Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene073760.t1 | XP_013468212.1 | 92 | 289 | 22 | 1 | 65 | 352 | 62 | 350 | 5.20E-141 | 510.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene073760.t1 | Q9S752 | 70.5 | 251 | 65 | 4 | 99 | 344 | 123 | 369 | 1.5e-96 | 354.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene073760.t1 | A0A072VJM2 | 92.0 | 289 | 22 | 1 | 65 | 352 | 62 | 350 | 3.7e-141 | 510.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene059051 | MS.gene073760 | 0.800381 | 1.48E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene073760.t1 | MTR_1g064680 | 94.334 | 353 | 16 | 2 | 1 | 352 | 1 | 350 | 0.0 | 591 |
| MS.gene073760.t1 | MTR_7g101150 | 66.575 | 365 | 90 | 6 | 1 | 347 | 1 | 351 | 3.37e-157 | 445 |
| MS.gene073760.t1 | MTR_7g101150 | 61.644 | 365 | 84 | 7 | 1 | 347 | 1 | 327 | 3.81e-136 | 390 |
| MS.gene073760.t1 | MTR_2g022210 | 49.807 | 259 | 122 | 4 | 93 | 344 | 124 | 381 | 6.45e-89 | 272 |
| MS.gene073760.t1 | MTR_4g117250 | 44.482 | 299 | 157 | 6 | 52 | 345 | 60 | 354 | 1.82e-84 | 260 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene073760.t1 | AT3G09770 | 70.980 | 255 | 63 | 5 | 96 | 344 | 120 | 369 | 5.62e-123 | 359 |
| MS.gene073760.t1 | AT3G53410 | 52.870 | 331 | 108 | 9 | 18 | 344 | 7 | 293 | 8.91e-109 | 320 |
| MS.gene073760.t1 | AT5G03200 | 55.063 | 316 | 113 | 8 | 41 | 342 | 33 | 333 | 7.97e-108 | 319 |
| MS.gene073760.t1 | AT3G09770 | 67.411 | 224 | 62 | 5 | 96 | 313 | 120 | 338 | 5.26e-98 | 294 |
| MS.gene073760.t1 | AT5G19080 | 47.244 | 254 | 122 | 3 | 96 | 344 | 125 | 371 | 1.84e-78 | 245 |
| MS.gene073760.t1 | AT3G06140 | 47.244 | 254 | 123 | 4 | 99 | 349 | 112 | 357 | 3.78e-78 | 244 |
Find 104 sgRNAs with CRISPR-Local
Find 211 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACGTTTGATGCTACTGTTTC+TGG | 0.165501 | 1.1:+48960295 | MS.gene073760:CDS |
| TGCTGGAAATTTATAGTAAC+TGG | 0.271287 | 1.1:-48961783 | None:intergenic |
| TGCTGACACCTCCAAGATAT+TGG | 0.275619 | 1.1:-48960139 | None:intergenic |
| CAGCTGGCTGTCTAAACTTC+TGG | 0.307730 | 1.1:-48961815 | None:intergenic |
| CACTATCTTCTTCACTCTTC+AGG | 0.317637 | 1.1:-48963187 | None:intergenic |
| TATATTATCATGGGTAATAT+AGG | 0.334544 | 1.1:+48959881 | None:intergenic |
| TAAAGGAGAATTCCGGTTAA+AGG | 0.352674 | 1.1:+48962025 | MS.gene073760:CDS |
| ACAACCAGTAGAAAGGCTTT+TGG | 0.367841 | 1.1:+48963138 | MS.gene073760:CDS |
| AACTGTTCCTATGCCTTTGC+CGG | 0.369591 | 1.1:+48960081 | MS.gene073760:CDS |
| ACTTCTGGCCAAGACCTTGC+TGG | 0.379461 | 1.1:-48961800 | None:intergenic |
| GCATCCGGTGGCGGCGGTGG+CGG | 0.380871 | 1.1:-48959980 | None:intergenic |
| TCAAATGAAACGCCAACATC+TGG | 0.387967 | 1.1:+48961951 | MS.gene073760:CDS |
| GGCGGTGGCGGAGGAGTTAC+CGG | 0.391281 | 1.1:-48959968 | None:intergenic |
| CACTCTTCAGGCTCAGGCTC+AGG | 0.391727 | 1.1:-48963175 | None:intergenic |
| ATAAATTTCCAGCAAGGTCT+TGG | 0.391916 | 1.1:+48961792 | MS.gene073760:CDS |
| TCAGCAACAGGCGCCGGCGC+CGG | 0.395045 | 1.1:+48960156 | MS.gene073760:CDS |
| AGAAGGATAAAGGAGAATTC+CGG | 0.402168 | 1.1:+48962018 | MS.gene073760:CDS |
| TATGAGCTGCAGGAGATATA+TGG | 0.402714 | 1.1:+48962083 | MS.gene073760:CDS |
| TCCGGTGGCGGCGGTGGCGG+AGG | 0.403742 | 1.1:-48959977 | None:intergenic |
| GCAGCATCCGGTGGCGGCGG+TGG | 0.412591 | 1.1:-48959983 | None:intergenic |
| ATCTTGGAGGTGTCAGCAAC+AGG | 0.416141 | 1.1:+48960144 | MS.gene073760:CDS |
| GGCGGCGGAGGATAGTAATT+AGG | 0.416420 | 1.1:-48960055 | None:intergenic |
| GAACCTGATGAGGAAAATCC+TGG | 0.417660 | 1.1:+48960253 | MS.gene073760:CDS |
| GCAGTGTTTGAGAAGGATAA+AGG | 0.421719 | 1.1:+48962008 | MS.gene073760:CDS |
| TCTGCTTAGCTACCTTTAAC+CGG | 0.430591 | 1.1:-48962037 | None:intergenic |
| CTTCTTCACTCTTCAGGCTC+AGG | 0.431420 | 1.1:-48963181 | None:intergenic |
| GCTGACACCTCCAAGATATT+GGG | 0.436037 | 1.1:-48960138 | None:intergenic |
| TCCTCCGCCACCGCCGCCAC+CGG | 0.438435 | 1.1:+48959976 | MS.gene073760:CDS |
| TCTACTGGTTGTCTGCAGAT+TGG | 0.441982 | 1.1:-48963127 | None:intergenic |
| GCCGGCGCCGGCGCCGTATG+TGG | 0.447246 | 1.1:+48960168 | MS.gene073760:CDS |
| GGAAAATACCATGTGGCGAC+AGG | 0.449920 | 1.1:-48962201 | None:intergenic |
| TCCACATACGGCGCCGGCGC+CGG | 0.450762 | 1.1:-48960169 | None:intergenic |
| TTTAGACAGCCAGCTGGAAC+TGG | 0.454606 | 1.1:+48961822 | MS.gene073760:CDS |
| AGACACGGTGGCGGTGGAAG+TGG | 0.456233 | 1.1:+48959929 | MS.gene073760:CDS |
| ATCTCCAAAAGCCTTTCTAC+TGG | 0.456468 | 1.1:-48963142 | None:intergenic |
| CGTCGGAGACACGGTGGCGG+TGG | 0.459369 | 1.1:+48959923 | MS.gene073760:CDS |
| GCATCTGCTTTAACTGCTAC+AGG | 0.460079 | 1.1:-48961906 | None:intergenic |
| CTGCAGGAGATATATGGTAT+TGG | 0.477865 | 1.1:+48962089 | MS.gene073760:CDS |
| TAATTACTATCCTCCGCCGC+CGG | 0.484178 | 1.1:+48960057 | MS.gene073760:CDS |
| AGGCGATTGACCCAATATCT+TGG | 0.484883 | 1.1:+48960128 | MS.gene073760:CDS |
| AAGCAGATATTGTGGGTGAA+TGG | 0.486141 | 1.1:+48962053 | MS.gene073760:CDS |
| AAAGGCATAGGAACAGTTCC+CGG | 0.486589 | 1.1:-48960076 | None:intergenic |
| CCGCCGCCACCGGATGCTGC+TGG | 0.494202 | 1.1:+48959986 | MS.gene073760:CDS |
| TGATACGGAGGAGCAGCAGC+AGG | 0.496030 | 1.1:-48960025 | None:intergenic |
| CCAGCAGCATCCGGTGGCGG+CGG | 0.497527 | 1.1:-48959986 | None:intergenic |
| TTACCAGCAGCATCCGGTGG+CGG | 0.526284 | 1.1:-48959989 | None:intergenic |
| GGTAGCTAAGCAGATATTGT+GGG | 0.526889 | 1.1:+48962046 | MS.gene073760:CDS |
| TGGAATGAGGTATGAGCTGC+AGG | 0.532509 | 1.1:+48962073 | MS.gene073760:CDS |
| CAGCAGCAGGGTAAACGAAT+CGG | 0.533425 | 1.1:-48960012 | None:intergenic |
| GTATGATCACCATCATCGTC+AGG | 0.534340 | 1.1:+48960108 | MS.gene073760:CDS |
| GGAATCTGAGTTATTGAAAG+TGG | 0.534885 | 1.1:+48961866 | MS.gene073760:CDS |
| ATAGGAACAGTTCCCGGCGG+CGG | 0.535468 | 1.1:-48960070 | None:intergenic |
| TCTGCAGACAACCAGTAGAA+AGG | 0.542846 | 1.1:+48963131 | MS.gene073760:CDS |
| TGATCATACGGCGCCGGCAA+AGG | 0.551424 | 1.1:-48960094 | None:intergenic |
| AGGTAGCTAAGCAGATATTG+TGG | 0.552818 | 1.1:+48962045 | MS.gene073760:CDS |
| AATCGGTTACCAGCAGCATC+CGG | 0.554933 | 1.1:-48959995 | None:intergenic |
| GGAACAGTTCCCGGCGGCGG+AGG | 0.555005 | 1.1:-48960067 | None:intergenic |
| CAGTTGAGAGTGACTTGGAT+GGG | 0.558719 | 1.1:+48962117 | MS.gene073760:CDS |
| AATTACTATCCTCCGCCGCC+GGG | 0.559380 | 1.1:+48960058 | MS.gene073760:CDS |
| TACGGCGCCGGCAAAGGCAT+AGG | 0.564235 | 1.1:-48960088 | None:intergenic |
| TGATGCTCCACATACGGCGC+CGG | 0.566075 | 1.1:-48960175 | None:intergenic |
| TAATTAGGATAATTCTGATA+CGG | 0.568187 | 1.1:-48960040 | None:intergenic |
| GTTATTGAAAGTGGCCGACA+TGG | 0.568973 | 1.1:+48961875 | MS.gene073760:CDS |
| GCATCTTCAAGCGACGTGGA+CGG | 0.576209 | 1.1:+48961927 | MS.gene073760:CDS |
| TTCTTTGCAAAAGAAGGCGA+CGG | 0.577706 | 1.1:+48961723 | MS.gene073760:CDS |
| AACTTCAGTTGAGAGTGACT+TGG | 0.579503 | 1.1:+48962112 | MS.gene073760:CDS |
| TCTAACAATCGTCGGAGACA+CGG | 0.580257 | 1.1:+48959914 | MS.gene073760:CDS |
| GAGGTGTCAGCAACAGGCGC+CGG | 0.580449 | 1.1:+48960150 | MS.gene073760:CDS |
| GACTTCTGATGCTCCACATA+CGG | 0.580948 | 1.1:-48960181 | None:intergenic |
| CGATTGACCCAATATCTTGG+AGG | 0.584212 | 1.1:+48960131 | MS.gene073760:CDS |
| TGTCCTTCCCTGTCGCCACA+TGG | 0.586258 | 1.1:+48962193 | MS.gene073760:CDS |
| GGTCAATCGCCTGACGATGA+TGG | 0.590554 | 1.1:-48960117 | None:intergenic |
| TCAGTTGAGAGTGACTTGGA+TGG | 0.593199 | 1.1:+48962116 | MS.gene073760:CDS |
| GAATGATGTAAATATCAAGA+AGG | 0.594223 | 1.1:+48960216 | MS.gene073760:CDS |
| TGATGGTGATCATACGGCGC+CGG | 0.599260 | 1.1:-48960100 | None:intergenic |
| AACCTGATGAGGAAAATCCT+GGG | 0.603264 | 1.1:+48960254 | MS.gene073760:CDS |
| GTTACTATAAATTTCCAGCA+AGG | 0.603855 | 1.1:+48961786 | MS.gene073760:CDS |
| TGACGATGATGGTGATCATA+CGG | 0.604221 | 1.1:-48960106 | None:intergenic |
| GACTTGGATGGGAATGACCC+TGG | 0.605458 | 1.1:+48962128 | MS.gene073760:CDS |
| AAATTGATACCAGTTCCAGC+TGG | 0.607603 | 1.1:-48961831 | None:intergenic |
| AACTCAAGCAGTGTTTGAGA+AGG | 0.610246 | 1.1:+48962001 | MS.gene073760:CDS |
| TTAGGATAATTCTGATACGG+AGG | 0.616665 | 1.1:-48960037 | None:intergenic |
| TTGATGCTACTGTTTCTGGA+AGG | 0.616868 | 1.1:+48960299 | MS.gene073760:CDS |
| CAGAAGTTTAGACAGCCAGC+TGG | 0.627481 | 1.1:+48961816 | MS.gene073760:CDS |
| TGGCCGACGAGTTCATCCTC+CGG | 0.629583 | 1.1:+48959949 | MS.gene073760:CDS |
| GAAAATACCATGTGGCGACA+GGG | 0.631207 | 1.1:-48962200 | None:intergenic |
| ATACCATGTGGCGACAGGGA+AGG | 0.638468 | 1.1:-48962196 | None:intergenic |
| CGGTTACCAGCAGCATCCGG+TGG | 0.647735 | 1.1:-48959992 | None:intergenic |
| TTGTTGCAGTGCATGTGTAG+CGG | 0.649496 | 1.1:+48963067 | MS.gene073760:intron |
| CTGCGTCCTTACGTCAACAA+AGG | 0.660443 | 1.1:+48961746 | MS.gene073760:CDS |
| ATGGGTAATATAGGAAGTAG+CGG | 0.661139 | 1.1:+48959890 | MS.gene073760:CDS |
| GTAGCGGTTCTAACAATCGT+CGG | 0.661392 | 1.1:+48959906 | MS.gene073760:CDS |
| ACTGATGATTGAACCTGATG+AGG | 0.661841 | 1.1:+48960243 | MS.gene073760:CDS |
| TATTGTGGGTGAATGGAATG+AGG | 0.662749 | 1.1:+48962060 | MS.gene073760:CDS |
| AATCGTCGGAGACACGGTGG+CGG | 0.675225 | 1.1:+48959920 | MS.gene073760:CDS |
| GATACGGAGGAGCAGCAGCA+GGG | 0.676843 | 1.1:-48960024 | None:intergenic |
| GGAAGGACAGTTGTGTCGCG+AGG | 0.677114 | 1.1:-48962179 | None:intergenic |
| TACAGGATAGATGTCCATGT+CGG | 0.677204 | 1.1:-48961889 | None:intergenic |
| AGATGCATCTTCAAGCGACG+TGG | 0.677563 | 1.1:+48961923 | MS.gene073760:CDS |
| GTATGTGGAGCATCAGAAGT+CGG | 0.687630 | 1.1:+48960183 | MS.gene073760:CDS |
| TTACCGGAGGATGAACTCGT+CGG | 0.696899 | 1.1:-48959952 | None:intergenic |
| GGTGGCGGAGGAGTTACCGG+AGG | 0.719189 | 1.1:-48959965 | None:intergenic |
| AACAATCGTCGGAGACACGG+TGG | 0.726822 | 1.1:+48959917 | MS.gene073760:CDS |
| GGCATAGGAACAGTTCCCGG+CGG | 0.758019 | 1.1:-48960073 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAATAAAATAAAATAAAA+AGG | - | chr1.1:48961130-48961149 | None:intergenic | 0.0% |
| !! | AAAGAAAAATTAAATTACAA+AGG | - | chr1.1:48962232-48962251 | None:intergenic | 10.0% |
| !! | AAGAAAAATTAAATTACAAA+GGG | - | chr1.1:48962231-48962250 | None:intergenic | 10.0% |
| !!! | TTAAATTCTTTTACTTTTTA+GGG | + | chr1.1:48961275-48961294 | MS.gene073760:intron | 10.0% |
| !!! | TTTAAATTCTTTTACTTTTT+AGG | + | chr1.1:48961274-48961293 | MS.gene073760:intron | 10.0% |
| !! | TTGATAAACAACTTAATTAA+AGG | - | chr1.1:48962827-48962846 | None:intergenic | 15.0% |
| !!! | ATTACTTAATTTATTTTGCA+TGG | + | chr1.1:48961307-48961326 | MS.gene073760:intron | 15.0% |
| !!! | ATTTTTCTTTTATAGATTGT+TGG | + | chr1.1:48962242-48962261 | MS.gene073760:intron | 15.0% |
| !!! | TAAATTCTTTTACTTTTTAG+GGG | + | chr1.1:48961276-48961295 | MS.gene073760:intron | 15.0% |
| !!! | TCTGTTTGTTAAATATATTT+TGG | + | chr1.1:48961156-48961175 | MS.gene073760:intron | 15.0% |
| !!! | TTAAGCTAAATTTGATTTTT+TGG | + | chr1.1:48960731-48960750 | MS.gene073760:intron | 15.0% |
| !!! | TTTATTTCATATTTTGTTGT+AGG | - | chr1.1:48962554-48962573 | None:intergenic | 15.0% |
| !! | AATTAAATTACAAAGGGAAA+CGG | - | chr1.1:48962225-48962244 | None:intergenic | 20.0% |
| !! | TAATTAGGATAATTCTGATA+CGG | - | chr1.1:48960043-48960062 | None:intergenic | 20.0% |
| !! | TATATGATAGAACATTATAG+CGG | + | chr1.1:48960514-48960533 | MS.gene073760:intron | 20.0% |
| !! | TTGGATTCAAATAAGTAAAT+GGG | + | chr1.1:48960750-48960769 | MS.gene073760:intron | 20.0% |
| !! | TTGGTTAACTATTTACTTAT+AGG | + | chr1.1:48960846-48960865 | MS.gene073760:intron | 20.0% |
| !! | TTTGGATTCAAATAAGTAAA+TGG | + | chr1.1:48960749-48960768 | MS.gene073760:intron | 20.0% |
| !!! | AAATTCTTTTACTTTTTAGG+GGG | + | chr1.1:48961277-48961296 | MS.gene073760:intron | 20.0% |
| !!! | ATTAAGTTGTTTATCAAAAC+AGG | + | chr1.1:48962830-48962849 | MS.gene073760:intron | 20.0% |
| !!! | GAAATAAAGTCAAATTGTTT+TGG | + | chr1.1:48962566-48962585 | MS.gene073760:intron | 20.0% |
| !!! | TATCAATTTTTCAATGTTTG+AGG | + | chr1.1:48961845-48961864 | MS.gene073760:CDS | 20.0% |
| !!! | TTAAGTTGTTTATCAAAACA+GGG | + | chr1.1:48962831-48962850 | MS.gene073760:intron | 20.0% |
| !!! | TTAATTATTTTAGCTAGCTT+AGG | + | chr1.1:48960871-48960890 | MS.gene073760:intron | 20.0% |
| ! | AAACTATTCTACAATTGCAA+TGG | - | chr1.1:48960828-48960847 | None:intergenic | 25.0% |
| ! | ATAAAACAACTATAGCACAA+TGG | - | chr1.1:48961648-48961667 | None:intergenic | 25.0% |
| ! | ATGAAAACAACTTATAGCTT+AGG | - | chr1.1:48962857-48962876 | None:intergenic | 25.0% |
| ! | ATTGCAATTGTAGAATAGTT+TGG | + | chr1.1:48960827-48960846 | MS.gene073760:intron | 25.0% |
| ! | GAATGATGTAAATATCAAGA+AGG | + | chr1.1:48960216-48960235 | MS.gene073760:CDS | 25.0% |
| ! | TGTTAAATGATATCCATGTT+TGG | + | chr1.1:48962333-48962352 | MS.gene073760:intron | 25.0% |
| ! | TTTCAATCATTGACGAAATT+TGG | - | chr1.1:48962364-48962383 | None:intergenic | 25.0% |
| !! | TCTAAAATGAACTTGCATTA+AGG | - | chr1.1:48961588-48961607 | None:intergenic | 25.0% |
| !! | TTCTTTTGCAAAGAAAAGTA+CGG | - | chr1.1:48961718-48961737 | None:intergenic | 25.0% |
| !!! | AAAGTCAAATTGTTTTGGAT+TGG | + | chr1.1:48962571-48962590 | MS.gene073760:intron | 25.0% |
| !!! | TTTGTTTTATTTCCAGATGT+TGG | - | chr1.1:48961966-48961985 | None:intergenic | 25.0% |
| AAAAGCTTATAAACATGCCA+TGG | - | chr1.1:48962663-48962682 | None:intergenic | 30.0% | |
| AAACACTTGTGAAACTGTTT+GGG | + | chr1.1:48962619-48962638 | MS.gene073760:intron | 30.0% | |
| AAAGCTATTTATGTCCTGTT+TGG | + | chr1.1:48962479-48962498 | MS.gene073760:intron | 30.0% | |
| AAAGCTTATAAACATGCCAT+GGG | - | chr1.1:48962662-48962681 | None:intergenic | 30.0% | |
| AAGACTCTAATGACTAATGA+AGG | - | chr1.1:48963020-48963039 | None:intergenic | 30.0% | |
| AATGCAAAATAGTCAAACTC+TGG | + | chr1.1:48961459-48961478 | MS.gene073760:intron | 30.0% | |
| ACTAGTAATGCTAAATCACT+GGG | + | chr1.1:48962307-48962326 | MS.gene073760:intron | 30.0% | |
| ATGTTGCATCATTTGATTAG+AGG | + | chr1.1:48960473-48960492 | MS.gene073760:intron | 30.0% | |
| GAACAATCAGCTATTACATT+TGG | - | chr1.1:48961346-48961365 | None:intergenic | 30.0% | |
| GATGCTGTTATGAAGATAAA+GGG | - | chr1.1:48961694-48961713 | None:intergenic | 30.0% | |
| GTAATTATGTGACTTATGCA+TGG | + | chr1.1:48960620-48960639 | MS.gene073760:intron | 30.0% | |
| GTATACGTTCATGTGAAAAT+GGG | + | chr1.1:48960428-48960447 | MS.gene073760:intron | 30.0% | |
| GTTACTATAAATTTCCAGCA+AGG | + | chr1.1:48961786-48961805 | MS.gene073760:CDS | 30.0% | |
| TACTAGTAATGCTAAATCAC+TGG | + | chr1.1:48962306-48962325 | MS.gene073760:intron | 30.0% | |
| TGATGCTGTTATGAAGATAA+AGG | - | chr1.1:48961695-48961714 | None:intergenic | 30.0% | |
| TGCTGGAAATTTATAGTAAC+TGG | - | chr1.1:48961786-48961805 | None:intergenic | 30.0% | |
| TGTATACGTTCATGTGAAAA+TGG | + | chr1.1:48960427-48960446 | MS.gene073760:intron | 30.0% | |
| ! | AAGTCCAAAAGTGTGAAAAA+CGG | - | chr1.1:48961368-48961387 | None:intergenic | 30.0% |
| ! | ATCGGTGACAAAATAACTTT+TGG | - | chr1.1:48962414-48962433 | None:intergenic | 30.0% |
| ! | GTACTTTTCTTTGCAAAAGA+AGG | + | chr1.1:48961717-48961736 | MS.gene073760:CDS | 30.0% |
| ! | GTATTATCTATGTGTTGCTA+GGG | + | chr1.1:48960979-48960998 | MS.gene073760:intron | 30.0% |
| ! | TATTTTCCTTTGTTGACGTA+AGG | - | chr1.1:48961755-48961774 | None:intergenic | 30.0% |
| ! | TCGGTGACAAAATAACTTTT+GGG | - | chr1.1:48962413-48962432 | None:intergenic | 30.0% |
| ! | TGGGTTGAACAATAAATTTG+TGG | + | chr1.1:48960447-48960466 | MS.gene073760:intron | 30.0% |
| ! | TGTATTATCTATGTGTTGCT+AGG | + | chr1.1:48960978-48960997 | MS.gene073760:intron | 30.0% |
| ! | TTGTATTGATGACTTTCCTT+AGG | + | chr1.1:48961499-48961518 | MS.gene073760:intron | 30.0% |
| ! | TTGTTTTCCTTTGACGATAT+CGG | + | chr1.1:48961003-48961022 | MS.gene073760:intron | 30.0% |
| !! | AGTTGTTTTCATAAGCTATC+TGG | - | chr1.1:48962708-48962727 | None:intergenic | 30.0% |
| !! | TTATTTTGCATGGAGTGTTA+TGG | + | chr1.1:48961317-48961336 | MS.gene073760:intron | 30.0% |
| AAACACTCTCAATAACCTCA+AGG | - | chr1.1:48961246-48961265 | None:intergenic | 35.0% | |
| AACACTCTCAATAACCTCAA+GGG | - | chr1.1:48961245-48961264 | None:intergenic | 35.0% | |
| AACGTAACAAGAAAAAACCC+AGG | - | chr1.1:48960274-48960293 | None:intergenic | 35.0% | |
| AGAAGGATAAAGGAGAATTC+CGG | + | chr1.1:48962018-48962037 | MS.gene073760:CDS | 35.0% | |
| AGACTATTTGGGAGAGTTTA+TGG | - | chr1.1:48962946-48962965 | None:intergenic | 35.0% | |
| AGCATAAGCACTTGTCATAT+AGG | - | chr1.1:48962799-48962818 | None:intergenic | 35.0% | |
| ATAAATTTCCAGCAAGGTCT+TGG | + | chr1.1:48961792-48961811 | MS.gene073760:CDS | 35.0% | |
| ATCAGTTAGCTGAGATTGAT+CGG | - | chr1.1:48962432-48962451 | None:intergenic | 35.0% | |
| ATGGGTAATATAGGAAGTAG+CGG | + | chr1.1:48959890-48959909 | MS.gene073760:CDS | 35.0% | |
| CAAACACTTGTGAAACTGTT+TGG | + | chr1.1:48962618-48962637 | MS.gene073760:intron | 35.0% | |
| GGAATCTGAGTTATTGAAAG+TGG | + | chr1.1:48961866-48961885 | MS.gene073760:CDS | 35.0% | |
| TAAAACACCTAGTTCCTTAG+AGG | + | chr1.1:48961560-48961579 | MS.gene073760:intron | 35.0% | |
| TAAAGGAGAATTCCGGTTAA+AGG | + | chr1.1:48962025-48962044 | MS.gene073760:CDS | 35.0% | |
| TAGCACTTACGAGACTATTT+GGG | - | chr1.1:48962957-48962976 | None:intergenic | 35.0% | |
| TCTCAAAATAGATTCCAGCT+TGG | - | chr1.1:48961216-48961235 | None:intergenic | 35.0% | |
| TGACTAATGAAGGACATGTT+TGG | - | chr1.1:48963010-48963029 | None:intergenic | 35.0% | |
| TTAGCACTTACGAGACTATT+TGG | - | chr1.1:48962958-48962977 | None:intergenic | 35.0% | |
| TTAGGAAGCTGATATGACAA+AGG | + | chr1.1:48960889-48960908 | MS.gene073760:intron | 35.0% | |
| TTAGGATAATTCTGATACGG+AGG | - | chr1.1:48960040-48960059 | None:intergenic | 35.0% | |
| ! | AAACTGTTTGGGATAGCTTA+TGG | + | chr1.1:48962630-48962649 | MS.gene073760:intron | 35.0% |
| ! | AGATAACACACTCTTTTCCA+GGG | - | chr1.1:48962148-48962167 | None:intergenic | 35.0% |
| ! | ATGTGACTTATGCATGGTTT+TGG | + | chr1.1:48960626-48960645 | MS.gene073760:intron | 35.0% |
| ! | ATTGATGACTTTCCTTAGGA+AGG | + | chr1.1:48961503-48961522 | MS.gene073760:intron | 35.0% |
| ! | GTTTTTCACACTTTTGGACT+TGG | + | chr1.1:48961367-48961386 | MS.gene073760:intron | 35.0% |
| ! | TGATTAGAGGTACAATGAGT+TGG | + | chr1.1:48960486-48960505 | MS.gene073760:intron | 35.0% |
| ! | TGTTTTCCTTTGACGATATC+GGG | + | chr1.1:48961004-48961023 | MS.gene073760:intron | 35.0% |
| !! | TGTTCCGTTTTTCACACTTT+TGG | + | chr1.1:48961361-48961380 | MS.gene073760:intron | 35.0% |
| AAAATGTGCATGCCTTCCTA+AGG | - | chr1.1:48961518-48961537 | None:intergenic | 40.0% | |
| AAATTGATACCAGTTCCAGC+TGG | - | chr1.1:48961834-48961853 | None:intergenic | 40.0% | |
| AACCTGATGAGGAAAATCCT+GGG | + | chr1.1:48960254-48960273 | MS.gene073760:CDS | 40.0% | |
| AACTCAAGCAGTGTTTGAGA+AGG | + | chr1.1:48962001-48962020 | MS.gene073760:CDS | 40.0% | |
| AACTTCAGTTGAGAGTGACT+TGG | + | chr1.1:48962112-48962131 | MS.gene073760:CDS | 40.0% | |
| AAGCAGATATTGTGGGTGAA+TGG | + | chr1.1:48962053-48962072 | MS.gene073760:CDS | 40.0% | |
| ACATGCACTGCAACAAAGAA+AGG | - | chr1.1:48963063-48963082 | None:intergenic | 40.0% | |
| ACGTTTGATGCTACTGTTTC+TGG | + | chr1.1:48960295-48960314 | MS.gene073760:CDS | 40.0% | |
| ACTAAGCTGCTTATCCAAAC+AGG | - | chr1.1:48962496-48962515 | None:intergenic | 40.0% | |
| ACTGATGATTGAACCTGATG+AGG | + | chr1.1:48960243-48960262 | MS.gene073760:CDS | 40.0% | |
| AGGTAGCTAAGCAGATATTG+TGG | + | chr1.1:48962045-48962064 | MS.gene073760:CDS | 40.0% | |
| ATCTCCAAAAGCCTTTCTAC+TGG | - | chr1.1:48963145-48963164 | None:intergenic | 40.0% | |
| CTGCAGGAGATATATGGTAT+TGG | + | chr1.1:48962089-48962108 | MS.gene073760:CDS | 40.0% | |
| GCAGTGTTTGAGAAGGATAA+AGG | + | chr1.1:48962008-48962027 | MS.gene073760:CDS | 40.0% | |
| GGTAGCTAAGCAGATATTGT+GGG | + | chr1.1:48962046-48962065 | MS.gene073760:CDS | 40.0% | |
| TACAGGATAGATGTCCATGT+CGG | - | chr1.1:48961892-48961911 | None:intergenic | 40.0% | |
| TAGAGAATGTAACACCAAGC+TGG | + | chr1.1:48961199-48961218 | MS.gene073760:intron | 40.0% | |
| TAGCTTATGGAAATAGCCCA+TGG | + | chr1.1:48962643-48962662 | MS.gene073760:intron | 40.0% | |
| TATGAGCTGCAGGAGATATA+TGG | + | chr1.1:48962083-48962102 | MS.gene073760:CDS | 40.0% | |
| TATTGTGGGTGAATGGAATG+AGG | + | chr1.1:48962060-48962079 | MS.gene073760:CDS | 40.0% | |
| TCAAATGAAACGCCAACATC+TGG | + | chr1.1:48961951-48961970 | MS.gene073760:CDS | 40.0% | |
| TCTGCTTAGCTACCTTTAAC+CGG | - | chr1.1:48962040-48962059 | None:intergenic | 40.0% | |
| TGCATCGTGTGAAATGTGAA+TGG | + | chr1.1:48960598-48960617 | MS.gene073760:intron | 40.0% | |
| TTCTTTGCAAAAGAAGGCGA+CGG | + | chr1.1:48961723-48961742 | MS.gene073760:CDS | 40.0% | |
| ! | ACAACCAGTAGAAAGGCTTT+TGG | + | chr1.1:48963138-48963157 | MS.gene073760:CDS | 40.0% |
| ! | AGAGGTACAATGAGTTGGAT+AGG | + | chr1.1:48960491-48960510 | MS.gene073760:intron | 40.0% |
| ! | CAGATAACACACTCTTTTCC+AGG | - | chr1.1:48962149-48962168 | None:intergenic | 40.0% |
| ! | TGACGATGATGGTGATCATA+CGG | - | chr1.1:48960109-48960128 | None:intergenic | 40.0% |
| !! | AGGCTTTTGGAGATCAAAGT+TGG | + | chr1.1:48963151-48963170 | MS.gene073760:CDS | 40.0% |
| !! | GGCTTTTGGAGATCAAAGTT+GGG | + | chr1.1:48963152-48963171 | MS.gene073760:CDS | 40.0% |
| !! | GGTTTTGGTGAGATTGTTGT+TGG | + | chr1.1:48960641-48960660 | MS.gene073760:intron | 40.0% |
| !! | TTAGGAAGGCATGCACATTT+TGG | + | chr1.1:48961517-48961536 | MS.gene073760:intron | 40.0% |
| !! | TTGATGCTACTGTTTCTGGA+AGG | + | chr1.1:48960299-48960318 | MS.gene073760:CDS | 40.0% |
| !! | TTTTGAGAGAATGTCCCTTG+AGG | + | chr1.1:48961228-48961247 | MS.gene073760:intron | 40.0% |
| !!! | TTTTGGTGCTTCTTACCTCA+AGG | + | chr1.1:48961534-48961553 | MS.gene073760:intron | 40.0% |
| AAATTTGGCAGCGCCAAACA+TGG | - | chr1.1:48962349-48962368 | None:intergenic | 45.0% | |
| AACTGTTCCTATGCCTTTGC+CGG | + | chr1.1:48960081-48960100 | MS.gene073760:CDS | 45.0% | |
| ACTAAGTGAGGTCAGCTACA+TGG | - | chr1.1:48960548-48960567 | None:intergenic | 45.0% | |
| AGGCGATTGACCCAATATCT+TGG | + | chr1.1:48960128-48960147 | MS.gene073760:CDS | 45.0% | |
| ATGTAGCTGACCTCACTTAG+TGG | + | chr1.1:48960547-48960566 | MS.gene073760:intron | 45.0% | |
| CGATTGACCCAATATCTTGG+AGG | + | chr1.1:48960131-48960150 | MS.gene073760:CDS | 45.0% | |
| GAAAATACCATGTGGCGACA+GGG | - | chr1.1:48962203-48962222 | None:intergenic | 45.0% | |
| GAACCTGATGAGGAAAATCC+TGG | + | chr1.1:48960253-48960272 | MS.gene073760:CDS | 45.0% | |
| GACTTCTGATGCTCCACATA+CGG | - | chr1.1:48960184-48960203 | None:intergenic | 45.0% | |
| GCATCTGCTTTAACTGCTAC+AGG | - | chr1.1:48961909-48961928 | None:intergenic | 45.0% | |
| GCTGACACCTCCAAGATATT+GGG | - | chr1.1:48960141-48960160 | None:intergenic | 45.0% | |
| GGGAAACGGAAAATACCATG+TGG | - | chr1.1:48962211-48962230 | None:intergenic | 45.0% | |
| GTATGATCACCATCATCGTC+AGG | + | chr1.1:48960108-48960127 | MS.gene073760:CDS | 45.0% | |
| GTTATTGAAAGTGGCCGACA+TGG | + | chr1.1:48961875-48961894 | MS.gene073760:CDS | 45.0% | |
| TCTAACAATCGTCGGAGACA+CGG | + | chr1.1:48959914-48959933 | MS.gene073760:CDS | 45.0% | |
| TCTGCAGACAACCAGTAGAA+AGG | + | chr1.1:48963131-48963150 | MS.gene073760:CDS | 45.0% | |
| TGACCTCACTTAGTGGGATA+AGG | + | chr1.1:48960554-48960573 | MS.gene073760:intron | 45.0% | |
| TGCTGACACCTCCAAGATAT+TGG | - | chr1.1:48960142-48960161 | None:intergenic | 45.0% | |
| TGTAGCTGACCTCACTTAGT+GGG | + | chr1.1:48960548-48960567 | MS.gene073760:intron | 45.0% | |
| TTGTTGCAGTGCATGTGTAG+CGG | + | chr1.1:48963067-48963086 | MS.gene073760:intron | 45.0% | |
| ! | AAAGGCATAGGAACAGTTCC+CGG | - | chr1.1:48960079-48960098 | None:intergenic | 45.0% |
| ! | AACCCAGGATTTTCCTCATC+AGG | - | chr1.1:48960259-48960278 | None:intergenic | 45.0% |
| ! | AAGCCTTATCCCACTAAGTG+AGG | - | chr1.1:48960560-48960579 | None:intergenic | 45.0% |
| ! | AGGCTTGAGTGTTGTTATCG+TGG | + | chr1.1:48960574-48960593 | MS.gene073760:intron | 45.0% |
| ! | CAGTTGAGAGTGACTTGGAT+GGG | + | chr1.1:48962117-48962136 | MS.gene073760:CDS | 45.0% |
| ! | CTTGCATTAAGGCACCTCTA+AGG | - | chr1.1:48961577-48961596 | None:intergenic | 45.0% |
| ! | GTAGCGGTTCTAACAATCGT+CGG | + | chr1.1:48959906-48959925 | MS.gene073760:CDS | 45.0% |
| ! | GTATGTGGAGCATCAGAAGT+CGG | + | chr1.1:48960183-48960202 | MS.gene073760:CDS | 45.0% |
| ! | TAAGGCACCTCTAAGGAACT+AGG | - | chr1.1:48961570-48961589 | None:intergenic | 45.0% |
| ! | TCAGTTGAGAGTGACTTGGA+TGG | + | chr1.1:48962116-48962135 | MS.gene073760:CDS | 45.0% |
| ! | TCTACTGGTTGTCTGCAGAT+TGG | - | chr1.1:48963130-48963149 | None:intergenic | 45.0% |
| !!! | CTAGGTGTTTTAACGCCTTG+AGG | - | chr1.1:48961552-48961571 | None:intergenic | 45.0% |
| !!! | TATTAATATTTTGAATATTA+TGG | + | chr1.1:48961419-48961438 | MS.gene073760:intron | 5.0% |
| AATCGGTTACCAGCAGCATC+CGG | - | chr1.1:48959998-48960017 | None:intergenic | 50.0% | |
| AGATGCATCTTCAAGCGACG+TGG | + | chr1.1:48961923-48961942 | MS.gene073760:CDS | 50.0% | |
| CAAGCTCCCGATATCGTCAA+AGG | - | chr1.1:48961013-48961032 | None:intergenic | 50.0% | |
| CAGAAGTTTAGACAGCCAGC+TGG | + | chr1.1:48961816-48961835 | MS.gene073760:CDS | 50.0% | |
| CAGCAGCAGGGTAAACGAAT+CGG | - | chr1.1:48960015-48960034 | None:intergenic | 50.0% | |
| CAGCTGGCTGTCTAAACTTC+TGG | - | chr1.1:48961818-48961837 | None:intergenic | 50.0% | |
| CTGCGTCCTTACGTCAACAA+AGG | + | chr1.1:48961746-48961765 | MS.gene073760:CDS | 50.0% | |
| GGAAAATACCATGTGGCGAC+AGG | - | chr1.1:48962204-48962223 | None:intergenic | 50.0% | |
| TAATTACTATCCTCCGCCGC+CGG | + | chr1.1:48960057-48960076 | MS.gene073760:CDS | 50.0% | |
| TGGAATGAGGTATGAGCTGC+AGG | + | chr1.1:48962073-48962092 | MS.gene073760:CDS | 50.0% | |
| TTACCGGAGGATGAACTCGT+CGG | - | chr1.1:48959955-48959974 | None:intergenic | 50.0% | |
| TTTAGACAGCCAGCTGGAAC+TGG | + | chr1.1:48961822-48961841 | MS.gene073760:CDS | 50.0% | |
| ! | GCGGATGTGCGAACGTTTTA+AGG | + | chr1.1:48963086-48963105 | MS.gene073760:CDS | 50.0% |
| !! | ATCTTGGAGGTGTCAGCAAC+AGG | + | chr1.1:48960144-48960163 | MS.gene073760:CDS | 50.0% |
| AACAATCGTCGGAGACACGG+TGG | + | chr1.1:48959917-48959936 | MS.gene073760:CDS | 55.0% | |
| AATTACTATCCTCCGCCGCC+GGG | + | chr1.1:48960058-48960077 | MS.gene073760:CDS | 55.0% | |
| ACTTCTGGCCAAGACCTTGC+TGG | - | chr1.1:48961803-48961822 | None:intergenic | 55.0% | |
| ATACCATGTGGCGACAGGGA+AGG | - | chr1.1:48962199-48962218 | None:intergenic | 55.0% | |
| GACTTGGATGGGAATGACCC+TGG | + | chr1.1:48962128-48962147 | MS.gene073760:CDS | 55.0% | |
| GCATCTTCAAGCGACGTGGA+CGG | + | chr1.1:48961927-48961946 | MS.gene073760:CDS | 55.0% | |
| GGCGGCGGAGGATAGTAATT+AGG | - | chr1.1:48960058-48960077 | None:intergenic | 55.0% | |
| GGTCAATCGCCTGACGATGA+TGG | - | chr1.1:48960120-48960139 | None:intergenic | 55.0% | |
| ! | TGATGGTGATCATACGGCGC+CGG | - | chr1.1:48960103-48960122 | None:intergenic | 55.0% |
| AATCGTCGGAGACACGGTGG+CGG | + | chr1.1:48959920-48959939 | MS.gene073760:CDS | 60.0% | |
| ATAGGAACAGTTCCCGGCGG+CGG | - | chr1.1:48960073-48960092 | None:intergenic | 60.0% | |
| CACTCTTCAGGCTCAGGCTC+AGG | - | chr1.1:48963178-48963197 | None:intergenic | 60.0% | |
| GATACGGAGGAGCAGCAGCA+GGG | - | chr1.1:48960027-48960046 | None:intergenic | 60.0% | |
| GGAAGGACAGTTGTGTCGCG+AGG | - | chr1.1:48962182-48962201 | None:intergenic | 60.0% | |
| GGCATAGGAACAGTTCCCGG+CGG | - | chr1.1:48960076-48960095 | None:intergenic | 60.0% | |
| TGATACGGAGGAGCAGCAGC+AGG | - | chr1.1:48960028-48960047 | None:intergenic | 60.0% | |
| TGATGCTCCACATACGGCGC+CGG | - | chr1.1:48960178-48960197 | None:intergenic | 60.0% | |
| TGGCCGACGAGTTCATCCTC+CGG | + | chr1.1:48959949-48959968 | MS.gene073760:CDS | 60.0% | |
| TGTCCTTCCCTGTCGCCACA+TGG | + | chr1.1:48962193-48962212 | MS.gene073760:CDS | 60.0% | |
| TTACCAGCAGCATCCGGTGG+CGG | - | chr1.1:48959992-48960011 | None:intergenic | 60.0% | |
| !! | TGATCATACGGCGCCGGCAA+AGG | - | chr1.1:48960097-48960116 | None:intergenic | 60.0% |
| CGGTTACCAGCAGCATCCGG+TGG | - | chr1.1:48959995-48960014 | None:intergenic | 65.0% | |
| ! | AGACACGGTGGCGGTGGAAG+TGG | + | chr1.1:48959929-48959948 | MS.gene073760:CDS | 65.0% |
| ! | GAGGTGTCAGCAACAGGCGC+CGG | + | chr1.1:48960150-48960169 | MS.gene073760:CDS | 65.0% |
| !! | TACGGCGCCGGCAAAGGCAT+AGG | - | chr1.1:48960091-48960110 | None:intergenic | 65.0% |
| !! | GGCGGTGGCGGAGGAGTTAC+CGG | - | chr1.1:48959971-48959990 | None:intergenic | 70.0% |
| !! | GGTGGCGGAGGAGTTACCGG+AGG | - | chr1.1:48959968-48959987 | None:intergenic | 70.0% |
| GGAACAGTTCCCGGCGGCGG+AGG | - | chr1.1:48960070-48960089 | None:intergenic | 75.0% | |
| ! | CCAGCAGCATCCGGTGGCGG+CGG | - | chr1.1:48959989-48960008 | None:intergenic | 75.0% |
| ! | CGTCGGAGACACGGTGGCGG+TGG | + | chr1.1:48959923-48959942 | MS.gene073760:CDS | 75.0% |
| !! | TCAGCAACAGGCGCCGGCGC+CGG | + | chr1.1:48960156-48960175 | MS.gene073760:CDS | 75.0% |
| !! | TCCACATACGGCGCCGGCGC+CGG | - | chr1.1:48960172-48960191 | None:intergenic | 75.0% |
| ! | CCGCCGCCACCGGATGCTGC+TGG | + | chr1.1:48959986-48960005 | MS.gene073760:CDS | 80.0% |
| ! | TCCTCCGCCACCGCCGCCAC+CGG | + | chr1.1:48959976-48959995 | MS.gene073760:CDS | 80.0% |
| !! | GCAGCATCCGGTGGCGGCGG+TGG | - | chr1.1:48959986-48960005 | None:intergenic | 80.0% |
| !! | GCATCCGGTGGCGGCGGTGG+CGG | - | chr1.1:48959983-48960002 | None:intergenic | 80.0% |
| !! | TCCGGTGGCGGCGGTGGCGG+AGG | - | chr1.1:48959980-48959999 | None:intergenic | 85.0% |
| !!! | GCCGGCGCCGGCGCCGTATG+TGG | + | chr1.1:48960168-48960187 | MS.gene073760:CDS | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 48959890 | 48963198 | 48959890 | ID=MS.gene073760 |
| chr1.1 | mRNA | 48959890 | 48963198 | 48959890 | ID=MS.gene073760.t1;Parent=MS.gene073760 |
| chr1.1 | exon | 48959890 | 48960320 | 48959890 | ID=MS.gene073760.t1.exon1;Parent=MS.gene073760.t1 |
| chr1.1 | CDS | 48959890 | 48960320 | 48959890 | ID=cds.MS.gene073760.t1;Parent=MS.gene073760.t1 |
| chr1.1 | exon | 48961710 | 48962214 | 48961710 | ID=MS.gene073760.t1.exon2;Parent=MS.gene073760.t1 |
| chr1.1 | CDS | 48961710 | 48962214 | 48961710 | ID=cds.MS.gene073760.t1;Parent=MS.gene073760.t1 |
| chr1.1 | exon | 48963076 | 48963198 | 48963076 | ID=MS.gene073760.t1.exon3;Parent=MS.gene073760.t1 |
| chr1.1 | CDS | 48963076 | 48963198 | 48963076 | ID=cds.MS.gene073760.t1;Parent=MS.gene073760.t1 |
| Gene Sequence |
| Protein sequence |
