AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene073846

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene073846.t1 MTR_1g068730 98.519 135 2 0 28 162 82 216 2.84e-96 277
MS.gene073846.t1 MTR_1g068740 97.778 135 3 0 28 162 82 216 1.06e-95 276
MS.gene073846.t1 MTR_1g115325 86.466 133 18 0 29 161 83 215 6.96e-84 246
MS.gene073846.t1 MTR_4g063160 81.690 142 25 1 20 161 76 216 1.15e-83 245
MS.gene073846.t1 MTR_7g100020 91.045 134 12 0 29 162 83 216 3.05e-83 244
MS.gene073846.t1 MTR_2g096550 76.296 135 28 3 28 161 82 213 1.97e-68 206
MS.gene073846.t1 MTR_7g081700 51.111 135 57 4 29 162 76 202 5.94e-38 129
MS.gene073846.t1 MTR_4g099470 46.324 136 62 4 29 162 52 178 2.33e-36 124
MS.gene073846.t1 MTR_1g068740 95.000 60 3 0 28 87 82 141 9.07e-36 123
MS.gene073846.t1 MTR_8g006970 49.265 136 59 4 29 162 90 217 3.54e-35 122
MS.gene073846.t1 MTR_1g068730 94.915 59 3 0 29 87 83 141 2.03e-34 119
MS.gene073846.t1 MTR_2g005500 43.382 136 65 4 29 161 77 203 7.12e-33 115
MS.gene073846.t1 MTR_8g006970 55.102 98 43 1 29 126 76 172 1.62e-31 112
MS.gene073846.t1 MTR_1g062760 42.754 138 65 6 29 160 81 210 3.41e-25 96.3
MS.gene073846.t1 MTR_2g027660 37.410 139 78 4 29 160 74 210 6.75e-25 95.5
MS.gene073846.t1 MTR_4g064897 35.507 138 83 3 29 162 80 215 1.12e-24 95.1
MS.gene073846.t1 MTR_6g021790 36.957 138 80 3 29 160 74 210 1.27e-24 95.1
MS.gene073846.t1 MTR_1g078200 35.915 142 80 2 29 160 82 222 1.02e-23 92.8
MS.gene073846.t1 MTR_3g086980 44.211 95 52 1 29 123 84 177 1.47e-23 92.4
MS.gene073846.t1 MTR_8g031660 35.507 138 77 3 29 160 74 205 2.28e-23 91.7
MS.gene073846.t1 MTR_3g069510 37.857 140 74 4 29 160 80 214 3.88e-23 91.3
MS.gene073846.t1 MTR_8g103550 44.118 102 52 2 30 131 78 174 4.72e-23 90.5
MS.gene073846.t1 MTR_7g103070 40.146 137 70 5 29 160 28 157 7.30e-23 89.0
MS.gene073846.t1 MTR_3g064390 35.606 132 73 4 30 160 79 199 1.17e-22 89.7
MS.gene073846.t1 MTR_2g005510 35.252 139 84 2 29 162 83 220 2.01e-22 89.4
MS.gene073846.t1 MTR_7g103070 40.146 137 70 5 29 160 84 213 3.39e-22 88.6
MS.gene073846.t1 MTR_8g089985 40.909 110 59 2 29 133 85 193 3.54e-22 89.0
MS.gene073846.t1 MTR_5g076590 34.091 132 75 4 30 160 79 199 1.27e-21 87.0
MS.gene073846.t1 MTR_2g014990 37.324 142 76 4 29 162 81 217 1.46e-21 87.0
MS.gene073846.t1 MTR_1g090717 36.076 158 91 6 5 160 62 211 2.37e-21 86.7
MS.gene073846.t1 MTR_4g079350 38.462 143 73 5 29 162 81 217 2.88e-21 86.3
MS.gene073846.t1 MTR_7g051940 37.037 135 81 3 29 160 81 214 2.91e-21 86.3
MS.gene073846.t1 MTR_8g036220 36.296 135 80 3 29 159 84 216 1.39e-20 84.7
MS.gene073846.t1 MTR_8g027220 41.053 95 55 1 29 123 94 187 1.53e-20 84.7
MS.gene073846.t1 MTR_8g031680 35.971 139 79 5 29 160 74 209 1.70e-20 84.3
MS.gene073846.t1 MTR_1g052475 33.333 144 82 4 29 161 83 223 2.59e-20 84.0
MS.gene073846.t1 MTR_2g102060 38.655 119 67 3 30 147 79 192 2.71e-20 83.6
MS.gene073846.t1 MTR_6g079550 31.618 136 88 2 29 160 80 214 3.18e-20 83.6
MS.gene073846.t1 MTR_7g405790 34.058 138 84 4 29 160 83 219 3.36e-20 83.6
MS.gene073846.t1 MTR_8g031870 40.625 96 56 1 29 124 74 168 3.98e-20 82.8
MS.gene073846.t1 MTR_4g088090 36.364 143 76 5 29 162 81 217 5.67e-20 82.8
MS.gene073846.t1 MTR_2g090865 36.429 140 79 4 29 162 79 214 1.91e-19 81.6
MS.gene073846.t1 MTR_1g094220 40.625 96 56 1 30 125 101 195 3.06e-19 80.5
MS.gene073846.t1 MTR_2g075950 42.105 95 54 1 29 123 81 174 4.67e-19 80.5
MS.gene073846.t1 MTR_2g083860 41.053 95 55 1 29 123 81 174 5.51e-19 80.5
MS.gene073846.t1 MTR_0262s0050 40.000 95 56 1 29 123 83 176 2.60e-18 78.6
MS.gene073846.t1 MTR_1g029450 37.226 137 74 6 29 160 84 213 3.21e-18 78.2
MS.gene073846.t1 MTR_2g005500 37.273 110 57 4 55 161 63 163 4.80e-18 76.6
MS.gene073846.t1 MTR_1g094220 42.529 87 49 1 30 116 101 186 4.88e-18 77.8
MS.gene073846.t1 MTR_8g093740 44.444 90 47 3 29 116 47 135 4.93e-18 77.0
MS.gene073846.t1 MTR_1g094220 42.529 87 49 1 30 116 101 186 5.84e-18 77.4
MS.gene073846.t1 MTR_1g094220 42.529 87 49 1 30 116 101 186 8.69e-18 77.4
MS.gene073846.t1 MTR_8g093740 44.444 90 47 3 29 116 80 168 1.80e-17 76.3
MS.gene073846.t1 MTR_8g031830 40.230 87 51 1 29 115 74 159 3.40e-17 75.1
MS.gene073846.t1 MTR_3g096350 36.496 137 74 6 29 160 79 207 3.84e-17 75.5
MS.gene073846.t1 MTR_4g069850 39.683 126 66 6 28 144 75 199 8.20e-16 71.6
MS.gene073846.t1 MTR_8g107070 40.000 95 56 1 29 123 82 175 1.25e-15 72.4
MS.gene073846.t1 MTR_8g090215 40.217 92 54 1 29 120 77 167 1.82e-15 70.9
MS.gene073846.t1 MTR_1g059590 44.944 89 45 2 37 125 467 551 1.82e-14 70.1
MS.gene073846.t1 MTR_1g059590 44.944 89 45 2 37 125 500 584 1.84e-14 70.1
MS.gene073846.t1 MTR_5g013900 34.091 132 84 3 29 160 77 205 8.19e-14 66.6
MS.gene073846.t1 MTR_3g087160 32.824 131 85 2 29 159 77 204 9.33e-14 66.2
MS.gene073846.t1 MTR_4g098950 36.957 92 57 1 29 120 77 167 4.18e-13 64.7
MS.gene073846.t1 MTR_7g117910 30.657 137 77 4 29 159 88 212 6.46e-13 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene073846.t1 AT3G53610 83.704 135 22 0 28 162 82 216 3.84e-85 249
MS.gene073846.t1 AT3G53610 83.704 135 22 0 28 162 82 216 3.84e-85 249
MS.gene073846.t1 AT3G53610 83.704 135 22 0 28 162 82 216 3.84e-85 249
MS.gene073846.t1 AT5G59840 84.444 135 21 0 28 162 82 216 2.52e-84 247
MS.gene073846.t1 AT3G46060 82.963 135 23 0 28 162 82 216 5.86e-84 246
MS.gene073846.t1 AT3G46060 82.963 135 23 0 28 162 82 216 5.86e-84 246
MS.gene073846.t1 AT3G46060 82.963 135 23 0 28 162 82 216 5.86e-84 246
MS.gene073846.t1 AT5G03520 78.788 132 27 1 29 160 73 203 9.09e-75 223
MS.gene073846.t1 AT5G03520 78.195 133 28 1 28 160 82 213 1.89e-74 222
MS.gene073846.t1 AT3G09900 77.612 134 29 1 28 160 82 215 1.39e-73 220
MS.gene073846.t1 AT1G02130 47.445 137 60 4 29 162 76 203 6.89e-38 129
MS.gene073846.t1 AT4G17530 47.059 136 61 4 29 162 76 202 7.87e-35 120
MS.gene073846.t1 AT5G47200 47.059 136 61 4 29 162 76 202 2.10e-34 120
MS.gene073846.t1 AT3G11730 44.526 137 64 4 29 161 76 204 1.83e-33 117
MS.gene073846.t1 AT4G17160 40.741 135 75 3 29 161 74 205 1.07e-29 107
MS.gene073846.t1 AT4G35860 40.288 139 76 3 29 161 28 165 3.73e-29 105
MS.gene073846.t1 AT4G35860 40.288 139 76 3 29 161 74 211 1.57e-28 105
MS.gene073846.t1 AT4G17170 38.129 139 79 3 29 161 74 211 8.17e-28 103
MS.gene073846.t1 AT1G09630 36.957 138 82 2 29 162 80 216 2.50e-25 97.1
MS.gene073846.t1 AT3G07410 39.416 137 77 3 29 160 80 215 3.55e-25 96.7
MS.gene073846.t1 AT2G43130 37.313 134 81 2 29 160 80 212 3.58e-25 96.7
MS.gene073846.t1 AT4G39990 39.437 142 75 4 29 162 85 223 3.96e-25 96.7
MS.gene073846.t1 AT1G01200 42.056 107 62 0 29 135 96 202 6.37e-24 94.0
MS.gene073846.t1 AT1G07410 34.783 138 83 3 29 162 80 214 1.66e-23 92.0
MS.gene073846.t1 AT1G05810 38.571 140 78 4 29 162 80 217 4.66e-23 91.3
MS.gene073846.t1 AT5G59150 43.158 95 53 1 29 123 29 122 5.27e-23 89.7
MS.gene073846.t1 AT5G65270 35.664 143 82 4 29 162 85 226 9.23e-23 90.5
MS.gene073846.t1 AT1G05810 38.571 140 78 4 29 162 126 263 1.13e-22 91.3
MS.gene073846.t1 AT1G73640 39.024 123 70 2 29 147 81 202 1.59e-22 90.1
MS.gene073846.t1 AT3G46830 34.722 144 78 3 29 162 80 217 1.93e-22 89.4
MS.gene073846.t1 AT3G46830 34.722 144 78 3 29 162 80 217 1.93e-22 89.4
MS.gene073846.t1 AT5G59150 43.158 95 53 1 29 123 80 173 2.00e-22 89.4
MS.gene073846.t1 AT4G18430 35.714 140 77 4 29 160 81 215 2.04e-22 89.4
MS.gene073846.t1 AT2G31680 45.263 95 51 1 29 123 80 173 2.08e-22 89.4
MS.gene073846.t1 AT5G47520 36.806 144 77 4 29 162 82 221 2.95e-22 89.0
MS.gene073846.t1 AT3G54840 43.617 94 52 1 30 123 69 161 5.98e-22 87.0
MS.gene073846.t1 AT4G19640 36.364 132 74 4 30 161 79 200 7.03e-22 87.8
MS.gene073846.t1 AT3G54840 42.708 96 54 1 30 125 103 197 1.04e-21 87.0
MS.gene073846.t1 AT1G18200 41.584 101 58 1 29 129 81 180 3.39e-21 86.7
MS.gene073846.t1 AT3G54840 45.977 87 46 1 30 116 103 188 4.81e-21 85.1
MS.gene073846.t1 AT3G12160 35.971 139 82 3 29 161 83 220 5.18e-21 85.9
MS.gene073846.t1 AT1G28550 36.879 141 79 4 29 162 81 218 1.96e-20 84.3
MS.gene073846.t1 AT5G60860 37.226 137 79 4 29 160 81 215 2.55e-20 84.0
MS.gene073846.t1 AT1G16920 42.105 95 54 1 29 123 81 174 4.47e-20 83.2
MS.gene073846.t1 AT5G47960 32.624 141 87 3 29 162 83 222 4.84e-20 83.2
MS.gene073846.t1 AT3G15060 37.500 144 73 5 29 162 81 217 5.18e-20 83.2
MS.gene073846.t1 AT5G03530 38.686 137 72 6 29 160 80 209 5.82e-20 82.8
MS.gene073846.t1 AT5G03530 38.686 137 72 6 29 160 80 209 5.82e-20 82.8
MS.gene073846.t1 AT5G45750 35.036 137 81 4 29 160 81 214 1.33e-19 82.0
MS.gene073846.t1 AT2G33870 35.252 139 84 3 29 162 81 218 1.91e-19 81.6
MS.gene073846.t1 AT4G18800 35.556 135 81 3 29 160 81 212 4.25e-19 80.5
MS.gene073846.t1 AT1G43890 46.667 90 45 3 29 116 80 168 4.27e-19 80.5
MS.gene073846.t1 AT1G43890 46.667 90 45 3 29 116 80 168 4.27e-19 80.5
MS.gene073846.t1 AT1G43890 46.667 90 45 3 29 116 80 168 4.27e-19 80.5
MS.gene073846.t1 AT5G45130 32.576 132 79 4 30 161 79 200 5.44e-19 80.1
MS.gene073846.t1 AT5G45130 32.576 132 79 4 30 161 87 208 6.09e-19 80.1
MS.gene073846.t1 AT1G06400 39.175 97 58 1 29 125 81 176 1.06e-17 77.0
MS.gene073846.t1 AT3G09910 39.091 110 64 3 29 136 80 188 3.03e-17 75.5
MS.gene073846.t1 AT3G09910 39.091 110 64 3 29 136 80 188 3.03e-17 75.5
MS.gene073846.t1 AT3G18820 38.400 125 70 4 28 146 75 198 1.63e-16 73.6
MS.gene073846.t1 AT3G09910 41.414 99 55 3 29 125 80 177 3.82e-16 72.8
MS.gene073846.t1 AT3G09910 41.414 99 55 3 29 125 80 177 3.82e-16 72.8
MS.gene073846.t1 AT3G09910 41.414 99 55 3 29 125 80 177 3.82e-16 72.8
MS.gene073846.t1 AT4G39890 40.860 93 53 2 29 120 77 168 2.30e-15 70.9
MS.gene073846.t1 AT5G46025 35.417 96 60 2 29 123 12 106 8.26e-15 67.0
MS.gene073846.t1 AT2G22290 33.333 132 85 2 29 160 77 205 8.75e-15 68.9
MS.gene073846.t1 AT4G09720 37.008 127 72 3 29 147 42 168 4.05e-14 66.6
MS.gene073846.t1 AT4G09720 37.008 127 72 3 29 147 42 168 4.05e-14 66.6
MS.gene073846.t1 AT4G09720 37.008 127 72 3 29 147 42 168 4.05e-14 66.6
MS.gene073846.t1 AT1G52280 41.584 101 53 3 28 122 75 175 6.26e-14 66.6
MS.gene073846.t1 AT4G09720 37.008 127 72 3 29 147 76 202 1.03e-13 66.2
MS.gene073846.t1 AT1G49300 34.058 138 79 5 28 159 75 206 1.54e-13 65.9
MS.gene073846.t1 AT1G49300 34.058 138 79 5 28 159 75 206 1.54e-13 65.9
MS.gene073846.t1 AT5G10260 38.043 92 56 1 29 120 77 167 2.00e-13 65.5
MS.gene073846.t1 AT1G22740 36.923 130 74 4 28 151 75 202 2.57e-13 65.1
MS.gene073846.t1 AT2G44610 31.818 132 88 2 29 160 77 206 1.06e-12 63.5
MS.gene073846.t1 AT3G16100 35.252 139 74 6 28 159 75 204 1.11e-12 63.5
MS.gene073846.t1 AT2G21880 33.571 140 71 4 29 151 52 186 2.00e-12 62.4
MS.gene073846.t1 AT2G21880 33.571 140 71 4 29 151 52 186 2.00e-12 62.4
MS.gene073846.t1 AT5G64990 35.514 107 68 1 29 135 75 180 2.27e-12 62.8
MS.gene073846.t1 AT5G64990 35.514 107 68 1 29 135 82 187 2.47e-12 62.8
MS.gene073846.t1 AT2G21880 33.571 140 71 4 29 151 69 203 2.55e-12 62.4
MS.gene073846.t1 AT2G21880 33.571 140 71 4 29 151 77 211 3.09e-12 62.4
MS.gene073846.t1 AT4G09720 32.609 138 74 3 29 147 76 213 5.22e-11 58.9

Find 35 sgRNAs with CRISPR-Local

Find 108 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTCAGAAGCTATGCTGTTT+TGG 0.281362 1.3:+47796454 None:intergenic
GTTGGTTAATCTTGAGTGTC+TGG 0.301047 1.3:+47794960 None:intergenic
AGGTTACCAACTTCTTGAAT+TGG 0.404842 1.3:+47796423 None:intergenic
TTGGTTAATCTTGAGTGTCT+GGG 0.416091 1.3:+47794961 None:intergenic
CCGACATGGATGAAAGCAAA+AGG 0.450345 1.3:-47795562 MS.gene073846:CDS
AATTTGCCAATTCAAGAAGT+TGG 0.452658 1.3:-47796429 MS.gene073846:intron
GCAGAGCCAACTCCCTGGTC+TGG 0.454797 1.3:+47794938 None:intergenic
AACTTCAAAGGGTCAAGCTC+TGG 0.455648 1.3:-47795426 MS.gene073846:CDS
GCTTATTACCGTGGAGCAAT+GGG 0.460469 1.3:-47795935 MS.gene073846:CDS
CAATGTCAACAAAATATTAG+TGG 0.483464 1.3:-47795594 MS.gene073846:CDS
AATGTCAACAAAATATTAGT+GGG 0.485156 1.3:-47795593 MS.gene073846:CDS
AGAGCTTGACCCTTTGAAGT+TGG 0.487525 1.3:+47795428 None:intergenic
AGCTTATTACCGTGGAGCAA+TGG 0.491934 1.3:-47795936 MS.gene073846:CDS
TTAGGCTGTTCCAACTTCAA+AGG 0.500392 1.3:-47795438 MS.gene073846:intron
TAGGCTGTTCCAACTTCAAA+GGG 0.502333 1.3:-47795437 MS.gene073846:CDS
AGCCAACTCCCTGGTCTGGT+TGG 0.504165 1.3:+47794942 None:intergenic
ATGGGAAGATGAAGATCCCT+TGG 0.508546 1.3:+47796486 None:intergenic
CAAGATTAACCAACCAGACC+AGG 0.511143 1.3:-47794951 MS.gene073846:CDS
CAAGCTCTGGCAGATGAATA+CGG 0.517609 1.3:-47795413 MS.gene073846:CDS
CAAAATATTAGTGGGGAACA+AGG 0.518907 1.3:-47795585 MS.gene073846:CDS
AGGTGTCTGACATGTGTCCA+AGG 0.554311 1.3:-47796503 None:intergenic
CGACATGGATGAAAGCAAAA+GGG 0.563915 1.3:-47795561 MS.gene073846:intron
CTTGAGCAGAGCCAACTCCC+TGG 0.575603 1.3:+47794933 None:intergenic
AACCAACCAGACCAGGGAGT+TGG 0.575720 1.3:-47794944 MS.gene073846:CDS
AACTAATATGAATGTAGATG+AGG 0.592652 1.3:-47795284 MS.gene073846:CDS
TCACAAACGTCTTCTTGCTG+TGG 0.593063 1.3:-47794908 MS.gene073846:CDS
TGGTTAATCTTGAGTGTCTG+GGG 0.601058 1.3:+47794962 None:intergenic
AGTGGGGAACAAGGCCGACA+TGG 0.603133 1.3:-47795576 MS.gene073846:CDS
TATTGGGCAGCTTATTACCG+TGG 0.608798 1.3:-47795944 MS.gene073846:intron
GCAAAATACCCATTGCTCCA+CGG 0.620774 1.3:+47795927 None:intergenic
ACTGTTAAAAGATGACTCAT+CGG 0.623062 1.3:+47795889 None:intergenic
GGTGTCTGACATGTGTCCAA+GGG 0.646178 1.3:-47796502 None:intergenic
AAGATTAACCAACCAGACCA+GGG 0.675765 1.3:-47794950 MS.gene073846:CDS
ATGTCAACAAAATATTAGTG+GGG 0.680013 1.3:-47795592 MS.gene073846:CDS
AGAAAGCGACTCAAAGACTG+AGG 0.689584 1.3:-47795221 MS.gene073846:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATCTTTTAAAATCTTAAAA+AGG - chr1.3:47795184-47795203 MS.gene073846:intron 10.0%
!! AATATTTGACAGATAAATAA+GGG + chr1.3:47795165-47795184 None:intergenic 15.0%
!! TAATATTTGACAGATAAATA+AGG + chr1.3:47795166-47795185 None:intergenic 15.0%
!! AATGTCAACAAAATATTAGT+GGG - chr1.3:47795800-47795819 MS.gene073846:intron 20.0%
!!! ATGTGTTCAATCTTTTTATT+GGG - chr1.3:47795433-47795452 MS.gene073846:CDS 20.0%
!!! CTTTTAAAATCTTAAAAAGG+TGG - chr1.3:47795187-47795206 MS.gene073846:intron 20.0%
!!! TTAGAGTATTATAGCTTTAT+AGG - chr1.3:47795288-47795307 MS.gene073846:CDS 20.0%
!!! TTTATTCATGTTTGATGATA+TGG + chr1.3:47795058-47795077 None:intergenic 20.0%
! AACTAATATGAATGTAGATG+AGG - chr1.3:47796109-47796128 MS.gene073846:intron 25.0%
! ATGTCAACAAAATATTAGTG+GGG - chr1.3:47795801-47795820 MS.gene073846:intron 25.0%
! CAATGTCAACAAAATATTAG+TGG - chr1.3:47795799-47795818 MS.gene073846:intron 25.0%
! CATATTAGAAGATTAGAATG+TGG + chr1.3:47795588-47795607 None:intergenic 25.0%
! TAAAATCTTAAAAAGGTGGA+GGG - chr1.3:47795191-47795210 MS.gene073846:intron 25.0%
! TCCATCATATAACAAAAGAA+AGG + chr1.3:47796210-47796229 None:intergenic 25.0%
! TGCTTAAATTTGTATCAAGA+TGG - chr1.3:47795698-47795717 MS.gene073846:intron 25.0%
! TTAAAATCTTAAAAAGGTGG+AGG - chr1.3:47795190-47795209 MS.gene073846:intron 25.0%
! TTGATACAAATTTAAGCACT+GGG + chr1.3:47795696-47795715 None:intergenic 25.0%
!! ATATGTGTTTGAAATAGTGA+CGG + chr1.3:47795400-47795419 None:intergenic 25.0%
!! GATGTGTTCAATCTTTTTAT+TGG - chr1.3:47795432-47795451 MS.gene073846:CDS 25.0%
!!! ACCTTTCTTTTGTTATATGA+TGG - chr1.3:47796206-47796225 MS.gene073846:intron 25.0%
!!! ATATGATGGATTCATTATCT+TGG - chr1.3:47796220-47796239 MS.gene073846:intron 25.0%
!!! CTCTAAAATTGCTAAAGTAT+AGG + chr1.3:47795274-47795293 None:intergenic 25.0%
AAAGAAAACCAGCAATATCA+AGG + chr1.3:47796308-47796327 None:intergenic 30.0%
AATTTGCCAATTCAAGAAGT+TGG - chr1.3:47794964-47794983 MS.gene073846:CDS 30.0%
ACTCTGCATAAACATAATCT+CGG + chr1.3:47796084-47796103 None:intergenic 30.0%
ACTGTTAAAAGATGACTCAT+CGG + chr1.3:47795507-47795526 None:intergenic 30.0%
AGGAAATAATAAAGGAGGAA+TGG + chr1.3:47795565-47795584 None:intergenic 30.0%
ATTAGAAGATTAGAATGTGG+AGG + chr1.3:47795585-47795604 None:intergenic 30.0%
ATTATATGCATACGGGAATA+CGG - chr1.3:47795240-47795259 MS.gene073846:CDS 30.0%
CAGTTATGCTCATAATTTGA+GGG - chr1.3:47795088-47795107 MS.gene073846:intron 30.0%
CATATCCAGACATCAAAAAT+TGG - chr1.3:47795747-47795766 MS.gene073846:intron 30.0%
CTTGATACAAATTTAAGCAC+TGG + chr1.3:47795697-47795716 None:intergenic 30.0%
GAATGTGGAGGAAATAATAA+AGG + chr1.3:47795573-47795592 None:intergenic 30.0%
TACTGGAAATTATTCTCCTT+AGG - chr1.3:47795937-47795956 MS.gene073846:CDS 30.0%
TTTAAATCCACACGAATCAT+TGG - chr1.3:47795616-47795635 MS.gene073846:CDS 30.0%
! ACTTTTCAACTGTGTACTTT+GGG - chr1.3:47795665-47795684 MS.gene073846:intron 30.0%
! AGGTTTTCTTTTCAATAGCT+CGG - chr1.3:47796129-47796148 MS.gene073846:intron 30.0%
! ATGTTTGATGATATGGAAAG+AGG + chr1.3:47795051-47795070 None:intergenic 30.0%
! CTTCACGCTAAATTTTCATT+TGG - chr1.3:47796398-47796417 MS.gene073846:intron 30.0%
! TACTTTTCAACTGTGTACTT+TGG - chr1.3:47795664-47795683 MS.gene073846:intron 30.0%
! TGTTTGATGATATGGAAAGA+GGG + chr1.3:47795050-47795069 None:intergenic 30.0%
!! ATTGGAACAAGTGTTTTTGT+CGG - chr1.3:47795634-47795653 MS.gene073846:CDS 30.0%
!! CTAGGAGTATTATATGCATA+CGG - chr1.3:47795232-47795251 MS.gene073846:CDS 30.0%
!! CTGTTTTGGATGATGATAAT+GGG + chr1.3:47794928-47794947 None:intergenic 30.0%
!! TACTTTTTGGATACTGATCT+AGG - chr1.3:47795214-47795233 MS.gene073846:intron 30.0%
!! TAGGAGTATTATATGCATAC+GGG - chr1.3:47795233-47795252 MS.gene073846:CDS 30.0%
AAGTGTAGCATAGTAATCAC+AGG + chr1.3:47795915-47795934 None:intergenic 35.0%
AGGTTACCAACTTCTTGAAT+TGG + chr1.3:47794973-47794992 None:intergenic 35.0%
CAAAATATTAGTGGGGAACA+AGG - chr1.3:47795808-47795827 MS.gene073846:intron 35.0%
CAACTGTTATGTTGCATGTT+TGG - chr1.3:47796334-47796353 MS.gene073846:intron 35.0%
CCAGTTATGCTCATAATTTG+AGG - chr1.3:47795087-47795106 MS.gene073846:intron 35.0%
CCTCAAATTATGAGCATAAC+TGG + chr1.3:47795090-47795109 None:intergenic 35.0%
TACATGGAAAACCAAAAGGA+TGG + chr1.3:47795883-47795902 None:intergenic 35.0%
TACTATGCTACACTTGATAC+TGG - chr1.3:47795920-47795939 MS.gene073846:CDS 35.0%
TCATAATTTGAGGGAGAACA+AGG - chr1.3:47795097-47795116 MS.gene073846:intron 35.0%
TGTGGAGGAAATAATAAAGG+AGG + chr1.3:47795570-47795589 None:intergenic 35.0%
TTGGTTAATCTTGAGTGTCT+GGG + chr1.3:47796435-47796454 None:intergenic 35.0%
! CGAATCCAATTTTTGATGTC+TGG + chr1.3:47795755-47795774 None:intergenic 35.0%
! CTTTTCAACTGTGTACTTTG+GGG - chr1.3:47795666-47795685 MS.gene073846:intron 35.0%
! GGTTTTCTTTTCAATAGCTC+GGG - chr1.3:47796130-47796149 MS.gene073846:intron 35.0%
! TAAGTTCTTTTTCCACCTTC+TGG - chr1.3:47795526-47795545 MS.gene073846:intron 35.0%
! TTACTCTTTGTCCATCCTTT+TGG - chr1.3:47795869-47795888 MS.gene073846:intron 35.0%
!! ATTCAGAAGCTATGCTGTTT+TGG + chr1.3:47794942-47794961 None:intergenic 35.0%
!! GCTGTTTTGGATGATGATAA+TGG + chr1.3:47794929-47794948 None:intergenic 35.0%
!! TGTGATTCATTTGATGACGA+AGG + chr1.3:47794993-47795012 None:intergenic 35.0%
AAGATTAACCAACCAGACCA+GGG - chr1.3:47796443-47796462 MS.gene073846:CDS 40.0%
ACTTGTTCCAATGATTCGTG+TGG + chr1.3:47795626-47795645 None:intergenic 40.0%
ATGATATGGAAAGAGGGAGA+GGG + chr1.3:47795044-47795063 None:intergenic 40.0%
CGACATGGATGAAAGCAAAA+GGG - chr1.3:47795832-47795851 MS.gene073846:intron 40.0%
CGTGTACATGGAAAACCAAA+AGG + chr1.3:47795887-47795906 None:intergenic 40.0%
GCAAAACTAAAACCAGAAGG+TGG + chr1.3:47795541-47795560 None:intergenic 40.0%
GTTGGTTAATCTTGAGTGTC+TGG + chr1.3:47796436-47796455 None:intergenic 40.0%
TAAGCAGCACTTACTCTTGT+TGG - chr1.3:47796023-47796042 MS.gene073846:intron 40.0%
TAGGCTGTTCCAACTTCAAA+GGG - chr1.3:47795956-47795975 MS.gene073846:intron 40.0%
TCACAGGATATACGTGTACA+TGG + chr1.3:47795899-47795918 None:intergenic 40.0%
TGGTTAATCTTGAGTGTCTG+GGG + chr1.3:47796434-47796453 None:intergenic 40.0%
TTAGGCTGTTCCAACTTCAA+AGG - chr1.3:47795955-47795974 MS.gene073846:intron 40.0%
! CCTTTTGCTTTCATCCATGT+CGG + chr1.3:47795834-47795853 None:intergenic 40.0%
! TTTGAAGTTGGAACAGCCTA+AGG + chr1.3:47795956-47795975 None:intergenic 40.0%
!! TGTATGCCAAAGTGTTGAAG+AGG - chr1.3:47795136-47795155 MS.gene073846:intron 40.0%
!!! AAAAGGTGGAGGGTACTTTT+TGG - chr1.3:47795201-47795220 MS.gene073846:intron 40.0%
AACTTCAAAGGGTCAAGCTC+TGG - chr1.3:47795967-47795986 MS.gene073846:intron 45.0%
AAGAGGGAGAGGGATATTTG+TGG + chr1.3:47795034-47795053 None:intergenic 45.0%
AGAAAGCGACTCAAAGACTG+AGG - chr1.3:47796172-47796191 MS.gene073846:intron 45.0%
AGAGGGAGAGGGATATTTGT+GGG + chr1.3:47795033-47795052 None:intergenic 45.0%
AGCTTATTACCGTGGAGCAA+TGG - chr1.3:47795457-47795476 MS.gene073846:intron 45.0%
ATGGGAAGATGAAGATCCCT+TGG + chr1.3:47794910-47794929 None:intergenic 45.0%
CAAGATTAACCAACCAGACC+AGG - chr1.3:47796442-47796461 MS.gene073846:CDS 45.0%
CCGACATGGATGAAAGCAAA+AGG - chr1.3:47795831-47795850 MS.gene073846:intron 45.0%
CGGAATTAGAAACAGCACAG+CGG + chr1.3:47796064-47796083 None:intergenic 45.0%
GAGAACAAGGCTCAAGTTAC+TGG - chr1.3:47795110-47795129 MS.gene073846:intron 45.0%
GATGATATGGAAAGAGGGAG+AGG + chr1.3:47795045-47795064 None:intergenic 45.0%
GCAAAATACCCATTGCTCCA+CGG + chr1.3:47795469-47795488 None:intergenic 45.0%
GCTTATTACCGTGGAGCAAT+GGG - chr1.3:47795458-47795477 MS.gene073846:intron 45.0%
GGACAAAGAGTAAGTGTGTG+AGG + chr1.3:47795862-47795881 None:intergenic 45.0%
GGCGCAAAACTAAAACCAGA+AGG + chr1.3:47795544-47795563 None:intergenic 45.0%
TAGAAACAGCACAGCGGTTT+CGG + chr1.3:47796058-47796077 None:intergenic 45.0%
TATTGGGCAGCTTATTACCG+TGG - chr1.3:47795449-47795468 MS.gene073846:intron 45.0%
TCACAAACGTCTTCTTGCTG+TGG - chr1.3:47796485-47796504 MS.gene073846:CDS 45.0%
! CAAGCTCTGGCAGATGAATA+CGG - chr1.3:47795980-47795999 MS.gene073846:intron 45.0%
!! AGAGCTTGACCCTTTGAAGT+TGG + chr1.3:47795968-47795987 None:intergenic 45.0%
CGACGCTTCCTTGATATTGC+TGG - chr1.3:47796297-47796316 MS.gene073846:intron 50.0%
GGGATGCCTCTTCAACACTT+TGG + chr1.3:47795145-47795164 None:intergenic 50.0%
AACCAACCAGACCAGGGAGT+TGG - chr1.3:47796449-47796468 MS.gene073846:CDS 55.0%
AGCCAACTCCCTGGTCTGGT+TGG + chr1.3:47796454-47796473 None:intergenic 60.0%
AGTGGGGAACAAGGCCGACA+TGG - chr1.3:47795817-47795836 MS.gene073846:intron 60.0%
CTTGAGCAGAGCCAACTCCC+TGG + chr1.3:47796463-47796482 None:intergenic 60.0%
GCAGAGCCAACTCCCTGGTC+TGG + chr1.3:47796458-47796477 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr1.3 gene 47794901 47796514 47794901 ID=MS.gene073846
chr1.3 mRNA 47794901 47796514 47794901 ID=MS.gene073846.t1;Parent=MS.gene073846
chr1.3 exon 47796430 47796514 47796430 ID=MS.gene073846.t1.exon1;Parent=MS.gene073846.t1
chr1.3 CDS 47796430 47796514 47796430 ID=cds.MS.gene073846.t1;Parent=MS.gene073846.t1
chr1.3 exon 47795891 47795956 47795891 ID=MS.gene073846.t1.exon2;Parent=MS.gene073846.t1
chr1.3 CDS 47795891 47795956 47795891 ID=cds.MS.gene073846.t1;Parent=MS.gene073846.t1
chr1.3 exon 47795562 47795659 47795562 ID=MS.gene073846.t1.exon3;Parent=MS.gene073846.t1
chr1.3 CDS 47795562 47795659 47795562 ID=cds.MS.gene073846.t1;Parent=MS.gene073846.t1
chr1.3 exon 47795394 47795456 47795394 ID=MS.gene073846.t1.exon4;Parent=MS.gene073846.t1
chr1.3 CDS 47795394 47795456 47795394 ID=cds.MS.gene073846.t1;Parent=MS.gene073846.t1
chr1.3 exon 47795222 47795314 47795222 ID=MS.gene073846.t1.exon5;Parent=MS.gene073846.t1
chr1.3 CDS 47795222 47795314 47795222 ID=cds.MS.gene073846.t1;Parent=MS.gene073846.t1
chr1.3 exon 47794901 47794984 47794901 ID=MS.gene073846.t1.exon6;Parent=MS.gene073846.t1
chr1.3 CDS 47794901 47794984 47794901 ID=cds.MS.gene073846.t1;Parent=MS.gene073846.t1
Gene Sequence

>MS.gene073846

ATGTGTCCAAGGGATCTTCATCTTCCCATTATCATCATCCAAAACAGCATAGCTTCTGAATTTAATTTGCCAATTCAAGAAGTTGGTAACCTTCGTCATCAAATGAATCACACACATCACTACTAATATCCCACAAATATCCCTCTCCCTCTTTCCATATCATCAAACATGAATAAAGTATCTACTCCAGTTATGCTCATAATTTGAGGGAGAACAAGGCTCAAGTTACTGGAGCTGTATGCCAAAGTGTTGAAGAGGCATCCCTTATTTATCTGTCAAATATTATCTTTTAAAATCTTAAAAAGGTGGAGGGTACTTTTTGGATACTGATCTAGGAGTATTATATGCATACGGGAATACGGCTATGACACCTATACTTTAGCAATTTTAGAGTATTATAGCTTTATAGGTTCTACTCTATATACTAATGTGATTATGTATTGCAAGATGTTGCTTGTTTGTCAATATCAGTGCATATTGTGATATTGATTGACAGCCGTCACTATTTCAAACACATATTTCTACTCTGATGATGTGTTCAATCTTTTTATTGGGCAGCTTATTACCGTGGAGCAATGGGTATTTTGCTTGTGTATGATGTCACCGATGAGTCATCTTTTAACAGTAAGTTCTTTTTCCACCTTCTGGTTTTAGTTTTGCGCCATTCCTCCTTTATTATTTCCTCCACATTCTAATCTTCTAATATGCTTGTTTCTTTAAATCCACACGAATCATTGGAACAAGTGTTTTTGTCGGCAAACTCTACTTTTCAACTGTGTACTTTGGGGAGATCCCAGTGCTTAAATTTGTATCAAGATGGAACTGACTTCTATATTTGTTTCATCTCATATCCAGACATCAAAAATTGGATTCGCAACATTGAGCAGCATGCTTCTGACAATGTCAACAAAATATTAGTGGGGAACAAGGCCGACATGGATGAAAGCAAAAGGGTTTGCCTCACACACTTACTCTTTGTCCATCCTTTTGGTTTTCCATGTACACGTATATCCTGTGATTACTATGCTACACTTGATACTGGAAATTATTCTCCTTAGGCTGTTCCAACTTCAAAGGGTCAAGCTCTGGCAGATGAATACGGCATCAAATTTTTCGAAACTGTAAGCAGCACTTACTCTTGTTGGAAAAGCATTCCGAAACCGCTGTGCTGTTTCTAATTCCGAGATTATGTTTATGCAGAGTGCAAAAACTAATATGAATGTAGATGAGGTTTTCTTTTCAATAGCTCGGGACATCAAACAAAGACTTGCAGAAAGCGACTCAAAGACTGAGGTTTTTATTTCGACCTTTCTTTTGTTATATGATGGATTCATTATCTTGGAAGTTGCAACAGTTTATAATTGCATTATTTTTTGATTTATTTGAAGTTAATGCACGACGCTTCCTTGATATTGCTGGTTTTCTTTTTTAGACAACTGTTATGTTGCATGTTTGGTTGAATAAGAAAATCTATATCAGATTTAATTGCTTCATCATCTTCACGCTAAATTTTCATTTGGTTCTTTGCAGCCCCAGACACTCAAGATTAACCAACCAGACCAGGGAGTTGGCTCTGCTCAAGCATCACAAACGTCTTCTTGCTGTGGTTCTTAG
Protein sequence

>MS.gene073846.t1

MCPRDLHLPIIIIQNSIASEFNLPIQEVAYYRGAMGILLVYDVTDESSFNNIKNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNMNVDEVFFSIARDIKQRLAESDSKTEPQTLKINQPDQGVGSAQASQTSSCCGS