Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene073800.t1 | XP_013468266.1 | 92.5 | 743 | 55 | 1 | 1 | 743 | 1 | 742 | 0.00E+00 | 1135.9 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene073800.t1 | Q93WK5 | 44.1 | 757 | 291 | 19 | 36 | 739 | 36 | 713 | 1.3e-95 | 352.4 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene073800.t1 | A0A072VLK8 | 92.5 | 743 | 55 | 1 | 1 | 743 | 1 | 742 | 0.0e+00 | 1135.9 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene054412 | MS.gene073800 | 0.814996 | 1.16E-51 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene073800.t1 | MTR_1g067110 | 96.770 | 743 | 23 | 1 | 1 | 743 | 1 | 742 | 0.0 | 1492 |
MS.gene073800.t1 | MTR_1g067110 | 96.234 | 717 | 26 | 1 | 1 | 717 | 1 | 716 | 0.0 | 1432 |
MS.gene073800.t1 | MTR_1g067110 | 96.367 | 578 | 20 | 1 | 166 | 743 | 1 | 577 | 0.0 | 1147 |
MS.gene073800.t1 | MTR_4g061360 | 43.539 | 712 | 361 | 12 | 56 | 737 | 63 | 763 | 1.73e-149 | 457 |
MS.gene073800.t1 | MTR_3g092780 | 32.759 | 696 | 371 | 20 | 73 | 737 | 44 | 673 | 1.59e-73 | 253 |
MS.gene073800.t1 | MTR_3g092780 | 32.759 | 696 | 370 | 21 | 73 | 737 | 44 | 672 | 5.90e-73 | 251 |
MS.gene073800.t1 | MTR_3g092780 | 32.703 | 688 | 341 | 23 | 73 | 737 | 44 | 632 | 3.94e-71 | 246 |
MS.gene073800.t1 | MTR_3g092780 | 32.703 | 688 | 340 | 24 | 73 | 737 | 44 | 631 | 1.66e-70 | 244 |
MS.gene073800.t1 | MTR_7g118260 | 58.915 | 129 | 53 | 0 | 78 | 206 | 7 | 135 | 5.48e-46 | 173 |
MS.gene073800.t1 | MTR_7g118260 | 60.784 | 51 | 17 | 1 | 687 | 737 | 499 | 546 | 4.52e-11 | 66.6 |
MS.gene073800.t1 | MTR_7g118260 | 58.915 | 129 | 53 | 0 | 78 | 206 | 7 | 135 | 6.34e-46 | 174 |
MS.gene073800.t1 | MTR_7g118260 | 60.784 | 51 | 17 | 1 | 687 | 737 | 536 | 583 | 4.05e-11 | 67.0 |
MS.gene073800.t1 | MTR_3g037390 | 42.188 | 128 | 74 | 0 | 79 | 206 | 18 | 145 | 1.65e-25 | 112 |
MS.gene073800.t1 | MTR_3g037390 | 50.725 | 69 | 31 | 1 | 677 | 745 | 483 | 548 | 1.89e-11 | 67.8 |
MS.gene073800.t1 | MTR_4g108880 | 41.406 | 128 | 75 | 0 | 79 | 206 | 27 | 154 | 1.81e-25 | 112 |
MS.gene073800.t1 | MTR_4g108880 | 50.725 | 69 | 31 | 1 | 677 | 745 | 490 | 555 | 8.00e-12 | 68.9 |
MS.gene073800.t1 | MTR_2g450070 | 38.525 | 122 | 72 | 2 | 85 | 206 | 22 | 140 | 1.47e-22 | 103 |
MS.gene073800.t1 | MTR_2g450070 | 38.525 | 122 | 72 | 2 | 85 | 206 | 22 | 140 | 1.63e-22 | 103 |
MS.gene073800.t1 | MTR_1g032570 | 35.366 | 164 | 91 | 3 | 85 | 247 | 15 | 164 | 6.64e-22 | 101 |
MS.gene073800.t1 | MTR_3g102600 | 39.200 | 125 | 73 | 2 | 85 | 209 | 12 | 133 | 1.73e-21 | 93.2 |
MS.gene073800.t1 | MTR_3g106220 | 37.705 | 122 | 73 | 2 | 85 | 206 | 12 | 130 | 4.77e-21 | 98.6 |
MS.gene073800.t1 | MTR_4g121020 | 33.121 | 157 | 102 | 1 | 85 | 241 | 35 | 188 | 8.52e-21 | 98.2 |
MS.gene073800.t1 | MTR_4g121020 | 33.121 | 157 | 102 | 1 | 85 | 241 | 35 | 188 | 8.61e-21 | 98.2 |
MS.gene073800.t1 | MTR_2g034960 | 39.344 | 122 | 71 | 1 | 85 | 206 | 33 | 151 | 9.67e-21 | 97.4 |
MS.gene073800.t1 | MTR_3g102600 | 39.200 | 125 | 73 | 2 | 85 | 209 | 12 | 133 | 1.37e-20 | 91.7 |
MS.gene073800.t1 | MTR_4g131580 | 37.705 | 122 | 73 | 1 | 85 | 206 | 21 | 139 | 3.33e-20 | 95.9 |
MS.gene073800.t1 | MTR_1g013170 | 34.586 | 133 | 84 | 2 | 85 | 217 | 9 | 138 | 4.36e-19 | 91.7 |
MS.gene073800.t1 | MTR_4g131570 | 36.066 | 122 | 75 | 1 | 85 | 206 | 21 | 139 | 1.01e-18 | 91.3 |
MS.gene073800.t1 | MTR_3g086100 | 36.066 | 122 | 75 | 1 | 85 | 206 | 17 | 135 | 3.07e-18 | 89.4 |
MS.gene073800.t1 | MTR_4g131600 | 33.607 | 122 | 78 | 1 | 85 | 206 | 24 | 142 | 4.83e-17 | 85.9 |
MS.gene073800.t1 | MTR_1g013180 | 35.246 | 122 | 76 | 2 | 85 | 206 | 160 | 278 | 8.05e-17 | 85.5 |
MS.gene073800.t1 | MTR_8g079940 | 35.246 | 122 | 76 | 1 | 85 | 206 | 29 | 147 | 1.33e-16 | 84.3 |
MS.gene073800.t1 | MTR_3g102600 | 43.678 | 87 | 46 | 2 | 123 | 209 | 1 | 84 | 1.46e-16 | 77.4 |
MS.gene073800.t1 | MTR_3g102600 | 43.678 | 87 | 46 | 2 | 123 | 209 | 1 | 84 | 8.44e-16 | 76.6 |
MS.gene073800.t1 | MTR_7g490310 | 30.935 | 139 | 78 | 2 | 85 | 205 | 9 | 147 | 6.90e-15 | 75.5 |
MS.gene073800.t1 | MTR_7g117705 | 32.331 | 133 | 86 | 3 | 85 | 216 | 9 | 138 | 1.10e-14 | 77.8 |
MS.gene073800.t1 | MTR_5g036480 | 27.717 | 184 | 104 | 4 | 83 | 252 | 14 | 182 | 1.64e-13 | 71.2 |
MS.gene073800.t1 | MTR_3g102590 | 31.469 | 143 | 94 | 2 | 85 | 226 | 12 | 151 | 3.40e-13 | 69.3 |
MS.gene073800.t1 | MTR_3g093860 | 35.200 | 125 | 68 | 2 | 87 | 199 | 20 | 143 | 4.40e-13 | 68.2 |
MS.gene073800.t1 | MTR_1g032570 | 37.615 | 109 | 53 | 3 | 140 | 247 | 1 | 95 | 6.91e-13 | 72.4 |
MS.gene073800.t1 | MTR_8g093040 | 32.520 | 123 | 78 | 2 | 85 | 206 | 18 | 136 | 7.12e-13 | 70.1 |
MS.gene073800.t1 | MTR_3g102590 | 30.070 | 143 | 96 | 2 | 85 | 226 | 12 | 151 | 1.35e-12 | 68.6 |
MS.gene073800.t1 | MTR_8g024260 | 60.345 | 58 | 20 | 1 | 685 | 742 | 577 | 631 | 6.77e-12 | 69.3 |
MS.gene073800.t1 | MTR_1g049100 | 31.746 | 126 | 75 | 2 | 85 | 199 | 8 | 133 | 1.46e-11 | 64.7 |
MS.gene073800.t1 | MTR_3g037390 | 50.725 | 69 | 31 | 1 | 677 | 745 | 379 | 444 | 1.88e-11 | 67.8 |
MS.gene073800.t1 | MTR_7g118260 | 60.784 | 51 | 17 | 1 | 687 | 737 | 450 | 497 | 3.12e-11 | 67.0 |
MS.gene073800.t1 | MTR_7g118260 | 60.784 | 51 | 17 | 1 | 687 | 737 | 366 | 413 | 3.15e-11 | 66.6 |
MS.gene073800.t1 | MTR_3g078613 | 28.477 | 151 | 93 | 4 | 82 | 223 | 20 | 164 | 3.76e-11 | 63.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene073800.t1 | AT5G02810 | 49.330 | 746 | 268 | 23 | 36 | 739 | 36 | 713 | 7.24e-174 | 518 |
MS.gene073800.t1 | AT5G02810 | 46.377 | 621 | 230 | 22 | 161 | 739 | 10 | 569 | 1.60e-107 | 341 |
MS.gene073800.t1 | AT5G60100 | 46.804 | 438 | 162 | 13 | 73 | 495 | 52 | 433 | 2.63e-91 | 295 |
MS.gene073800.t1 | AT5G60100 | 45.000 | 100 | 39 | 4 | 647 | 737 | 392 | 484 | 5.81e-13 | 72.4 |
MS.gene073800.t1 | AT5G60100 | 46.804 | 438 | 162 | 13 | 73 | 495 | 52 | 433 | 2.63e-91 | 295 |
MS.gene073800.t1 | AT5G60100 | 45.000 | 100 | 39 | 4 | 647 | 737 | 392 | 484 | 5.81e-13 | 72.4 |
MS.gene073800.t1 | AT5G60100 | 46.804 | 438 | 162 | 13 | 73 | 495 | 52 | 433 | 2.63e-91 | 295 |
MS.gene073800.t1 | AT5G60100 | 45.000 | 100 | 39 | 4 | 647 | 737 | 392 | 484 | 5.81e-13 | 72.4 |
MS.gene073800.t1 | AT5G60100 | 48.462 | 390 | 137 | 11 | 73 | 448 | 52 | 391 | 3.08e-89 | 287 |
MS.gene073800.t1 | AT5G60100 | 48.462 | 390 | 137 | 11 | 73 | 448 | 52 | 391 | 3.08e-89 | 287 |
MS.gene073800.t1 | AT5G60100 | 48.462 | 390 | 137 | 11 | 73 | 448 | 52 | 391 | 3.08e-89 | 287 |
MS.gene073800.t1 | AT5G60100 | 44.086 | 465 | 162 | 14 | 73 | 495 | 52 | 460 | 2.99e-85 | 280 |
MS.gene073800.t1 | AT5G60100 | 45.000 | 100 | 39 | 4 | 647 | 737 | 419 | 511 | 4.94e-13 | 72.8 |
MS.gene073800.t1 | AT2G46790 | 57.463 | 134 | 57 | 0 | 73 | 206 | 25 | 158 | 7.32e-51 | 184 |
MS.gene073800.t1 | AT2G46790 | 57.463 | 134 | 57 | 0 | 73 | 206 | 25 | 158 | 1.03e-50 | 185 |
MS.gene073800.t1 | AT2G46790 | 48.936 | 94 | 42 | 3 | 643 | 736 | 371 | 458 | 5.36e-16 | 82.0 |
MS.gene073800.t1 | AT5G24470 | 59.701 | 134 | 54 | 0 | 73 | 206 | 38 | 171 | 1.35e-49 | 184 |
MS.gene073800.t1 | AT5G24470 | 64.151 | 53 | 16 | 1 | 691 | 743 | 508 | 557 | 3.09e-12 | 70.5 |
MS.gene073800.t1 | AT5G61380 | 40.625 | 128 | 76 | 0 | 79 | 206 | 13 | 140 | 1.37e-23 | 106 |
MS.gene073800.t1 | AT5G61380 | 48.571 | 70 | 33 | 1 | 676 | 745 | 517 | 583 | 2.25e-11 | 67.8 |
MS.gene073800.t1 | AT3G16857 | 35.227 | 176 | 103 | 3 | 85 | 254 | 37 | 207 | 3.68e-22 | 102 |
MS.gene073800.t1 | AT3G16857 | 35.227 | 176 | 103 | 3 | 85 | 254 | 37 | 207 | 3.97e-22 | 102 |
MS.gene073800.t1 | AT2G25180 | 33.702 | 181 | 87 | 5 | 85 | 261 | 17 | 168 | 1.74e-21 | 100 |
MS.gene073800.t1 | AT4G31920 | 38.017 | 121 | 72 | 2 | 85 | 205 | 17 | 134 | 3.31e-19 | 92.4 |
MS.gene073800.t1 | AT2G01760 | 37.705 | 122 | 74 | 1 | 85 | 206 | 11 | 130 | 5.81e-18 | 87.0 |
MS.gene073800.t1 | AT1G67710 | 35.252 | 139 | 83 | 2 | 85 | 219 | 11 | 146 | 1.32e-17 | 87.4 |
MS.gene073800.t1 | AT2G46670 | 48.936 | 94 | 42 | 3 | 643 | 736 | 86 | 173 | 2.55e-17 | 81.3 |
MS.gene073800.t1 | AT2G46790 | 48.936 | 94 | 42 | 3 | 643 | 736 | 214 | 301 | 4.61e-16 | 80.5 |
MS.gene073800.t1 | AT2G46790 | 48.936 | 94 | 42 | 3 | 643 | 736 | 214 | 301 | 4.61e-16 | 80.5 |
MS.gene073800.t1 | AT2G46790 | 48.936 | 94 | 42 | 3 | 643 | 736 | 254 | 341 | 5.84e-16 | 80.9 |
MS.gene073800.t1 | AT2G46790 | 70.732 | 41 | 12 | 0 | 166 | 206 | 1 | 41 | 5.71e-15 | 77.8 |
MS.gene073800.t1 | AT3G16857 | 35.461 | 141 | 80 | 3 | 120 | 254 | 2 | 137 | 1.10e-15 | 81.6 |
MS.gene073800.t1 | AT3G62670 | 34.524 | 168 | 101 | 6 | 77 | 242 | 34 | 194 | 1.09e-14 | 77.4 |
MS.gene073800.t1 | AT2G01760 | 37.168 | 113 | 68 | 2 | 94 | 206 | 49 | 158 | 6.97e-14 | 75.1 |
MS.gene073800.t1 | AT5G58080 | 31.967 | 122 | 79 | 1 | 85 | 206 | 18 | 135 | 8.42e-14 | 75.5 |
MS.gene073800.t1 | AT1G59940 | 34.351 | 131 | 71 | 2 | 87 | 205 | 127 | 254 | 2.67e-13 | 72.4 |
MS.gene073800.t1 | AT1G10470 | 31.944 | 144 | 87 | 2 | 80 | 213 | 15 | 157 | 2.96e-13 | 70.9 |
MS.gene073800.t1 | AT5G62920 | 35.772 | 123 | 64 | 4 | 77 | 199 | 41 | 148 | 3.98e-13 | 68.9 |
MS.gene073800.t1 | AT1G59940 | 33.835 | 133 | 73 | 2 | 85 | 205 | 33 | 162 | 4.38e-13 | 70.1 |
MS.gene073800.t1 | AT1G10470 | 31.944 | 144 | 87 | 2 | 80 | 213 | 29 | 171 | 5.32e-13 | 70.5 |
MS.gene073800.t1 | AT3G56380 | 33.077 | 130 | 77 | 2 | 85 | 204 | 20 | 149 | 1.17e-12 | 66.6 |
MS.gene073800.t1 | AT3G48100 | 35.433 | 127 | 68 | 4 | 85 | 199 | 25 | 149 | 1.57e-12 | 67.4 |
MS.gene073800.t1 | AT1G19050 | 33.333 | 132 | 75 | 2 | 85 | 205 | 24 | 153 | 2.21e-12 | 67.4 |
MS.gene073800.t1 | AT2G40670 | 32.593 | 135 | 79 | 2 | 81 | 203 | 25 | 159 | 6.05e-12 | 65.1 |
MS.gene073800.t1 | AT3G56380 | 32.824 | 131 | 77 | 3 | 85 | 204 | 20 | 150 | 1.23e-11 | 63.9 |
MS.gene073800.t1 | AT3G57040 | 28.986 | 138 | 79 | 2 | 87 | 205 | 11 | 148 | 2.07e-11 | 65.1 |
MS.gene073800.t1 | AT3G57040 | 28.986 | 138 | 79 | 2 | 87 | 205 | 11 | 148 | 2.07e-11 | 65.1 |
MS.gene073800.t1 | AT1G74890 | 31.618 | 136 | 78 | 2 | 77 | 212 | 34 | 154 | 4.09e-11 | 63.5 |
Find 188 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCCTTGATTTAATAGATTTC+TGG | 0.104631 | 1.3:-47029341 | None:intergenic |
TGCACTTCTATACAAGATTA+TGG | 0.158802 | 1.3:+47028700 | MS.gene073800:CDS |
AGAAGTTGGGTCTTCTATTT+AGG | 0.167561 | 1.3:-47032371 | None:intergenic |
CCAGATTGATTCTCACAATT+AGG | 0.182320 | 1.3:-47032264 | None:intergenic |
ATTGCAAGCTTGGAAGATTT+TGG | 0.231070 | 1.3:+47028613 | MS.gene073800:CDS |
GATGGTTCCTCCAGTCTTAA+AGG | 0.244142 | 1.3:+47031194 | MS.gene073800:CDS |
TGCTAGCAACAACATTGATA+TGG | 0.274288 | 1.3:+47032790 | MS.gene073800:CDS |
TGCTAGCATTATTTGAGTTC+TGG | 0.274365 | 1.3:-47032775 | None:intergenic |
AATGGAAGCAATGGACAAAA+TGG | 0.284536 | 1.3:+47033220 | MS.gene073800:CDS |
CTCTCTTATAACTGCAGATT+TGG | 0.286096 | 1.3:-47032837 | None:intergenic |
AAAGGAGTGTCTAGAGAAAA+AGG | 0.305223 | 1.3:+47031212 | MS.gene073800:CDS |
CAGATTGATTCTCACAATTA+GGG | 0.310638 | 1.3:-47032263 | None:intergenic |
AAAACCTGTGGCAGCATGTT+TGG | 0.312351 | 1.3:+47028960 | MS.gene073800:CDS |
CCTTGATTTAATAGATTTCT+GGG | 0.316876 | 1.3:-47029340 | None:intergenic |
GAAGTTGGGTCTTCTATTTA+GGG | 0.323812 | 1.3:-47032370 | None:intergenic |
AGAAGCTGGTCCTGCAATTC+AGG | 0.327601 | 1.3:+47032476 | MS.gene073800:CDS |
GTGGCAATGCCTGGTTTATC+AGG | 0.332763 | 1.3:+47028674 | MS.gene073800:CDS |
TGAAAAGTTTGATAACAATT+CGG | 0.339114 | 1.3:+47029368 | MS.gene073800:CDS |
GAAAAGTTTGATAACAATTC+GGG | 0.346605 | 1.3:+47029369 | MS.gene073800:CDS |
CAGCAAATGGATTGCAAGCT+TGG | 0.350061 | 1.3:+47028603 | MS.gene073800:CDS |
TAATGTTGCAGAACCTGAAC+TGG | 0.350615 | 1.3:-47035477 | None:intergenic |
GATGTCATCTCATGACTCTA+TGG | 0.359807 | 1.3:+47028865 | MS.gene073800:CDS |
GACAGCAACAATGGACTTGC+TGG | 0.359847 | 1.3:+47033280 | MS.gene073800:CDS |
TTTACATATTAGATCCCTTA+AGG | 0.361725 | 1.3:+47026549 | MS.gene073800:CDS |
GAGCAAGATAATGGAAGTTT+AGG | 0.362759 | 1.3:+47029402 | MS.gene073800:CDS |
GTAACTTCTAAGCTGTTATT+AGG | 0.363149 | 1.3:-47032698 | None:intergenic |
TCCCACTGAGAGCCTGATTT+AGG | 0.367118 | 1.3:-47031099 | None:intergenic |
TGACAAGGGTTCTGCTACTC+AGG | 0.372499 | 1.3:+47033003 | MS.gene073800:CDS |
AATTTGCTCATTGAATTTAG+AGG | 0.373603 | 1.3:-47032223 | None:intergenic |
TTGGTTGTTGATGCCTCTGC+TGG | 0.385063 | 1.3:-47032860 | None:intergenic |
CTCAAGGGGCAATTATTTGT+TGG | 0.386253 | 1.3:+47026518 | MS.gene073800:CDS |
GCACTTCTATACAAGATTAT+GGG | 0.386285 | 1.3:+47028701 | MS.gene073800:CDS |
TTTAAGCTCATTCTTGCGTA+TGG | 0.388945 | 1.3:-47028939 | None:intergenic |
CACTACCATCACCATTGTTC+AGG | 0.390653 | 1.3:-47029425 | None:intergenic |
CTGGGTTTGGTCACCGCAAC+GGG | 0.391335 | 1.3:-47035458 | None:intergenic |
TTCCGTTCATCCTGAATTGC+AGG | 0.392365 | 1.3:-47032486 | None:intergenic |
ACTCCACAAGCAAGACCTTA+AGG | 0.392485 | 1.3:-47026564 | None:intergenic |
GTTGTCAATATCTGAGAAGT+TGG | 0.394245 | 1.3:-47032385 | None:intergenic |
AGCAATGATGAGCAAGATAA+TGG | 0.400711 | 1.3:+47029393 | MS.gene073800:CDS |
GCATTATTTGAGTTCTGGTT+AGG | 0.403967 | 1.3:-47032770 | None:intergenic |
GCGGTTCCAGTCAAAATTGC+AGG | 0.406686 | 1.3:+47032168 | MS.gene073800:intron |
GCGGTGACCAAACCCAGTTC+AGG | 0.406785 | 1.3:+47035464 | MS.gene073800:CDS |
TGGAGTGACTGATGGAGTTA+AGG | 0.413525 | 1.3:+47026435 | MS.gene073800:CDS |
GTCAACTTCTACAGCTCGTT+TGG | 0.415675 | 1.3:-47031073 | None:intergenic |
CTCACTTGCATTACCATTCG+AGG | 0.416999 | 1.3:-47035064 | None:intergenic |
TCAAGGGGCAATTATTTGTT+GGG | 0.420288 | 1.3:+47026519 | MS.gene073800:CDS |
TTGGTCAGCGTTTGCGGGAT+GGG | 0.420714 | 1.3:+47026359 | MS.gene073800:CDS |
GAAGCAACGCAGTGACAATA+TGG | 0.423326 | 1.3:-47026603 | None:intergenic |
CATCATGCTCAGGTGGCAAC+TGG | 0.423674 | 1.3:-47033075 | None:intergenic |
GTCTTTAAGTGTTTGTCAAA+GGG | 0.426456 | 1.3:+47028893 | MS.gene073800:CDS |
AAGAACTTGGTCAGCGTTTG+CGG | 0.431358 | 1.3:+47026353 | MS.gene073800:CDS |
GAAGATTCGGCATCATGCTC+AGG | 0.431544 | 1.3:-47033085 | None:intergenic |
CTTCGCAATTGTAGTTATGA+AGG | 0.432435 | 1.3:+47026622 | MS.gene073800:CDS |
CTTTCTTTCCTTCAGTCTAG+TGG | 0.435646 | 1.3:+47029291 | MS.gene073800:intron |
ATCCCTTAAGGTCTTGCTTG+TGG | 0.436804 | 1.3:+47026561 | MS.gene073800:CDS |
TTAACTGAGGTGGCAATGCC+TGG | 0.438214 | 1.3:+47028665 | MS.gene073800:CDS |
TTCCCTGCATATTTCAGCAT+TGG | 0.441824 | 1.3:-47031169 | None:intergenic |
TAAAATGAGATCAATATGAT+TGG | 0.443706 | 1.3:-47028645 | None:intergenic |
GGAGTTAAGGTTGGTGAGGG+AGG | 0.444636 | 1.3:+47026448 | MS.gene073800:CDS |
TTCTACAGCTCGTTTGGTCC+AGG | 0.448107 | 1.3:-47031067 | None:intergenic |
AACTTAAATGAAGGAGTAGC+TGG | 0.450112 | 1.3:+47026388 | MS.gene073800:CDS |
AATGGACTTGCTGGGAATAG+TGG | 0.453499 | 1.3:+47033289 | MS.gene073800:CDS |
TGGGCTGGAAAGCAGACGTT+TGG | 0.453554 | 1.3:-47032892 | None:intergenic |
AGAACTTGGTCAGCGTTTGC+GGG | 0.454509 | 1.3:+47026354 | MS.gene073800:CDS |
TTTCTTTCCTTCAGTCTAGT+GGG | 0.456206 | 1.3:+47029292 | MS.gene073800:intron |
TCTAGACACTCCTTTAAGAC+TGG | 0.457847 | 1.3:-47031204 | None:intergenic |
TTCCTTCAGTCTAGTGGGAG+TGG | 0.461821 | 1.3:+47029297 | MS.gene073800:intron |
GAAGTTGACAGTCCTAAATC+AGG | 0.462528 | 1.3:+47031087 | MS.gene073800:CDS |
CTCCACAAGCAAGACCTTAA+GGG | 0.463153 | 1.3:-47026563 | None:intergenic |
TCAGTTATTGAAGCAGCAAA+TGG | 0.463336 | 1.3:+47028590 | MS.gene073800:intron |
AGTATCAATAGAAGTGCTTC+AGG | 0.463935 | 1.3:+47033190 | MS.gene073800:CDS |
CCTAATTGTGAGAATCAATC+TGG | 0.463977 | 1.3:+47032264 | MS.gene073800:CDS |
AGTGCCAGTTGAAGGTAATA+CGG | 0.464184 | 1.3:+47033159 | MS.gene073800:CDS |
TGCAGAACCTGAACTGGGTT+TGG | 0.466814 | 1.3:-47035471 | None:intergenic |
CTCTTGAGCTCAGTTTAAAG+AGG | 0.474120 | 1.3:+47032439 | MS.gene073800:CDS |
AGTGGTGATGCTAGTGGAAA+TGG | 0.475297 | 1.3:+47033313 | MS.gene073800:CDS |
ATTCCAATGCTGAAATATGC+AGG | 0.475867 | 1.3:+47031166 | MS.gene073800:CDS |
TTCAATGAGCAAATTAATAG+AGG | 0.478804 | 1.3:+47032231 | MS.gene073800:CDS |
AGTCTTTAAGTGTTTGTCAA+AGG | 0.479846 | 1.3:+47028892 | MS.gene073800:CDS |
AGTCACCATTGACACTCATC+TGG | 0.480036 | 1.3:-47026327 | None:intergenic |
AAGGTTGGTGAGGGAGGGAA+TGG | 0.483694 | 1.3:+47026454 | MS.gene073800:CDS |
TTGTCAATATCTGAGAAGTT+GGG | 0.484449 | 1.3:-47032384 | None:intergenic |
TTAAGCTCATTCTTGCGTAT+GGG | 0.487300 | 1.3:-47028938 | None:intergenic |
TTTCCCGTATTACCTTCAAC+TGG | 0.488361 | 1.3:-47033163 | None:intergenic |
TGAAATATGCAGGGAAAAGA+TGG | 0.491685 | 1.3:+47031176 | MS.gene073800:CDS |
AGTGGGAGTGGCAGTGAAAG+TGG | 0.491905 | 1.3:+47029309 | MS.gene073800:CDS |
CCCAGAAATCTATTAAATCA+AGG | 0.500800 | 1.3:+47029340 | MS.gene073800:CDS |
AGCAGCGCTGCAATTAATGC+TGG | 0.502976 | 1.3:+47033244 | MS.gene073800:CDS |
GCTAGCAACAACATTGATAT+GGG | 0.503896 | 1.3:+47032791 | MS.gene073800:CDS |
CTTGGTCAGCGTTTGCGGGA+TGG | 0.504234 | 1.3:+47026358 | MS.gene073800:CDS |
GGGAGACTTCTTAGCATTGA+AGG | 0.505204 | 1.3:-47032648 | None:intergenic |
TCCTCCAAACATGCTGCCAC+AGG | 0.506809 | 1.3:-47028964 | None:intergenic |
GTGGTCAAAGTGCCAGTTGA+AGG | 0.508886 | 1.3:+47033151 | MS.gene073800:CDS |
ATTTGCTCATTGAATTTAGA+GGG | 0.509233 | 1.3:-47032222 | None:intergenic |
TCAAAACAAGAATTCTCAAA+GGG | 0.509421 | 1.3:+47033354 | MS.gene073800:CDS |
GGTAAAAGCATTATTAGCAG+TGG | 0.510774 | 1.3:-47032816 | None:intergenic |
ATGGAAGCAATGGACAAAAT+GGG | 0.515017 | 1.3:+47033221 | MS.gene073800:CDS |
AGAGAGGTGCTTTCATAAGC+AGG | 0.516010 | 1.3:+47033420 | MS.gene073800:CDS |
CAACATTATAGAGACGGCTT+AGG | 0.516236 | 1.3:+47035492 | MS.gene073800:CDS |
GCAAATTAATAGAGGACAGA+TGG | 0.519442 | 1.3:+47032239 | MS.gene073800:CDS |
AGAGTTGCTTCCGACACATC+CGG | 0.520860 | 1.3:-47032672 | None:intergenic |
GGGCAATTATTTGTTGGGAG+AGG | 0.522794 | 1.3:+47026524 | MS.gene073800:CDS |
GATGATGAAGTGAAATGTAA+TGG | 0.525442 | 1.3:+47026415 | MS.gene073800:CDS |
TTCAGGTTCGATATCAGAGC+AGG | 0.528122 | 1.3:+47034989 | MS.gene073800:intron |
GGAAGCAACAATGGAAGCAA+TGG | 0.529487 | 1.3:+47033211 | MS.gene073800:CDS |
GGGAAGAACAACTTAAATGA+AGG | 0.530123 | 1.3:+47026379 | MS.gene073800:CDS |
GAGTTAAGGTTGGTGAGGGA+GGG | 0.530743 | 1.3:+47026449 | MS.gene073800:CDS |
AACTTGAGCACAAGTGCTGT+CGG | 0.532765 | 1.3:-47031139 | None:intergenic |
TTATTTGAGTTCTGGTTAGG+AGG | 0.535911 | 1.3:-47032767 | None:intergenic |
ATGTCATCTCATGACTCTAT+GGG | 0.536687 | 1.3:+47028866 | MS.gene073800:CDS |
CTGATCAGTCTGCTTTCTCA+AGG | 0.536827 | 1.3:+47032523 | MS.gene073800:CDS |
CTTTGCATTTGAGAGTCAGA+AGG | 0.538723 | 1.3:-47032333 | None:intergenic |
GTGCCAGTTGAAGGTAATAC+GGG | 0.540221 | 1.3:+47033160 | MS.gene073800:CDS |
TACCGCAGCAACAGTCTCAA+GGG | 0.542656 | 1.3:+47026503 | MS.gene073800:CDS |
ACTTGAGCACAAGTGCTGTC+GGG | 0.543651 | 1.3:-47031138 | None:intergenic |
CCTAGAAAAGTTGAAGAAGC+TGG | 0.545226 | 1.3:+47032462 | MS.gene073800:CDS |
ACCTGTGGCAGCATGTTTGG+AGG | 0.552529 | 1.3:+47028963 | MS.gene073800:CDS |
GGTATCCAGATGAGTGTCAA+TGG | 0.554780 | 1.3:+47026322 | MS.gene073800:CDS |
ACATGTCAACAGACTTGATG+TGG | 0.557814 | 1.3:+47032197 | MS.gene073800:CDS |
ACTGGGTTTGGTCACCGCAA+CGG | 0.563586 | 1.3:-47035459 | None:intergenic |
GTACCGCAGCAACAGTCTCA+AGG | 0.568297 | 1.3:+47026502 | MS.gene073800:CDS |
ATCAAAACAAGAATTCTCAA+AGG | 0.571810 | 1.3:+47033353 | MS.gene073800:CDS |
AAATGTAATGGAGTGACTGA+TGG | 0.573227 | 1.3:+47026427 | MS.gene073800:CDS |
TGACAATGGTAGTGGCACTC+AGG | 0.582901 | 1.3:+47029446 | MS.gene073800:CDS |
GTCCTGCAATTCAGGATGAA+CGG | 0.586027 | 1.3:+47032484 | MS.gene073800:CDS |
GATGGAGTTAAGGTTGGTGA+GGG | 0.589139 | 1.3:+47026445 | MS.gene073800:CDS |
GTGACTGATGGAGTTAAGGT+TGG | 0.591130 | 1.3:+47026439 | MS.gene073800:CDS |
TCCTAAATCAGGCTCTCAGT+GGG | 0.591373 | 1.3:+47031098 | MS.gene073800:CDS |
AAGTCTCCCACCGGATGTGT+CGG | 0.592788 | 1.3:+47032662 | MS.gene073800:CDS |
AGTGCTTCAGGAAGCAACAA+TGG | 0.594073 | 1.3:+47033202 | MS.gene073800:CDS |
AGATACGACAACAACAATCC+TGG | 0.594626 | 1.3:+47032967 | MS.gene073800:CDS |
AGCGCTGCAATTAATGCTGG+AGG | 0.596114 | 1.3:+47033247 | MS.gene073800:CDS |
TTCCAATGCTGAAATATGCA+GGG | 0.597764 | 1.3:+47031167 | MS.gene073800:CDS |
GCATGTTAGCAACATTGCTG+TGG | 0.597791 | 1.3:-47033048 | None:intergenic |
AGTGCAATGCCTGATAAACC+AGG | 0.599268 | 1.3:-47028683 | None:intergenic |
CTGTTGTTGCTCCACACTGT+GGG | 0.599543 | 1.3:+47033119 | MS.gene073800:CDS |
ACTGTTGTTGCTCCACACTG+TGG | 0.604864 | 1.3:+47033118 | MS.gene073800:CDS |
TTTGCATTTGAGAGTCAGAA+GGG | 0.605063 | 1.3:-47032332 | None:intergenic |
TACTTGCTGCTGAACAGAAG+AGG | 0.605168 | 1.3:-47026482 | None:intergenic |
AATGTTGCAGAACCTGAACT+GGG | 0.605954 | 1.3:-47035476 | None:intergenic |
GATGCTAGTGGAAATGGAAG+TGG | 0.606551 | 1.3:+47033319 | MS.gene073800:CDS |
TGATGGAGTTAAGGTTGGTG+AGG | 0.607226 | 1.3:+47026444 | MS.gene073800:CDS |
AAAGAAAGGAGAGAAAAGAG+AGG | 0.608085 | 1.3:+47033404 | MS.gene073800:CDS |
ACAAACATAGACAGCAACAA+TGG | 0.609596 | 1.3:+47033271 | MS.gene073800:CDS |
ACAGCAACAATGGACTTGCT+GGG | 0.609766 | 1.3:+47033281 | MS.gene073800:CDS |
CTTGCTGGGAATAGTGGCAG+TGG | 0.611874 | 1.3:+47033295 | MS.gene073800:CDS |
GATATTCAATCTCATTCTAG+TGG | 0.613980 | 1.3:+47032740 | MS.gene073800:CDS |
TTTGTGCGACAGTCCTCGAA+TGG | 0.614472 | 1.3:+47035051 | MS.gene073800:CDS |
TTTAAACTGAGCTCAAGAGA+TGG | 0.614604 | 1.3:-47032435 | None:intergenic |
CAACGCAGTGACAATATGGC+GGG | 0.615660 | 1.3:-47026599 | None:intergenic |
GTTTGGTCACCGCAACGGGT+AGG | 0.616084 | 1.3:-47035454 | None:intergenic |
AATGGTGACTGTAAAGAACT+TGG | 0.617086 | 1.3:+47026340 | MS.gene073800:CDS |
GTTCTGCAACATTATAGAGA+CGG | 0.618524 | 1.3:+47035486 | MS.gene073800:CDS |
GCCCCTTGAGACTGTTGCTG+CGG | 0.622409 | 1.3:-47026505 | None:intergenic |
GATTCGGCATCATGCTCAGG+TGG | 0.622530 | 1.3:-47033082 | None:intergenic |
ATGTGAGACAACTTGTTGAG+AGG | 0.623924 | 1.3:-47032936 | None:intergenic |
AAATGAAGGAGTAGCTGGAG+AGG | 0.626419 | 1.3:+47026393 | MS.gene073800:CDS |
AGTGGCAGTGGTGATGCTAG+TGG | 0.626932 | 1.3:+47033307 | MS.gene073800:CDS |
GAACAACGACCACGATATCG+AGG | 0.628327 | 1.3:+47035024 | MS.gene073800:CDS |
GATGGTAGTGACAATGGTAG+TGG | 0.629804 | 1.3:+47029438 | MS.gene073800:CDS |
ACAAATTGCCCTCGATATCG+TGG | 0.630115 | 1.3:-47035033 | None:intergenic |
GTTGCTTCCGACACATCCGG+TGG | 0.630609 | 1.3:-47032669 | None:intergenic |
ACTTCTAAGCTGTTATTAGG+CGG | 0.632200 | 1.3:-47032695 | None:intergenic |
TTAGGCCTGAACAATGGTGA+TGG | 0.633257 | 1.3:+47029420 | MS.gene073800:CDS |
AGATTATGGGCCACCCAACA+CGG | 0.633500 | 1.3:+47028714 | MS.gene073800:CDS |
TGTTCAAGACCTACCCGTTG+CGG | 0.633864 | 1.3:+47035445 | MS.gene073800:CDS |
GGCACCACCTAAAATTGACA+AGG | 0.635166 | 1.3:+47032988 | MS.gene073800:CDS |
CAAAGGTACTAATAATGATG+AGG | 0.638016 | 1.3:+47032407 | MS.gene073800:CDS |
ACACTGTGGGTCATCAAATG+TGG | 0.640190 | 1.3:+47033132 | MS.gene073800:CDS |
AGACACTCCTTTAAGACTGG+AGG | 0.640992 | 1.3:-47031201 | None:intergenic |
GCGCTGCAATTAATGCTGGA+GGG | 0.641325 | 1.3:+47033248 | MS.gene073800:CDS |
TTTGCTCATTGAATTTAGAG+GGG | 0.646894 | 1.3:-47032221 | None:intergenic |
GTCCTAAATCAGGCTCTCAG+TGG | 0.647285 | 1.3:+47031097 | MS.gene073800:CDS |
AATGGTGATGGTAGTGACAA+TGG | 0.650813 | 1.3:+47029432 | MS.gene073800:CDS |
AGACTTCTTAGCATTGAAGG+TGG | 0.657516 | 1.3:-47032645 | None:intergenic |
AGTTATAAGAGAGCCAGCAG+AGG | 0.658218 | 1.3:+47032847 | MS.gene073800:CDS |
TTCTCAGATATTGACAACAA+AGG | 0.660645 | 1.3:+47032390 | MS.gene073800:CDS |
AATGCTAAGAAGTCTCCCAC+CGG | 0.662726 | 1.3:+47032653 | MS.gene073800:CDS |
ACCGCAGCAACAGTCTCAAG+GGG | 0.669084 | 1.3:+47026504 | MS.gene073800:CDS |
GGAAGTTTAGGCCTGAACAA+TGG | 0.671051 | 1.3:+47029414 | MS.gene073800:CDS |
AACAACGACCACGATATCGA+GGG | 0.671078 | 1.3:+47035025 | MS.gene073800:CDS |
TTGCTTCCGACACATCCGGT+GGG | 0.683631 | 1.3:-47032668 | None:intergenic |
GCAACGCAGTGACAATATGG+CGG | 0.685975 | 1.3:-47026600 | None:intergenic |
CATGTCAACAGACTTGATGT+GGG | 0.686791 | 1.3:+47032198 | MS.gene073800:CDS |
ACATTTGATGACCCACAGTG+TGG | 0.694810 | 1.3:-47033130 | None:intergenic |
TCTGACTCTCAAATGCAAAG+CGG | 0.707947 | 1.3:+47032336 | MS.gene073800:CDS |
CTTGTTGAGAGGTACACATG+AGG | 0.720635 | 1.3:-47032925 | None:intergenic |
GCACCACCTAAAATTGACAA+GGG | 0.725107 | 1.3:+47032989 | MS.gene073800:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.3 | gene | 47026313 | 47035513 | 47026313 | ID=MS.gene073800 |
chr1.3 | mRNA | 47026313 | 47035513 | 47026313 | ID=MS.gene073800.t1;Parent=MS.gene073800 |
chr1.3 | exon | 47026313 | 47026643 | 47026313 | ID=MS.gene073800.t1.exon1;Parent=MS.gene073800.t1 |
chr1.3 | CDS | 47026313 | 47026643 | 47026313 | ID=cds.MS.gene073800.t1;Parent=MS.gene073800.t1 |
chr1.3 | exon | 47028594 | 47028755 | 47028594 | ID=MS.gene073800.t1.exon2;Parent=MS.gene073800.t1 |
chr1.3 | CDS | 47028594 | 47028755 | 47028594 | ID=cds.MS.gene073800.t1;Parent=MS.gene073800.t1 |
chr1.3 | exon | 47028864 | 47028997 | 47028864 | ID=MS.gene073800.t1.exon3;Parent=MS.gene073800.t1 |
chr1.3 | CDS | 47028864 | 47028997 | 47028864 | ID=cds.MS.gene073800.t1;Parent=MS.gene073800.t1 |
chr1.3 | exon | 47029306 | 47029467 | 47029306 | ID=MS.gene073800.t1.exon4;Parent=MS.gene073800.t1 |
chr1.3 | CDS | 47029306 | 47029467 | 47029306 | ID=cds.MS.gene073800.t1;Parent=MS.gene073800.t1 |
chr1.3 | exon | 47031063 | 47031243 | 47031063 | ID=MS.gene073800.t1.exon5;Parent=MS.gene073800.t1 |
chr1.3 | CDS | 47031063 | 47031243 | 47031063 | ID=cds.MS.gene073800.t1;Parent=MS.gene073800.t1 |
chr1.3 | exon | 47032178 | 47032544 | 47032178 | ID=MS.gene073800.t1.exon6;Parent=MS.gene073800.t1 |
chr1.3 | CDS | 47032178 | 47032544 | 47032178 | ID=cds.MS.gene073800.t1;Parent=MS.gene073800.t1 |
chr1.3 | exon | 47032637 | 47033441 | 47032637 | ID=MS.gene073800.t1.exon7;Parent=MS.gene073800.t1 |
chr1.3 | CDS | 47032637 | 47033441 | 47032637 | ID=cds.MS.gene073800.t1;Parent=MS.gene073800.t1 |
chr1.3 | exon | 47034994 | 47035081 | 47034994 | ID=MS.gene073800.t1.exon8;Parent=MS.gene073800.t1 |
chr1.3 | CDS | 47034994 | 47035081 | 47034994 | ID=cds.MS.gene073800.t1;Parent=MS.gene073800.t1 |
chr1.3 | exon | 47035404 | 47035513 | 47035404 | ID=MS.gene073800.t1.exon9;Parent=MS.gene073800.t1 |
chr1.3 | CDS | 47035404 | 47035513 | 47035404 | ID=cds.MS.gene073800.t1;Parent=MS.gene073800.t1 |
Gene Sequence |
Protein sequence |