AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene058323


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene058323.t1 MTR_2g032540 94.915 295 12 2 1 292 1 295 0.0 543
MS.gene058323.t1 MTR_1g108440 32.365 241 149 4 48 285 39 268 8.83e-30 114
MS.gene058323.t1 MTR_7g114900 29.682 283 175 9 6 285 19 280 2.26e-28 110
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene058323.t1 AT5G44520 57.971 276 107 2 1 275 1 268 6.21e-110 320
MS.gene058323.t1 AT5G44520 57.971 276 107 2 1 275 31 298 7.00e-110 321
MS.gene058323.t1 AT3G04790 30.104 289 179 8 3 285 5 276 7.66e-28 108
MS.gene058323.t1 AT2G01290 30.579 242 151 6 48 285 36 264 7.92e-25 100
MS.gene058323.t1 AT1G71100 30.453 243 157 5 48 286 32 266 1.51e-24 100

Find 82 sgRNAs with CRISPR-Local

Find 201 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAATTCACCAACTTCTTTAT+TGG 0.125915 2.2:-56313944 MS.gene058323:CDS
AATAATGAAGACTAGTTTAT+TGG 0.164453 2.2:+56311901 None:intergenic
GGGACATTTGTTGCTATAAT+TGG 0.176637 2.2:-56312082 MS.gene058323:CDS
ACTAGCCTTCTCTTGGATTA+TGG 0.191456 2.2:+56312033 None:intergenic
GGGCATCATTCTAACAAAAT+TGG 0.210497 2.2:+56313891 None:intergenic
GGTAATTTGAAAGACATAAT+AGG 0.241252 2.2:-56312723 MS.gene058323:CDS
GAGATTGACGATATGTTTCT+TGG 0.281572 2.2:-56311718 MS.gene058323:CDS
TTTATTGGCGTTATTCAGTA+TGG 0.286944 2.2:+56311916 None:intergenic
TCCAAATGGGTTGAACGTTT+TGG 0.288932 2.2:-56310288 MS.gene058323:CDS
TTGGGGTCTGGTCATGCTTC+TGG 0.291464 2.2:-56312783 MS.gene058323:CDS
TCCAAAACGTTCAACCCATT+TGG 0.340232 2.2:+56310287 None:intergenic
CTTACAGACTGAATTAAAAC+TGG 0.355408 2.2:+56311839 None:intergenic
GGTATGGCCATTCAGCATTT+AGG 0.364770 2.2:-56312762 MS.gene058323:CDS
GTAATTTGAAAGACATAATA+GGG 0.371319 2.2:-56312722 MS.gene058323:CDS
AATTTCCCTTGTAGCTCAAC+TGG 0.374098 2.2:-56311756 MS.gene058323:intron
AACTTACCAAGGCTTGGTAT+TGG 0.380544 2.2:+56311187 None:intergenic
AAAATCCTTGATAAAATTGA+TGG 0.403326 2.2:-56311082 MS.gene058323:CDS
CTTCTTTCCAATAAAGAAGT+TGG 0.407706 2.2:+56313937 None:intergenic
GTGAAAAGTGGCATGGTTGT+AGG 0.420807 2.2:-56312807 MS.gene058323:CDS
AGTGGCATGGTTGTAGGATT+GGG 0.431364 2.2:-56312801 MS.gene058323:CDS
GGCATCATTCTAACAAAATT+GGG 0.432006 2.2:+56313892 None:intergenic
TATAACAACTAGCCTTCTCT+TGG 0.436447 2.2:+56312026 None:intergenic
GTGGTAATTGCATCTCCAAA+TGG 0.437485 2.2:-56310302 MS.gene058323:CDS
AAGTGGCATGGTTGTAGGAT+TGG 0.446137 2.2:-56312802 MS.gene058323:CDS
TCAAATTACCATGACGAAGC+TGG 0.449566 2.2:+56312736 None:intergenic
GCTTCCATAGCTTCTTCTAC+AGG 0.450670 2.2:-56313976 MS.gene058323:CDS
CTTCCAGACCACCTTTGTAC+TGG 0.454820 2.2:+56311870 None:intergenic
TGTGGAGAAGACCAGCTATT+GGG 0.457431 2.2:-56311288 MS.gene058323:CDS
GCAAGTGAAGCAGCAAAGGC+TGG 0.460488 2.2:-56312464 MS.gene058323:CDS
GTCTGGTCATGCTTCTGGTA+TGG 0.462156 2.2:-56312778 MS.gene058323:CDS
AGCAAAGGCTGGGATTCCTT+TGG 0.462918 2.2:-56312453 MS.gene058323:CDS
ATGGTTGTAGGATTGGGGTC+TGG 0.471721 2.2:-56312795 MS.gene058323:CDS
AAGCCCTGTAGAAGAAGCTA+TGG 0.477415 2.2:+56313972 None:intergenic
GGACCTGCTTGCCCAATAGC+TGG 0.480422 2.2:+56311277 None:intergenic
CTTCCATAGCTTCTTCTACA+GGG 0.481289 2.2:-56313975 MS.gene058323:CDS
GACTGCAGATGTAGTGGGTT+AGG 0.487152 2.2:-56310258 None:intergenic
AAACCAGTACAAAGGTGGTC+TGG 0.488741 2.2:-56311873 MS.gene058323:CDS
TATTGGAAAGAAGAAGAAGA+AGG 0.488817 2.2:-56313927 MS.gene058323:CDS
GTGTGGAGAAGACCAGCTAT+TGG 0.489328 2.2:-56311289 MS.gene058323:CDS
TGGTAATTGCATCTCCAAAT+GGG 0.508882 2.2:-56310301 MS.gene058323:CDS
CAGTGTATTGAGCTGCTTGG+AGG 0.509994 2.2:+56313836 None:intergenic
AGACCAGCTATTGGGCAAGC+AGG 0.523384 2.2:-56311280 MS.gene058323:CDS
GATGCCGACGGTGTAGAAGA+AGG 0.526194 2.2:-56312103 MS.gene058323:CDS
GGTGACTTTCCACTGGTCAC+AGG 0.529692 2.2:-56311247 MS.gene058323:CDS
AGGCAGAACTTACCAAGGCT+TGG 0.536554 2.2:+56311181 None:intergenic
TCCCTTGTAGCTCAACTGGT+TGG 0.543438 2.2:-56311752 MS.gene058323:intron
TTTCCACTGGTCACAGGGGA+AGG 0.560023 2.2:-56311241 MS.gene058323:CDS
ACATCTCCAATACCAAGCCT+TGG 0.560116 2.2:-56311193 MS.gene058323:intron
CTGGCGACCTAAATGCTGAA+TGG 0.561942 2.2:+56312755 None:intergenic
AAGTGCAAGTGAAGCAGCAA+AGG 0.564860 2.2:-56312468 MS.gene058323:CDS
CAAGTGAAGCAGCAAAGGCT+GGG 0.565259 2.2:-56312463 MS.gene058323:CDS
ATTGGGCAAGCAGGTCCACT+AGG 0.571854 2.2:-56311271 MS.gene058323:CDS
CAAATTGACTGCAGATGTAG+TGG 0.573359 2.2:-56310264 MS.gene058323:CDS
GTGACTTTCCACTGGTCACA+GGG 0.576961 2.2:-56311246 MS.gene058323:CDS
CAGTACAAAGGTGGTCTGGA+AGG 0.578306 2.2:-56311869 MS.gene058323:CDS
TATGTTTCTTGGCGATGCTG+AGG 0.580030 2.2:-56311707 MS.gene058323:intron
ATGCCGACGGTGTAGAAGAA+GGG 0.581558 2.2:-56312102 MS.gene058323:CDS
TGCACACATGAGAACTGTCT+TGG 0.590935 2.2:+56312423 None:intergenic
TGTCCCTTCTTCTACACCGT+CGG 0.593219 2.2:+56312099 None:intergenic
GTGGACACATACGTGAAAAG+TGG 0.598925 2.2:-56312819 MS.gene058323:CDS
ATACAGTGTATTGAGCTGCT+TGG 0.600416 2.2:+56313833 None:intergenic
TTAGGTCGCCAGCTTCGTCA+TGG 0.602568 2.2:-56312744 MS.gene058323:CDS
ACTAGGAGGTGACTTTCCAC+TGG 0.606323 2.2:-56311254 MS.gene058323:CDS
GGAATCCATAATCCAAGAGA+AGG 0.609640 2.2:-56312038 MS.gene058323:intron
TGTCCTTCCCCTGTGACCAG+TGG 0.609659 2.2:+56311238 None:intergenic
CTGTCTTGGTAGGTATCCAA+AGG 0.609675 2.2:+56312437 None:intergenic
GTGGCATGGTTGTAGGATTG+GGG 0.627903 2.2:-56312800 MS.gene058323:CDS
GTCATCTAGACAAGAGCGAG+TGG 0.629293 2.2:+56313870 None:intergenic
ATTGAAGAAAACCAGTACAA+AGG 0.633072 2.2:-56311881 MS.gene058323:CDS
TTTGTAATGCAGATGTACAG+TGG 0.647555 2.2:-56310321 MS.gene058323:intron
CACATGAGAACTGTCTTGGT+AGG 0.650509 2.2:+56312427 None:intergenic
AGTGGAAAGTCACCTCCTAG+TGG 0.652713 2.2:+56311256 None:intergenic
GGGCAAGCAGGTCCACTAGG+AGG 0.661196 2.2:-56311268 MS.gene058323:CDS
GAAGAAAACCAGTACAAAGG+TGG 0.661605 2.2:-56311878 MS.gene058323:CDS
TCATCTAGACAAGAGCGAGT+GGG 0.663806 2.2:+56313871 None:intergenic
TTGTTGCTATAATTGGACGA+CGG 0.667250 2.2:-56312075 MS.gene058323:CDS
ACGACGGAAATTGCAAAGTG+AGG 0.672279 2.2:-56312059 MS.gene058323:CDS
ATTGCATTTGATGATGCCGA+CGG 0.678766 2.2:-56312115 MS.gene058323:CDS
ATTGATGGTGTTGCAGACCA+TGG 0.679648 2.2:-56311067 MS.gene058323:CDS
AAATTGACTGCAGATGTAGT+GGG 0.681003 2.2:-56310263 MS.gene058323:CDS
CACATACGTGAAAAGTGGCA+TGG 0.683635 2.2:-56312814 MS.gene058323:CDS
TGACTTTCCACTGGTCACAG+GGG 0.738162 2.2:-56311245 MS.gene058323:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAAAAAAGTAAATTTAAGTT+TGG - chr2.2:56312016-56312035 MS.gene058323:intron 10.0%
!! GGTTAATTACATTTAAATTA+TGG - chr2.2:56310920-56310939 MS.gene058323:intron 15.0%
!!! TTATTTTATGCTCTTTAAAT+AGG - chr2.2:56313233-56313252 MS.gene058323:intron 15.0%
!!! TTATTTTCATGAATTTATAG+TGG + chr2.2:56310879-56310898 None:intergenic 15.0%
!!! TTTTTTCAATTAAGATTGTA+GGG - chr2.2:56310782-56310801 MS.gene058323:intron 15.0%
!!! TTTTTTTCAATTAAGATTGT+AGG - chr2.2:56310781-56310800 MS.gene058323:intron 15.0%
!! AAAATCCTTGATAAAATTGA+TGG - chr2.2:56313156-56313175 MS.gene058323:intron 20.0%
!! AAATGATTAATGAACATATC+AGG + chr2.2:56311005-56311024 None:intergenic 20.0%
!! AAGAACTTCTTAACAAATTT+CGG + chr2.2:56313644-56313663 None:intergenic 20.0%
!! ACTCATTGAACAAAATAAAT+AGG + chr2.2:56313743-56313762 None:intergenic 20.0%
!! ATATCTTGATATGTAAAGTT+AGG - chr2.2:56312039-56312058 MS.gene058323:CDS 20.0%
!! GTAATTTGAAAGACATAATA+GGG - chr2.2:56311516-56311535 MS.gene058323:intron 20.0%
!! TAGATATAATTGTAATGAAC+AGG + chr2.2:56312907-56312926 None:intergenic 20.0%
!! TATATCAATTAAACTCAGAA+AGG + chr2.2:56311563-56311582 None:intergenic 20.0%
!! TGAGTTTAATTGATATACAT+TGG - chr2.2:56311566-56311585 MS.gene058323:intron 20.0%
!! TTTATCAACAAAATGTTTCT+TGG - chr2.2:56312629-56312648 MS.gene058323:intron 20.0%
!!! AATAATGAAGACTAGTTTAT+TGG + chr2.2:56312340-56312359 None:intergenic 20.0%
!!! AATCATTTTGTTAAGAAACA+GGG - chr2.2:56311176-56311195 MS.gene058323:intron 20.0%
!!! CTTTAATATTTTTGTCCTAA+AGG + chr2.2:56313398-56313417 None:intergenic 20.0%
!!! GATATTTTTTTTTTCCATAC+AGG - chr2.2:56311595-56311614 MS.gene058323:intron 20.0%
!!! TAATCATTTTGTTAAGAAAC+AGG - chr2.2:56311175-56311194 MS.gene058323:intron 20.0%
!!! TTATAAGTTAGCTTATAACT+TGG - chr2.2:56310645-56310664 MS.gene058323:intron 20.0%
!!! TTTAGATATGTGTTGTTATT+TGG - chr2.2:56311393-56311412 MS.gene058323:intron 20.0%
! AAGAAAAACTCAGAAAAAGA+GGG + chr2.2:56312570-56312589 None:intergenic 25.0%
! AAGAAATTGTTAGATCTGAT+TGG - chr2.2:56312602-56312621 MS.gene058323:intron 25.0%
! ACATCTGCATTACAAAATAA+TGG + chr2.2:56313913-56313932 None:intergenic 25.0%
! AGTGTAGATTCATTTGATAT+TGG - chr2.2:56312084-56312103 MS.gene058323:CDS 25.0%
! CAAGAAATACTCAACATTAA+AGG + chr2.2:56311866-56311885 None:intergenic 25.0%
! CATTCATCTTCCAATTAAAT+GGG + chr2.2:56311368-56311387 None:intergenic 25.0%
! GGTAATTTGAAAGACATAAT+AGG - chr2.2:56311515-56311534 MS.gene058323:intron 25.0%
! GTTCAAATAAGTGGTTAATT+AGG + chr2.2:56311039-56311058 None:intergenic 25.0%
! GTTCTACTAAATTATTGCAT+TGG - chr2.2:56313807-56313826 MS.gene058323:intron 25.0%
! TACAAACTACAATTACAAAG+AGG - chr2.2:56313675-56313694 MS.gene058323:intron 25.0%
! TATTTCTTAATTGATCCAAG+AGG - chr2.2:56312827-56312846 MS.gene058323:intron 25.0%
! TCAACTTACATAAAAACAAC+AGG + chr2.2:56313449-56313468 None:intergenic 25.0%
! TCATGTTTACTTATTATGCT+TGG - chr2.2:56311336-56311355 MS.gene058323:intron 25.0%
! TCATTCATCTTCCAATTAAA+TGG + chr2.2:56311369-56311388 None:intergenic 25.0%
!! AAAGTAGCAAATAGTTGATA+AGG - chr2.2:56310589-56310608 MS.gene058323:intron 25.0%
!! AAATCATTTTACACTGATAG+TGG + chr2.2:56312735-56312754 None:intergenic 25.0%
!! TTGTTTCTCTTTGTGTAATA+AGG - chr2.2:56312927-56312946 MS.gene058323:intron 25.0%
!! TTTTATGCTCTTTAAATAGG+TGG - chr2.2:56313236-56313255 MS.gene058323:intron 25.0%
!!! AGTTTTGATAAATGTTGCAA+AGG + chr2.2:56311226-56311245 None:intergenic 25.0%
!!! TGAGTATTTCTTGTTTTAGA+GGG - chr2.2:56311873-56311892 MS.gene058323:CDS 25.0%
!!! TTGAGTATTTCTTGTTTTAG+AGG - chr2.2:56311872-56311891 MS.gene058323:CDS 25.0%
AAACTTCTCATAATGCCTTT+AGG - chr2.2:56313380-56313399 MS.gene058323:intron 30.0%
AAGTTATCATCTGATCACAT+TGG - chr2.2:56312756-56312775 MS.gene058323:CDS 30.0%
AAGTTGAGAGAGAAAACTAA+CGG + chr2.2:56313213-56313232 None:intergenic 30.0%
ACAAATGCATCAATGTCAAA+TGG + chr2.2:56311733-56311752 None:intergenic 30.0%
ACCACATAAATTTGAGCTTA+TGG + chr2.2:56310903-56310922 None:intergenic 30.0%
ATCAACCACAAATTTGAACA+TGG + chr2.2:56310950-56310969 None:intergenic 30.0%
ATCAATTAAACTCAGAAAGG+AGG + chr2.2:56311560-56311579 None:intergenic 30.0%
ATGTTCAAATTTGTGGTTGA+TGG - chr2.2:56310949-56310968 MS.gene058323:intron 30.0%
ATTGAAGAAAACCAGTACAA+AGG - chr2.2:56312357-56312376 MS.gene058323:intron 30.0%
ATTGATGCATTTGTTTATGC+AGG - chr2.2:56311739-56311758 MS.gene058323:CDS 30.0%
CAAATTGAATTTGCAGTGTT+TGG - chr2.2:56310683-56310702 MS.gene058323:intron 30.0%
CAAGATGTTTAAAAGTGACT+AGG + chr2.2:56313788-56313807 None:intergenic 30.0%
CACTTGTAGAACAACAAAAA+GGG + chr2.2:56311273-56311292 None:intergenic 30.0%
CTCTATCAAAACATTTATCG+TGG + chr2.2:56311985-56312004 None:intergenic 30.0%
CTTACAGACTGAATTAAAAC+TGG + chr2.2:56312402-56312421 None:intergenic 30.0%
CTTCTTTCCAATAAAGAAGT+TGG + chr2.2:56310304-56310323 None:intergenic 30.0%
GAAGAAAAACTCAGAAAAAG+AGG + chr2.2:56312571-56312590 None:intergenic 30.0%
GAATTCACCAACTTCTTTAT+TGG - chr2.2:56310294-56310313 MS.gene058323:CDS 30.0%
GGCATCATTCTAACAAAATT+GGG + chr2.2:56310349-56310368 None:intergenic 30.0%
GTTAACCATGTTCAAATTTG+TGG - chr2.2:56310942-56310961 MS.gene058323:intron 30.0%
GTTAATGCAGTTCAAATAAG+TGG + chr2.2:56311048-56311067 None:intergenic 30.0%
TATTGGAAAGAAGAAGAAGA+AGG - chr2.2:56310311-56310330 MS.gene058323:CDS 30.0%
TCAATGAGTATAACATAAGC+CGG - chr2.2:56313754-56313773 MS.gene058323:intron 30.0%
TCACTTGTAGAACAACAAAA+AGG + chr2.2:56311274-56311293 None:intergenic 30.0%
TGTCTTCATGTAAGCTATTA+TGG + chr2.2:56310510-56310529 None:intergenic 30.0%
TTATGGAGAGCTTATGAATA+TGG + chr2.2:56310493-56310512 None:intergenic 30.0%
TTTATTGGCGTTATTCAGTA+TGG + chr2.2:56312325-56312344 None:intergenic 30.0%
! AAAATCGTCGGCATATTTTA+GGG - chr2.2:56311685-56311704 MS.gene058323:intron 30.0%
! AATTACAAAGAGGTGCAAAA+AGG - chr2.2:56313685-56313704 MS.gene058323:intron 30.0%
! ATTACAAAGAGGTGCAAAAA+GGG - chr2.2:56313686-56313705 MS.gene058323:intron 30.0%
! CAACACCATCAATTTTATCA+AGG + chr2.2:56313164-56313183 None:intergenic 30.0%
! TTATAACTTGGTAGCTGATA+AGG - chr2.2:56310657-56310676 MS.gene058323:intron 30.0%
! TTGGTGATTACCCATTTAAT+TGG - chr2.2:56311355-56311374 MS.gene058323:intron 30.0%
! TTGTTGTTCTACAAGTGAAT+GGG - chr2.2:56311276-56311295 MS.gene058323:CDS 30.0%
!! GATATGTGTTGTTATTTGGT+AGG - chr2.2:56311397-56311416 MS.gene058323:intron 30.0%
!! TTTGTTGTTCTACAAGTGAA+TGG - chr2.2:56311275-56311294 MS.gene058323:CDS 30.0%
AAATTGACTGCAGATGTAGT+GGG - chr2.2:56313975-56313994 MS.gene058323:CDS 35.0%
AGACTAGATAAGATGAGCAT+CGG - chr2.2:56313277-56313296 MS.gene058323:intron 35.0%
AGAGAATGCAGAAAAACAAG+AGG + chr2.2:56312865-56312884 None:intergenic 35.0%
AGTTGAGAGAGAAAACTAAC+GGG + chr2.2:56313212-56313231 None:intergenic 35.0%
ATCGTACAAAGTTGAATGAG+TGG + chr2.2:56312712-56312731 None:intergenic 35.0%
ATTGAGAAGCTATTCCAAAC+TGG - chr2.2:56313571-56313590 MS.gene058323:intron 35.0%
GAATAGTATACAAGGCTTTC+TGG + chr2.2:56311913-56311932 None:intergenic 35.0%
GAGAATGCAGAAAAACAAGA+GGG + chr2.2:56312864-56312883 None:intergenic 35.0%
GAGATTGACGATATGTTTCT+TGG - chr2.2:56312520-56312539 MS.gene058323:intron 35.0%
GCAAAAGAAACAAAGGAAAG+TGG - chr2.2:56313853-56313872 MS.gene058323:CDS 35.0%
GCCATAAGCTCAAATTTATG+TGG - chr2.2:56310899-56310918 MS.gene058323:intron 35.0%
GGGCATCATTCTAACAAAAT+TGG + chr2.2:56310350-56310369 None:intergenic 35.0%
GTAAGAGATTTCCTCTCTTT+AGG + chr2.2:56311950-56311969 None:intergenic 35.0%
GTGAAAAGTTTCCTAAAGAG+AGG - chr2.2:56311936-56311955 MS.gene058323:intron 35.0%
TAGAAAATTGACTGCCTGTA+TGG + chr2.2:56311612-56311631 None:intergenic 35.0%
TCTCTTTGTGTAATAAGGTG+TGG - chr2.2:56312932-56312951 MS.gene058323:intron 35.0%
TGATCAGACAATCTTAGTTG+TGG - chr2.2:56310560-56310579 MS.gene058323:intron 35.0%
TGCATCAATGTCAAATGGAT+TGG + chr2.2:56311728-56311747 None:intergenic 35.0%
TGGTAATTGCATCTCCAAAT+GGG - chr2.2:56313937-56313956 MS.gene058323:CDS 35.0%
TTCACCAGGAATAGTATACA+AGG + chr2.2:56311921-56311940 None:intergenic 35.0%
TTCACCATGTAGAAAATCGT+CGG - chr2.2:56311673-56311692 MS.gene058323:intron 35.0%
TTCATCAAAGAATAGCACGA+AGG + chr2.2:56311202-56311221 None:intergenic 35.0%
TTGAGAAGCTATTCCAAACT+GGG - chr2.2:56313572-56313591 MS.gene058323:intron 35.0%
TTGTTGCTATAATTGGACGA+CGG - chr2.2:56312163-56312182 MS.gene058323:intron 35.0%
TTTGTAATGCAGATGTACAG+TGG - chr2.2:56313917-56313936 MS.gene058323:CDS 35.0%
! AAAGCCTTGTATACTATTCC+TGG - chr2.2:56311914-56311933 MS.gene058323:CDS 35.0%
! GAAAATCGTCGGCATATTTT+AGG - chr2.2:56311684-56311703 MS.gene058323:intron 35.0%
! GGGACATTTGTTGCTATAAT+TGG - chr2.2:56312156-56312175 MS.gene058323:intron 35.0%
! GTTGATAAGGTAGCTTACAA+CGG - chr2.2:56310602-56310621 MS.gene058323:intron 35.0%
!! ATCAATGTCAAATGGATTGG+TGG + chr2.2:56311725-56311744 None:intergenic 35.0%
!! ATGTGTTGTTATTTGGTAGG+TGG - chr2.2:56311400-56311419 MS.gene058323:intron 35.0%
!! CCTTTGTTTCTTTTGCTTCT+GGG + chr2.2:56313849-56313868 None:intergenic 35.0%
!! TATAACAACTAGCCTTCTCT+TGG + chr2.2:56312215-56312234 None:intergenic 35.0%
!! TCCTTTGTTTCTTTTGCTTC+TGG + chr2.2:56313850-56313869 None:intergenic 35.0%
!! TCTTTAGGAAACTTTTCACC+AGG + chr2.2:56311935-56311954 None:intergenic 35.0%
!!! TTCTTGTTTTAGAGGGTACT+TGG - chr2.2:56311880-56311899 MS.gene058323:CDS 35.0%
AAACAACAGGAGAAAAAGCG+GGG + chr2.2:56312297-56312316 None:intergenic 40.0%
AAGTGACTAGGATGTTGATC+CGG + chr2.2:56313776-56313795 None:intergenic 40.0%
AATTTCCCTTGTAGCTCAAC+TGG - chr2.2:56312482-56312501 MS.gene058323:intron 40.0%
AGGGACATTAGAAAACCTCT+TGG + chr2.2:56312845-56312864 None:intergenic 40.0%
ATACAGTGTATTGAGCTGCT+TGG + chr2.2:56310408-56310427 None:intergenic 40.0%
ATACGCAACATCTCAATTGC+AGG + chr2.2:56313080-56313099 None:intergenic 40.0%
ATGGCATAAGCTGTTTGAAC+TGG + chr2.2:56310474-56310493 None:intergenic 40.0%
CAAACAACAGGAGAAAAAGC+GGG + chr2.2:56312298-56312317 None:intergenic 40.0%
CAAATTGACTGCAGATGTAG+TGG - chr2.2:56313974-56313993 MS.gene058323:CDS 40.0%
CCCAGAAGCAAAAGAAACAA+AGG - chr2.2:56313846-56313865 MS.gene058323:CDS 40.0%
CTTCCATAGCTTCTTCTACA+GGG - chr2.2:56310263-56310282 MS.gene058323:CDS 40.0%
GAAGAAAACCAGTACAAAGG+TGG - chr2.2:56312360-56312379 MS.gene058323:intron 40.0%
GCAAACAACAGGAGAAAAAG+CGG + chr2.2:56312299-56312318 None:intergenic 40.0%
GCAGTGTTTGGTAGAATTAG+CGG - chr2.2:56310695-56310714 MS.gene058323:intron 40.0%
GGAATCCATAATCCAAGAGA+AGG - chr2.2:56312200-56312219 MS.gene058323:intron 40.0%
GTGGTAATTGCATCTCCAAA+TGG - chr2.2:56313936-56313955 MS.gene058323:CDS 40.0%
GTTGAGAGAGAAAACTAACG+GGG + chr2.2:56313211-56313230 None:intergenic 40.0%
TCAAATTACCATGACGAAGC+TGG + chr2.2:56311505-56311524 None:intergenic 40.0%
TCCAAAACGTTCAACCCATT+TGG + chr2.2:56313954-56313973 None:intergenic 40.0%
TTCATCAGTAAGACCCAGTT+TGG + chr2.2:56313588-56313607 None:intergenic 40.0%
TTTGCATGATTTCACGAGTG+AGG - chr2.2:56313609-56313628 MS.gene058323:intron 40.0%
! AACTTACCAAGGCTTGGTAT+TGG + chr2.2:56313054-56313073 None:intergenic 40.0%
! CAGGCAGTCAATTTTCTACA+TGG - chr2.2:56311614-56311633 MS.gene058323:intron 40.0%
! TATGCCGACGATTTTCTACA+TGG + chr2.2:56311680-56311699 None:intergenic 40.0%
!! ACTAGCCTTCTCTTGGATTA+TGG + chr2.2:56312208-56312227 None:intergenic 40.0%
!! ATTGCATTTGATGATGCCGA+CGG - chr2.2:56312123-56312142 MS.gene058323:CDS 40.0%
!!! TCCAAATGGGTTGAACGTTT+TGG - chr2.2:56313950-56313969 MS.gene058323:CDS 40.0%
AAACCAGTACAAAGGTGGTC+TGG - chr2.2:56312365-56312384 MS.gene058323:intron 45.0%
AAGCCCTGTAGAAGAAGCTA+TGG + chr2.2:56310269-56310288 None:intergenic 45.0%
AAGTGCAAGTGAAGCAGCAA+AGG - chr2.2:56311770-56311789 MS.gene058323:intron 45.0%
AAGTGGCATGGTTGTAGGAT+TGG - chr2.2:56311436-56311455 MS.gene058323:intron 45.0%
ACATCTCCAATACCAAGCCT+TGG - chr2.2:56313045-56313064 MS.gene058323:intron 45.0%
ACGACGGAAATTGCAAAGTG+AGG - chr2.2:56312179-56312198 MS.gene058323:intron 45.0%
AGTGGCATGGTTGTAGGATT+GGG - chr2.2:56311437-56311456 MS.gene058323:intron 45.0%
ATTGCAGGCAGAACTTACCA+AGG + chr2.2:56313065-56313084 None:intergenic 45.0%
CACATACGTGAAAAGTGGCA+TGG - chr2.2:56311424-56311443 MS.gene058323:intron 45.0%
CACATGAGAACTGTCTTGGT+AGG + chr2.2:56311814-56311833 None:intergenic 45.0%
CTGTCTTGGTAGGTATCCAA+AGG + chr2.2:56311804-56311823 None:intergenic 45.0%
GCTTCCATAGCTTCTTCTAC+AGG - chr2.2:56310262-56310281 MS.gene058323:CDS 45.0%
GGTATGGCCATTCAGCATTT+AGG - chr2.2:56311476-56311495 MS.gene058323:intron 45.0%
GTGAAAAGTGGCATGGTTGT+AGG - chr2.2:56311431-56311450 MS.gene058323:intron 45.0%
GTGGACACATACGTGAAAAG+TGG - chr2.2:56311419-56311438 MS.gene058323:intron 45.0%
TATGTTTCTTGGCGATGCTG+AGG - chr2.2:56312531-56312550 MS.gene058323:intron 45.0%
TCATCTAGACAAGAGCGAGT+GGG + chr2.2:56310370-56310389 None:intergenic 45.0%
TGCACACATGAGAACTGTCT+TGG + chr2.2:56311818-56311837 None:intergenic 45.0%
TGTGGAGAAGACCAGCTATT+GGG - chr2.2:56312950-56312969 MS.gene058323:intron 45.0%
! AGTATACAAGGCTTTCTGGC+AGG + chr2.2:56311909-56311928 None:intergenic 45.0%
! CAGTATGGACTGCAAACAAC+AGG + chr2.2:56312310-56312329 None:intergenic 45.0%
! GGGTTTTCGATATGACACCA+TGG + chr2.2:56313191-56313210 None:intergenic 45.0%
!! ATTGATGGTGTTGCAGACCA+TGG - chr2.2:56313171-56313190 MS.gene058323:intron 45.0%
!! GGTTGATGGAGTTACGTTGT+TGG - chr2.2:56310963-56310982 MS.gene058323:intron 45.0%
AAAGGAGGAAGAGCTCACGT+GGG + chr2.2:56311545-56311564 None:intergenic 50.0%
ACTAGGAGGTGACTTTCCAC+TGG - chr2.2:56312984-56313003 MS.gene058323:intron 50.0%
AGCAAAGGCTGGGATTCCTT+TGG - chr2.2:56311785-56311804 MS.gene058323:intron 50.0%
AGGCAGAACTTACCAAGGCT+TGG + chr2.2:56313060-56313079 None:intergenic 50.0%
AGTGGAAAGTCACCTCCTAG+TGG + chr2.2:56312985-56313004 None:intergenic 50.0%
ATGCCGACGGTGTAGAAGAA+GGG - chr2.2:56312136-56312155 MS.gene058323:intron 50.0%
ATGGTTGTAGGATTGGGGTC+TGG - chr2.2:56311443-56311462 MS.gene058323:intron 50.0%
CAAGTGAAGCAGCAAAGGCT+GGG - chr2.2:56311775-56311794 MS.gene058323:intron 50.0%
CAGTACAAAGGTGGTCTGGA+AGG - chr2.2:56312369-56312388 MS.gene058323:intron 50.0%
CAGTGTATTGAGCTGCTTGG+AGG + chr2.2:56310405-56310424 None:intergenic 50.0%
CTGGCGACCTAAATGCTGAA+TGG + chr2.2:56311486-56311505 None:intergenic 50.0%
CTTCCAGACCACCTTTGTAC+TGG + chr2.2:56312371-56312390 None:intergenic 50.0%
GCCAACCAGTTGAGCTACAA+GGG + chr2.2:56312490-56312509 None:intergenic 50.0%
GTCATCTAGACAAGAGCGAG+TGG + chr2.2:56310371-56310390 None:intergenic 50.0%
GTCTGGTCATGCTTCTGGTA+TGG - chr2.2:56311460-56311479 MS.gene058323:intron 50.0%
GTGACTTTCCACTGGTCACA+GGG - chr2.2:56312992-56313011 MS.gene058323:intron 50.0%
GTGGCATGGTTGTAGGATTG+GGG - chr2.2:56311438-56311457 MS.gene058323:intron 50.0%
GTGTGGAGAAGACCAGCTAT+TGG - chr2.2:56312949-56312968 MS.gene058323:intron 50.0%
TCCCTTGTAGCTCAACTGGT+TGG - chr2.2:56312486-56312505 MS.gene058323:intron 50.0%
TGACTTTCCACTGGTCACAG+GGG - chr2.2:56312993-56313012 MS.gene058323:intron 50.0%
TGCCAACCAGTTGAGCTACA+AGG + chr2.2:56312491-56312510 None:intergenic 50.0%
TGTCCCTTCTTCTACACCGT+CGG + chr2.2:56312142-56312161 None:intergenic 50.0%
AGACCAGCTATTGGGCAAGC+AGG - chr2.2:56312958-56312977 MS.gene058323:intron 55.0%
ATTGGGCAAGCAGGTCCACT+AGG - chr2.2:56312967-56312986 MS.gene058323:intron 55.0%
GAAAGGAGGAAGAGCTCACG+TGG + chr2.2:56311546-56311565 None:intergenic 55.0%
GATGCCGACGGTGTAGAAGA+AGG - chr2.2:56312135-56312154 MS.gene058323:intron 55.0%
GCAAGTGAAGCAGCAAAGGC+TGG - chr2.2:56311774-56311793 MS.gene058323:intron 55.0%
GGTGACTTTCCACTGGTCAC+AGG - chr2.2:56312991-56313010 MS.gene058323:intron 55.0%
TTAGGTCGCCAGCTTCGTCA+TGG - chr2.2:56311494-56311513 MS.gene058323:intron 55.0%
TTGGGGTCTGGTCATGCTTC+TGG - chr2.2:56311455-56311474 MS.gene058323:intron 55.0%
TTTCCACTGGTCACAGGGGA+AGG - chr2.2:56312997-56313016 MS.gene058323:intron 55.0%
GGACCTGCTTGCCCAATAGC+TGG + chr2.2:56312964-56312983 None:intergenic 60.0%
TGTCCTTCCCCTGTGACCAG+TGG + chr2.2:56313003-56313022 None:intergenic 60.0%
GGGCAAGCAGGTCCACTAGG+AGG - chr2.2:56312970-56312989 MS.gene058323:intron 65.0%


Chromosome Type Strat End Strand Name
chr2.2 gene 56310259 56314001 56310259 ID=MS.gene058323
chr2.2 mRNA 56310259 56314001 56310259 ID=MS.gene058323.t1;Parent=MS.gene058323
chr2.2 exon 56313837 56314001 56313837 ID=MS.gene058323.t1.exon1;Parent=MS.gene058323.t1
chr2.2 CDS 56313837 56314001 56313837 ID=cds.MS.gene058323.t1;Parent=MS.gene058323.t1
chr2.2 exon 56312714 56312841 56312714 ID=MS.gene058323.t1.exon2;Parent=MS.gene058323.t1
chr2.2 CDS 56312714 56312841 56312714 ID=cds.MS.gene058323.t1;Parent=MS.gene058323.t1
chr2.2 exon 56312430 56312499 56312430 ID=MS.gene058323.t1.exon3;Parent=MS.gene058323.t1
chr2.2 CDS 56312430 56312499 56312430 ID=cds.MS.gene058323.t1;Parent=MS.gene058323.t1
chr2.2 exon 56312039 56312143 56312039 ID=MS.gene058323.t1.exon4;Parent=MS.gene058323.t1
chr2.2 CDS 56312039 56312143 56312039 ID=cds.MS.gene058323.t1;Parent=MS.gene058323.t1
chr2.2 exon 56311844 56311939 56311844 ID=MS.gene058323.t1.exon5;Parent=MS.gene058323.t1
chr2.2 CDS 56311844 56311939 56311844 ID=cds.MS.gene058323.t1;Parent=MS.gene058323.t1
chr2.2 exon 56311708 56311764 56311708 ID=MS.gene058323.t1.exon6;Parent=MS.gene058323.t1
chr2.2 CDS 56311708 56311764 56311708 ID=cds.MS.gene058323.t1;Parent=MS.gene058323.t1
chr2.2 exon 56311194 56311311 56311194 ID=MS.gene058323.t1.exon7;Parent=MS.gene058323.t1
chr2.2 CDS 56311194 56311311 56311194 ID=cds.MS.gene058323.t1;Parent=MS.gene058323.t1
chr2.2 exon 56311049 56311115 56311049 ID=MS.gene058323.t1.exon8;Parent=MS.gene058323.t1
chr2.2 CDS 56311049 56311115 56311049 ID=cds.MS.gene058323.t1;Parent=MS.gene058323.t1
chr2.2 exon 56310259 56310331 56310259 ID=MS.gene058323.t1.exon9;Parent=MS.gene058323.t1
chr2.2 CDS 56310259 56310331 56310259 ID=cds.MS.gene058323.t1;Parent=MS.gene058323.t1
Gene Sequence

>MS.gene058323

ATGGCTTCCATAGCTTCTTCTACAGGGCTTCTTCTGAATTCACCAACTTCTTTATTGGAAAGAAGAAGAAGAAGGAAAAGAATCAGTCCCAATTTTGTTAGAATGATGCCCACTCGCTCTTGTCTAGATGACACTTCTTCTCTCCTCCAAGCAGCTCAATACACTGTATGTCACTCTATCAACTTTAAATTCATTATCAATATGTCGCATTTCCAGTTCAAACAGCTTATGCCATATTCATAAGCTCTCCATAATAGCTTACATGAAGACAATAATTTAATTTAATTCTTAGTTGTGTTATTGATCAGACAATCTTAGTTGTGGTAAAAAAAAGTAGCAAATAGTTGATAAGGTAGCTTACAACGGATGAGTTTATAGTAGATAACTTATAAGTTAGCTTATAACTTGGTAGCTGATAAGGTAACAAATTGAATTTGCAGTGTTTGGTAGAATTAGCGGTTAAATTAACTTATAAATATGAAATGACATAAAAAAAAAATCGTGTATTTAATTAATATTAATTTTTTTTCAATTAAGATTGTAGGGTTAAAATTGAGATAAAAAGTGATAAGCTGTGTGTTTTAAGCTATAAACTACTTGAATTAGCTTATCGAAAACCACTATAAATTCATGAAAATAAGCCATAAGCTCAAATTTATGTGGTTAATTACATTTAAATTATGGTTAACCATGTTCAAATTTGTGGTTGATGGAGTTACGTTGTTGGTTAATGAATTTCAACACCTGATATGTTCATTAATCATTTATTGATTTGATCCTAATTAACCACTTATTTGAACTGCATTAACGACATCTTTTCGCAAAACATTTGAATTTTCGTCAGACTAATTTTGATTATACAAAAATCATTTCTCTTATTTTTTGTTATAGAAATAGTTTATAAGCACTTATTTGATAATCATTTTGTTAAGAAACAGGGCCTTCGTGCTATTCTTTGATGAAACCTTTGCAACATTTATCAAAACTGTATCTTTGTATTGTTTTCAATAACCCTTTTTGTTGTTCTACAAGTGAATGGGTTGACAAAATAATGAAAACTGTGTGTTTTTGACAAAATCATGTTTACTTATTATGCTTGGTGATTACCCATTTAATTGGAAGATGAATGAATTTTTTAGATATGTGTTGTTATTTGGTAGGTGGACACATACGTGAAAAGTGGCATGGTTGTAGGATTGGGGTCTGGTCATGCTTCTGGTATGGCCATTCAGCATTTAGGTCGCCAGCTTCGTCATGGTAATTTGAAAGACATAATAGGGATTCCCACGTGAGCTCTTCCTCCTTTCTGAGTTTAATTGATATACATTGGCAACATGATATTTTTTTTTTCCATACAGGCAGTCAATTTTCTACATGGTGAATTGTGATTATATACATATATATCGAATCACAATTCACCATGTAGAAAATCGTCGGCATATTTTAGGGAAGTAATGTAAGTTCCACCAATCCATTTGACATTGATGCATTTGTTTATGCAGGTCTGTTGCAAGTGCAAGTGAAGCAGCAAAGGCTGGGATTCCTTTGGATACCTACCAAGACAGTTCTCATGTGTGCACAAAAACAATCATATTCTAGATTTTCCTTTAATGTTGAGTATTTCTTGTTTTAGAGGGTACTTGGATGCCTGCCAGAAAGCCTTGTATACTATTCCTGGTGAAAAGTTTCCTAAAGAGAGGAAATCTCTTACATAAATGCATAACCACGATAAATGTTTTGATAGAGTCAAATTGAAGTAAAAAAGTAAATTTAAGTTTGGATATCTTGATATGTAAAGTTAGGTGTGTTTTAACTTTTATTTTCTAGTGTAGATTCATTTGATATTGGTCTGTTGTAGATTGATATTGCATTTGATGATGCCGACGGTGTAGAAGAAGGGACATTTGTTGCTATAATTGGACGACGGAAATTGCAAAGTGAGGAATCCATAATCCAAGAGAAGGCTAGTTGTTATACATTGTTCTTCTGAATTTTCTTGTGATATCAACTTTTGTGTTTTAATGATGATTGATTTCCCCGCTTTTTCTCCTGTTGTTTGCAGTCCATACTGAATAACGCCAATAAACTAGTCTTCATTATTGAAGAAAACCAGTACAAAGGTGGTCTGGAAGGTTCTATTCCAGTTTTAATTCAGTCTGTAAGCAGCTGTGCTAATTGTTAGCTTATTGATTCTTTCTTCTGTATGTTTGTCTTTAATATCAAAATTTCCCTTGTAGCTCAACTGGTTGGCAACTGCTGAAGAGATTGACGATATGTTTCTTGGCGATGCTGAGGTTCGCTATACATTCCCTCTTTTTCTGAGTTTTTCTTCATGTGTATAATAAGAAATTGTTAGATCTGATTGGTTGTTTTATCAACAAAATGTTTCTTGGTGATGCTGATTTTTTCTTCTGTATGTTTCTTGATCAATTGTATCTTTTCTTGTTTTACCACTCATTCAACTTTGTACGATCCACTATCAGTGTAAAATGATTTCAAGTTATCATCTGATCACATTGGAGATCTCATTGATGCGATGCTCTTTTTGTTTGTTTTAGTAGCTTATTTTATTTCTTAATTGATCCAAGAGGTTTTCTAATGTCCCTCTTGTTTTTCTGCATTCTCTTAACTGTTTTACTAAAATACCTGTTCATTACAATTATATCTATTGTTTCTCTTTGTGTAATAAGGTGTGGAGAAGACCAGCTATTGGGCAAGCAGGTCCACTAGGAGGTGACTTTCCACTGGTCACAGGGGAAGGACATAATGTTCTTGATGTTATCTTCACATCTCCAATACCAAGCCTTGGTAAGTTCTGCCTGCAATTGAGATGTTGCGTATTTGAGTCTCTGCTGATCAATGTCATTGACTTTGTATTACTTGCAGCTGAAGTAGCGAAAATCCTTGATAAAATTGATGGTGTTGCAGACCATGGTGTCATATCGAAAACCCCGTTAGTTTTCTCTCTCAACTTTTATTTTATGCTCTTTAAATAGGTGGTTGACAATCACACTCATTAGACTAGATAAGATGAGCATCGGTTCAAAAGATCTGATACAGCTTCGAGTCTCTGATGTACTACGTGATATGATTGATAGAATGATTTAAAATTAGTTTGAATAAACTTCTCATAATGCCTTTAGGACAAAAATATTAAAGAATCTTGCATTGACGAGTTTTTTAAACGCCTGTTGTTTTTATGTAAGTTGAAATTAGCGTCTGCGTCTCAATGTTTTCAAAAGATTTCTCAAACTTCTTCATAGCAAATATATGAGAATATTTTTGTAAGTGAAGAATTATTAACTTATTTTCATTGAGAAGCTATTCCAAACTGGGTCTTACTGATGAACTTTGCATGATTTCACGAGTGAGGTAATATTATCCGAAATTTGTTAAGAAGTTCTTATAGAAATATATACAAACTACAATTACAAAGAGGTGCAAAAAGGGTACGATTAGTATAAGTCTGATGTATGTGCAACCTATTTATTTTGTTCAATGAGTATAACATAAGCCGGATCAACATCCTAGTCACTTTTAAACATCTTGTTCTACTAAATTATTGCATTGGTTCTATTAATATTCTTCCCAGAAGCAAAAGAAACAAAGGAAAGTGGTTTATATGACAATATTAACTTATTTTATTTGCGTCCATTATTTTGTAATGCAGATGTACAGTGGTAATTGCATCTCCAAATGGGTTGAACGTTTTGGACAAATTGACTGCAGATGTAGTGGGTTAG

Protein sequence

>MS.gene058323.t1

MASIASSTGLLLNSPTSLLERRRRRKRISPNFVRMMPTRSCLDDTSSLLQAAQYTVDTYVKSGMVVGLGSGHASGMAIQHLGRQLRHGNLKDIIGIPTSVASASEAAKAGIPLDTYQDSSHIDIAFDDADGVEEGTFVAIIGRRKLQSEESIIQEKSILNNANKLVFIIEENQYKGGLEGSIPVLIQSLNWLATAEEIDDMFLGDAEVWRRPAIGQAGPLGGDFPLVTGEGHNVLDVIFTSPIPSLAEVAKILDKIDGVADHGVISKTPCTVVIASPNGLNVLDKLTADVVG