AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene073814

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene073814.t1 MTR_1g067370 99.317 439 3 0 1 439 1 439 0.0 890
MS.gene073814.t1 MTR_7g100360 82.688 439 64 3 13 439 6 444 0.0 680
MS.gene073814.t1 MTR_3g080830 54.545 418 182 5 26 439 24 437 2.63e-158 454
MS.gene073814.t1 MTR_1g025450 55.034 149 66 1 26 173 301 449 1.43e-38 147
MS.gene073814.t1 MTR_1g061930 39.669 121 70 3 321 438 1 121 2.75e-21 90.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene073814.t1 AT5G18520 76.244 442 100 3 1 439 1 440 0.0 689
MS.gene073814.t1 AT3G09570 78.199 422 89 2 21 439 18 439 0.0 662
MS.gene073814.t1 AT5G02630 63.592 412 145 3 24 433 20 428 0.0 533
MS.gene073814.t1 AT5G42090 54.808 416 185 2 27 439 24 439 2.24e-164 470

Find 111 sgRNAs with CRISPR-Local

Find 135 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATGATTGTTATTCCTCTTC+AGG 0.246602 1.3:-47188935 MS.gene073814:CDS
TGTTATTCCTCTTCAGGTTT+TGG 0.265822 1.3:-47188929 MS.gene073814:CDS
GTAACCCAATCCTTGATAAA+AGG 0.306429 1.3:+47188871 None:intergenic
ATGATCCTCTTAGAGAAATT+CGG 0.313606 1.3:-47189660 MS.gene073814:CDS
GCAACACGACACGGATAAAC+TGG 0.334981 1.3:+47189037 None:intergenic
AATTTAGCTTCCGTTGTAAT+CGG 0.341534 1.3:-47188904 MS.gene073814:CDS
TTTGATCTCAGCCGTTGATT+GGG 0.345915 1.3:+47189713 None:intergenic
ATTTGATCTCAGCCGTTGAT+TGG 0.359823 1.3:+47189712 None:intergenic
GACGGTGGTGATCACCGTTT+TGG 0.361569 1.3:+47189773 None:intergenic
AACTCATTCGGAGAAGTTAC+AGG 0.371787 1.3:+47189396 None:intergenic
GGATTGGGTTACTTGGAATC+AGG 0.378170 1.3:-47188860 MS.gene073814:CDS
TCCGTTGTAATCGGCGAAAC+TGG 0.378237 1.3:-47188895 MS.gene073814:CDS
TTATCAAGGATTGGGTTACT+TGG 0.387701 1.3:-47188867 MS.gene073814:CDS
TGATCCTCTTAGAGAAATTC+GGG 0.400373 1.3:-47189659 MS.gene073814:CDS
GAAGCGATTCTTCGCTTAAG+AGG 0.412419 1.3:+47189544 None:intergenic
GCCATGGAAACGGAGGTTTC+CGG 0.427556 1.3:+47189348 None:intergenic
GTCATTGTATTGATCGGAAC+TGG 0.430766 1.3:-47189006 MS.gene073814:CDS
CTCTTCTCCGTCGTGTACTT+CGG 0.437135 1.3:-47189240 MS.gene073814:CDS
AAGCTGCGGAGGTTGCTCTC+AGG 0.452635 1.3:-47188501 MS.gene073814:CDS
CCATTACTGCTTATAAGTAT+AGG 0.453867 1.3:-47188639 MS.gene073814:CDS
AGACGGAGGAAACGGCGATC+TGG 0.455414 1.3:+47189616 None:intergenic
AGCGACGGAGACGGAGGAAA+CGG 0.456624 1.3:+47189608 None:intergenic
GAGGATCATGGGTCGGGTAT+CGG 0.458332 1.3:+47189674 None:intergenic
GATTTAATCGACCATACAAT+AGG 0.463888 1.3:+47188793 None:intergenic
TATGGTCGATTAAATCGCTT+AGG 0.480587 1.3:-47188786 MS.gene073814:CDS
GATCTGGATGTGGCCGGTGT+GGG 0.484944 1.3:+47189632 None:intergenic
AAGAAGAGACTGAACTCATT+CGG 0.487216 1.3:+47189384 None:intergenic
CTCTAAGAGGATCATGGGTC+GGG 0.488515 1.3:+47189668 None:intergenic
ATAACAAACGCTCCGTTCAC+CGG 0.489572 1.3:-47189185 MS.gene073814:CDS
TTGATCTCAGCCGTTGATTG+GGG 0.493890 1.3:+47189714 None:intergenic
TTTGCAAGAAAGGGAGAAGA+AGG 0.498982 1.3:-47188962 MS.gene073814:CDS
GAATTTCTCTAAGAGGATCA+TGG 0.499199 1.3:+47189662 None:intergenic
AGCTGCGGAGGTTGCTCTCA+GGG 0.500321 1.3:-47188500 MS.gene073814:CDS
ATCCCATCCATGTGGAGTAC+CGG 0.501308 1.3:+47189077 None:intergenic
CCTATACTTATAAGCAGTAA+TGG 0.502591 1.3:+47188639 None:intergenic
TTCACCGTCATTGTATTGAT+CGG 0.507639 1.3:-47189012 MS.gene073814:CDS
GGTTAGCAATCTTGCTGAGG+AGG 0.512540 1.3:-47188614 MS.gene073814:CDS
GAATCGAGAACGCAGAAGCT+AGG 0.512869 1.3:+47189492 None:intergenic
AATCCGAGACGAGATGGATC+GGG 0.515601 1.3:+47189570 None:intergenic
CGGTTAAACGCCGCAGTTGG+AGG 0.515631 1.3:+47189426 None:intergenic
GGTACGAACCGCCATGGAAA+CGG 0.516857 1.3:+47189338 None:intergenic
GAATCCGAGACGAGATGGAT+CGG 0.518346 1.3:+47189569 None:intergenic
CCGCCATGAGGAGATGGATC+CGG 0.520442 1.3:+47189166 None:intergenic
GAACGGTTAAACGCCGCAGT+TGG 0.520553 1.3:+47189423 None:intergenic
CGATCTGGATGTGGCCGGTG+TGG 0.527010 1.3:+47189631 None:intergenic
TTGTGTTGCAGCGGCAGCGA+CGG 0.528585 1.3:+47189593 None:intergenic
ACCGGAAACCTCCGTTTCCA+TGG 0.528671 1.3:-47189349 MS.gene073814:CDS
TCACCGGTACTCCACATGGA+TGG 0.539403 1.3:-47189080 MS.gene073814:CDS
AGGAAGAATCCGAGACGAGA+TGG 0.541758 1.3:+47189564 None:intergenic
TCTCTAAGAGGATCATGGGT+CGG 0.545583 1.3:+47189667 None:intergenic
AGGAAACGGCGATCTGGATG+TGG 0.546544 1.3:+47189622 None:intergenic
TCTTTCGCCGCCTCCAACTG+CGG 0.547349 1.3:-47189436 MS.gene073814:CDS
GTCCGTGATTATCTTTCCGC+CGG 0.554079 1.3:-47189291 MS.gene073814:CDS
GAAGTGCCGCCATGAGGAGA+TGG 0.555399 1.3:+47189160 None:intergenic
TTAAACGCCGCAGTTGGAGG+CGG 0.556868 1.3:+47189429 None:intergenic
TGAACCCGAATTTCTCTAAG+AGG 0.557990 1.3:+47189655 None:intergenic
GGCATCGAGGTTGAAAAGCT+CGG 0.563320 1.3:+47189317 None:intergenic
ATGGTCGATTAAATCGCTTA+GGG 0.564486 1.3:-47188785 MS.gene073814:CDS
CACCGGTACTCCACATGGAT+GGG 0.565762 1.3:-47189079 MS.gene073814:CDS
AAATTCGCCAAAACCTGAAG+AGG 0.566176 1.3:+47188922 None:intergenic
AAATACTCATTCTTCTCCAC+CGG 0.566222 1.3:+47188547 None:intergenic
TTACTGCTTATAAGTATAGG+TGG 0.566517 1.3:-47188636 MS.gene073814:CDS
AAACATTATGTCAAGGTCAC+CGG 0.568178 1.3:-47189096 MS.gene073814:CDS
CTTGACATAATGTTTATCCT+CGG 0.571094 1.3:+47189104 None:intergenic
CGGTGAAAAGCAACACGACA+CGG 0.571831 1.3:+47189028 None:intergenic
AATCGAGAACGCAGAAGCTA+GGG 0.571969 1.3:+47189493 None:intergenic
GGAAAGATAATCACGGACTC+CGG 0.572809 1.3:+47189296 None:intergenic
GAGGAGATGGATCCGGTGAA+CGG 0.573260 1.3:+47189173 None:intergenic
GGAGGAAGAAGAAGCTGCGG+AGG 0.577819 1.3:-47188512 MS.gene073814:CDS
AGACGGTAACTGAGTTTGAC+CGG 0.579031 1.3:+47189272 None:intergenic
TAACTTGATTTGCGCCGCCG+AGG 0.580116 1.3:-47189121 MS.gene073814:CDS
AATTTCTCTAAGAGGATCAT+GGG 0.580478 1.3:+47189663 None:intergenic
TCACCGGATCCATCTCCTCA+TGG 0.581328 1.3:-47189169 MS.gene073814:CDS
AGACCGATGGAAAAGCTGCT+AGG 0.583599 1.3:-47188753 MS.gene073814:CDS
GTTAGCAATCTTGCTGAGGA+GGG 0.583606 1.3:-47188613 MS.gene073814:CDS
TTGGAGGCGGCGAAAGATCA+CGG 0.584848 1.3:+47189442 None:intergenic
ACCAGTTTCGCCGATTACAA+CGG 0.586450 1.3:+47188894 None:intergenic
CTTCTTCGCTAACTGTGCAC+CGG 0.590271 1.3:-47189367 MS.gene073814:CDS
GATCATGGGTCGGGTATCGG+AGG 0.594584 1.3:+47189677 None:intergenic
AAGCTCGGTACGAACCGCCA+TGG 0.596283 1.3:+47189332 None:intergenic
AACGGCGATCTGGATGTGGC+CGG 0.598066 1.3:+47189626 None:intergenic
TACTGCTTATAAGTATAGGT+GGG 0.603318 1.3:-47188635 MS.gene073814:CDS
GGTATCGGAGGTTATTGTGA+GGG 0.605524 1.3:+47189689 None:intergenic
GAGAAGTTACAGGGTAAGAA+CGG 0.609100 1.3:+47189406 None:intergenic
AAGGTCACCGGTACTCCACA+TGG 0.613539 1.3:-47189084 MS.gene073814:CDS
TGATCTCAGCCGTTGATTGG+GGG 0.614677 1.3:+47189715 None:intergenic
TTGTATTGATCGGAACTGGA+TGG 0.615956 1.3:-47189002 MS.gene073814:CDS
TGCAGCGGCAGCGACGGAGA+CGG 0.619834 1.3:+47189599 None:intergenic
AGCGGCAGCGACGGAGACGG+AGG 0.621423 1.3:+47189602 None:intergenic
CGAGGATAAACATTATGTCA+AGG 0.627926 1.3:-47189103 MS.gene073814:CDS
TGAGGAGGAAGAAGAAGCTG+CGG 0.630700 1.3:-47188515 MS.gene073814:CDS
CAACCCGATCCATCTCGTCT+CGG 0.633761 1.3:-47189573 MS.gene073814:CDS
AGGGAAACCTCAAAGACCGA+TGG 0.641237 1.3:-47188766 MS.gene073814:CDS
TGGATCGGGTTGTGTTGCAG+CGG 0.642391 1.3:+47189584 None:intergenic
GACATAATGTTTATCCTCGG+CGG 0.647292 1.3:+47189107 None:intergenic
ACTCATTCGGAGAAGTTACA+GGG 0.651029 1.3:+47189397 None:intergenic
TCAACAGAAGTGCCGCCATG+AGG 0.664003 1.3:+47189154 None:intergenic
AATCACGGACTCCGGCATCG+AGG 0.665196 1.3:+47189304 None:intergenic
GGGTATCGGAGGTTATTGTG+AGG 0.669465 1.3:+47189688 None:intergenic
GTGGGTTAGCAATCTTGCTG+AGG 0.670293 1.3:-47188617 MS.gene073814:CDS
GGAAACCTCCGTTTCCATGG+CGG 0.672147 1.3:-47189346 MS.gene073814:CDS
AGTTCCGATCAATACAATGA+CGG 0.676682 1.3:+47189008 None:intergenic
AAATTCGGGTTCACCCACAC+CGG 0.680372 1.3:-47189645 MS.gene073814:CDS
AAGAGAACATCCCATCCATG+TGG 0.690008 1.3:+47189069 None:intergenic
GACCGGCGGAAAGATAATCA+CGG 0.713828 1.3:+47189289 None:intergenic
ACGAACCGCCATGGAAACGG+AGG 0.722339 1.3:+47189341 None:intergenic
GAGAAAACCGAAGTACACGA+CGG 0.734771 1.3:+47189233 None:intergenic
CCGGATCCATCTCCTCATGG+CGG 0.735489 1.3:-47189166 MS.gene073814:CDS
GATTGTGATGAGTGAAACGA+CGG 0.759491 1.3:+47189755 None:intergenic
CGGTAACTGAGTTTGACCGG+CGG 0.781047 1.3:+47189275 None:intergenic
TGTGATGAGTGAAACGACGG+TGG 0.807665 1.3:+47189758 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CAATCATTTTTCCTATTGTA+TGG - chr1.3:47189453-47189472 MS.gene073814:CDS 25.0%
!!! CAGTTTTACATTGTTGTTAT+CGG - chr1.3:47189554-47189573 MS.gene073814:CDS 25.0%
ATGATCCTCTTAGAGAAATT+CGG - chr1.3:47188597-47188616 MS.gene073814:CDS 30.0%
CCATTACTGCTTATAAGTAT+AGG - chr1.3:47189618-47189637 MS.gene073814:CDS 30.0%
CCTATACTTATAAGCAGTAA+TGG + chr1.3:47189621-47189640 None:intergenic 30.0%
CTTGACATAATGTTTATCCT+CGG + chr1.3:47189156-47189175 None:intergenic 30.0%
GATTTAATCGACCATACAAT+AGG + chr1.3:47189467-47189486 None:intergenic 30.0%
TACTGCTTATAAGTATAGGT+GGG - chr1.3:47189622-47189641 MS.gene073814:CDS 30.0%
TTACTGCTTATAAGTATAGG+TGG - chr1.3:47189621-47189640 MS.gene073814:CDS 30.0%
! AATTTAGCTTCCGTTGTAAT+CGG - chr1.3:47189353-47189372 MS.gene073814:CDS 30.0%
! AATTTCTCTAAGAGGATCAT+GGG + chr1.3:47188597-47188616 None:intergenic 30.0%
! CATGTTTTACATGTTTATGC+CGG - chr1.3:47189691-47189710 MS.gene073814:CDS 30.0%
! TATGATTGTTATTCCTCTTC+AGG - chr1.3:47189322-47189341 MS.gene073814:CDS 30.0%
AAACATTATGTCAAGGTCAC+CGG - chr1.3:47189161-47189180 MS.gene073814:CDS 35.0%
AAATACTCATTCTTCTCCAC+CGG + chr1.3:47189713-47189732 None:intergenic 35.0%
AAGAAGAGACTGAACTCATT+CGG + chr1.3:47188876-47188895 None:intergenic 35.0%
AGTTCCGATCAATACAATGA+CGG + chr1.3:47189252-47189271 None:intergenic 35.0%
ATGGTCGATTAAATCGCTTA+GGG - chr1.3:47189472-47189491 MS.gene073814:CDS 35.0%
CGAGGATAAACATTATGTCA+AGG - chr1.3:47189154-47189173 MS.gene073814:CDS 35.0%
GAGAAGAGAAAAAACAGAGA+CGG + chr1.3:47189005-47189024 None:intergenic 35.0%
GTAACCCAATCCTTGATAAA+AGG + chr1.3:47189389-47189408 None:intergenic 35.0%
TATGGTCGATTAAATCGCTT+AGG - chr1.3:47189471-47189490 MS.gene073814:CDS 35.0%
TGATCCTCTTAGAGAAATTC+GGG - chr1.3:47188598-47188617 MS.gene073814:CDS 35.0%
TTATCAAGGATTGGGTTACT+TGG - chr1.3:47189390-47189409 MS.gene073814:CDS 35.0%
TTCTCCCTTTCTTGCAAAAA+CGG + chr1.3:47189293-47189312 None:intergenic 35.0%
! GAATTTCTCTAAGAGGATCA+TGG + chr1.3:47188598-47188617 None:intergenic 35.0%
! TGAGTATTTTGTGCTTGATG+AGG - chr1.3:47189724-47189743 MS.gene073814:CDS 35.0%
! TGGTCCTTTTATCAAGGATT+GGG - chr1.3:47189382-47189401 MS.gene073814:CDS 35.0%
! TTCACCGTCATTGTATTGAT+CGG - chr1.3:47189245-47189264 MS.gene073814:CDS 35.0%
!! TCGCGAAGTTAACACTTTTT+AGG - chr1.3:47189531-47189550 MS.gene073814:CDS 35.0%
!! TGTTATTCCTCTTCAGGTTT+TGG - chr1.3:47189328-47189347 MS.gene073814:CDS 35.0%
AAATTCGCCAAAACCTGAAG+AGG + chr1.3:47189338-47189357 None:intergenic 40.0%
AACTCATTCGGAGAAGTTAC+AGG + chr1.3:47188864-47188883 None:intergenic 40.0%
ACTCATTCGGAGAAGTTACA+GGG + chr1.3:47188863-47188882 None:intergenic 40.0%
ATTTGATCTCAGCCGTTGAT+TGG + chr1.3:47188548-47188567 None:intergenic 40.0%
CATAACAATCCCCCAATCAA+CGG - chr1.3:47188533-47188552 MS.gene073814:CDS 40.0%
GACATAATGTTTATCCTCGG+CGG + chr1.3:47189153-47189172 None:intergenic 40.0%
GAGAAGTTACAGGGTAAGAA+CGG + chr1.3:47188854-47188873 None:intergenic 40.0%
GATTGTGATGAGTGAAACGA+CGG + chr1.3:47188505-47188524 None:intergenic 40.0%
TGAACCCGAATTTCTCTAAG+AGG + chr1.3:47188605-47188624 None:intergenic 40.0%
TTGATTGGGGGATTGTTATG+AGG + chr1.3:47188533-47188552 None:intergenic 40.0%
TTTGCAAGAAAGGGAGAAGA+AGG - chr1.3:47189295-47189314 MS.gene073814:CDS 40.0%
! ATTCCTAGCAGCTTTTCCAT+CGG + chr1.3:47189510-47189529 None:intergenic 40.0%
! CGAAACTGGTCCTTTTATCA+AGG - chr1.3:47189376-47189395 MS.gene073814:CDS 40.0%
! CTGGTCCTTTTATCAAGGAT+TGG - chr1.3:47189381-47189400 MS.gene073814:CDS 40.0%
! GTATTTTGTGCTTGATGAGG+AGG - chr1.3:47189727-47189746 MS.gene073814:CDS 40.0%
! GTCATTGTATTGATCGGAAC+TGG - chr1.3:47189251-47189270 MS.gene073814:CDS 40.0%
! GTTTTACATGTTTATGCCGG+TGG - chr1.3:47189694-47189713 MS.gene073814:CDS 40.0%
! TTGTATTGATCGGAACTGGA+TGG - chr1.3:47189255-47189274 MS.gene073814:CDS 40.0%
! TTTGATCTCAGCCGTTGATT+GGG + chr1.3:47188547-47188566 None:intergenic 40.0%
!!! GAAGCCGTTTTTGCAAGAAA+GGG - chr1.3:47189286-47189305 MS.gene073814:CDS 40.0%
!!! TGAAGCCGTTTTTGCAAGAA+AGG - chr1.3:47189285-47189304 MS.gene073814:CDS 40.0%
AAGAGAACATCCCATCCATG+TGG + chr1.3:47189191-47189210 None:intergenic 45.0%
AATCGAGAACGCAGAAGCTA+GGG + chr1.3:47188767-47188786 None:intergenic 45.0%
AGACGGTAACTGAGTTTGAC+CGG + chr1.3:47188988-47189007 None:intergenic 45.0%
ATAACAAACGCTCCGTTCAC+CGG - chr1.3:47189072-47189091 MS.gene073814:CDS 45.0%
GAAGCGATTCTTCGCTTAAG+AGG + chr1.3:47188716-47188735 None:intergenic 45.0%
GAGAAAACCGAAGTACACGA+CGG + chr1.3:47189027-47189046 None:intergenic 45.0%
GGAAAGATAATCACGGACTC+CGG + chr1.3:47188964-47188983 None:intergenic 45.0%
GGATTGGGTTACTTGGAATC+AGG - chr1.3:47189397-47189416 MS.gene073814:CDS 45.0%
GTTAGCAATCTTGCTGAGGA+GGG - chr1.3:47189644-47189663 MS.gene073814:CDS 45.0%
! ACCAGTTTCGCCGATTACAA+CGG + chr1.3:47189366-47189385 None:intergenic 45.0%
! AGCTTTTCCATCGGTCTTTG+AGG + chr1.3:47189501-47189520 None:intergenic 45.0%
! GGTATCGGAGGTTATTGTGA+GGG + chr1.3:47188571-47188590 None:intergenic 45.0%
! GTCGTGTACTTCGGTTTTCT+CGG - chr1.3:47189026-47189045 MS.gene073814:CDS 45.0%
! TCTCTAAGAGGATCATGGGT+CGG + chr1.3:47188593-47188612 None:intergenic 45.0%
! TTGATCTCAGCCGTTGATTG+GGG + chr1.3:47188546-47188565 None:intergenic 45.0%
!!! ACTTCGGTTTTCTCGGTGTT+TGG - chr1.3:47189033-47189052 MS.gene073814:CDS 45.0%
!!! GGTTTTGTTGGATCTCGATG+AGG + chr1.3:47188746-47188765 None:intergenic 45.0%
AATCCGAGACGAGATGGATC+GGG + chr1.3:47188690-47188709 None:intergenic 50.0%
AGACCGATGGAAAAGCTGCT+AGG - chr1.3:47189504-47189523 MS.gene073814:CDS 50.0%
AGGAAGAATCCGAGACGAGA+TGG + chr1.3:47188696-47188715 None:intergenic 50.0%
AGGGAAACCTCAAAGACCGA+TGG - chr1.3:47189491-47189510 MS.gene073814:CDS 50.0%
ATCCCATCCATGTGGAGTAC+CGG + chr1.3:47189183-47189202 None:intergenic 50.0%
CGGTGAAAAGCAACACGACA+CGG + chr1.3:47189232-47189251 None:intergenic 50.0%
CTCTTCTCCGTCGTGTACTT+CGG - chr1.3:47189017-47189036 MS.gene073814:CDS 50.0%
CTTCTTCGCTAACTGTGCAC+CGG - chr1.3:47188890-47188909 MS.gene073814:CDS 50.0%
GAATCCGAGACGAGATGGAT+CGG + chr1.3:47188691-47188710 None:intergenic 50.0%
GAATCGAGAACGCAGAAGCT+AGG + chr1.3:47188768-47188787 None:intergenic 50.0%
GACCGGCGGAAAGATAATCA+CGG + chr1.3:47188971-47188990 None:intergenic 50.0%
GCAACACGACACGGATAAAC+TGG + chr1.3:47189223-47189242 None:intergenic 50.0%
GGGGGATTGTTATGAGGATG+AGG + chr1.3:47188527-47188546 None:intergenic 50.0%
GGTTAGCAATCTTGCTGAGG+AGG - chr1.3:47189643-47189662 MS.gene073814:CDS 50.0%
GTCCGTGATTATCTTTCCGC+CGG - chr1.3:47188966-47188985 MS.gene073814:CDS 50.0%
TCCGTTGTAATCGGCGAAAC+TGG - chr1.3:47189362-47189381 MS.gene073814:CDS 50.0%
TGAGGAGGAAGAAGAAGCTG+CGG - chr1.3:47189742-47189761 MS.gene073814:CDS 50.0%
TGTGATGAGTGAAACGACGG+TGG + chr1.3:47188502-47188521 None:intergenic 50.0%
! AAATTCGGGTTCACCCACAC+CGG - chr1.3:47188612-47188631 MS.gene073814:CDS 50.0%
! CTCTAAGAGGATCATGGGTC+GGG + chr1.3:47188592-47188611 None:intergenic 50.0%
! GAGCTTTTCAACCTCGATGC+CGG - chr1.3:47188942-47188961 MS.gene073814:CDS 50.0%
! GGCATCGAGGTTGAAAAGCT+CGG + chr1.3:47188943-47188962 None:intergenic 50.0%
! TGATCTCAGCCGTTGATTGG+GGG + chr1.3:47188545-47188564 None:intergenic 50.0%
!! CGCAGAAGCTAGGGTTTTGT+TGG + chr1.3:47188758-47188777 None:intergenic 50.0%
!! GGGTATCGGAGGTTATTGTG+AGG + chr1.3:47188572-47188591 None:intergenic 50.0%
!! GTGGGTTAGCAATCTTGCTG+AGG - chr1.3:47189640-47189659 MS.gene073814:CDS 50.0%
AAGGTCACCGGTACTCCACA+TGG - chr1.3:47189173-47189192 MS.gene073814:CDS 55.0%
ACCGGAAACCTCCGTTTCCA+TGG - chr1.3:47188908-47188927 MS.gene073814:CDS 55.0%
AGGAAACGGCGATCTGGATG+TGG + chr1.3:47188638-47188657 None:intergenic 55.0%
CAACCCGATCCATCTCGTCT+CGG - chr1.3:47188684-47188703 MS.gene073814:CDS 55.0%
CACCGGTACTCCACATGGAT+GGG - chr1.3:47189178-47189197 MS.gene073814:CDS 55.0%
CGGTAACTGAGTTTGACCGG+CGG + chr1.3:47188985-47189004 None:intergenic 55.0%
GAACGGTTAAACGCCGCAGT+TGG + chr1.3:47188837-47188856 None:intergenic 55.0%
GAGGAGATGGATCCGGTGAA+CGG + chr1.3:47189087-47189106 None:intergenic 55.0%
GAGGATCATGGGTCGGGTAT+CGG + chr1.3:47188586-47188605 None:intergenic 55.0%
GCCATGGAAACGGAGGTTTC+CGG + chr1.3:47188912-47188931 None:intergenic 55.0%
GGAAACCTCCGTTTCCATGG+CGG - chr1.3:47188911-47188930 MS.gene073814:CDS 55.0%
GGTACGAACCGCCATGGAAA+CGG + chr1.3:47188922-47188941 None:intergenic 55.0%
TCACCGGATCCATCTCCTCA+TGG - chr1.3:47189088-47189107 MS.gene073814:CDS 55.0%
TCACCGGTACTCCACATGGA+TGG - chr1.3:47189177-47189196 MS.gene073814:CDS 55.0%
TTAAACGCCGCAGTTGGAGG+CGG + chr1.3:47188831-47188850 None:intergenic 55.0%
TTGGAGGCGGCGAAAGATCA+CGG + chr1.3:47188818-47188837 None:intergenic 55.0%
! GACGGTGGTGATCACCGTTT+TGG + chr1.3:47188487-47188506 None:intergenic 55.0%
! TGGATCGGGTTGTGTTGCAG+CGG + chr1.3:47188676-47188695 None:intergenic 55.0%
!! TAACTTGATTTGCGCCGCCG+AGG - chr1.3:47189136-47189155 MS.gene073814:CDS 55.0%
!! TCAACAGAAGTGCCGCCATG+AGG + chr1.3:47189106-47189125 None:intergenic 55.0%
AACGGCGATCTGGATGTGGC+CGG + chr1.3:47188634-47188653 None:intergenic 60.0%
AAGCTCGGTACGAACCGCCA+TGG + chr1.3:47188928-47188947 None:intergenic 60.0%
AAGCTGCGGAGGTTGCTCTC+AGG - chr1.3:47189756-47189775 MS.gene073814:CDS 60.0%
AATCACGGACTCCGGCATCG+AGG + chr1.3:47188956-47188975 None:intergenic 60.0%
ACGAACCGCCATGGAAACGG+AGG + chr1.3:47188919-47188938 None:intergenic 60.0%
AGACGGAGGAAACGGCGATC+TGG + chr1.3:47188644-47188663 None:intergenic 60.0%
AGCGACGGAGACGGAGGAAA+CGG + chr1.3:47188652-47188671 None:intergenic 60.0%
AGCTGCGGAGGTTGCTCTCA+GGG - chr1.3:47189757-47189776 MS.gene073814:CDS 60.0%
CCGCCATGAGGAGATGGATC+CGG + chr1.3:47189094-47189113 None:intergenic 60.0%
CCGGATCCATCTCCTCATGG+CGG - chr1.3:47189091-47189110 MS.gene073814:CDS 60.0%
CGGTTAAACGCCGCAGTTGG+AGG + chr1.3:47188834-47188853 None:intergenic 60.0%
GATCTGGATGTGGCCGGTGT+GGG + chr1.3:47188628-47188647 None:intergenic 60.0%
GGAGGAAGAAGAAGCTGCGG+AGG - chr1.3:47189745-47189764 MS.gene073814:CDS 60.0%
TCTTTCGCCGCCTCCAACTG+CGG - chr1.3:47188821-47188840 MS.gene073814:CDS 60.0%
TTGTGTTGCAGCGGCAGCGA+CGG + chr1.3:47188667-47188686 None:intergenic 60.0%
!! GAAGTGCCGCCATGAGGAGA+TGG + chr1.3:47189100-47189119 None:intergenic 60.0%
!! GATCATGGGTCGGGTATCGG+AGG + chr1.3:47188583-47188602 None:intergenic 60.0%
CGATCTGGATGTGGCCGGTG+TGG + chr1.3:47188629-47188648 None:intergenic 65.0%
TGCAGCGGCAGCGACGGAGA+CGG + chr1.3:47188661-47188680 None:intergenic 70.0%
AGCGGCAGCGACGGAGACGG+AGG + chr1.3:47188658-47188677 None:intergenic 75.0%


Chromosome Type Strat End Strand Name
chr1.3 gene 47188480 47189799 47188480 ID=MS.gene073814
chr1.3 mRNA 47188480 47189799 47188480 ID=MS.gene073814.t1;Parent=MS.gene073814
chr1.3 exon 47188480 47189799 47188480 ID=MS.gene073814.t1.exon1;Parent=MS.gene073814.t1
chr1.3 CDS 47188480 47189799 47188480 ID=cds.MS.gene073814.t1;Parent=MS.gene073814.t1
Gene Sequence

>MS.gene073814

ATGGCCAAAACGGTGATCACCACCGTCGTTTCACTCATCACAATCCTCATCCTCATAACAATCCCCCAATCAACGGCTGAGATCAAATCCCTCACAATAACCTCCGATACCCGACCCATGATCCTCTTAGAGAAATTCGGGTTCACCCACACCGGCCACATCCAGATCGCCGTTTCCTCCGTCTCCGTCGCTGCCGCTGCAACACAACCCGATCCATCTCGTCTCGGATTCTTCCTCTTAAGCGAAGAATCGCTTCTACAAGTCCTCATCGAGATCCAACAAAACCCTAGCTTCTGCGTTCTCGATTCACATTACATCACGCGTTTATTCACTTTCCGTGATCTTTCGCCGCCTCCAACTGCGGCGTTTAACCGTTCTTACCCTGTAACTTCTCCGAATGAGTTCAGTCTCTTCTTCGCTAACTGTGCACCGGAAACCTCCGTTTCCATGGCGGTTCGTACCGAGCTTTTCAACCTCGATGCCGGAGTCCGTGATTATCTTTCCGCCGGTCAAACTCAGTTACCGTCTCTGTTTTTTCTCTTCTCCGTCGTGTACTTCGGTTTTCTCGGTGTTTGGTTCTATGTTTGTTACAATAACAAACGCTCCGTTCACCGGATCCATCTCCTCATGGCGGCACTTCTGTTGATGAAAGCTCTTAACTTGATTTGCGCCGCCGAGGATAAACATTATGTCAAGGTCACCGGTACTCCACATGGATGGGATGTTCTCTTTTACATTTTCCAGTTTATCCGTGTCGTGTTGCTTTTCACCGTCATTGTATTGATCGGAACTGGATGGTCGTTTTTGAAGCCGTTTTTGCAAGAAAGGGAGAAGAAGGTGCTTATGATTGTTATTCCTCTTCAGGTTTTGGCGAATTTAGCTTCCGTTGTAATCGGCGAAACTGGTCCTTTTATCAAGGATTGGGTTACTTGGAATCAGGTTTTCTTGCTTGTTGATATCATTTGTTGTTGTGCAATCATTTTTCCTATTGTATGGTCGATTAAATCGCTTAGGGAAACCTCAAAGACCGATGGAAAAGCTGCTAGGAATCTCGCGAAGTTAACACTTTTTAGGCAGTTTTACATTGTTGTTATCGGCTATCTTTACTTCACACGCATTGTTGTTTTTGCTCTCAAGACCATTACTGCTTATAAGTATAGGTGGGTTAGCAATCTTGCTGAGGAGGGTGCTAGTCTTGCATTTTACATTGTCATGTTTTACATGTTTATGCCGGTGGAGAAGAATGAGTATTTTGTGCTTGATGAGGAGGAAGAAGAAGCTGCGGAGGTTGCTCTCAGGGAAGAAGAGTTTGAGCTTTGA
Protein sequence

>MS.gene073814.t1

MAKTVITTVVSLITILILITIPQSTAEIKSLTITSDTRPMILLEKFGFTHTGHIQIAVSSVSVAAAATQPDPSRLGFFLLSEESLLQVLIEIQQNPSFCVLDSHYITRLFTFRDLSPPPTAAFNRSYPVTSPNEFSLFFANCAPETSVSMAVRTELFNLDAGVRDYLSAGQTQLPSLFFLFSVVYFGFLGVWFYVCYNNKRSVHRIHLLMAALLLMKALNLICAAEDKHYVKVTGTPHGWDVLFYIFQFIRVVLLFTVIVLIGTGWSFLKPFLQEREKKVLMIVIPLQVLANLASVVIGETGPFIKDWVTWNQVFLLVDIICCCAIIFPIVWSIKSLRETSKTDGKAARNLAKLTLFRQFYIVVIGYLYFTRIVVFALKTITAYKYRWVSNLAEEGASLAFYIVMFYMFMPVEKNEYFVLDEEEEEAAEVALREEEFEL