Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene073889.t1 | RHN78664.1 | 95.5 | 404 | 15 | 2 | 18 | 419 | 13 | 415 | 1.00E-167 | 599.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene073889.t1 | A0A396JN85 | 95.5 | 404 | 15 | 2 | 18 | 419 | 13 | 415 | 7.3e-168 | 599.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene073889.t1 | TR | Others |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene053444 | MS.gene073889 | 0.886719 | 2.68E-72 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene073889.t1 | MTR_1g044785 | 96.957 | 230 | 5 | 1 | 192 | 419 | 1 | 230 | 1.34e-164 | 461 |
| MS.gene073889.t1 | MTR_1g073350 | 64.608 | 421 | 111 | 13 | 18 | 419 | 13 | 414 | 1.94e-153 | 440 |
| MS.gene073889.t1 | MTR_2g068730 | 62.500 | 64 | 24 | 0 | 304 | 367 | 144 | 207 | 4.88e-22 | 95.1 |
| MS.gene073889.t1 | MTR_8g098725 | 46.847 | 111 | 53 | 2 | 309 | 413 | 211 | 321 | 7.15e-22 | 95.9 |
| MS.gene073889.t1 | MTR_8g098725 | 46.847 | 111 | 53 | 2 | 309 | 413 | 215 | 325 | 7.94e-22 | 95.9 |
| MS.gene073889.t1 | MTR_5g010120 | 51.064 | 94 | 38 | 2 | 296 | 381 | 142 | 235 | 2.13e-20 | 90.5 |
| MS.gene073889.t1 | MTR_4g061823 | 57.812 | 64 | 27 | 0 | 308 | 371 | 130 | 193 | 6.34e-19 | 85.9 |
| MS.gene073889.t1 | MTR_4g061910 | 57.812 | 64 | 27 | 0 | 308 | 371 | 130 | 193 | 6.34e-19 | 85.9 |
| MS.gene073889.t1 | MTR_2g096080 | 44.330 | 97 | 51 | 1 | 271 | 367 | 106 | 199 | 3.98e-18 | 84.0 |
| MS.gene073889.t1 | MTR_1g008220 | 64.583 | 48 | 17 | 0 | 321 | 368 | 230 | 277 | 5.82e-16 | 78.2 |
| MS.gene073889.t1 | MTR_3g091340 | 65.306 | 49 | 17 | 0 | 319 | 367 | 197 | 245 | 2.07e-15 | 75.9 |
| MS.gene073889.t1 | MTR_3g091340 | 65.306 | 49 | 17 | 0 | 319 | 367 | 190 | 238 | 2.14e-15 | 75.9 |
| MS.gene073889.t1 | MTR_3g091340 | 65.306 | 49 | 17 | 0 | 319 | 367 | 226 | 274 | 3.95e-15 | 75.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene073889.t1 | AT1G04500 | 47.717 | 438 | 158 | 15 | 1 | 419 | 1 | 386 | 2.80e-108 | 324 |
| MS.gene073889.t1 | AT1G04500 | 47.717 | 438 | 158 | 15 | 1 | 419 | 1 | 386 | 2.80e-108 | 324 |
| MS.gene073889.t1 | AT1G04500 | 47.506 | 421 | 153 | 14 | 18 | 419 | 6 | 377 | 1.53e-104 | 315 |
| MS.gene073889.t1 | AT2G33350 | 48.539 | 445 | 167 | 15 | 1 | 419 | 1 | 409 | 2.50e-103 | 313 |
| MS.gene073889.t1 | AT2G33350 | 48.430 | 446 | 167 | 16 | 1 | 419 | 1 | 410 | 1.31e-101 | 308 |
| MS.gene073889.t1 | AT2G33350 | 47.664 | 428 | 163 | 14 | 18 | 419 | 6 | 398 | 4.01e-97 | 296 |
| MS.gene073889.t1 | AT2G33350 | 47.664 | 428 | 163 | 14 | 18 | 419 | 26 | 418 | 2.32e-96 | 295 |
| MS.gene073889.t1 | AT1G04500 | 42.936 | 361 | 137 | 14 | 1 | 344 | 1 | 309 | 9.77e-66 | 215 |
| MS.gene073889.t1 | AT2G33350 | 43.666 | 371 | 142 | 15 | 1 | 344 | 1 | 331 | 2.13e-64 | 210 |
| MS.gene073889.t1 | AT1G63820 | 46.457 | 127 | 57 | 3 | 266 | 385 | 134 | 256 | 7.04e-27 | 109 |
| MS.gene073889.t1 | AT5G41380 | 67.742 | 62 | 20 | 0 | 309 | 370 | 201 | 262 | 2.67e-23 | 99.8 |
| MS.gene073889.t1 | AT3G12890 | 55.172 | 87 | 35 | 1 | 314 | 400 | 130 | 212 | 3.94e-23 | 98.2 |
| MS.gene073889.t1 | AT4G27900 | 39.806 | 103 | 36 | 2 | 271 | 368 | 178 | 259 | 4.50e-16 | 78.2 |
| MS.gene073889.t1 | AT4G27900 | 39.806 | 103 | 36 | 2 | 271 | 368 | 178 | 259 | 4.50e-16 | 78.2 |
| MS.gene073889.t1 | AT5G53420 | 65.957 | 47 | 16 | 0 | 321 | 367 | 137 | 183 | 1.55e-15 | 75.1 |
| MS.gene073889.t1 | AT5G53420 | 65.957 | 47 | 16 | 0 | 321 | 367 | 137 | 183 | 1.55e-15 | 75.1 |
| MS.gene073889.t1 | AT5G53420 | 65.957 | 47 | 16 | 0 | 321 | 367 | 137 | 183 | 1.55e-15 | 75.1 |
| MS.gene073889.t1 | AT5G53420 | 65.957 | 47 | 16 | 0 | 321 | 367 | 216 | 262 | 3.43e-15 | 75.9 |
| MS.gene073889.t1 | AT5G59990 | 42.373 | 118 | 49 | 2 | 298 | 413 | 138 | 238 | 1.65e-14 | 73.2 |
Find 68 sgRNAs with CRISPR-Local
Find 187 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGCTTGAGATATGTTGTTTA+AGG | 0.115598 | 1.2:+27651107 | None:intergenic |
| GGAAAGGTTGTTATTATTAT+TGG | 0.150644 | 1.2:+27650963 | None:intergenic |
| ACACAACCTCATCATCTTTC+TGG | 0.167128 | 1.2:-27650805 | MS.gene073889:CDS |
| TTTGCAAAGAATGATGATTT+TGG | 0.213280 | 1.2:-27649466 | MS.gene073889:CDS |
| GCTGATAGTTCTAGCTTATT+TGG | 0.217917 | 1.2:-27650598 | MS.gene073889:CDS |
| TTACTTCATCTTCATCTTCA+TGG | 0.258336 | 1.2:+27649416 | None:intergenic |
| TTGGATTATCAAGGTGAAAA+TGG | 0.259352 | 1.2:-27650535 | MS.gene073889:CDS |
| TCCTCCAAGTGTGAAATTTC+TGG | 0.285986 | 1.2:+27649738 | None:intergenic |
| TTTGGTGGAGGGATTCTATT+AGG | 0.306595 | 1.2:-27650580 | MS.gene073889:CDS |
| TGAAATGCAGACACAAGATT+TGG | 0.326244 | 1.2:-27650554 | MS.gene073889:CDS |
| TTCTTGTGAATCAAAGATAA+TGG | 0.355504 | 1.2:+27650942 | None:intergenic |
| CATCATCTTTCTGGTTTGAA+AGG | 0.369735 | 1.2:-27650796 | MS.gene073889:CDS |
| GATAGCCGACCGCGAGTTAG+AGG | 0.377396 | 1.2:-27649493 | MS.gene073889:CDS |
| TTGTACAGATTCTGTTCAAC+AGG | 0.388571 | 1.2:-27650503 | MS.gene073889:CDS |
| GAGGACTCTTCTTTGAAAGT+TGG | 0.400610 | 1.2:-27649720 | MS.gene073889:CDS |
| GAGAATCACAAACTAGTATC+TGG | 0.409472 | 1.2:-27649789 | MS.gene073889:CDS |
| TCTTGTTCTTATCTTAGTAA+TGG | 0.420390 | 1.2:-27650661 | MS.gene073889:CDS |
| TGTTAAAGAAGAAGATGATA+TGG | 0.428400 | 1.2:-27649172 | MS.gene073889:CDS |
| TTGTTAACATTGTTTGTGGT+AGG | 0.435899 | 1.2:+27651003 | None:intergenic |
| TGTTCTTGATGAGTTGTTAT+CGG | 0.437627 | 1.2:+27650847 | None:intergenic |
| TCTTCATGGTTGCTACTACC+TGG | 0.441983 | 1.2:+27649430 | None:intergenic |
| TCTTATCTTAGTAATGGCTT+AGG | 0.445374 | 1.2:-27650655 | MS.gene073889:CDS |
| ATAGGATCAGTTTGATATTG+TGG | 0.454553 | 1.2:+27650769 | None:intergenic |
| GATAGTTCTAGCTTATTTGG+TGG | 0.459834 | 1.2:-27650595 | MS.gene073889:CDS |
| TGGAAGTTGTTCTGCCACTT+TGG | 0.463869 | 1.2:-27649763 | MS.gene073889:CDS |
| TCAAACTGATCCTATATCTT+CGG | 0.472302 | 1.2:-27650761 | MS.gene073889:CDS |
| GGTGTGTATCATGGAAATCT+TGG | 0.472409 | 1.2:-27650634 | MS.gene073889:CDS |
| ATCATCTTTCTGGTTTGAAA+GGG | 0.478809 | 1.2:-27650795 | MS.gene073889:CDS |
| GGCACCAGAAATTTCACACT+TGG | 0.479570 | 1.2:-27649742 | MS.gene073889:CDS |
| AGTTCTAGCTTATTTGGTGG+AGG | 0.485926 | 1.2:-27650592 | MS.gene073889:CDS |
| ACCAGAAATTTCACACTTGG+AGG | 0.486593 | 1.2:-27649739 | MS.gene073889:CDS |
| AGCGGTGCTGCCGAAGATAT+AGG | 0.487136 | 1.2:+27650751 | None:intergenic |
| ACACAAGATTTGGATTATCA+AGG | 0.487381 | 1.2:-27650544 | MS.gene073889:CDS |
| ATCATACCTGAAAATCTTGA+GGG | 0.501022 | 1.2:+27650473 | None:intergenic |
| GATGGAATAGTTGCATTTGA+AGG | 0.501927 | 1.2:+27649107 | None:intergenic |
| GAACAAGAAGGAGAATAAGA+AGG | 0.504833 | 1.2:+27650676 | None:intergenic |
| GATGTTGTTAACATTGTTTG+TGG | 0.505534 | 1.2:+27650999 | None:intergenic |
| CACAAACTAGTATCTGGTGC+TGG | 0.507442 | 1.2:-27649783 | MS.gene073889:CDS |
| GAAAACTTTCTGTTGAGCAA+AGG | 0.518365 | 1.2:-27649698 | MS.gene073889:CDS |
| TGTTAACATTGTTTGTGGTA+GGG | 0.519810 | 1.2:+27651004 | None:intergenic |
| TCTAACTCGCGGTCGGCTAT+CGG | 0.529354 | 1.2:+27649495 | None:intergenic |
| GATTATCAAGGTGAAAATGG+TGG | 0.531561 | 1.2:-27650532 | MS.gene073889:CDS |
| GATCATACCTGAAAATCTTG+AGG | 0.542555 | 1.2:+27650472 | None:intergenic |
| GTTCTAGCTTATTTGGTGGA+GGG | 0.546863 | 1.2:-27650591 | MS.gene073889:CDS |
| AATGGCTTAGGTGTGTATCA+TGG | 0.554708 | 1.2:-27650643 | MS.gene073889:CDS |
| TTTGGAGAGAATCATAGGCC+AGG | 0.559627 | 1.2:-27649448 | MS.gene073889:CDS |
| AATTCAAATCAATGAGTGGA+TGG | 0.563218 | 1.2:+27649089 | None:intergenic |
| CAATCATCTTCAAATACAGA+AGG | 0.568846 | 1.2:+27650712 | None:intergenic |
| AAATTTCAGCAAGAAAATCA+AGG | 0.584947 | 1.2:-27649634 | MS.gene073889:intron |
| GATATCTTTGCACATATCAG+TGG | 0.587582 | 1.2:-27649138 | MS.gene073889:CDS |
| GCCGACCGCGAGTTAGAGGA+AGG | 0.600682 | 1.2:-27649489 | MS.gene073889:CDS |
| TTCAAACCAGAAAGATGATG+AGG | 0.600906 | 1.2:+27650799 | None:intergenic |
| CATTAATTCAAATCAATGAG+TGG | 0.603791 | 1.2:+27649085 | None:intergenic |
| TTACTAAGATAAGAACAAGA+AGG | 0.626377 | 1.2:+27650664 | None:intergenic |
| GATAGTTGATCATCATGTGA+TGG | 0.626409 | 1.2:+27653270 | None:intergenic |
| GTGAATCAAAGATAATGGAA+AGG | 0.627025 | 1.2:+27650947 | None:intergenic |
| TGAGTTGTTATCGGAAGAAG+CGG | 0.627559 | 1.2:+27650856 | None:intergenic |
| TGAAATTTCTGGTGCCAAAG+TGG | 0.631400 | 1.2:+27649749 | None:intergenic |
| GCAAACCTTCCTCTAACTCG+CGG | 0.633175 | 1.2:+27649484 | None:intergenic |
| AATCATCTTCAAATACAGAA+GGG | 0.635264 | 1.2:+27650713 | None:intergenic |
| GTGGATAACATCTTGCAACA+TGG | 0.639926 | 1.2:+27653296 | None:intergenic |
| AGTTGATCATCATGTGATGG+AGG | 0.641758 | 1.2:+27653273 | None:intergenic |
| GGGAGTGAAGCACTCATAAG+CGG | 0.643710 | 1.2:+27650733 | None:intergenic |
| ACCTTCCTCTAACTCGCGGT+CGG | 0.662592 | 1.2:+27649488 | None:intergenic |
| GTTGTTATCGGAAGAAGCGG+CGG | 0.673069 | 1.2:+27650859 | None:intergenic |
| GATCATCATGTGATGGAGGG+TGG | 0.675915 | 1.2:+27653277 | None:intergenic |
| GTTGATCATCATGTGATGGA+GGG | 0.699079 | 1.2:+27653274 | None:intergenic |
| GATATGTGCAAAGATATCTG+AGG | 0.713563 | 1.2:+27649143 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GATAAAATATATAATTAACA+AGG | + | chr1.2:27649159-27649178 | None:intergenic | 10.0% |
| !!! | ATAATTGTATTTTCTTTTAT+AGG | - | chr1.2:27652563-27652582 | MS.gene073889:intron | 10.0% |
| !!! | ATTAAAAAATACTTTTGATT+TGG | - | chr1.2:27652202-27652221 | MS.gene073889:intron | 10.0% |
| !!! | TTTAAAATTTAATGTAACTT+AGG | + | chr1.2:27650417-27650436 | None:intergenic | 10.0% |
| !! | AAACATATTTATGTTAAACT+CGG | - | chr1.2:27650435-27650454 | MS.gene073889:intron | 15.0% |
| !! | ACAAAGATAATTATGTTAAT+TGG | - | chr1.2:27650794-27650813 | MS.gene073889:CDS | 15.0% |
| !! | AGTAATTAATACTTATAACT+AGG | + | chr1.2:27649497-27649516 | None:intergenic | 15.0% |
| !! | CTTGTATATAAAAAAACATA+AGG | + | chr1.2:27651031-27651050 | None:intergenic | 15.0% |
| !! | TCTTATTATAGAAGATATTA+TGG | - | chr1.2:27651980-27651999 | MS.gene073889:intron | 15.0% |
| !! | TGAAATATTTCTCAAATATT+CGG | + | chr1.2:27650508-27650527 | None:intergenic | 15.0% |
| !!! | ATCGTTTTGTTAAATAAATT+TGG | + | chr1.2:27653006-27653025 | None:intergenic | 15.0% |
| !!! | TCATTTTTCTTTTCATTAAA+TGG | + | chr1.2:27649988-27650007 | None:intergenic | 15.0% |
| !!! | TTTTTATTATCAACTTAAAG+TGG | + | chr1.2:27652246-27652265 | None:intergenic | 15.0% |
| !! | AAATCAAGGAAAATTTAACA+AGG | + | chr1.2:27651961-27651980 | None:intergenic | 20.0% |
| !! | AACATATTTATGTTAAACTC+GGG | - | chr1.2:27650436-27650455 | MS.gene073889:intron | 20.0% |
| !! | AATTGTTAAAAGATTAGAAG+AGG | - | chr1.2:27652080-27652099 | MS.gene073889:intron | 20.0% |
| !! | ATACCATCAAATAATTGAAA+AGG | + | chr1.2:27653149-27653168 | None:intergenic | 20.0% |
| !! | ATATATAATTAACAAGGTTG+AGG | + | chr1.2:27649153-27649172 | None:intergenic | 20.0% |
| !! | ATATTCTTTATTCAGTTAGA+TGG | - | chr1.2:27649858-27649877 | MS.gene073889:intron | 20.0% |
| !! | ATGACAAAAAAAGTTCATAT+AGG | - | chr1.2:27649903-27649922 | MS.gene073889:intron | 20.0% |
| !! | CTAATATCAAATTGAAACTT+TGG | + | chr1.2:27650869-27650888 | None:intergenic | 20.0% |
| !! | GTTATTAACATTAGGTAATT+TGG | - | chr1.2:27650056-27650075 | MS.gene073889:intron | 20.0% |
| !! | TAAAAACTATTGAACACATA+AGG | + | chr1.2:27651076-27651095 | None:intergenic | 20.0% |
| !! | TATATGTCTATTACCAATTA+TGG | - | chr1.2:27650169-27650188 | MS.gene073889:intron | 20.0% |
| !! | TATTCTTTATTCAGTTAGAT+GGG | - | chr1.2:27649859-27649878 | MS.gene073889:intron | 20.0% |
| !! | TCGAGAATAATTTAAGAAAA+TGG | + | chr1.2:27650712-27650731 | None:intergenic | 20.0% |
| !! | TCTTCTATAATAAGAAATCA+AGG | + | chr1.2:27651975-27651994 | None:intergenic | 20.0% |
| !! | TTGTTAAATAAATTTGGCTA+GGG | + | chr1.2:27653000-27653019 | None:intergenic | 20.0% |
| !! | TTTGTTAAATAAATTTGGCT+AGG | + | chr1.2:27653001-27653020 | None:intergenic | 20.0% |
| !!! | AGTTAATTTGTTTGAAAAGA+GGG | - | chr1.2:27649277-27649296 | MS.gene073889:intron | 20.0% |
| !!! | ATCAAAATGTCATTTTCTAA+GGG | - | chr1.2:27649721-27649740 | MS.gene073889:CDS | 20.0% |
| !!! | GTTTTGATGTTATTAACATT+AGG | - | chr1.2:27650048-27650067 | MS.gene073889:intron | 20.0% |
| !!! | TACTGAAAAAATTGCATTTT+TGG | - | chr1.2:27650375-27650394 | MS.gene073889:intron | 20.0% |
| !!! | TCAATTTTTACTTTGTATGT+AGG | + | chr1.2:27652032-27652051 | None:intergenic | 20.0% |
| !!! | TGCAATCTATCTTAATATTT+TGG | + | chr1.2:27650551-27650570 | None:intergenic | 20.0% |
| !!! | TTTCCTTTTCAATTATTTGA+TGG | - | chr1.2:27653143-27653162 | MS.gene073889:intron | 20.0% |
| ! | AAAAAATACTGAAAGTGATG+TGG | + | chr1.2:27653122-27653141 | None:intergenic | 25.0% |
| ! | AAAATTTAAGAGTAACCCTA+AGG | + | chr1.2:27649311-27649330 | None:intergenic | 25.0% |
| ! | AAACAAATTAACTGTTGAGA+AGG | + | chr1.2:27649270-27649289 | None:intergenic | 25.0% |
| ! | AAATGTCTTCATCAATTAGT+AGG | + | chr1.2:27650841-27650860 | None:intergenic | 25.0% |
| ! | AAATTTCAGCAAGAAAATCA+AGG | - | chr1.2:27652752-27652771 | MS.gene073889:intron | 25.0% |
| ! | AATAGTCCAATAAATTGTGA+GGG | + | chr1.2:27649560-27649579 | None:intergenic | 25.0% |
| ! | AATCATCTTCAAATACAGAA+GGG | + | chr1.2:27651676-27651695 | None:intergenic | 25.0% |
| ! | ACATAAATAACCAACTACTT+TGG | + | chr1.2:27649339-27649358 | None:intergenic | 25.0% |
| ! | GTGGAATATATATATCTCTT+TGG | - | chr1.2:27649806-27649825 | MS.gene073889:intron | 25.0% |
| ! | TAATAGTCCAATAAATTGTG+AGG | + | chr1.2:27649561-27649580 | None:intergenic | 25.0% |
| ! | TATTAAGATAGATTGCAGAT+AGG | - | chr1.2:27650554-27650573 | MS.gene073889:CDS | 25.0% |
| ! | TCAAAAATTTGTGCACTAAT+TGG | + | chr1.2:27651155-27651174 | None:intergenic | 25.0% |
| ! | TCTTCTTTCCTCTATTTATA+TGG | - | chr1.2:27649583-27649602 | MS.gene073889:intron | 25.0% |
| ! | TCTTGTTCTTATCTTAGTAA+TGG | - | chr1.2:27651725-27651744 | MS.gene073889:intron | 25.0% |
| ! | TGTTAAAGAAGAAGATGATA+TGG | - | chr1.2:27653214-27653233 | MS.gene073889:intron | 25.0% |
| ! | TTACTAAGATAAGAACAAGA+AGG | + | chr1.2:27651725-27651744 | None:intergenic | 25.0% |
| ! | TTCTTGTGAATCAAAGATAA+TGG | + | chr1.2:27651447-27651466 | None:intergenic | 25.0% |
| !! | AGCATAATATTTTCTTTGAC+TGG | - | chr1.2:27649612-27649631 | MS.gene073889:intron | 25.0% |
| !! | ATTTTTACTTTGTATGTAGG+TGG | + | chr1.2:27652029-27652048 | None:intergenic | 25.0% |
| !! | CTTAGAAAATGACATTTTGA+TGG | + | chr1.2:27649722-27649741 | None:intergenic | 25.0% |
| !! | GGAAAGGTTGTTATTATTAT+TGG | + | chr1.2:27651426-27651445 | None:intergenic | 25.0% |
| !! | TATGTCTAAAATGACTATCA+AGG | + | chr1.2:27649773-27649792 | None:intergenic | 25.0% |
| !! | TATTTTCTTTTATAGGCACT+TGG | - | chr1.2:27652570-27652589 | MS.gene073889:intron | 25.0% |
| !! | TTAGGGTTACTCTTAAATTT+TGG | - | chr1.2:27649310-27649329 | MS.gene073889:intron | 25.0% |
| !! | TTTGCAAAGAATGATGATTT+TGG | - | chr1.2:27652920-27652939 | MS.gene073889:intron | 25.0% |
| !!! | AAAATGACATTTTGATGGTA+GGG | + | chr1.2:27649717-27649736 | None:intergenic | 25.0% |
| !!! | CAGTTAATTTGTTTGAAAAG+AGG | - | chr1.2:27649276-27649295 | MS.gene073889:intron | 25.0% |
| !!! | CATCAAAATGTCATTTTCTA+AGG | - | chr1.2:27649720-27649739 | MS.gene073889:CDS | 25.0% |
| !!! | GAAAAAATTGCATTTTTGGA+CGG | - | chr1.2:27650379-27650398 | MS.gene073889:intron | 25.0% |
| !!! | TGCAATTTTTTCAGTAGTAT+CGG | + | chr1.2:27650371-27650390 | None:intergenic | 25.0% |
| AATGGAAATTTGTCCTTCAA+TGG | + | chr1.2:27649970-27649989 | None:intergenic | 30.0% | |
| ACACAAGATTTGGATTATCA+AGG | - | chr1.2:27651842-27651861 | MS.gene073889:intron | 30.0% | |
| ACGTGATTCTCTATTCATTA+TGG | + | chr1.2:27651003-27651022 | None:intergenic | 30.0% | |
| ACTCATGTCTATCAACAAAA+AGG | - | chr1.2:27650947-27650966 | MS.gene073889:CDS | 30.0% | |
| AGAGAGTCTTGGAAAAAATT+AGG | + | chr1.2:27651188-27651207 | None:intergenic | 30.0% | |
| ATAGGATCAGTTTGATATTG+TGG | + | chr1.2:27651620-27651639 | None:intergenic | 30.0% | |
| ATCATACCTGAAAATCTTGA+GGG | + | chr1.2:27651916-27651935 | None:intergenic | 30.0% | |
| ATCTGCAAGTACAAAATGAA+AGG | + | chr1.2:27653191-27653210 | None:intergenic | 30.0% | |
| ATGGAAATTTGTCCTTCAAT+GGG | + | chr1.2:27649969-27649988 | None:intergenic | 30.0% | |
| ATGTCTAACATCAACATATG+TGG | + | chr1.2:27652474-27652493 | None:intergenic | 30.0% | |
| CAATCATCTTCAAATACAGA+AGG | + | chr1.2:27651677-27651696 | None:intergenic | 30.0% | |
| CATATACCCTCACAATTTAT+TGG | - | chr1.2:27649551-27649570 | MS.gene073889:intron | 30.0% | |
| CATTGAACCAATCATAAAGA+TGG | + | chr1.2:27652307-27652326 | None:intergenic | 30.0% | |
| CTAAGGGCAAAATAGTAAAA+TGG | - | chr1.2:27649737-27649756 | MS.gene073889:CDS | 30.0% | |
| CTATTGAACACATAAGGTTT+AGG | + | chr1.2:27651070-27651089 | None:intergenic | 30.0% | |
| CTCATGTCTATCAACAAAAA+GGG | - | chr1.2:27650948-27650967 | MS.gene073889:CDS | 30.0% | |
| CTTTCCTCTATTTATATGGT+TGG | - | chr1.2:27649587-27649606 | MS.gene073889:intron | 30.0% | |
| GAAAAATGACATATAGCATG+AGG | - | chr1.2:27649999-27650018 | MS.gene073889:intron | 30.0% | |
| GAAAAGACCATCTTTATGAT+TGG | - | chr1.2:27652297-27652316 | MS.gene073889:intron | 30.0% | |
| GAGAGTCTTGGAAAAAATTA+GGG | + | chr1.2:27651187-27651206 | None:intergenic | 30.0% | |
| GATGTTGTTAACATTGTTTG+TGG | + | chr1.2:27651390-27651409 | None:intergenic | 30.0% | |
| GCATTCTACATATAACTAGT+TGG | + | chr1.2:27650219-27650238 | None:intergenic | 30.0% | |
| TATTTATGTTAAACTCGGGA+TGG | - | chr1.2:27650440-27650459 | MS.gene073889:intron | 30.0% | |
| TCAAACTGATCCTATATCTT+CGG | - | chr1.2:27651625-27651644 | MS.gene073889:intron | 30.0% | |
| TCATGTCTATCAACAAAAAG+GGG | - | chr1.2:27650949-27650968 | MS.gene073889:CDS | 30.0% | |
| TCTTATCTTAGTAATGGCTT+AGG | - | chr1.2:27651731-27651750 | MS.gene073889:intron | 30.0% | |
| TCTTTCTCAATATGAACTAC+CGG | + | chr1.2:27650769-27650788 | None:intergenic | 30.0% | |
| TGTTAACATTGTTTGTGGTA+GGG | + | chr1.2:27651385-27651404 | None:intergenic | 30.0% | |
| TGTTAGACATTGATACATGT+TGG | - | chr1.2:27652484-27652503 | MS.gene073889:intron | 30.0% | |
| TGTTCTTGATGAGTTGTTAT+CGG | + | chr1.2:27651542-27651561 | None:intergenic | 30.0% | |
| TTACTTCATCTTCATCTTCA+TGG | + | chr1.2:27652973-27652992 | None:intergenic | 30.0% | |
| TTGACTGGAAACAAATAAGA+AGG | - | chr1.2:27649627-27649646 | MS.gene073889:intron | 30.0% | |
| TTGGATTATCAAGGTGAAAA+TGG | - | chr1.2:27651851-27651870 | MS.gene073889:intron | 30.0% | |
| TTGTTAACATTGTTTGTGGT+AGG | + | chr1.2:27651386-27651405 | None:intergenic | 30.0% | |
| ! | AGCTTGAGATATGTTGTTTA+AGG | + | chr1.2:27651282-27651301 | None:intergenic | 30.0% |
| ! | ATCGATCTCAATCTTTTTGA+TGG | + | chr1.2:27650629-27650648 | None:intergenic | 30.0% |
| ! | GGACGAATCAAATTTTGTAT+AGG | + | chr1.2:27650487-27650506 | None:intergenic | 30.0% |
| ! | TCATTTTACAATTGTTCTCG+AGG | - | chr1.2:27653034-27653053 | MS.gene073889:intron | 30.0% |
| ! | TGAGGGTATATGTATGTATA+TGG | + | chr1.2:27649543-27649562 | None:intergenic | 30.0% |
| ! | TGTTTTCTTCTTGACAATGA+AGG | - | chr1.2:27650269-27650288 | MS.gene073889:intron | 30.0% |
| ! | TTTTAACCCTCAAGATTTTC+AGG | - | chr1.2:27651907-27651926 | MS.gene073889:intron | 30.0% |
| !! | AAATGACATTTTGATGGTAG+GGG | + | chr1.2:27649716-27649735 | None:intergenic | 30.0% |
| !! | AATTTTGTTGTAGAGAGTCT+TGG | + | chr1.2:27651199-27651218 | None:intergenic | 30.0% |
| !! | ATCATCTTTCTGGTTTGAAA+GGG | - | chr1.2:27651591-27651610 | MS.gene073889:intron | 30.0% |
| !! | ATGATTTTGGAGAGAATCAT+AGG | - | chr1.2:27652933-27652952 | MS.gene073889:intron | 30.0% |
| !! | CTATATCAGAAGTGTACTTT+TGG | - | chr1.2:27652103-27652122 | MS.gene073889:intron | 30.0% |
| !! | GAAAATGACATTTTGATGGT+AGG | + | chr1.2:27649718-27649737 | None:intergenic | 30.0% |
| !! | GTGAATCAAAGATAATGGAA+AGG | + | chr1.2:27651442-27651461 | None:intergenic | 30.0% |
| !! | TATGAAAGTGTTCCTTTAAG+TGG | - | chr1.2:27649934-27649953 | MS.gene073889:intron | 30.0% |
| AGTCAGTCATTGTCCATAAT+TGG | + | chr1.2:27650185-27650204 | None:intergenic | 35.0% | |
| AGTGGTTATTCCTTTCTACT+AGG | + | chr1.2:27652228-27652247 | None:intergenic | 35.0% | |
| ATATGTAGAATGCCCCAATA+AGG | - | chr1.2:27650226-27650245 | MS.gene073889:intron | 35.0% | |
| ATCTATGCTTCATGTTTCGT+TGG | + | chr1.2:27650084-27650103 | None:intergenic | 35.0% | |
| CTATCAACAAAAAGGGGAAT+TGG | - | chr1.2:27650955-27650974 | MS.gene073889:CDS | 35.0% | |
| CTTGCCAACCATATAAATAG+AGG | + | chr1.2:27649594-27649613 | None:intergenic | 35.0% | |
| GAAAACTTTCTGTTGAGCAA+AGG | - | chr1.2:27652688-27652707 | MS.gene073889:intron | 35.0% | |
| GAACAAGAAGGAGAATAAGA+AGG | + | chr1.2:27651713-27651732 | None:intergenic | 35.0% | |
| GAGAATCACAAACTAGTATC+TGG | - | chr1.2:27652597-27652616 | MS.gene073889:intron | 35.0% | |
| GATAGTTGATCATCATGTGA+TGG | + | chr1.2:27649119-27649138 | None:intergenic | 35.0% | |
| GATATCTTTGCACATATCAG+TGG | - | chr1.2:27653248-27653267 | MS.gene073889:intron | 35.0% | |
| GATATGTGCAAAGATATCTG+AGG | + | chr1.2:27653246-27653265 | None:intergenic | 35.0% | |
| GATCATACCTGAAAATCTTG+AGG | + | chr1.2:27651917-27651936 | None:intergenic | 35.0% | |
| GATGGAATAGTTGCATTTGA+AGG | + | chr1.2:27653282-27653301 | None:intergenic | 35.0% | |
| GATTATCAAGGTGAAAATGG+TGG | - | chr1.2:27651854-27651873 | MS.gene073889:intron | 35.0% | |
| TGAAATGCAGACACAAGATT+TGG | - | chr1.2:27651832-27651851 | MS.gene073889:intron | 35.0% | |
| TTCAAACCAGAAAGATGATG+AGG | + | chr1.2:27651590-27651609 | None:intergenic | 35.0% | |
| TTGTACAGATTCTGTTCAAC+AGG | - | chr1.2:27651883-27651902 | MS.gene073889:intron | 35.0% | |
| ! | AGCAATATGCAAAGCCTTAT+TGG | + | chr1.2:27650243-27650262 | None:intergenic | 35.0% |
| !! | ACGTCATCGATTTGAAGTAT+CGG | - | chr1.2:27652516-27652535 | MS.gene073889:intron | 35.0% |
| !! | ATTTTGGTAGCCAAAGTAGT+TGG | - | chr1.2:27649326-27649345 | MS.gene073889:intron | 35.0% |
| !! | CAATATGCAAAGCCTTATTG+GGG | + | chr1.2:27650241-27650260 | None:intergenic | 35.0% |
| !! | CATCATCTTTCTGGTTTGAA+AGG | - | chr1.2:27651590-27651609 | MS.gene073889:intron | 35.0% |
| !! | GATAGTTCTAGCTTATTTGG+TGG | - | chr1.2:27651791-27651810 | MS.gene073889:intron | 35.0% |
| !! | GCAATATGCAAAGCCTTATT+GGG | + | chr1.2:27650242-27650261 | None:intergenic | 35.0% |
| !! | GCTGATAGTTCTAGCTTATT+TGG | - | chr1.2:27651788-27651807 | MS.gene073889:intron | 35.0% |
| !! | GTACTTTTGGTTAAAGCTCA+TGG | - | chr1.2:27652116-27652135 | MS.gene073889:intron | 35.0% |
| !! | TTTGATTTGGCCTAGTAGAA+AGG | - | chr1.2:27652215-27652234 | MS.gene073889:intron | 35.0% |
| !!! | AAAGAGGGTTGTTTTTCCTT+AGG | - | chr1.2:27649292-27649311 | MS.gene073889:intron | 35.0% |
| !!! | AAGAGGGTTGTTTTTCCTTA+GGG | - | chr1.2:27649293-27649312 | MS.gene073889:intron | 35.0% |
| AATGGCTTAGGTGTGTATCA+TGG | - | chr1.2:27651743-27651762 | MS.gene073889:intron | 40.0% | |
| ACACAACCTCATCATCTTTC+TGG | - | chr1.2:27651581-27651600 | MS.gene073889:intron | 40.0% | |
| ACCAGAAATTTCACACTTGG+AGG | - | chr1.2:27652647-27652666 | MS.gene073889:intron | 40.0% | |
| AGTTGATCATCATGTGATGG+AGG | + | chr1.2:27649116-27649135 | None:intergenic | 40.0% | |
| ATGAGTCTGATCTGATCACT+TGG | + | chr1.2:27650933-27650952 | None:intergenic | 40.0% | |
| CAAGGTTGAGGCAATTACAA+TGG | + | chr1.2:27649141-27649160 | None:intergenic | 40.0% | |
| GACATAGCTTTCAGTTCATG+TGG | - | chr1.2:27649787-27649806 | MS.gene073889:CDS | 40.0% | |
| GGGAATGAAAAGCCACTTAA+AGG | + | chr1.2:27649949-27649968 | None:intergenic | 40.0% | |
| GGTGTGTATCATGGAAATCT+TGG | - | chr1.2:27651752-27651771 | MS.gene073889:intron | 40.0% | |
| GTTATTATGCATGCATGCGT+TGG | - | chr1.2:27649202-27649221 | MS.gene073889:intron | 40.0% | |
| TATCGGACACTAACACGTAT+CGG | + | chr1.2:27650354-27650373 | None:intergenic | 40.0% | |
| TCCTCCAAGTGTGAAATTTC+TGG | + | chr1.2:27652651-27652670 | None:intergenic | 40.0% | |
| TGAGTTGTTATCGGAAGAAG+CGG | + | chr1.2:27651533-27651552 | None:intergenic | 40.0% | |
| TTTGGTGGAGGGATTCTATT+AGG | - | chr1.2:27651806-27651825 | MS.gene073889:intron | 40.0% | |
| ! | GAGGACTCTTCTTTGAAAGT+TGG | - | chr1.2:27652666-27652685 | MS.gene073889:intron | 40.0% |
| ! | GTTGATCATCATGTGATGGA+GGG | + | chr1.2:27649115-27649134 | None:intergenic | 40.0% |
| ! | GTTTTTATGTCACACACTGC+AGG | - | chr1.2:27651115-27651134 | MS.gene073889:CDS | 40.0% |
| ! | TGGCTTTTCATTCCCATTGA+AGG | - | chr1.2:27649954-27649973 | MS.gene073889:intron | 40.0% |
| !! | AGTTCTAGCTTATTTGGTGG+AGG | - | chr1.2:27651794-27651813 | MS.gene073889:intron | 40.0% |
| !! | GTTCTAGCTTATTTGGTGGA+GGG | - | chr1.2:27651795-27651814 | MS.gene073889:intron | 40.0% |
| !! | TGAAATTTCTGGTGCCAAAG+TGG | + | chr1.2:27652640-27652659 | None:intergenic | 40.0% |
| AGAACAAAGCCTTACTCCCA+CGG | + | chr1.2:27649664-27649683 | None:intergenic | 45.0% | |
| AGAAGGAATCAAAGACTCCG+TGG | - | chr1.2:27649644-27649663 | MS.gene073889:CDS | 45.0% | |
| CACAAACTAGTATCTGGTGC+TGG | - | chr1.2:27652603-27652622 | MS.gene073889:intron | 45.0% | |
| CTTGTGTTCGATGTTTGAGC+CGG | - | chr1.2:27650747-27650766 | MS.gene073889:CDS | 45.0% | |
| GAAGGAATCAAAGACTCCGT+GGG | - | chr1.2:27649645-27649664 | MS.gene073889:CDS | 45.0% | |
| GGCACCAGAAATTTCACACT+TGG | - | chr1.2:27652644-27652663 | MS.gene073889:intron | 45.0% | |
| TATGCATGCATGCGTTGGAA+TGG | - | chr1.2:27649207-27649226 | MS.gene073889:intron | 45.0% | |
| TCTTCATGGTTGCTACTACC+TGG | + | chr1.2:27652959-27652978 | None:intergenic | 45.0% | |
| TTTGGAGAGAATCATAGGCC+AGG | - | chr1.2:27652938-27652957 | MS.gene073889:intron | 45.0% | |
| ! | TGGAAGTTGTTCTGCCACTT+TGG | - | chr1.2:27652623-27652642 | MS.gene073889:intron | 45.0% |
| !! | GTAGGGGCATTGTCTTGAAT+AGG | + | chr1.2:27649700-27649719 | None:intergenic | 45.0% |
| GCAAACCTTCCTCTAACTCG+CGG | + | chr1.2:27652905-27652924 | None:intergenic | 50.0% | |
| GTTGTTATCGGAAGAAGCGG+CGG | + | chr1.2:27651530-27651549 | None:intergenic | 50.0% | |
| TCAAAGACTCCGTGGGAGTA+AGG | - | chr1.2:27649652-27649671 | MS.gene073889:CDS | 50.0% | |
| ! | GATCATCATGTGATGGAGGG+TGG | + | chr1.2:27649112-27649131 | None:intergenic | 50.0% |
| ! | GGGAGTGAAGCACTCATAAG+CGG | + | chr1.2:27651656-27651675 | None:intergenic | 50.0% |
| ACCTTCCTCTAACTCGCGGT+CGG | + | chr1.2:27652901-27652920 | None:intergenic | 55.0% | |
| TCTAACTCGCGGTCGGCTAT+CGG | + | chr1.2:27652894-27652913 | None:intergenic | 55.0% | |
| !! | AGCGGTGCTGCCGAAGATAT+AGG | + | chr1.2:27651638-27651657 | None:intergenic | 55.0% |
| GATAGCCGACCGCGAGTTAG+AGG | - | chr1.2:27652893-27652912 | MS.gene073889:intron | 60.0% | |
| GCCGACCGCGAGTTAGAGGA+AGG | - | chr1.2:27652897-27652916 | MS.gene073889:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.2 | gene | 27649092 | 27653316 | 27649092 | ID=MS.gene073889 |
| chr1.2 | mRNA | 27649092 | 27653316 | 27649092 | ID=MS.gene073889.t1;Parent=MS.gene073889 |
| chr1.2 | exon | 27653266 | 27653316 | 27653266 | ID=MS.gene073889.t1.exon1;Parent=MS.gene073889.t1 |
| chr1.2 | CDS | 27653266 | 27653316 | 27653266 | ID=cds.MS.gene073889.t1;Parent=MS.gene073889.t1 |
| chr1.2 | exon | 27650480 | 27651271 | 27650480 | ID=MS.gene073889.t1.exon2;Parent=MS.gene073889.t1 |
| chr1.2 | CDS | 27650480 | 27651271 | 27650480 | ID=cds.MS.gene073889.t1;Parent=MS.gene073889.t1 |
| chr1.2 | exon | 27649635 | 27649823 | 27649635 | ID=MS.gene073889.t1.exon3;Parent=MS.gene073889.t1 |
| chr1.2 | CDS | 27649635 | 27649823 | 27649635 | ID=cds.MS.gene073889.t1;Parent=MS.gene073889.t1 |
| chr1.2 | exon | 27649420 | 27649539 | 27649420 | ID=MS.gene073889.t1.exon4;Parent=MS.gene073889.t1 |
| chr1.2 | CDS | 27649420 | 27649539 | 27649420 | ID=cds.MS.gene073889.t1;Parent=MS.gene073889.t1 |
| chr1.2 | exon | 27649092 | 27649199 | 27649092 | ID=MS.gene073889.t1.exon5;Parent=MS.gene073889.t1 |
| chr1.2 | CDS | 27649092 | 27649199 | 27649092 | ID=cds.MS.gene073889.t1;Parent=MS.gene073889.t1 |
| Gene Sequence |
| Protein sequence |
