AlfalfaGEDB | MS.gene059051

M. sativa cultivar XinJiangDaYe / MS.gene059051

KEGG: -
GO: GO:0003674 GO:0004857 GO:0004864 GO:0005488 GO:0006950 GO:0006952 GO:0007165 GO:0008150 GO:0008289 GO:0009738 GO:0009755 GO:0009987 GO:0010427 GO:0019208 GO:0019212 GO:0019840 GO:0019888 GO:0030234 GO:0031406 GO:0033293 GO:0036094 GO:0038023 GO:0042562 GO:0043167 GO:0043168 GO:0043177 GO:0043178 GO:0050789 GO:0050794 GO:0050896 GO:0060089 GO:0065007 GO:0098772
PFAM: PF00407.22

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene059051.t1	XP_003594839.1	73.2	157	7	1	1	122	1	157	2.30E-51	211.5

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene059051.t1	Q06931	65.0	157	20	1	1	122	1	157	2.4e-46	186.0

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene059051.t1	G7INA7	73.2	157	7	1	1	122	1	157	1.6e-51	211.5

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene053963	MS.gene059051	0.820439	6.85E-53	-1.69E-46
MS.gene059051	MS.gene066513	0.844645	6.65E-59	-1.69E-46
MS.gene059051	MS.gene068565	0.80546	1.32E-49	-1.69E-46
MS.gene059051	MS.gene071846	0.821793	3.34E-53	-1.69E-46
MS.gene059051	MS.gene073239	0.808467	3.05E-50	-1.69E-46
MS.gene059051	MS.gene073760	0.800381	1.48E-48	-1.69E-46
MS.gene059051	MS.gene21776	0.813721	2.22E-51	-1.69E-46
MS.gene059051	MS.gene30085	0.801523	8.65E-49	-1.69E-46
MS.gene059051	MS.gene31855	0.808464	3.06E-50	-1.69E-46
MS.gene059051	MS.gene32801	0.846527	2.05E-59	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene059051.t1	MTR_2g035220	73.248	157	7	1	1	122	1	157	1.49e-72	213
MS.gene059051.t1	MTR_2g035210	70.701	157	11	1	1	122	1	157	6.19e-70	207
MS.gene059051.t1	MTR_2g035190	70.701	157	11	1	1	122	1	157	2.87e-69	205
MS.gene059051.t1	MTR_2g035320	66.879	157	17	1	1	122	1	157	2.57e-66	197
MS.gene059051.t1	MTR_2g035320	86.458	96	13	0	27	122	27	122	1.19e-56	172
MS.gene059051.t1	MTR_6g033450	51.592	157	41	1	1	122	1	157	3.58e-44	141
MS.gene059051.t1	MTR_4g120970	51.592	157	41	1	1	122	1	157	3.58e-44	141
MS.gene059051.t1	MTR_2g035150	48.408	157	46	1	1	122	1	157	9.60e-40	130
MS.gene059051.t1	MTR_2g035100	46.497	157	49	1	1	122	1	157	4.84e-39	128
MS.gene059051.t1	MTR_2g035105	46.497	157	49	1	1	122	1	157	4.95e-39	128

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 33 sgRNAs with CRISPR-Local

Find 44 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AGAGCTTTGTAGAGTTTAGC+TGG	0.395172	2.4:+55925365	None:intergenic
AGATAGAACTGCATCACCTT+TGG	0.408990	2.4:+55924820	None:intergenic
AGCAGTACGTGAGGAGACTA+AGG	0.536209	2.4:-55924795	MS.gene059051:CDS
AGCAGTGGATGAGGCAAACT+TGG	0.402684	2.4:-55924969	MS.gene059051:CDS
AGTGTTGTGGCTGGCTCTGA+TGG	0.429803	2.4:-55924878	MS.gene059051:CDS
ATACATTTACTTAATAATTA+GGG	0.345110	2.4:+55924723	None:intergenic
ATAGCATAGTAGGAGGAACA+GGG	0.716365	2.4:-55924937	MS.gene059051:CDS
CAAAGGAACTGGACTTATCA+AGG	0.516806	2.4:-55924771	MS.gene059051:CDS
CAAATTAGAAGCAGTGGATG+AGG	0.520372	2.4:-55924978	MS.gene059051:CDS
CAGTTGAGACATGTTCATCA+AGG	0.603838	2.4:+55925393	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GGATACAACTATAGCATAGT+AGG	-	chr2.4:55925196-55925215	MS.gene059051:intron	35.0%
TACAACTATAGCATAGTAGG+AGG	-	chr2.4:55925199-55925218	MS.gene059051:intron	35.0%
TATGATGTGTGTATTGTAGG+TGG	-	chr2.4:55925121-55925140	MS.gene059051:intron	35.0%
AGATAGAACTGCATCACCTT+TGG	+	chr2.4:55925326-55925345	None:intergenic	40.0%
ATAGCATAGTAGGAGGAACA+GGG	-	chr2.4:55925206-55925225	MS.gene059051:intron	40.0%
CAAAGGAACTGGACTTATCA+AGG	-	chr2.4:55925372-55925391	MS.gene059051:CDS	40.0%
CAAATTAGAAGCAGTGGATG+AGG	-	chr2.4:55925165-55925184	MS.gene059051:intron	40.0%
CAGTTGAGACATGTTCATCA+AGG	+	chr2.4:55924753-55924772	None:intergenic	40.0%
CTTGATAAGTCCAGTTCCTT+TGG	+	chr2.4:55925374-55925393	None:intergenic	40.0%
GCTACACAAATTAGAAGCAG+TGG	-	chr2.4:55925159-55925178	MS.gene059051:intron	40.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2.4	gene	55924733	55925432	55924733	ID=MS.gene059051
chr2.4	mRNA	55924733	55925432	55924733	ID=MS.gene059051.t1;Parent=MS.gene059051
chr2.4	exon	55925357	55925432	55925357	ID=MS.gene059051.t1.exon1;Parent=MS.gene059051.t1
chr2.4	CDS	55925357	55925432	55925357	ID=cds.MS.gene059051.t1;Parent=MS.gene059051.t1
chr2.4	exon	55924733	55925025	55924733	ID=MS.gene059051.t1.exon2;Parent=MS.gene059051.t1
chr2.4	CDS	55924733	55925025	55924733	ID=cds.MS.gene059051.t1;Parent=MS.gene059051.t1

Gene Sequence

>MS.gene059051

ATGGGTGTTTTTGTTTTCCTTGATGAACATGTCTCAACTGTGGCTCCAGCTAAACTCTACAAAGCTCTACAAAAATGTTAACTGTTGTTGTTGTGGAGTGAGCGACAGTTAACTGTTGTTTATGGTATTTTGGTATTTTTGTGGTGTGTGAAGAACAAAATGAAAGTGAGAAAAGTTGTTTTTTTGTAACAATTACACGTCTCTACAAAAAACTAAAACATTTACACGGTTGATTTTTTTTAGGACTAGAGTTGATTGTTGGTATAGTGAAATGAGATTCAACAAACAAGTAATTAACGATATCCAGTTACTTTCAGGTCAACCGATGACTGAAATAATTTTTAGTCAAACTTTATTTACATTTAAGGAAACAAAACTTATATAAATTTATGATGTGTGTATTGTAGGTGGCAAAACCGACTTTGTGCTACACAAATTAGAAGCAGTGGATGAGGCAAACTTGGGATACAACTATAGCATAGTAGGAGGAACAGGGTTGGATGAAAGTTTAGAGAAAGTTGAATTCGAGACAAGTGTTGTGGCTGGCTCTGATGGTGGTTCCATTGTTAAGATTTCAGTGAAATACCACACCAAAGGTGATGCAGTTCTATCTGAAGCAGTACGTGAGGAGACTAAGGCCAAAGGAACTGGACTTATCAAGGCCATTGAGGGTTACGTTTTGGCAAACCCTAATTATTAA

Protein sequence

>MS.gene059051.t1

MGVFVFLDEHVSTVAPAKLYKALQKCGKTDFVLHKLEAVDEANLGYNYSIVGGTGLDESLEKVEFETSVVAGSDGGSIVKISVKYHTKGDAVLSEAVREETKAKGTGLIKAIEGYVLANPNY