AlfalfaGEDB | MS.gene059900

M. sativa cultivar XinJiangDaYe / MS.gene059900

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene059900.t1	XP_003596481.1	94.9	117	6	0	1	117	1	117	2.70E-52	214.5

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene059900.t1	G7IR51	94.9	117	6	0	1	117	1	117	2.0e-52	214.5

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene057102	MS.gene059900	-0.816355	5.77E-52	-1.69E-46
MS.gene05985	MS.gene059900	0.805507	1.29E-49	-1.69E-46
MS.gene059900	MS.gene060338	-0.810888	9.22E-51	-1.69E-46
MS.gene059900	MS.gene061188	-0.801707	7.93E-49	-1.69E-46
MS.gene059900	MS.gene067770	-0.840559	8.09E-58	-1.69E-46
MS.gene059900	MS.gene07325	-0.807589	4.69E-50	-1.69E-46
MS.gene059900	MS.gene073846	-0.809704	1.66E-50	-1.69E-46
MS.gene059900	MS.gene07529	-0.81185	5.70E-51	-1.69E-46
MS.gene059900	MS.gene09934	-0.818637	1.77E-52	-1.69E-46
MS.gene059900	MS.gene20874	-0.809542	1.80E-50	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene059900.t1	MTR_2g081000	94.872	117	6	0	1	117	1	117	1.82e-65	207

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 41 sgRNAs with CRISPR-Local

Find 45 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAAATATGACAAACCTC+AGG	0.569697	2.2:-15067264	None:intergenic
AAAGGTAAATACGGTGCGTT+TGG	0.441403	2.2:+15067180	MS.gene059900:CDS
AACATTAATCCGGTTATGAA+AGG	0.530557	2.2:+15067162	MS.gene059900:CDS
AAGGGATGGATGAGTTCATT+GGG	0.454914	2.2:-15066960	None:intergenic
AAGTAACAAGTCTGCGCCTG+AGG	0.601985	2.2:+15067248	MS.gene059900:CDS
AATATCGCTGTCGACATCGG+CGG	0.624159	2.2:-15067073	None:intergenic
ACCACGATCGGATAACAAGA+CGG	0.656119	2.2:-15067041	None:intergenic
ACCGGAAGCGGAAAGAGGCG+CGG	0.630373	2.2:-15067139	None:intergenic
ACGATCGGATAACAAGACGG+CGG	0.806476	2.2:-15067038	None:intergenic
AGGAGAGGGAGTTTAGGGAA+GGG	0.533110	2.2:-15067003	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGAAATATGACAAACCTC+AGG	-	chr2.2:15067267-15067286	None:intergenic	30.0%
AACATTAATCCGGTTATGAA+AGG	+	chr2.2:15067162-15067181	MS.gene059900:CDS	30.0%
CATAACCGGATTAATGTTAC+CGG	-	chr2.2:15067160-15067179	None:intergenic	35.0%
CCGGTTATGAAAGGTAAATA+CGG	+	chr2.2:15067171-15067190	MS.gene059900:CDS	35.0%
CCGTATTTACCTTTCATAAC+CGG	-	chr2.2:15067174-15067193	None:intergenic	35.0%
AAAGGTAAATACGGTGCGTT+TGG	+	chr2.2:15067180-15067199	MS.gene059900:CDS	40.0%
AAGGGATGGATGAGTTCATT+GGG	-	chr2.2:15066963-15066982	None:intergenic	40.0%
ACCACGATCGGATAACAAGA+CGG	-	chr2.2:15067044-15067063	None:intergenic	45.0%
CGCTTCCGGTAACATTAATC+CGG	+	chr2.2:15067152-15067171	MS.gene059900:CDS	45.0%
CGGATTAATGTTACCGGAAG+CGG	-	chr2.2:15067154-15067173	None:intergenic	45.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2.2	gene	15066922	15067299	15066922	ID=MS.gene059900
chr2.2	mRNA	15066922	15067299	15066922	ID=MS.gene059900.t1;Parent=MS.gene059900
chr2.2	exon	15066922	15067299	15066922	ID=MS.gene059900.t1.exon1;Parent=MS.gene059900.t1
chr2.2	CDS	15066922	15067299	15066922	ID=cds.MS.gene059900.t1;Parent=MS.gene059900.t1

Gene Sequence	>MS.gene059900 ATGTCGTCTCACGCGCTGTTTCAAGCAGCGCAAATCCTCCCAATGAACTCATCCATCCCTTCTAAAACCTTATCACCAAAACCCTTCCCTAAACTCCCTCTCCTCCGTAACCGTCACCGCCGTCTTGTTATCCGATCGTGGTCCGCTTCTCCCGCCGATGTCGACAGCGATATTTCCTCCGGTTCCTCGCTGCTTGAACGGTGTTTCGCTGCTCCGGCCGCGCCTCTTTCCGCTTCCGGTAACATTAATCCGGTTATGAAAGGTAAATACGGTGCGTTTGGTGCCGTTACGCTCGAGAAATCGAAGCTTGAAATTTCGCAACAACAAAGTAACAAGTCTGCGCCTGAGGTTTGTCATATTTCTTTCTTTCTTCACTAG
Protein sequence	>MS.gene059900.t1 MSSHALFQAAQILPMNSSIPSKTLSPKPFPKLPLLRNRHRRLVIRSWSASPADVDSDISSGSSLLERCFAAPAAPLSASGNINPVMKGKYGAFGAVTLEKSKLEISQQQSNKSAPEVCHISFFLH