.4:94372176-94372195 | MS.gene073022:CDS | 55.0% |
| !!! | GGTTTTGAGGCCTCGTTTGG+CGG | - | chr3.4:94371442-94371461 | None:intergenic | 55.0% |
| !!! | GTGCCGGGTTTTCAGGTCAT+GGG | + | chr3.4:94372402-94372421 | MS.gene073022:CDS | 55.0% |
| ACCCGGATAAGAGACCGTGG+GGG | + | chr3.4:94372210-94372229 | MS.gene073022:CDS | 60.0% | |
| ACCGAGCTTGCAGTGGATGG+GGG | + | chr3.4:94372458-94372477 | MS.gene073022:CDS | 60.0% | |
| ATCATCACACCTGCCCCCCA+CGG | - | chr3.4:94372227-94372246 | None:intergenic | 60.0% | |
| GACCCGGATAAGAGACCGTG+GGG | + | chr3.4:94372209-94372228 | MS.gene073022:CDS | 60.0% | |
| GTGACCCGGATAAGAGACCG+TGG | + | chr3.4:94372207-94372226 | MS.gene073022:CDS | 60.0% | |
| TCACGGCGGAGGACTTGACA+GGG | - | chr3.4:94371711-94371730 | None:intergenic | 60.0% | |
| TCCCCCATCCACTGCAAGCT+CGG | - | chr3.4:94372462-94372481 | None:intergenic | 60.0% | |
| TCGTTTGGCGGCGTAGTAGG+CGG | - | chr3.4:94371430-94371449 | None:intergenic | 60.0% | |
| ! | TGTCGGCAACTTGCTCACGG+CGG | - | chr3.4:94371725-94371744 | None:intergenic | 60.0% |
| !!! | GGCAGTTTTGGGCGACAGAG+AGG | - | chr3.4:94371674-94371693 | None:intergenic | 60.0% |
| !!! | GGTGCCGGGTTTTCAGGTCA+TGG | + | chr3.4:94372401-94372420 | MS.gene073022:CDS | 60.0% |
| CACCACCGTGGTTCCTCCCA+CGG | + | chr3.4:94371489-94371508 | MS.gene073022:CDS | 65.0% | |
| CACGGCGGAGGACTTGACAG+GGG | - | chr3.4:94371710-94371729 | None:intergenic | 65.0% | |
| CCCCCCACGGTCTCTTATCC+GGG | - | chr3.4:94372214-94372233 | None:intergenic | 65.0% | |
| CCCGGATAAGAGACCGTGGG+GGG | + | chr3.4:94372211-94372230 | MS.gene073022:CDS | 65.0% | |
| CTCACGGCGGAGGACTTGAC+AGG | - | chr3.4:94371712-94371731 | None:intergenic | 65.0% | |
| GATAAGAGACCGTGGGGGGC+AGG | + | chr3.4:94372215-94372234 | MS.gene073022:CDS | 65.0% | |
| GCCCCCCACGGTCTCTTATC+CGG | - | chr3.4:94372215-94372234 | None:intergenic | 65.0% | |
| GCCTACTACGCCGCCAAACG+AGG | + | chr3.4:94371429-94371448 | MS.gene073022:CDS | 65.0% | |
| GCCTCGTTTGGCGGCGTAGT+AGG | - | chr3.4:94371433-94371452 | None:intergenic | 65.0% | |
| GGTGGAGCTTCCCATGACGC+CGG | - | chr3.4:94371409-94371428 | None:intergenic | 65.0% | |
| GTGGGGGGCAGGTGTGATGA+TGG | + | chr3.4:94372226-94372245 | MS.gene073022:CDS | 65.0% | |
| TGTGCGGGATTCACCGTGGG+AGG | - | chr3.4:94371505-94371524 | None:intergenic | 65.0% | |
| TTTGGCGGCGTAGTAGGCGG+TGG | - | chr3.4:94371427-94371446 | None:intergenic | 65.0% | |
| CACCGTGGGAGGAACCACGG+TGG | - | chr3.4:94371494-94371513 | None:intergenic | 70.0% | |
| CGGTGGCAACCCGTGTGACC+CGG | + | chr3.4:94372193-94372212 | MS.gene073022:CDS | 70.0% | |
| ! | CGGCAACTTGCTCACGGCGG+AGG | - | chr3.4:94371722-94371741 | None:intergenic | 70.0% |
| !! | GTTGTCGGCGCCGGCGTCAT+GGG | + | chr3.4:94371396-94371415 | MS.gene073022:CDS | 70.0% |
| !! | TGTTGTCGGCGCCGGCGTCA+TGG | + | chr3.4:94371395-94371414 | MS.gene073022:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 94371363 | 94372544 | 94371363 | ID=MS.gene073022 |
| chr3.4 | mRNA | 94371363 | 94372544 | 94371363 | ID=MS.gene073022.t1;Parent=MS.gene073022 |
| chr3.4 | exon | 94371363 | 94372544 | 94371363 | ID=MS.gene073022.t1.exon1;Parent=MS.gene073022.t1 |
| chr3.4 | CDS | 94371363 | 94372544 | 94371363 | ID=cds.MS.gene073022.t1;Parent=MS.gene073022.t1 |
| Gene Sequence |
| Protein sequence |
