Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene073355.t1 | XP_013463250.1 | 97.8 | 858 | 14 | 1 | 1 | 858 | 228 | 1080 | 0.00E+00 | 1712.6 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene073355.t1 | Q8RXK8 | 75.0 | 859 | 205 | 5 | 1 | 858 | 241 | 1090 | 0.0e+00 | 1360.5 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene073355.t1 | A0A072V611 | 97.8 | 858 | 14 | 1 | 1 | 858 | 228 | 1080 | 0.0e+00 | 1712.6 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene058323 | MS.gene073355 | 0.8067 | 7.24E-50 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene073355 | MS.gene063765 | PPI |
MS.gene063767 | MS.gene073355 | PPI |
MS.gene030204 | MS.gene073355 | PPI |
MS.gene073355 | MS.gene26744 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene073355.t1 | MTR_2g436760 | 97.786 | 858 | 14 | 1 | 1 | 858 | 228 | 1080 | 0.0 | 1745 |
MS.gene073355.t1 | MTR_4g076850 | 26.099 | 728 | 433 | 23 | 1 | 673 | 138 | 815 | 4.23e-56 | 210 |
MS.gene073355.t1 | MTR_6g027620 | 25.825 | 697 | 390 | 16 | 1 | 674 | 200 | 792 | 3.15e-54 | 204 |
MS.gene073355.t1 | MTR_1g101620 | 23.886 | 561 | 357 | 18 | 188 | 700 | 358 | 896 | 1.80e-29 | 126 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene073355.t1 | AT5G49030 | 75.087 | 859 | 204 | 5 | 1 | 858 | 427 | 1276 | 0.0 | 1369 |
MS.gene073355.t1 | AT5G49030 | 75.087 | 859 | 204 | 5 | 1 | 858 | 241 | 1090 | 0.0 | 1363 |
MS.gene073355.t1 | AT5G49030 | 78.412 | 718 | 147 | 3 | 1 | 717 | 241 | 951 | 0.0 | 1189 |
MS.gene073355.t1 | AT4G10320 | 26.462 | 718 | 444 | 19 | 1 | 673 | 138 | 816 | 2.35e-60 | 223 |
MS.gene073355.t1 | AT5G16715 | 26.165 | 558 | 344 | 14 | 194 | 731 | 318 | 827 | 2.09e-43 | 171 |
MS.gene073355.t1 | AT1G14610 | 23.538 | 684 | 431 | 23 | 188 | 819 | 396 | 1039 | 4.53e-32 | 135 |
Find 209 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AAGAGACTCCCTTGGCTTTC+CGG | 0.179744 | 2.4:-54824392 | MS.gene073355:CDS |
CAAATGGCCAAACACAAATT+TGG | 0.180556 | 2.4:+54827966 | None:intergenic |
CAAATTTGTGTTTGGCCATT+TGG | 0.194064 | 2.4:-54827965 | MS.gene073355:CDS |
CTTTACTGTTACCCTGAATT+AGG | 0.221861 | 2.4:+54819888 | None:intergenic |
TTTCAATATACAACCGAATA+TGG | 0.247537 | 2.4:-54821595 | MS.gene073355:CDS |
ACATCCATCCAGTAGATAAT+AGG | 0.247871 | 2.4:-54825943 | MS.gene073355:CDS |
ACCATGCATCACTACCCTTT+TGG | 0.253122 | 2.4:+54824869 | None:intergenic |
ATCATCTACTGGAGATAGTA+TGG | 0.254048 | 2.4:+54825802 | None:intergenic |
ATGCTATTGGCGGTGTAAAA+TGG | 0.260951 | 2.4:-54825452 | MS.gene073355:CDS |
TGCCAACGTTAGAGGCAAAA+TGG | 0.262283 | 2.4:-54826179 | MS.gene073355:CDS |
AGCTGATGTCCTGCGGCTTT+GGG | 0.271747 | 2.4:-54822644 | MS.gene073355:CDS |
CACTGCTGTTGTGAAATATT+TGG | 0.280637 | 2.4:-54825717 | MS.gene073355:CDS |
GAGCTGATGTCCTGCGGCTT+TGG | 0.284206 | 2.4:-54822645 | MS.gene073355:CDS |
GTCAAATATCGGAAGTTTAC+CGG | 0.286320 | 2.4:-54822570 | MS.gene073355:CDS |
GTCTGCAGCGCTTTGGAGTA+TGG | 0.294011 | 2.4:-54829472 | None:intergenic |
AGAACTTGTGCCAACGTTAG+AGG | 0.303488 | 2.4:-54826187 | MS.gene073355:CDS |
AAGGCTGTTGGGCTCTGATT+TGG | 0.316359 | 2.4:-54826133 | MS.gene073355:CDS |
TTCAGCAAAGGAACCATATT+CGG | 0.317688 | 2.4:+54821582 | None:intergenic |
TAGTGGTGAATGCCTAATTC+AGG | 0.321767 | 2.4:-54819900 | MS.gene073355:CDS |
GGGATTCCGTGAAGCTTCTA+TGG | 0.322574 | 2.4:-54825475 | MS.gene073355:CDS |
ATGCCAACATCTTTCACATT+TGG | 0.342388 | 2.4:+54819835 | None:intergenic |
AGCACTTGCAATTCTGAAAA+TGG | 0.348750 | 2.4:+54828022 | None:intergenic |
TGAGTTAAAACAGAAGAATA+TGG | 0.349534 | 2.4:+54822867 | None:intergenic |
TTTAGTGGACTTGATGTTCT+TGG | 0.350017 | 2.4:-54825749 | MS.gene073355:CDS |
ATGGATGTGTGGTTTGATTC+AGG | 0.350370 | 2.4:-54824769 | MS.gene073355:intron |
AGAATTCCCAAATTTGTGTT+TGG | 0.351444 | 2.4:-54827973 | MS.gene073355:CDS |
TCTGTTGCTCTAAATATTGT+TGG | 0.359250 | 2.4:+54825519 | None:intergenic |
TCTTGCTGAAGCCGAGTTAG+AGG | 0.363187 | 2.4:-54829019 | MS.gene073355:intron |
GGGAATGTCCGGTCGTAGTT+GGG | 0.365307 | 2.4:-54825922 | MS.gene073355:CDS |
TCAGCTAAGTGGGGCAATAT+TGG | 0.367888 | 2.4:+54821640 | None:intergenic |
ACCTGGGCAGCTTCATATTC+CGG | 0.369013 | 2.4:+54829416 | None:intergenic |
ACGAACTTCCGAGGATTGAT+AGG | 0.373909 | 2.4:-54822341 | MS.gene073355:CDS |
GGAAGTTTACCGGAAGTTAC+GGG | 0.374435 | 2.4:-54822560 | MS.gene073355:CDS |
TTTAACTCATGGATTTGTAT+TGG | 0.376110 | 2.4:-54822853 | MS.gene073355:CDS |
CCGGCAGACTTGTATCTTGA+AGG | 0.377749 | 2.4:-54824373 | MS.gene073355:CDS |
CCCAACATATAATCGATCTT+TGG | 0.380587 | 2.4:+54821918 | None:intergenic |
TCAAATTCTTCGTCAAATAT+CGG | 0.386996 | 2.4:-54822581 | MS.gene073355:CDS |
GTGAACCTTTGCATCTAAAC+TGG | 0.388723 | 2.4:+54820470 | None:intergenic |
ATTAGGCATTCACCACTATA+TGG | 0.390707 | 2.4:+54819905 | None:intergenic |
TATTCGGTTGTATATTGAAA+TGG | 0.391154 | 2.4:+54821598 | None:intergenic |
TGTAAAATGGGTTCCACCTC+AGG | 0.393018 | 2.4:-54825439 | MS.gene073355:intron |
CACAGTTCAATTTCTTCAGC+AGG | 0.397454 | 2.4:+54821508 | None:intergenic |
GAAGAAGCTGGGCAGTTTAG+TGG | 0.398281 | 2.4:-54825764 | MS.gene073355:CDS |
CATCCATCCAGTAGATAATA+GGG | 0.398599 | 2.4:-54825942 | MS.gene073355:CDS |
AAATGGCCAAACACAAATTT+GGG | 0.402978 | 2.4:+54827967 | None:intergenic |
AATTTGTATTCGAATCTAGA+TGG | 0.406223 | 2.4:-54821561 | MS.gene073355:CDS |
GTCAGCTATTATAGCCCAAA+AGG | 0.408308 | 2.4:-54824884 | MS.gene073355:intron |
CTATCTCCAGTAGATGATAA+TGG | 0.408603 | 2.4:-54825797 | MS.gene073355:CDS |
AGTAGGTCACTCGGCATTAG+AGG | 0.409404 | 2.4:+54827999 | None:intergenic |
GGAAAATTCACTGAAGAAGC+TGG | 0.411974 | 2.4:-54825776 | MS.gene073355:CDS |
CCAAAGATCGATTATATGTT+GGG | 0.412929 | 2.4:-54821918 | MS.gene073355:intron |
CGGAAGTTTACCGGAAGTTA+CGG | 0.414153 | 2.4:-54822561 | MS.gene073355:CDS |
GATTATATTACAACAGAAAC+AGG | 0.417354 | 2.4:-54825896 | MS.gene073355:CDS |
TTCCGGATCTAGAGTAAGAT+AGG | 0.419289 | 2.4:+54829433 | None:intergenic |
GCCAACGTTAGAGGCAAAAT+GGG | 0.423649 | 2.4:-54826178 | MS.gene073355:CDS |
TGAAAATTTGTCACTCATCA+TGG | 0.429326 | 2.4:-54825693 | MS.gene073355:CDS |
GGCTGAGATTCTTCCTTCAC+TGG | 0.431602 | 2.4:-54819951 | MS.gene073355:CDS |
AGGGAATGTCCGGTCGTAGT+TGG | 0.431863 | 2.4:-54825923 | MS.gene073355:CDS |
TTAAAGTTCCCCGTAACTTC+CGG | 0.441014 | 2.4:+54822551 | None:intergenic |
TAAAGCTGCTGAATATGAAA+AGG | 0.444367 | 2.4:-54824803 | MS.gene073355:CDS |
GACGAGGGACTCCAGTGAAC+AGG | 0.448070 | 2.4:+54829051 | None:intergenic |
AATTTGGGAATTCTTGTAGT+AGG | 0.448385 | 2.4:+54827982 | None:intergenic |
CAATGGTTTGCATCGGTTGA+GGG | 0.450860 | 2.4:-54825495 | MS.gene073355:CDS |
GCTTTATCACGATAATTAGC+TGG | 0.451049 | 2.4:+54824820 | None:intergenic |
ATTGTCTCTTCATTCATAAG+AGG | 0.454350 | 2.4:+54825184 | None:intergenic |
TATAGCCTTTCAAGGCCATC+TGG | 0.456459 | 2.4:+54829091 | None:intergenic |
AATGAACATGACTCTTCATC+TGG | 0.463018 | 2.4:-54826279 | MS.gene073355:CDS |
GACCATGTCCAGGAGCTGTA+TGG | 0.465784 | 2.4:+54825861 | None:intergenic |
GTTGCTGTTCAGATGCCCTC+TGG | 0.466928 | 2.4:-54819749 | MS.gene073355:CDS |
GCAATGGTTTGCATCGGTTG+AGG | 0.467108 | 2.4:-54825496 | MS.gene073355:CDS |
TCTCAGGAAGCACCTGCATA+TGG | 0.467513 | 2.4:-54822667 | MS.gene073355:intron |
AACAACATCGTATTCAAGCT+TGG | 0.470716 | 2.4:+54826317 | None:intergenic |
AACACAAGTATCCGTATGAT+TGG | 0.471345 | 2.4:-54825554 | MS.gene073355:CDS |
GCCAAAGATCGATTATATGT+TGG | 0.471553 | 2.4:-54821919 | MS.gene073355:CDS |
TGTACATAGTTCAGATAGCT+TGG | 0.472440 | 2.4:+54820419 | None:intergenic |
GGACATTCCCTATTATCTAC+TGG | 0.473554 | 2.4:+54825935 | None:intergenic |
TGCTATTGGCGGTGTAAAAT+GGG | 0.473944 | 2.4:-54825451 | MS.gene073355:CDS |
AGAGGTGAATAGAGTGTTGG+AGG | 0.474272 | 2.4:-54820520 | MS.gene073355:CDS |
TCCCTATCTTACTCTAGATC+CGG | 0.475644 | 2.4:-54829435 | MS.gene073355:CDS |
GTTTCTAGTGTAGATTATAC+CGG | 0.476051 | 2.4:-54822622 | MS.gene073355:CDS |
TAAGTTATTCATAACATCTC+AGG | 0.479698 | 2.4:-54820370 | MS.gene073355:intron |
TATGTGACTGGTCAGAAGTA+CGG | 0.480115 | 2.4:-54825830 | MS.gene073355:CDS |
GATATTTGACGAAGAATTTG+AGG | 0.483062 | 2.4:+54822583 | None:intergenic |
TGACCTCCAGCCGCTCTGAT+TGG | 0.484162 | 2.4:-54825273 | MS.gene073355:CDS |
GGATTTGTATTGGACGAGAA+AGG | 0.486096 | 2.4:-54822843 | MS.gene073355:CDS |
TGAAAAGGGAACTGATACAA+TGG | 0.487025 | 2.4:-54824788 | MS.gene073355:CDS |
AGCCATCTTTCATTCAAAGT+TGG | 0.487386 | 2.4:+54821538 | None:intergenic |
GATTGAAGTATTTGGCCAGA+TGG | 0.493116 | 2.4:-54829106 | MS.gene073355:CDS |
GAAGCTTCTATGGATGCTAT+TGG | 0.497496 | 2.4:-54825465 | MS.gene073355:CDS |
GCTCTGATTTGGAAAACTAC+AGG | 0.498287 | 2.4:-54826122 | MS.gene073355:intron |
AACAGAGGTGAATAGAGTGT+TGG | 0.504672 | 2.4:-54820523 | MS.gene073355:CDS |
TCGGTAGATATAGCCTTTCA+AGG | 0.504963 | 2.4:+54829083 | None:intergenic |
CCATGGAGTAGTAGTCCAAA+TGG | 0.506841 | 2.4:+54827950 | None:intergenic |
TAGCATCCATAGAAGCTTCA+CGG | 0.507241 | 2.4:+54825469 | None:intergenic |
GGACTGGTCCATACAGCTCC+TGG | 0.507901 | 2.4:-54825869 | MS.gene073355:CDS |
GTTGCAAATATACCATATAG+TGG | 0.509587 | 2.4:-54819917 | MS.gene073355:CDS |
CTAACTAGTATAGCTACAAC+AGG | 0.514075 | 2.4:-54824313 | MS.gene073355:intron |
TCTGCAGCGCTTTGGAGTAT+GGG | 0.514714 | 2.4:-54829471 | None:intergenic |
AGTAGATAATAGGGAATGTC+CGG | 0.514933 | 2.4:-54825933 | MS.gene073355:CDS |
ATTACAACAGAAACAGGAAC+AGG | 0.515186 | 2.4:-54825890 | MS.gene073355:CDS |
GGCCAACTTTGAATGAAAGA+TGG | 0.515207 | 2.4:-54821540 | MS.gene073355:CDS |
CTATTACTCTTACAATAGAA+AGG | 0.517052 | 2.4:+54821665 | None:intergenic |
GGGAACTTTAAGATACCTCT+TGG | 0.520121 | 2.4:-54822539 | MS.gene073355:CDS |
AGATAGCTTGGATGCCATGA+TGG | 0.521438 | 2.4:+54820431 | None:intergenic |
TGGACTATTCCTGCCAATGC+AGG | 0.522305 | 2.4:-54827930 | MS.gene073355:intron |
AATGAATGTCTGCAGCGCTT+TGG | 0.522628 | 2.4:-54829479 | None:intergenic |
TGCTGAAGAAATTGAACTGT+GGG | 0.524557 | 2.4:-54821506 | MS.gene073355:CDS |
CCACACATCCTCAGCTAAGT+GGG | 0.524734 | 2.4:+54821630 | None:intergenic |
ATGTGACTGGTCAGAAGTAC+GGG | 0.524951 | 2.4:-54825829 | MS.gene073355:CDS |
GGAATGTCCGGTCGTAGTTG+GGG | 0.525634 | 2.4:-54825921 | MS.gene073355:CDS |
TATACCGGGGATGTGATGAT+TGG | 0.527253 | 2.4:-54822607 | MS.gene073355:CDS |
GAGACAATTGAGCATATCAA+TGG | 0.528661 | 2.4:-54825169 | MS.gene073355:intron |
ATATTTGACGAAGAATTTGA+GGG | 0.529870 | 2.4:+54822584 | None:intergenic |
GAAAACCTACCTGCATTGGC+AGG | 0.531642 | 2.4:+54827921 | None:intergenic |
GAGGCAGAAAACCTGTTCAC+TGG | 0.532226 | 2.4:-54829062 | MS.gene073355:CDS |
GCTTTGGAGTATGGGCTGAC+TGG | 0.532411 | 2.4:-54829463 | MS.gene073355:CDS |
TAGCAGCGGCTGCAAAGAGT+AGG | 0.535679 | 2.4:+54819779 | None:intergenic |
AGGACATCAGCTCCATATGC+AGG | 0.535831 | 2.4:+54822655 | None:intergenic |
CCATTTGGACTACTACTCCA+TGG | 0.539779 | 2.4:-54827950 | MS.gene073355:CDS |
TATACACCAATCAGAGCGGC+TGG | 0.541690 | 2.4:+54825267 | None:intergenic |
TGGTGCCAGTTTAGATGCAA+AGG | 0.543237 | 2.4:-54820475 | MS.gene073355:CDS |
AAAGCTGCTGAATATGAAAA+GGG | 0.545145 | 2.4:-54824802 | MS.gene073355:CDS |
AGTGGTGAATGCCTAATTCA+GGG | 0.548812 | 2.4:-54819899 | MS.gene073355:CDS |
GGTCAAGAAGATTATGTGAC+TGG | 0.551567 | 2.4:-54825842 | MS.gene073355:CDS |
AATAGAAAACCTACCTGCAT+TGG | 0.553171 | 2.4:+54827917 | None:intergenic |
TCTTGGCAAATCTTCACGAC+TGG | 0.553274 | 2.4:-54822522 | MS.gene073355:CDS |
AACAGAGCAATGGTTTGCAT+CGG | 0.561582 | 2.4:-54825502 | MS.gene073355:CDS |
CACTAGAAACCCAAAGCCGC+AGG | 0.562466 | 2.4:+54822635 | None:intergenic |
CCTTCAAGATACAAGTCTGC+CGG | 0.562609 | 2.4:+54824373 | None:intergenic |
GGTAACAGTAAAGTGTGGAT+TGG | 0.562975 | 2.4:-54819878 | MS.gene073355:CDS |
TTTCTAGTGTAGATTATACC+GGG | 0.565743 | 2.4:-54822621 | MS.gene073355:CDS |
GTTTCTATGTAGTACCCTGA+AGG | 0.565880 | 2.4:-54828068 | MS.gene073355:intron |
TTATACATCTGATTCCATCA+TGG | 0.566475 | 2.4:-54820445 | MS.gene073355:CDS |
TTTGGCCAGATGGCCTTGAA+AGG | 0.566596 | 2.4:-54829096 | MS.gene073355:CDS |
TTTAAATGCAATACCTGAGG+TGG | 0.568883 | 2.4:+54825426 | None:intergenic |
ACAAGTCTGCCGGAAAGCCA+AGG | 0.571077 | 2.4:+54824383 | None:intergenic |
CTTAAAGATGAGCAAGTCTG+TGG | 0.571334 | 2.4:-54822820 | MS.gene073355:CDS |
GCCACACATCCTCAGCTAAG+TGG | 0.571682 | 2.4:+54821629 | None:intergenic |
CTTTATCACGATAATTAGCT+GGG | 0.571752 | 2.4:+54824821 | None:intergenic |
GAAAATTCACTGAAGAAGCT+GGG | 0.574853 | 2.4:-54825775 | MS.gene073355:CDS |
TTCACTGGAGTCCCTCGTCA+CGG | 0.576013 | 2.4:-54829047 | MS.gene073355:CDS |
TCCGGAATATGAAGCTGCCC+AGG | 0.576526 | 2.4:-54829417 | MS.gene073355:intron |
TAATCTTCTTGACCATGTCC+AGG | 0.578269 | 2.4:+54825851 | None:intergenic |
AAATCAGTTTACCTCTAACT+CGG | 0.578892 | 2.4:+54829008 | None:intergenic |
ACAAGTATCCGTATGATTGG+CGG | 0.580252 | 2.4:-54825551 | MS.gene073355:CDS |
ATTCCCTATTATCTACTGGA+TGG | 0.580281 | 2.4:+54825939 | None:intergenic |
AAGGAACAGATCAGCATCGA+GGG | 0.580658 | 2.4:-54824354 | MS.gene073355:CDS |
GCAAGAGCTGTCCGTGACGA+GGG | 0.580885 | 2.4:+54829036 | None:intergenic |
CATCAAAATAGAAACTTGAA+AGG | 0.581840 | 2.4:+54821944 | None:intergenic |
TCAGCTATTATAGCCCAAAA+GGG | 0.581918 | 2.4:-54824883 | MS.gene073355:intron |
GTCCATACAGCTCCTGGACA+TGG | 0.584702 | 2.4:-54825863 | MS.gene073355:CDS |
GTATATCACGACAAAGGACA+TGG | 0.585385 | 2.4:-54825249 | MS.gene073355:CDS |
GGACTTGATGTTCTTGGTGA+AGG | 0.585850 | 2.4:-54825743 | MS.gene073355:CDS |
AATGCATGCCTATCAATCCT+CGG | 0.585996 | 2.4:+54822333 | None:intergenic |
TATTTAGAGCAACAGAGCAA+TGG | 0.586768 | 2.4:-54825512 | MS.gene073355:CDS |
TTCGAATACAAATTCAGCAA+AGG | 0.586970 | 2.4:+54821570 | None:intergenic |
AACAGAAACAGGAACAGGAC+TGG | 0.587200 | 2.4:-54825885 | MS.gene073355:CDS |
AGCAGCTACTTCAGAGCCAG+AGG | 0.588709 | 2.4:+54819733 | None:intergenic |
AGCAAGAGCTGTCCGTGACG+AGG | 0.588968 | 2.4:+54829035 | None:intergenic |
AGCAGCGGCTGCAAAGAGTA+GGG | 0.590710 | 2.4:+54819780 | None:intergenic |
GTTCCAAATGTGAAAGATGT+TGG | 0.592042 | 2.4:-54819838 | MS.gene073355:CDS |
TTCAATACGACGAACTTCCG+AGG | 0.592552 | 2.4:-54822350 | MS.gene073355:CDS |
TGGCATTATTCACACCAAGT+TGG | 0.594634 | 2.4:-54819818 | MS.gene073355:CDS |
ACATGTTCATCTTCCAGTGA+AGG | 0.594763 | 2.4:+54819938 | None:intergenic |
CCCACTTAGCTGAGGATGTG+TGG | 0.596456 | 2.4:-54821630 | MS.gene073355:CDS |
AGGGCCAATCATCACATCCC+CGG | 0.596642 | 2.4:+54822603 | None:intergenic |
TCCGGATCTAGAGTAAGATA+GGG | 0.598551 | 2.4:+54829434 | None:intergenic |
GGTGAATAGAGTGTTGGAGG+TGG | 0.600036 | 2.4:-54820517 | MS.gene073355:CDS |
CCCAAAAGGGTAGTGATGCA+TGG | 0.600068 | 2.4:-54824870 | MS.gene073355:CDS |
TCATCTACTGGAGATAGTAT+GGG | 0.601319 | 2.4:+54825803 | None:intergenic |
GCATTGGCAGGAATAGTCCA+TGG | 0.603212 | 2.4:+54827933 | None:intergenic |
GCTTCTATGGATGCTATTGG+CGG | 0.606146 | 2.4:-54825462 | MS.gene073355:CDS |
TTTCTATGTAGTACCCTGAA+GGG | 0.612326 | 2.4:-54828067 | MS.gene073355:intron |
CCTCCTTCAATCACACTACG+TGG | 0.612807 | 2.4:+54822783 | None:intergenic |
ATTGGTATATCTCGTGCTAG+TGG | 0.618281 | 2.4:-54819860 | MS.gene073355:CDS |
GAAGTTTACCGGAAGTTACG+GGG | 0.625725 | 2.4:-54822559 | MS.gene073355:CDS |
GATCCACGTAGTGTGATTGA+AGG | 0.626229 | 2.4:-54822786 | MS.gene073355:CDS |
GAATGTCCGGTCGTAGTTGG+GGG | 0.628149 | 2.4:-54825920 | MS.gene073355:CDS |
GTGGATCGACTAGTTATACA+AGG | 0.629327 | 2.4:-54821720 | MS.gene073355:CDS |
CCACGTAGTGTGATTGAAGG+AGG | 0.629567 | 2.4:-54822783 | MS.gene073355:CDS |
TTCAGGGTAACAGTAAAGTG+TGG | 0.630750 | 2.4:-54819883 | MS.gene073355:CDS |
AATTCTTGTAGTAGGTCACT+CGG | 0.632605 | 2.4:+54827990 | None:intergenic |
CAAGTCTGCCGGAAAGCCAA+GGG | 0.632939 | 2.4:+54824384 | None:intergenic |
TCTCAAGACTGCAGCCCAGG+AGG | 0.637498 | 2.4:+54824417 | None:intergenic |
CTGCTGAAGAAATTGAACTG+TGG | 0.638800 | 2.4:-54821507 | MS.gene073355:CDS |
AGTCGTGAAGATTTGCCAAG+AGG | 0.643848 | 2.4:+54822524 | None:intergenic |
TATATCACGACAAAGGACAT+GGG | 0.643904 | 2.4:-54825248 | MS.gene073355:CDS |
CAAGTCTGTGGGTAATGTTG+TGG | 0.647942 | 2.4:-54822808 | MS.gene073355:CDS |
TTAAAGATGAGCAAGTCTGT+GGG | 0.652621 | 2.4:-54822819 | MS.gene073355:CDS |
ACACCAATCAGAGCGGCTGG+AGG | 0.674444 | 2.4:+54825270 | None:intergenic |
GAACAGATCAGCATCGAGGG+TGG | 0.677211 | 2.4:-54824351 | MS.gene073355:CDS |
CAGCAACAACATCATAGCAG+CGG | 0.678013 | 2.4:+54819765 | None:intergenic |
TTCTAGTGTAGATTATACCG+GGG | 0.683189 | 2.4:-54822620 | MS.gene073355:CDS |
ATTGGTGTATATCACGACAA+AGG | 0.684504 | 2.4:-54825255 | MS.gene073355:CDS |
TTGAAAGGCTATATCTACCG+AGG | 0.685038 | 2.4:-54829081 | MS.gene073355:CDS |
AATATTGCCCCACTTAGCTG+AGG | 0.685385 | 2.4:-54821638 | MS.gene073355:CDS |
CATATGGAGCTGATGTCCTG+CGG | 0.691014 | 2.4:-54822651 | MS.gene073355:CDS |
GCAGCTACTTCAGAGCCAGA+GGG | 0.691101 | 2.4:+54819734 | None:intergenic |
CACACATCCTCAGCTAAGTG+GGG | 0.691417 | 2.4:+54821631 | None:intergenic |
AGCGGCTGCAAAGAGTAGGG+TGG | 0.701928 | 2.4:+54819783 | None:intergenic |
TATCACGATAATTAGCTGGG+AGG | 0.702391 | 2.4:+54824824 | None:intergenic |
GAAGGAACAGATCAGCATCG+AGG | 0.705965 | 2.4:-54824355 | MS.gene073355:CDS |
CCAACGTTAGAGGCAAAATG+GGG | 0.706136 | 2.4:-54826177 | MS.gene073355:CDS |
GGTCTGAAAATGAACCAACT+TGG | 0.706446 | 2.4:+54819804 | None:intergenic |
GAACTGATACAATGGATGTG+TGG | 0.725989 | 2.4:-54824780 | MS.gene073355:CDS |
ATATCACGACAAAGGACATG+GGG | 0.726009 | 2.4:-54825247 | MS.gene073355:CDS |
AAAAGGGTAGTGATGCATGG+TGG | 0.733413 | 2.4:-54824867 | MS.gene073355:CDS |
GTGATATACACCAATCAGAG+CGG | 0.748819 | 2.4:+54825263 | None:intergenic |
ACTGTGGGAAAAGATTCTCG+AGG | 0.794104 | 2.4:-54821491 | MS.gene073355:intron |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.4 | gene | 54819724 | 54829486 | 54819724 | ID=MS.gene073355 |
chr2.4 | mRNA | 54819724 | 54829486 | 54819724 | ID=MS.gene073355.t1;Parent=MS.gene073355 |
chr2.4 | exon | 54829418 | 54829486 | 54829418 | ID=MS.gene073355.t1.exon1;Parent=MS.gene073355.t1 |
chr2.4 | CDS | 54829418 | 54829486 | 54829418 | ID=cds.MS.gene073355.t1;Parent=MS.gene073355.t1 |
chr2.4 | exon | 54829020 | 54829127 | 54829020 | ID=MS.gene073355.t1.exon2;Parent=MS.gene073355.t1 |
chr2.4 | CDS | 54829020 | 54829127 | 54829020 | ID=cds.MS.gene073355.t1;Parent=MS.gene073355.t1 |
chr2.4 | exon | 54827931 | 54828078 | 54827931 | ID=MS.gene073355.t1.exon3;Parent=MS.gene073355.t1 |
chr2.4 | CDS | 54827931 | 54828078 | 54827931 | ID=cds.MS.gene073355.t1;Parent=MS.gene073355.t1 |
chr2.4 | exon | 54826123 | 54826354 | 54826123 | ID=MS.gene073355.t1.exon4;Parent=MS.gene073355.t1 |
chr2.4 | CDS | 54826123 | 54826354 | 54826123 | ID=cds.MS.gene073355.t1;Parent=MS.gene073355.t1 |
chr2.4 | exon | 54825681 | 54825967 | 54825681 | ID=MS.gene073355.t1.exon5;Parent=MS.gene073355.t1 |
chr2.4 | CDS | 54825681 | 54825967 | 54825681 | ID=cds.MS.gene073355.t1;Parent=MS.gene073355.t1 |
chr2.4 | exon | 54825440 | 54825576 | 54825440 | ID=MS.gene073355.t1.exon6;Parent=MS.gene073355.t1 |
chr2.4 | CDS | 54825440 | 54825576 | 54825440 | ID=cds.MS.gene073355.t1;Parent=MS.gene073355.t1 |
chr2.4 | exon | 54825170 | 54825317 | 54825170 | ID=MS.gene073355.t1.exon7;Parent=MS.gene073355.t1 |
chr2.4 | CDS | 54825170 | 54825317 | 54825170 | ID=cds.MS.gene073355.t1;Parent=MS.gene073355.t1 |
chr2.4 | exon | 54824770 | 54824901 | 54824770 | ID=MS.gene073355.t1.exon8;Parent=MS.gene073355.t1 |
chr2.4 | CDS | 54824770 | 54824901 | 54824770 | ID=cds.MS.gene073355.t1;Parent=MS.gene073355.t1 |
chr2.4 | exon | 54824314 | 54824442 | 54824314 | ID=MS.gene073355.t1.exon9;Parent=MS.gene073355.t1 |
chr2.4 | CDS | 54824314 | 54824442 | 54824314 | ID=cds.MS.gene073355.t1;Parent=MS.gene073355.t1 |
chr2.4 | exon | 54822755 | 54822897 | 54822755 | ID=MS.gene073355.t1.exon10;Parent=MS.gene073355.t1 |
chr2.4 | CDS | 54822755 | 54822897 | 54822755 | ID=cds.MS.gene073355.t1;Parent=MS.gene073355.t1 |
chr2.4 | exon | 54822519 | 54822683 | 54822519 | ID=MS.gene073355.t1.exon11;Parent=MS.gene073355.t1 |
chr2.4 | CDS | 54822519 | 54822683 | 54822519 | ID=cds.MS.gene073355.t1;Parent=MS.gene073355.t1 |
chr2.4 | exon | 54822260 | 54822385 | 54822260 | ID=MS.gene073355.t1.exon12;Parent=MS.gene073355.t1 |
chr2.4 | CDS | 54822260 | 54822385 | 54822260 | ID=cds.MS.gene073355.t1;Parent=MS.gene073355.t1 |
chr2.4 | exon | 54821919 | 54821992 | 54821919 | ID=MS.gene073355.t1.exon13;Parent=MS.gene073355.t1 |
chr2.4 | CDS | 54821919 | 54821992 | 54821919 | ID=cds.MS.gene073355.t1;Parent=MS.gene073355.t1 |
chr2.4 | exon | 54821492 | 54821741 | 54821492 | ID=MS.gene073355.t1.exon14;Parent=MS.gene073355.t1 |
chr2.4 | CDS | 54821492 | 54821741 | 54821492 | ID=cds.MS.gene073355.t1;Parent=MS.gene073355.t1 |
chr2.4 | exon | 54820371 | 54820550 | 54820371 | ID=MS.gene073355.t1.exon15;Parent=MS.gene073355.t1 |
chr2.4 | CDS | 54820371 | 54820550 | 54820371 | ID=cds.MS.gene073355.t1;Parent=MS.gene073355.t1 |
chr2.4 | exon | 54819724 | 54819972 | 54819724 | ID=MS.gene073355.t1.exon16;Parent=MS.gene073355.t1 |
chr2.4 | CDS | 54819724 | 54819972 | 54819724 | ID=cds.MS.gene073355.t1;Parent=MS.gene073355.t1 |
Gene Sequence |
Protein sequence |