AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene073143

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene073143.t1 MTR_2g084360 90.355 197 18 1 19 215 1 196 2.01e-119 345
MS.gene073143.t1 MTR_2g093960 36.129 155 86 3 224 378 41 182 4.23e-26 108
MS.gene073143.t1 MTR_4g059870 34.839 155 88 3 224 378 47 188 4.42e-25 107
MS.gene073143.t1 MTR_8g017210 35.484 155 86 3 224 378 71 211 5.12e-25 107
MS.gene073143.t1 MTR_1g093095 38.922 167 93 8 235 397 105 266 2.13e-24 102
MS.gene073143.t1 MTR_1g112270 36.129 155 85 4 224 378 53 193 1.60e-23 102
MS.gene073143.t1 MTR_2g099990 34.177 158 90 3 224 381 55 198 2.98e-23 101
MS.gene073143.t1 MTR_1g112270 36.184 152 83 4 227 378 67 204 8.57e-23 100
MS.gene073143.t1 MTR_1g016010 33.548 155 90 3 224 378 50 191 1.42e-22 99.4
MS.gene073143.t1 MTR_1g094115 34.194 155 88 4 224 378 56 196 5.03e-22 98.2
MS.gene073143.t1 MTR_2g090745 33.333 159 90 4 220 378 14 156 1.35e-20 93.6
MS.gene073143.t1 MTR_2g099990 34.965 143 79 3 239 381 1 129 1.62e-20 92.8
MS.gene073143.t1 MTR_1g094115 35.338 133 72 4 246 378 61 179 2.10e-18 87.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene073143.t1 AT5G22890 47.753 356 124 7 46 388 55 361 4.46e-110 328
MS.gene073143.t1 AT1G34370 59.639 166 67 0 224 389 14 179 2.51e-73 231
MS.gene073143.t1 AT1G34370 34.406 404 182 9 8 389 47 389 5.27e-73 236
MS.gene073143.t1 AT1G34370 34.406 404 182 9 8 389 47 389 5.27e-73 236
MS.gene073143.t1 AT3G45260 36.129 155 86 3 224 378 48 189 5.92e-25 106
MS.gene073143.t1 AT3G45260 36.129 155 86 3 224 378 48 189 5.92e-25 106
MS.gene073143.t1 AT5G60470 34.839 155 88 4 224 378 53 194 6.17e-25 106
MS.gene073143.t1 AT5G60470 34.839 155 88 4 224 378 49 190 6.84e-25 106
MS.gene073143.t1 AT5G03150 35.484 155 87 3 224 378 62 203 2.17e-24 105
MS.gene073143.t1 AT5G60470 35.333 150 84 4 229 378 49 185 3.01e-24 104
MS.gene073143.t1 AT5G44160 34.194 155 88 3 224 378 46 186 3.12e-24 104
MS.gene073143.t1 AT1G03840 33.548 155 89 3 224 378 50 190 4.53e-24 104
MS.gene073143.t1 AT5G66730 35.484 155 86 4 224 378 41 181 1.05e-23 103
MS.gene073143.t1 AT1G55110 34.839 155 88 3 224 378 72 213 1.24e-23 102
MS.gene073143.t1 AT1G55110 34.839 155 88 3 224 378 72 213 1.24e-23 102
MS.gene073143.t1 AT1G55110 34.839 155 88 3 224 378 72 213 1.24e-23 102
MS.gene073143.t1 AT1G34790 39.490 157 86 5 238 392 138 287 1.36e-23 100
MS.gene073143.t1 AT2G02080 36.774 155 84 4 224 378 63 203 1.39e-23 102
MS.gene073143.t1 AT2G02080 36.774 155 84 4 224 378 63 203 1.39e-23 102
MS.gene073143.t1 AT2G02080 36.774 155 84 4 224 378 63 203 1.39e-23 102
MS.gene073143.t1 AT2G02080 36.774 155 84 4 224 378 63 203 1.39e-23 102
MS.gene073143.t1 AT5G44160 34.211 152 86 3 227 378 10 147 2.47e-23 101
MS.gene073143.t1 AT2G02070 36.129 155 85 4 224 378 61 201 2.82e-23 102
MS.gene073143.t1 AT2G02070 36.129 155 85 4 224 378 61 201 2.82e-23 102
MS.gene073143.t1 AT1G03840 34.194 155 86 4 224 378 50 188 2.89e-23 102
MS.gene073143.t1 AT4G02670 35.484 155 87 3 224 378 62 203 3.58e-23 100
MS.gene073143.t1 AT4G02670 35.484 155 87 3 224 378 64 205 3.87e-23 100
MS.gene073143.t1 AT3G13810 33.548 155 90 3 224 378 60 201 9.94e-23 100
MS.gene073143.t1 AT3G13810 33.548 155 90 3 224 378 79 220 1.01e-22 100
MS.gene073143.t1 AT3G13810 33.548 155 90 3 224 378 79 220 1.01e-22 100
MS.gene073143.t1 AT3G13810 33.548 155 90 3 224 378 74 215 1.09e-22 100
MS.gene073143.t1 AT3G50700 34.839 155 87 4 224 378 43 183 1.78e-22 99.4
MS.gene073143.t1 AT3G13810 33.553 152 88 3 227 378 83 221 6.67e-22 97.8
MS.gene073143.t1 AT3G13810 33.553 152 88 3 227 378 69 207 7.03e-22 97.8
MS.gene073143.t1 AT1G14580 33.548 155 89 4 224 378 62 202 7.59e-22 97.4
MS.gene073143.t1 AT1G14580 33.548 155 89 4 224 378 62 202 7.59e-22 97.4
MS.gene073143.t1 AT1G14580 34.194 155 88 4 224 378 76 216 9.69e-22 97.4
MS.gene073143.t1 AT1G51220 39.161 143 79 4 246 387 180 315 1.14e-21 95.5
MS.gene073143.t1 AT3G20880 39.161 143 79 4 246 387 258 393 1.17e-21 96.3
MS.gene073143.t1 AT1G08290 38.889 144 79 6 246 387 182 318 1.57e-21 95.1
MS.gene073143.t1 AT3G57670 36.913 149 87 3 238 386 211 352 1.77e-21 95.5
MS.gene073143.t1 AT1G13290 39.007 141 81 3 246 386 103 238 2.88e-21 93.6
MS.gene073143.t1 AT2G01940 35.669 157 85 5 224 378 53 195 8.16e-21 94.4
MS.gene073143.t1 AT2G02080 37.594 133 69 4 246 378 8 126 9.57e-20 90.9
MS.gene073143.t1 AT2G02080 37.594 133 69 4 246 378 8 126 9.57e-20 90.9
MS.gene073143.t1 AT1G25250 33.333 156 91 4 224 378 42 185 2.38e-19 89.4
MS.gene073143.t1 AT1G68130 32.692 156 91 4 224 378 50 192 1.23e-18 87.4
MS.gene073143.t1 AT1G25250 33.333 153 89 4 227 378 22 162 1.35e-18 87.0
MS.gene073143.t1 AT2G01940 35.862 145 77 5 224 366 53 183 4.80e-18 85.9

Find 90 sgRNAs with CRISPR-Local

Find 95 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTCTTGCATACATACATTT+TGG 0.081024 2.2:+13356467 None:intergenic
GACGATACATGCTTAAAATT+TGG 0.102733 2.2:-13356831 MS.gene073143:CDS
TCTAATATTCAATCAAATTT+TGG 0.121082 2.2:-13357071 MS.gene073143:CDS
AATTTGGGTCATCTTATAAT+TGG 0.155349 2.2:-13356815 MS.gene073143:CDS
TAATCTCTATTCTTAGTAAT+TGG 0.163762 2.2:+13356621 None:intergenic
AGACCCTCTTATACTATTAT+TGG 0.167733 2.2:+13356890 None:intergenic
GAAATTCCTTCCATGGAATT+TGG 0.168179 2.2:+13357365 None:intergenic
ACTATCTCATTGTCACATTC+TGG 0.228785 2.2:+13356786 None:intergenic
ACACCTCTAGGGTTTGAAAT+TGG 0.245720 2.2:-13357440 MS.gene073143:CDS
TTGATGAGTCTTGTTGATTT+GGG 0.247300 2.2:+13357246 None:intergenic
TTCTAGGAAAGATAAGCTTA+TGG 0.293207 2.2:-13356349 MS.gene073143:CDS
GTTGATGAGTCTTGTTGATT+TGG 0.304970 2.2:+13357245 None:intergenic
TTTCTGTTCTTTCTGATTTG+AGG 0.317726 2.2:-13356428 MS.gene073143:CDS
ACGATACATGCTTAAAATTT+GGG 0.323396 2.2:-13356830 MS.gene073143:CDS
ATAATAGTAACATTAATTAT+AGG 0.329713 2.2:-13356962 MS.gene073143:CDS
TCTAGGAAAGATAAGCTTAT+GGG 0.346344 2.2:-13356348 MS.gene073143:CDS
AGAGATTGAAGAGGAGGGAA+TGG 0.372257 2.2:+13357324 None:intergenic
TATGATAAACCATTGATAAC+CGG 0.377799 2.2:+13356297 None:intergenic
ATTTGGGTCATCTTATAATT+GGG 0.382161 2.2:-13356814 MS.gene073143:CDS
GAAACCAATAATAGTATAAG+AGG 0.388033 2.2:-13356894 MS.gene073143:CDS
GTCCTCAAGAAGGGTGTAGA+TGG 0.403741 2.2:-13356566 MS.gene073143:CDS
AGAAACATTGTGGTGATCTT+AGG 0.406285 2.2:-13356398 MS.gene073143:CDS
AATCAAGTGCAAACTCTTGT+TGG 0.406380 2.2:-13357281 MS.gene073143:CDS
AAGCTTATCTTTCCTAGAAA+AGG 0.414705 2.2:+13356353 None:intergenic
ACACATTATTGTCAAGTTTG+TGG 0.417742 2.2:-13356729 MS.gene073143:CDS
TGACAATGAGATAGTTGAAT+TGG 0.426435 2.2:-13356778 MS.gene073143:CDS
GGACATGTTGGTTTGTTTGT+GGG 0.428197 2.2:-13356327 MS.gene073143:CDS
TGCTTTGACCTCTAAGATCA+AGG 0.432251 2.2:+13357033 None:intergenic
GGGACATGTTGGTTTGTTTG+TGG 0.441560 2.2:-13356328 MS.gene073143:CDS
GAGATTGAAGAGGAGGGAAT+GGG 0.442453 2.2:+13357325 None:intergenic
TACAATGATTTCTTGTATTG+TGG 0.444279 2.2:+13357196 None:intergenic
CTATCTCATTGTCACATTCT+GGG 0.458096 2.2:+13356787 None:intergenic
ATTGAAGAGGAGGGAATGGG+AGG 0.458645 2.2:+13357328 None:intergenic
TAATAATGAGTCGGAACCAT+TGG 0.460337 2.2:-13357003 MS.gene073143:CDS
TATTGTCAAGTTTGTGGCAA+AGG 0.467134 2.2:-13356723 MS.gene073143:CDS
GGGTTTGAAATTGGAAATCA+AGG 0.468260 2.2:-13357431 MS.gene073143:CDS
GAGTAGAGAGATTGAAGAGG+AGG 0.472764 2.2:+13357318 None:intergenic
GACACAAACCTTGATCTTAG+AGG 0.473876 2.2:-13357041 MS.gene073143:CDS
AGTAGAGAGATTGAAGAGGA+GGG 0.474634 2.2:+13357319 None:intergenic
TAATAGAAGTAGTACCTTGA+GGG 0.475393 2.2:+13357126 None:intergenic
ATTGTCAAGTTTGTGGCAAA+GGG 0.476447 2.2:-13356722 MS.gene073143:CDS
TGAACTAGAAATTCCTTCCA+TGG 0.477549 2.2:+13357358 None:intergenic
GGACATCACCCGGTTATCAA+TGG 0.481764 2.2:-13356306 MS.gene073143:CDS
ATTTCAAGGACAACACCTCT+AGG 0.500290 2.2:-13357452 MS.gene073143:CDS
AGGATGCATATGAGAGCTCA+TGG 0.501614 2.2:-13356678 MS.gene073143:CDS
GATAAGCTTATGGGACATGT+TGG 0.504366 2.2:-13356339 MS.gene073143:CDS
TGACCATAGGAAACATTTGT+AGG 0.507771 2.2:+13357408 None:intergenic
TTTGTTTGTGGGACATCACC+CGG 0.508232 2.2:-13356316 MS.gene073143:CDS
GATGCCATTGCCAAATTCCA+TGG 0.512772 2.2:-13357375 MS.gene073143:CDS
ATGAGTCGGAACCATTGGAT+TGG 0.515560 2.2:-13356998 MS.gene073143:CDS
TGACTTCAAAGGTTGAAACT+TGG 0.516503 2.2:+13356530 None:intergenic
AGGCCTACAAATGTTTCCTA+TGG 0.518719 2.2:-13357411 MS.gene073143:CDS
CCTTCCATGGAATTTGGCAA+TGG 0.522098 2.2:+13357371 None:intergenic
TTGAAGAGGAGGGAATGGGA+GGG 0.522376 2.2:+13357329 None:intergenic
GGATGATATTGATGAACAAA+GGG 0.522652 2.2:-13356934 MS.gene073143:CDS
GCACAAATCAATGACTTCAA+AGG 0.522700 2.2:+13356519 None:intergenic
AAATATTCATGTCCTCAAGA+AGG 0.523706 2.2:-13356576 MS.gene073143:CDS
TTGACAATAATGTGTGTACT+TGG 0.534066 2.2:+13356737 None:intergenic
GGGTCATCTTATAATTGGGT+CGG 0.542248 2.2:-13356810 MS.gene073143:CDS
TCAAGAGGGATGCAAATTTG+AGG 0.543405 2.2:-13356698 MS.gene073143:CDS
AGGATGATATTGATGAACAA+AGG 0.545763 2.2:-13356935 MS.gene073143:CDS
TGAGAGTAGAGAGATTGAAG+AGG 0.548870 2.2:+13357315 None:intergenic
AATATTCATGTCCTCAAGAA+GGG 0.556447 2.2:-13356575 MS.gene073143:CDS
TTGTATTGTGGAGTTCATTG+TGG 0.558473 2.2:+13357208 None:intergenic
TAACATTAATTATAGGCTCA+AGG 0.571276 2.2:-13356955 MS.gene073143:CDS
TTCCATCTACACCCTTCTTG+AGG 0.572019 2.2:+13356564 None:intergenic
CTTTCATCAAACCAATCCAA+TGG 0.575007 2.2:+13356987 None:intergenic
TTTCAAGGACAACACCTCTA+GGG 0.577368 2.2:-13357451 MS.gene073143:CDS
GGAAACTAAGAGCAATCTGT+TGG 0.579939 2.2:+13357147 None:intergenic
CCATTGCCAAATTCCATGGA+AGG 0.581643 2.2:-13357371 MS.gene073143:CDS
ATGATAAACCATTGATAACC+GGG 0.588543 2.2:+13356298 None:intergenic
TTTGTGGCAAAGGGTTCAAG+AGG 0.595190 2.2:-13356713 MS.gene073143:CDS
ACAAGACTCATCAACTTCCA+TGG 0.595868 2.2:-13357237 MS.gene073143:CDS
ACAAATGTTTCCTATGGTCA+CGG 0.597671 2.2:-13357405 MS.gene073143:CDS
TTAATAGAAGTAGTACCTTG+AGG 0.605226 2.2:+13357125 None:intergenic
ATCAAATCTTCCGTGACCAT+AGG 0.609192 2.2:+13357395 None:intergenic
AACATTGTGGTGATCTTAGG+TGG 0.610982 2.2:-13356395 MS.gene073143:CDS
ATTGCTCTTAGTTTCCCTCA+AGG 0.618106 2.2:-13357140 MS.gene073143:CDS
AAACCAATAATAGTATAAGA+GGG 0.620427 2.2:-13356893 MS.gene073143:CDS
GGATGCATATGAGAGCTCAT+GGG 0.624368 2.2:-13356677 MS.gene073143:CDS
TGATGAGTCTTGTTGATTTG+GGG 0.633505 2.2:+13357247 None:intergenic
GCAAGTGAACATCATTGATG+TGG 0.636466 2.2:+13357169 None:intergenic
CCAAAATGTATGTATGCAAG+AGG 0.650780 2.2:-13356467 MS.gene073143:CDS
TTTCCAATTTCAAACCCTAG+AGG 0.662964 2.2:+13357437 None:intergenic
CTTAGGTGGCAATGTTCATG+TGG 0.663460 2.2:-13356381 MS.gene073143:CDS
GTTCATTGTGGATAATGCCA+TGG 0.667368 2.2:+13357220 None:intergenic
TGAGATAGTTGAATTGGACG+CGG 0.672074 2.2:-13356772 MS.gene073143:CDS
GATGCATATGAGAGCTCATG+GGG 0.685805 2.2:-13356676 MS.gene073143:CDS
TTGTGGCAAAGGGTTCAAGA+GGG 0.697728 2.2:-13356712 MS.gene073143:CDS
AGGACACATGAGAAACATTG+TGG 0.713628 2.2:-13356408 MS.gene073143:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAATAGTAACATTAATTAT+AGG - chr2.2:13356771-13356790 MS.gene073143:CDS 10.0%
!!! TCTAATATTCAATCAAATTT+TGG - chr2.2:13356662-13356681 MS.gene073143:CDS 15.0%
!! AAACCAATAATAGTATAAGA+GGG - chr2.2:13356840-13356859 MS.gene073143:CDS 20.0%
!! TAATCTCTATTCTTAGTAAT+TGG + chr2.2:13357115-13357134 None:intergenic 20.0%
!!! CATATTTTCTAATAATGAGT+CGG - chr2.2:13356721-13356740 MS.gene073143:CDS 20.0%
! AATTTGGGTCATCTTATAAT+TGG - chr2.2:13356918-13356937 MS.gene073143:CDS 25.0%
! ACGATACATGCTTAAAATTT+GGG - chr2.2:13356903-13356922 MS.gene073143:CDS 25.0%
! ATTTGGGTCATCTTATAATT+GGG - chr2.2:13356919-13356938 MS.gene073143:CDS 25.0%
! GAAACCAATAATAGTATAAG+AGG - chr2.2:13356839-13356858 MS.gene073143:CDS 25.0%
! TAACATTAATTATAGGCTCA+AGG - chr2.2:13356778-13356797 MS.gene073143:CDS 25.0%
! TACAATGATTTCTTGTATTG+TGG + chr2.2:13356540-13356559 None:intergenic 25.0%
!! TATGATAAACCATTGATAAC+CGG + chr2.2:13357439-13357458 None:intergenic 25.0%
AAATATTCATGTCCTCAAGA+AGG - chr2.2:13357157-13357176 MS.gene073143:CDS 30.0%
AAGCTTATCTTTCCTAGAAA+AGG + chr2.2:13357383-13357402 None:intergenic 30.0%
AATATTCATGTCCTCAAGAA+GGG - chr2.2:13357158-13357177 MS.gene073143:CDS 30.0%
ACACATTATTGTCAAGTTTG+TGG - chr2.2:13357004-13357023 MS.gene073143:CDS 30.0%
AGACCCTCTTATACTATTAT+TGG + chr2.2:13356846-13356865 None:intergenic 30.0%
AGGATGATATTGATGAACAA+AGG - chr2.2:13356798-13356817 MS.gene073143:CDS 30.0%
GACGATACATGCTTAAAATT+TGG - chr2.2:13356902-13356921 MS.gene073143:CDS 30.0%
GGATGATATTGATGAACAAA+GGG - chr2.2:13356799-13356818 MS.gene073143:CDS 30.0%
TAATAGAAGTAGTACCTTGA+GGG + chr2.2:13356610-13356629 None:intergenic 30.0%
TCTAGGAAAGATAAGCTTAT+GGG - chr2.2:13357385-13357404 MS.gene073143:CDS 30.0%
TGACAATGAGATAGTTGAAT+TGG - chr2.2:13356955-13356974 MS.gene073143:CDS 30.0%
TTAATAGAAGTAGTACCTTG+AGG + chr2.2:13356611-13356630 None:intergenic 30.0%
TTGACAATAATGTGTGTACT+TGG + chr2.2:13356999-13357018 None:intergenic 30.0%
! ATGATAAACCATTGATAACC+GGG + chr2.2:13357438-13357457 None:intergenic 30.0%
! CTCTTGCATACATACATTTT+GGG + chr2.2:13357268-13357287 None:intergenic 30.0%
! TTCTAGGAAAGATAAGCTTA+TGG - chr2.2:13357384-13357403 MS.gene073143:CDS 30.0%
! TTTCTGTTCTTTCTGATTTG+AGG - chr2.2:13357305-13357324 MS.gene073143:CDS 30.0%
!! TTGATGAGTCTTGTTGATTT+GGG + chr2.2:13356490-13356509 None:intergenic 30.0%
!!! ATTGCTGCTTTTGAAATTCT+TGG + chr2.2:13356643-13356662 None:intergenic 30.0%
AATCAAGTGCAAACTCTTGT+TGG - chr2.2:13356452-13356471 MS.gene073143:CDS 35.0%
ACAAATGTTTCCTATGGTCA+CGG - chr2.2:13356328-13356347 MS.gene073143:CDS 35.0%
ACTATCTCATTGTCACATTC+TGG + chr2.2:13356950-13356969 None:intergenic 35.0%
AGAAACATTGTGGTGATCTT+AGG - chr2.2:13357335-13357354 MS.gene073143:CDS 35.0%
ATTGTCAAGTTTGTGGCAAA+GGG - chr2.2:13357011-13357030 MS.gene073143:CDS 35.0%
CCAAAATGTATGTATGCAAG+AGG - chr2.2:13357266-13357285 MS.gene073143:CDS 35.0%
CTATCTCATTGTCACATTCT+GGG + chr2.2:13356949-13356968 None:intergenic 35.0%
CTTTCATCAAACCAATCCAA+TGG + chr2.2:13356749-13356768 None:intergenic 35.0%
GAAATTCCTTCCATGGAATT+TGG + chr2.2:13356371-13356390 None:intergenic 35.0%
GCACAAATCAATGACTTCAA+AGG + chr2.2:13357217-13357236 None:intergenic 35.0%
TAATAATGAGTCGGAACCAT+TGG - chr2.2:13356730-13356749 MS.gene073143:CDS 35.0%
TATTGTCAAGTTTGTGGCAA+AGG - chr2.2:13357010-13357029 MS.gene073143:CDS 35.0%
TGAACTAGAAATTCCTTCCA+TGG + chr2.2:13356378-13356397 None:intergenic 35.0%
TGACCATAGGAAACATTTGT+AGG + chr2.2:13356328-13356347 None:intergenic 35.0%
TGACTTCAAAGGTTGAAACT+TGG + chr2.2:13357206-13357225 None:intergenic 35.0%
TTGTATTGTGGAGTTCATTG+TGG + chr2.2:13356528-13356547 None:intergenic 35.0%
TTTCCAATTTCAAACCCTAG+AGG + chr2.2:13356299-13356318 None:intergenic 35.0%
! CCTCTTGCATACATACATTT+TGG + chr2.2:13357269-13357288 None:intergenic 35.0%
! GGGTTTGAAATTGGAAATCA+AGG - chr2.2:13356302-13356321 MS.gene073143:CDS 35.0%
! GTTGAAACTTGGCATGTTTT+TGG + chr2.2:13357195-13357214 None:intergenic 35.0%
!! GTTGATGAGTCTTGTTGATT+TGG + chr2.2:13356491-13356510 None:intergenic 35.0%
!! TGATGAGTCTTGTTGATTTG+GGG + chr2.2:13356489-13356508 None:intergenic 35.0%
AACATTGTGGTGATCTTAGG+TGG - chr2.2:13357338-13357357 MS.gene073143:CDS 40.0%
ACAAGACTCATCAACTTCCA+TGG - chr2.2:13356496-13356515 MS.gene073143:CDS 40.0%
AGGACACATGAGAAACATTG+TGG - chr2.2:13357325-13357344 MS.gene073143:CDS 40.0%
AGGCCTACAAATGTTTCCTA+TGG - chr2.2:13356322-13356341 MS.gene073143:CDS 40.0%
AGTAGAGAGATTGAAGAGGA+GGG + chr2.2:13356417-13356436 None:intergenic 40.0%
ATCAAATCTTCCGTGACCAT+AGG + chr2.2:13356341-13356360 None:intergenic 40.0%
ATTGCTCTTAGTTTCCCTCA+AGG - chr2.2:13356593-13356612 MS.gene073143:CDS 40.0%
ATTTCAAGGACAACACCTCT+AGG - chr2.2:13356281-13356300 MS.gene073143:CDS 40.0%
GACACAAACCTTGATCTTAG+AGG - chr2.2:13356692-13356711 MS.gene073143:CDS 40.0%
GATAAGCTTATGGGACATGT+TGG - chr2.2:13357394-13357413 MS.gene073143:CDS 40.0%
GCAAGTGAACATCATTGATG+TGG + chr2.2:13356567-13356586 None:intergenic 40.0%
GGAAACTAAGAGCAATCTGT+TGG + chr2.2:13356589-13356608 None:intergenic 40.0%
GGGTCATCTTATAATTGGGT+CGG - chr2.2:13356923-13356942 MS.gene073143:CDS 40.0%
GTTCATTGTGGATAATGCCA+TGG + chr2.2:13356516-13356535 None:intergenic 40.0%
TCAAGAGGGATGCAAATTTG+AGG - chr2.2:13357035-13357054 MS.gene073143:CDS 40.0%
TGAGAGTAGAGAGATTGAAG+AGG + chr2.2:13356421-13356440 None:intergenic 40.0%
TGAGATAGTTGAATTGGACG+CGG - chr2.2:13356961-13356980 MS.gene073143:CDS 40.0%
TTTCAAGGACAACACCTCTA+GGG - chr2.2:13356282-13356301 MS.gene073143:CDS 40.0%
!! ACACCTCTAGGGTTTGAAAT+TGG - chr2.2:13356293-13356312 MS.gene073143:CDS 40.0%
!! GGACATGTTGGTTTGTTTGT+GGG - chr2.2:13357406-13357425 MS.gene073143:CDS 40.0%
!! TGCTTTGACCTCTAAGATCA+AGG + chr2.2:13356703-13356722 None:intergenic 40.0%
AGAGATTGAAGAGGAGGGAA+TGG + chr2.2:13356412-13356431 None:intergenic 45.0%
AGGATGCATATGAGAGCTCA+TGG - chr2.2:13357055-13357074 MS.gene073143:CDS 45.0%
ATGAGTCGGAACCATTGGAT+TGG - chr2.2:13356735-13356754 MS.gene073143:CDS 45.0%
CCATTGCCAAATTCCATGGA+AGG - chr2.2:13356362-13356381 MS.gene073143:CDS 45.0%
CCTTCCATGGAATTTGGCAA+TGG + chr2.2:13356365-13356384 None:intergenic 45.0%
CTTAGGTGGCAATGTTCATG+TGG - chr2.2:13357352-13357371 MS.gene073143:CDS 45.0%
GAGATTGAAGAGGAGGGAAT+GGG + chr2.2:13356411-13356430 None:intergenic 45.0%
GAGTAGAGAGATTGAAGAGG+AGG + chr2.2:13356418-13356437 None:intergenic 45.0%
GATGCATATGAGAGCTCATG+GGG - chr2.2:13357057-13357076 MS.gene073143:CDS 45.0%
GATGCCATTGCCAAATTCCA+TGG - chr2.2:13356358-13356377 MS.gene073143:CDS 45.0%
GGATGCATATGAGAGCTCAT+GGG - chr2.2:13357056-13357075 MS.gene073143:CDS 45.0%
TTCCATCTACACCCTTCTTG+AGG + chr2.2:13357172-13357191 None:intergenic 45.0%
TTGTGGCAAAGGGTTCAAGA+GGG - chr2.2:13357021-13357040 MS.gene073143:CDS 45.0%
TTTGTGGCAAAGGGTTCAAG+AGG - chr2.2:13357020-13357039 MS.gene073143:CDS 45.0%
TTTGTTTGTGGGACATCACC+CGG - chr2.2:13357417-13357436 MS.gene073143:CDS 45.0%
! CATGTGGCACTACCTTTTCT+AGG - chr2.2:13357368-13357387 MS.gene073143:CDS 45.0%
!! GGGACATGTTGGTTTGTTTG+TGG - chr2.2:13357405-13357424 MS.gene073143:CDS 45.0%
ATTGAAGAGGAGGGAATGGG+AGG + chr2.2:13356408-13356427 None:intergenic 50.0%
GGACATCACCCGGTTATCAA+TGG - chr2.2:13357427-13357446 MS.gene073143:CDS 50.0%
TTGAAGAGGAGGGAATGGGA+GGG + chr2.2:13356407-13356426 None:intergenic 50.0%
! GTCCTCAAGAAGGGTGTAGA+TGG - chr2.2:13357167-13357186 MS.gene073143:CDS 50.0%


Chromosome Type Strat End Strand Name
chr2.2 gene 13356278 13357477 13356278 ID=MS.gene073143
chr2.2 mRNA 13356278 13357477 13356278 ID=MS.gene073143.t1;Parent=MS.gene073143
chr2.2 exon 13356278 13357477 13356278 ID=MS.gene073143.t1.exon1;Parent=MS.gene073143.t1
chr2.2 CDS 13356278 13357477 13356278 ID=cds.MS.gene073143.t1;Parent=MS.gene073143.t1
Gene Sequence

>MS.gene073143

ATGATTTCAAGGACAACACCTCTAGGGTTTGAAATTGGAAATCAAGGCCTACAAATGTTTCCTATGGTCACGGAAGATTTGATGCCATTGCCAAATTCCATGGAAGGAATTTCTAGTTCAACTTTACCCTCCCATTCCCTCCTCTTCAATCTCTCTACTCTCAAAGACAAGCTCAATCAAGTGCAAACTCTTGTTGGTGTCATTCTCTCCCCAAATCAACAAGACTCATCAACTTCCATGGCATTATCCACAATGAACTCCACAATACAAGAAATCATTGTAACTTCCACATCAATGATGTTCACTTGCCAACAGATTGCTCTTAGTTTCCCTCAAGGTACTACTTCTATTAAATGTACAAACCAAGAATTTCAAAAGCAGCAATCTAATATTCAATCAAATTTTGGCAACAATGACACAAACCTTGATCTTAGAGGTCAAAGCATATTTTCTAATAATGAGTCGGAACCATTGGATTGGTTTGATGAAAGCTATAATAGTAACATTAATTATAGGCTCAAGGATGATATTGATGAACAAAGGGTTGATAATGAAATTAGTGAAACCAATAATAGTATAAGAGGGTCTAATGAAGATATTTCAACGAAGAATAATTCTGATCGTGACGATACATGCTTAAAATTTGGGTCATCTTATAATTGGGTCGGCCCAGAATGTGACAATGAGATAGTTGAATTGGACGCGGCTGATTTATTAGCCAAGTACACACATTATTGTCAAGTTTGTGGCAAAGGGTTCAAGAGGGATGCAAATTTGAGGATGCATATGAGAGCTCATGGGGATGAGTACAAGAGTAGTGCAGCATTGAGCAATCCAATTACTAAGAATAGAGATTATTTGATGAGTATGAAAAATAAGAAATATTCATGTCCTCAAGAAGGGTGTAGATGGAACCAAAAACATGCCAAGTTTCAACCTTTGAAGTCATTGATTTGTGCTAAGAATCATTACAAGAGAAGTCATTGTCCCAAAATGTATGTATGCAAGAGGTGTAATTTGAAGCAATTTTCTGTTCTTTCTGATTTGAGGACACATGAGAAACATTGTGGTGATCTTAGGTGGCAATGTTCATGTGGCACTACCTTTTCTAGGAAAGATAAGCTTATGGGACATGTTGGTTTGTTTGTGGGACATCACCCGGTTATCAATGGTTTATCATATAGTACTCACACAAGTTAG
Protein sequence

>MS.gene073143.t1

MISRTTPLGFEIGNQGLQMFPMVTEDLMPLPNSMEGISSSTLPSHSLLFNLSTLKDKLNQVQTLVGVILSPNQQDSSTSMALSTMNSTIQEIIVTSTSMMFTCQQIALSFPQGTTSIKCTNQEFQKQQSNIQSNFGNNDTNLDLRGQSIFSNNESEPLDWFDESYNSNINYRLKDDIDEQRVDNEISETNNSIRGSNEDISTKNNSDRDDTCLKFGSSYNWVGPECDNEIVELDAADLLAKYTHYCQVCGKGFKRDANLRMHMRAHGDEYKSSAALSNPITKNRDYLMSMKNKKYSCPQEGCRWNQKHAKFQPLKSLICAKNHYKRSHCPKMYVCKRCNLKQFSVLSDLRTHEKHCGDLRWQCSCGTTFSRKDKLMGHVGLFVGHHPVINGLSYSTHTS