Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053444.t1 | RHN78664.1 | 94.6 | 369 | 17 | 2 | 1 | 367 | 13 | 380 | 3.30E-146 | 528.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053444.t1 | A0A396JN85 | 94.6 | 369 | 17 | 2 | 1 | 367 | 13 | 380 | 2.4e-146 | 528.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene053444.t1 | TR | Others |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene053444 | MS.gene073889 | 0.886719 | 2.68E-72 | -1.69E-46 |
| MS.gene053444 | MS.gene71017 | 0.985563 | 5.88E-164 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053444.t1 | MTR_1g073350 | 62.533 | 379 | 106 | 12 | 1 | 362 | 13 | 372 | 2.32e-138 | 400 |
| MS.gene053444.t1 | MTR_1g044785 | 95.897 | 195 | 6 | 1 | 175 | 367 | 1 | 195 | 2.12e-137 | 390 |
| MS.gene053444.t1 | MTR_2g068730 | 62.500 | 64 | 24 | 0 | 287 | 350 | 144 | 207 | 4.06e-22 | 94.7 |
| MS.gene053444.t1 | MTR_8g098725 | 67.797 | 59 | 19 | 0 | 292 | 350 | 211 | 269 | 2.36e-21 | 94.0 |
| MS.gene053444.t1 | MTR_8g098725 | 67.797 | 59 | 19 | 0 | 292 | 350 | 215 | 273 | 2.45e-21 | 94.0 |
| MS.gene053444.t1 | MTR_5g010120 | 51.064 | 94 | 38 | 2 | 279 | 364 | 142 | 235 | 1.61e-20 | 90.1 |
| MS.gene053444.t1 | MTR_4g061823 | 57.812 | 64 | 27 | 0 | 291 | 354 | 130 | 193 | 4.36e-19 | 85.9 |
| MS.gene053444.t1 | MTR_4g061910 | 57.812 | 64 | 27 | 0 | 291 | 354 | 130 | 193 | 4.36e-19 | 85.9 |
| MS.gene053444.t1 | MTR_2g096080 | 54.286 | 70 | 32 | 0 | 284 | 353 | 133 | 202 | 3.15e-18 | 83.6 |
| MS.gene053444.t1 | MTR_1g008220 | 64.583 | 48 | 17 | 0 | 304 | 351 | 230 | 277 | 6.01e-16 | 77.8 |
| MS.gene053444.t1 | MTR_3g091340 | 65.306 | 49 | 17 | 0 | 302 | 350 | 197 | 245 | 1.97e-15 | 75.5 |
| MS.gene053444.t1 | MTR_3g091340 | 65.306 | 49 | 17 | 0 | 302 | 350 | 190 | 238 | 2.03e-15 | 75.5 |
| MS.gene053444.t1 | MTR_3g091340 | 65.306 | 49 | 17 | 0 | 302 | 350 | 226 | 274 | 3.80e-15 | 75.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053444.t1 | AT1G04500 | 45.407 | 381 | 142 | 13 | 1 | 364 | 6 | 337 | 4.87e-86 | 265 |
| MS.gene053444.t1 | AT1G04500 | 45.407 | 381 | 142 | 13 | 1 | 364 | 15 | 346 | 6.58e-86 | 265 |
| MS.gene053444.t1 | AT1G04500 | 45.407 | 381 | 142 | 13 | 1 | 364 | 15 | 346 | 6.58e-86 | 265 |
| MS.gene053444.t1 | AT2G33350 | 45.646 | 379 | 148 | 13 | 1 | 356 | 6 | 349 | 3.45e-80 | 251 |
| MS.gene053444.t1 | AT2G33350 | 45.646 | 379 | 148 | 13 | 1 | 356 | 17 | 360 | 3.61e-80 | 251 |
| MS.gene053444.t1 | AT2G33350 | 45.646 | 379 | 148 | 13 | 1 | 356 | 26 | 369 | 9.56e-80 | 250 |
| MS.gene053444.t1 | AT2G33350 | 45.526 | 380 | 148 | 14 | 1 | 356 | 17 | 361 | 2.26e-78 | 246 |
| MS.gene053444.t1 | AT1G04500 | 42.151 | 344 | 133 | 13 | 1 | 327 | 15 | 309 | 3.26e-62 | 204 |
| MS.gene053444.t1 | AT2G33350 | 42.090 | 354 | 139 | 14 | 1 | 327 | 17 | 331 | 3.36e-58 | 192 |
| MS.gene053444.t1 | AT1G63820 | 45.968 | 124 | 58 | 2 | 249 | 367 | 134 | 253 | 3.95e-26 | 106 |
| MS.gene053444.t1 | AT5G41380 | 67.742 | 62 | 20 | 0 | 292 | 353 | 201 | 262 | 1.94e-23 | 99.4 |
| MS.gene053444.t1 | AT3G12890 | 60.563 | 71 | 28 | 0 | 297 | 367 | 130 | 200 | 9.27e-22 | 93.6 |
| MS.gene053444.t1 | AT5G53420 | 65.957 | 47 | 16 | 0 | 304 | 350 | 137 | 183 | 1.53e-15 | 74.7 |
| MS.gene053444.t1 | AT5G53420 | 65.957 | 47 | 16 | 0 | 304 | 350 | 137 | 183 | 1.53e-15 | 74.7 |
| MS.gene053444.t1 | AT5G53420 | 65.957 | 47 | 16 | 0 | 304 | 350 | 137 | 183 | 1.53e-15 | 74.7 |
| MS.gene053444.t1 | AT4G27900 | 62.500 | 48 | 18 | 0 | 304 | 351 | 212 | 259 | 1.99e-15 | 75.9 |
| MS.gene053444.t1 | AT4G27900 | 62.500 | 48 | 18 | 0 | 304 | 351 | 212 | 259 | 1.99e-15 | 75.9 |
| MS.gene053444.t1 | AT5G53420 | 65.957 | 47 | 16 | 0 | 304 | 350 | 216 | 262 | 2.93e-15 | 75.5 |
| MS.gene053444.t1 | AT5G59990 | 54.795 | 73 | 33 | 0 | 281 | 353 | 138 | 210 | 5.49e-14 | 71.2 |
Find 57 sgRNAs with CRISPR-Local
Find 81 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGCTTGAGATATGTTGTTTA+AGG | 0.115598 | 1.3:-26685184 | None:intergenic |
| GGAAAGGTTGTTATTATTAT+TGG | 0.150644 | 1.3:-26685328 | None:intergenic |
| ACACAACCTCATCATCTTTC+TGG | 0.167128 | 1.3:+26685486 | MS.gene053444:CDS |
| TTTGCAAAGAATGATGATTT+TGG | 0.213280 | 1.3:+26686825 | MS.gene053444:CDS |
| GCTGATAGTTCTAGCTTATT+TGG | 0.217917 | 1.3:+26685693 | MS.gene053444:CDS |
| TTACTTCATCTTCATCTTCA+TGG | 0.258336 | 1.3:-26686875 | None:intergenic |
| TTGGATTATCAAGGTGAAAA+TGG | 0.259352 | 1.3:+26685756 | MS.gene053444:CDS |
| TCCTCCAAGTGTGAAATTTC+TGG | 0.285986 | 1.3:-26686553 | None:intergenic |
| TTTGGTGGAGGGATTCTATT+AGG | 0.306595 | 1.3:+26685711 | MS.gene053444:CDS |
| TGAAATGCAGACACAAGATT+TGG | 0.326244 | 1.3:+26685737 | MS.gene053444:CDS |
| TTCTTGTGAATCAAAGATAA+TGG | 0.355504 | 1.3:-26685349 | None:intergenic |
| GATAGCCGACCGCGAGTTAG+AGG | 0.377396 | 1.3:+26686798 | MS.gene053444:CDS |
| TTGTACAGATTCTGTTCAAC+AGG | 0.388571 | 1.3:+26685788 | MS.gene053444:CDS |
| GAGGACTCTTCTTTGAAAGT+TGG | 0.400610 | 1.3:+26686571 | MS.gene053444:CDS |
| ATCATCTTTCTGGTTTGAAC+GGG | 0.407407 | 1.3:+26685496 | MS.gene053444:CDS |
| GAGAATCACAAACTAGTATC+TGG | 0.409472 | 1.3:+26686502 | MS.gene053444:CDS |
| TCTTGTTCTTATCTTAGTAA+TGG | 0.420390 | 1.3:+26685630 | MS.gene053444:CDS |
| CATCATCTTTCTGGTTTGAA+CGG | 0.423925 | 1.3:+26685495 | MS.gene053444:CDS |
| TTGTTAACATTGTTTGTGGT+AGG | 0.435899 | 1.3:-26685288 | None:intergenic |
| TGTTCTTGATGAGTTGTTAT+CGG | 0.437627 | 1.3:-26685444 | None:intergenic |
| TCTTCATGGTTGCTACTACC+TGG | 0.441983 | 1.3:-26686861 | None:intergenic |
| TCTTATCTTAGTAATGGCTT+AGG | 0.445374 | 1.3:+26685636 | MS.gene053444:CDS |
| ATAGGATCAGTTTGATATTG+TGG | 0.454553 | 1.3:-26685522 | None:intergenic |
| GATAGTTCTAGCTTATTTGG+TGG | 0.459834 | 1.3:+26685696 | MS.gene053444:CDS |
| TGGAAGTTGTTCTGCCACTT+TGG | 0.463869 | 1.3:+26686528 | MS.gene053444:CDS |
| ATCATACCTGAAATTCTTGA+GGG | 0.472005 | 1.3:-26685818 | None:intergenic |
| TCAAACTGATCCTATATCTT+CGG | 0.472302 | 1.3:+26685530 | MS.gene053444:CDS |
| GGTGTGTATCATGGAAATCT+TGG | 0.472409 | 1.3:+26685657 | MS.gene053444:CDS |
| GGCACCAGAAATTTCACACT+TGG | 0.479570 | 1.3:+26686549 | MS.gene053444:CDS |
| AGTTCTAGCTTATTTGGTGG+AGG | 0.485926 | 1.3:+26685699 | MS.gene053444:CDS |
| ACCAGAAATTTCACACTTGG+AGG | 0.486593 | 1.3:+26686552 | MS.gene053444:CDS |
| AGCGGTGCTGCCGAAGATAT+AGG | 0.487136 | 1.3:-26685540 | None:intergenic |
| ACACAAGATTTGGATTATCA+AGG | 0.487381 | 1.3:+26685747 | MS.gene053444:CDS |
| GAACAAGAAGGAGAATAAGA+AGG | 0.504833 | 1.3:-26685615 | None:intergenic |
| GATGTTGTTAACATTGTTTG+TGG | 0.505534 | 1.3:-26685292 | None:intergenic |
| CACAAACTAGTATCTGGTGC+TGG | 0.507442 | 1.3:+26686508 | MS.gene053444:CDS |
| GAAAACTTTCTGTTGAGCAA+AGG | 0.518365 | 1.3:+26686593 | MS.gene053444:CDS |
| TGTTAACATTGTTTGTGGTA+GGG | 0.519810 | 1.3:-26685287 | None:intergenic |
| TCTAACTCGCGGTCGGCTAT+CGG | 0.529354 | 1.3:-26686796 | None:intergenic |
| GATCATACCTGAAATTCTTG+AGG | 0.529369 | 1.3:-26685819 | None:intergenic |
| GATTATCAAGGTGAAAATGG+TGG | 0.531561 | 1.3:+26685759 | MS.gene053444:CDS |
| GTTCTAGCTTATTTGGTGGA+GGG | 0.546863 | 1.3:+26685700 | MS.gene053444:CDS |
| AATGGCTTAGGTGTGTATCA+TGG | 0.554708 | 1.3:+26685648 | MS.gene053444:CDS |
| TTTGGAGAGAATCATAGGCC+AGG | 0.559627 | 1.3:+26686843 | MS.gene053444:CDS |
| CAATCATCTTCAAATACAGA+AGG | 0.568846 | 1.3:-26685579 | None:intergenic |
| AAATTTCAGCAAGAAAATCA+AGG | 0.584947 | 1.3:+26686657 | MS.gene053444:CDS |
| GCCGACCGCGAGTTAGAGGA+AGG | 0.600682 | 1.3:+26686802 | MS.gene053444:CDS |
| TTACTAAGATAAGAACAAGA+AGG | 0.626377 | 1.3:-26685627 | None:intergenic |
| GTGAATCAAAGATAATGGAA+AGG | 0.627025 | 1.3:-26685344 | None:intergenic |
| TGAGTTGTTATCGGAAGAAG+CGG | 0.627559 | 1.3:-26685435 | None:intergenic |
| TGAAATTTCTGGTGCCAAAG+TGG | 0.631400 | 1.3:-26686542 | None:intergenic |
| GCAAACCTTCCTCTAACTCG+CGG | 0.633175 | 1.3:-26686807 | None:intergenic |
| AATCATCTTCAAATACAGAA+GGG | 0.635264 | 1.3:-26685578 | None:intergenic |
| GGGAGTGAAGCACTCATAAG+CGG | 0.643710 | 1.3:-26685558 | None:intergenic |
| TTCAAACCAGAAAGATGATG+AGG | 0.649919 | 1.3:-26685492 | None:intergenic |
| ACCTTCCTCTAACTCGCGGT+CGG | 0.662592 | 1.3:-26686803 | None:intergenic |
| GTTGTTATCGGAAGAAGCGG+CGG | 0.673069 | 1.3:-26685432 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAATTGTATTTTCTTTTAT+AGG | + | chr1.3:26686468-26686487 | MS.gene053444:intron | 10.0% |
| !!! | ATTAAAAAATACTTTTGATT+TGG | + | chr1.3:26686107-26686126 | MS.gene053444:intron | 10.0% |
| !! | TCTTATTATAGAAGATATTA+TGG | + | chr1.3:26685885-26685904 | MS.gene053444:intron | 15.0% |
| !!! | TTTTTATTATCAACTTAAAG+TGG | - | chr1.3:26686151-26686170 | None:intergenic | 15.0% |
| !! | AAATCAAGGAAAATTTAACA+AGG | - | chr1.3:26685866-26685885 | None:intergenic | 20.0% |
| !! | AATTGTTAAAAGATTAGAAG+AGG | + | chr1.3:26685985-26686004 | MS.gene053444:intron | 20.0% |
| !! | TCTTCTATAATAAGAAATCA+AGG | - | chr1.3:26685880-26685899 | None:intergenic | 20.0% |
| !!! | TCAATTTTTACTTTGTATGT+AGG | - | chr1.3:26685937-26685956 | None:intergenic | 20.0% |
| ! | AAATTTCAGCAAGAAAATCA+AGG | + | chr1.3:26686657-26686676 | MS.gene053444:CDS | 25.0% |
| ! | AATCATCTTCAAATACAGAA+GGG | - | chr1.3:26685581-26685600 | None:intergenic | 25.0% |
| ! | TCAAAAATTTGTGCACTAAT+TGG | - | chr1.3:26685060-26685079 | None:intergenic | 25.0% |
| ! | TCTTGTTCTTATCTTAGTAA+TGG | + | chr1.3:26685630-26685649 | MS.gene053444:CDS | 25.0% |
| ! | TTACTAAGATAAGAACAAGA+AGG | - | chr1.3:26685630-26685649 | None:intergenic | 25.0% |
| ! | TTCTTGTGAATCAAAGATAA+TGG | - | chr1.3:26685352-26685371 | None:intergenic | 25.0% |
| !! | ATTTTTACTTTGTATGTAGG+TGG | - | chr1.3:26685934-26685953 | None:intergenic | 25.0% |
| !! | GGAAAGGTTGTTATTATTAT+TGG | - | chr1.3:26685331-26685350 | None:intergenic | 25.0% |
| !! | TATTTTCTTTTATAGGCACT+TGG | + | chr1.3:26686475-26686494 | MS.gene053444:intron | 25.0% |
| !! | TTTGCAAAGAATGATGATTT+TGG | + | chr1.3:26686825-26686844 | MS.gene053444:CDS | 25.0% |
| ACACAAGATTTGGATTATCA+AGG | + | chr1.3:26685747-26685766 | MS.gene053444:CDS | 30.0% | |
| AGAGAGTCTTGGAAAAAATT+AGG | - | chr1.3:26685093-26685112 | None:intergenic | 30.0% | |
| ATAGGATCAGTTTGATATTG+TGG | - | chr1.3:26685525-26685544 | None:intergenic | 30.0% | |
| ATCATACCTGAAATTCTTGA+GGG | - | chr1.3:26685821-26685840 | None:intergenic | 30.0% | |
| ATGTCTAACATCAACATATG+TGG | - | chr1.3:26686379-26686398 | None:intergenic | 30.0% | |
| CAATCATCTTCAAATACAGA+AGG | - | chr1.3:26685582-26685601 | None:intergenic | 30.0% | |
| CATTGAACCAATCATAAAGA+TGG | - | chr1.3:26686212-26686231 | None:intergenic | 30.0% | |
| GAAAAGACCATCTTTATGAT+TGG | + | chr1.3:26686202-26686221 | MS.gene053444:intron | 30.0% | |
| GAGAGTCTTGGAAAAAATTA+GGG | - | chr1.3:26685092-26685111 | None:intergenic | 30.0% | |
| GATGTTGTTAACATTGTTTG+TGG | - | chr1.3:26685295-26685314 | None:intergenic | 30.0% | |
| TCAAACTGATCCTATATCTT+CGG | + | chr1.3:26685530-26685549 | MS.gene053444:CDS | 30.0% | |
| TCTTATCTTAGTAATGGCTT+AGG | + | chr1.3:26685636-26685655 | MS.gene053444:CDS | 30.0% | |
| TGTTAACATTGTTTGTGGTA+GGG | - | chr1.3:26685290-26685309 | None:intergenic | 30.0% | |
| TGTTAGACATTGATACATGT+TGG | + | chr1.3:26686389-26686408 | MS.gene053444:intron | 30.0% | |
| TGTTCTTGATGAGTTGTTAT+CGG | - | chr1.3:26685447-26685466 | None:intergenic | 30.0% | |
| TTGGATTATCAAGGTGAAAA+TGG | + | chr1.3:26685756-26685775 | MS.gene053444:CDS | 30.0% | |
| TTGTTAACATTGTTTGTGGT+AGG | - | chr1.3:26685291-26685310 | None:intergenic | 30.0% | |
| ! | AGCTTGAGATATGTTGTTTA+AGG | - | chr1.3:26685187-26685206 | None:intergenic | 30.0% |
| ! | TTTTAACCCTCAAGAATTTC+AGG | + | chr1.3:26685812-26685831 | MS.gene053444:CDS | 30.0% |
| !! | AATTTTGTTGTAGAGAGTCT+TGG | - | chr1.3:26685104-26685123 | None:intergenic | 30.0% |
| !! | ATGATTTTGGAGAGAATCAT+AGG | + | chr1.3:26686838-26686857 | MS.gene053444:CDS | 30.0% |
| !! | CTATATCAGAAGTGTACTTT+TGG | + | chr1.3:26686008-26686027 | MS.gene053444:intron | 30.0% |
| !! | GTGAATCAAAGATAATGGAA+AGG | - | chr1.3:26685347-26685366 | None:intergenic | 30.0% |
| AGTGGTTATTCCTTTCTACT+AGG | - | chr1.3:26686133-26686152 | None:intergenic | 35.0% | |
| GAAAACTTTCTGTTGAGCAA+AGG | + | chr1.3:26686593-26686612 | MS.gene053444:CDS | 35.0% | |
| GAACAAGAAGGAGAATAAGA+AGG | - | chr1.3:26685618-26685637 | None:intergenic | 35.0% | |
| GAGAATCACAAACTAGTATC+TGG | + | chr1.3:26686502-26686521 | MS.gene053444:CDS | 35.0% | |
| GATCATACCTGAAATTCTTG+AGG | - | chr1.3:26685822-26685841 | None:intergenic | 35.0% | |
| GATTATCAAGGTGAAAATGG+TGG | + | chr1.3:26685759-26685778 | MS.gene053444:CDS | 35.0% | |
| TGAAATGCAGACACAAGATT+TGG | + | chr1.3:26685737-26685756 | MS.gene053444:CDS | 35.0% | |
| TTCAAACCAGAAAGATGATG+AGG | - | chr1.3:26685495-26685514 | None:intergenic | 35.0% | |
| TTGTACAGATTCTGTTCAAC+AGG | + | chr1.3:26685788-26685807 | MS.gene053444:CDS | 35.0% | |
| !! | ACGTCATCGATTTGAAGTAT+CGG | + | chr1.3:26686421-26686440 | MS.gene053444:intron | 35.0% |
| !! | ATCATCTTTCTGGTTTGAAC+GGG | + | chr1.3:26685496-26685515 | MS.gene053444:CDS | 35.0% |
| !! | CATCATCTTTCTGGTTTGAA+CGG | + | chr1.3:26685495-26685514 | MS.gene053444:CDS | 35.0% |
| !! | GATAGTTCTAGCTTATTTGG+TGG | + | chr1.3:26685696-26685715 | MS.gene053444:CDS | 35.0% |
| !! | GCTGATAGTTCTAGCTTATT+TGG | + | chr1.3:26685693-26685712 | MS.gene053444:CDS | 35.0% |
| !! | GTACTTTTGGTTAAAGCTCA+TGG | + | chr1.3:26686021-26686040 | MS.gene053444:intron | 35.0% |
| !! | TTTGATTTGGCCTAGTAGAA+AGG | + | chr1.3:26686120-26686139 | MS.gene053444:intron | 35.0% |
| AATGGCTTAGGTGTGTATCA+TGG | + | chr1.3:26685648-26685667 | MS.gene053444:CDS | 40.0% | |
| ACACAACCTCATCATCTTTC+TGG | + | chr1.3:26685486-26685505 | MS.gene053444:CDS | 40.0% | |
| ACCAGAAATTTCACACTTGG+AGG | + | chr1.3:26686552-26686571 | MS.gene053444:CDS | 40.0% | |
| GGTGTGTATCATGGAAATCT+TGG | + | chr1.3:26685657-26685676 | MS.gene053444:CDS | 40.0% | |
| TCCTCCAAGTGTGAAATTTC+TGG | - | chr1.3:26686556-26686575 | None:intergenic | 40.0% | |
| TGAGTTGTTATCGGAAGAAG+CGG | - | chr1.3:26685438-26685457 | None:intergenic | 40.0% | |
| TTTGGTGGAGGGATTCTATT+AGG | + | chr1.3:26685711-26685730 | MS.gene053444:CDS | 40.0% | |
| ! | GAGGACTCTTCTTTGAAAGT+TGG | + | chr1.3:26686571-26686590 | MS.gene053444:CDS | 40.0% |
| !! | AGTTCTAGCTTATTTGGTGG+AGG | + | chr1.3:26685699-26685718 | MS.gene053444:CDS | 40.0% |
| !! | GTTCTAGCTTATTTGGTGGA+GGG | + | chr1.3:26685700-26685719 | MS.gene053444:CDS | 40.0% |
| !! | TGAAATTTCTGGTGCCAAAG+TGG | - | chr1.3:26686545-26686564 | None:intergenic | 40.0% |
| CACAAACTAGTATCTGGTGC+TGG | + | chr1.3:26686508-26686527 | MS.gene053444:CDS | 45.0% | |
| GGCACCAGAAATTTCACACT+TGG | + | chr1.3:26686549-26686568 | MS.gene053444:CDS | 45.0% | |
| TCTTCATGGTTGCTACTACC+TGG | - | chr1.3:26686864-26686883 | None:intergenic | 45.0% | |
| TTTGGAGAGAATCATAGGCC+AGG | + | chr1.3:26686843-26686862 | MS.gene053444:CDS | 45.0% | |
| ! | TGGAAGTTGTTCTGCCACTT+TGG | + | chr1.3:26686528-26686547 | MS.gene053444:CDS | 45.0% |
| GCAAACCTTCCTCTAACTCG+CGG | - | chr1.3:26686810-26686829 | None:intergenic | 50.0% | |
| GTTGTTATCGGAAGAAGCGG+CGG | - | chr1.3:26685435-26685454 | None:intergenic | 50.0% | |
| ! | GGGAGTGAAGCACTCATAAG+CGG | - | chr1.3:26685561-26685580 | None:intergenic | 50.0% |
| ACCTTCCTCTAACTCGCGGT+CGG | - | chr1.3:26686806-26686825 | None:intergenic | 55.0% | |
| TCTAACTCGCGGTCGGCTAT+CGG | - | chr1.3:26686799-26686818 | None:intergenic | 55.0% | |
| !! | AGCGGTGCTGCCGAAGATAT+AGG | - | chr1.3:26685543-26685562 | None:intergenic | 55.0% |
| GATAGCCGACCGCGAGTTAG+AGG | + | chr1.3:26686798-26686817 | MS.gene053444:CDS | 60.0% | |
| GCCGACCGCGAGTTAGAGGA+AGG | + | chr1.3:26686802-26686821 | MS.gene053444:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 26685042 | 26686893 | 26685042 | ID=MS.gene053444 |
| chr1.3 | mRNA | 26685042 | 26686893 | 26685042 | ID=MS.gene053444.t1;Parent=MS.gene053444 |
| chr1.3 | exon | 26685042 | 26685833 | 26685042 | ID=MS.gene053444.t1.exon1;Parent=MS.gene053444.t1 |
| chr1.3 | CDS | 26685042 | 26685833 | 26685042 | ID=cds.MS.gene053444.t1;Parent=MS.gene053444.t1 |
| chr1.3 | exon | 26686490 | 26686678 | 26686490 | ID=MS.gene053444.t1.exon2;Parent=MS.gene053444.t1 |
| chr1.3 | CDS | 26686490 | 26686678 | 26686490 | ID=cds.MS.gene053444.t1;Parent=MS.gene053444.t1 |
| chr1.3 | exon | 26686774 | 26686893 | 26686774 | ID=MS.gene053444.t1.exon3;Parent=MS.gene053444.t1 |
| chr1.3 | CDS | 26686774 | 26686893 | 26686774 | ID=cds.MS.gene053444.t1;Parent=MS.gene053444.t1 |
| Gene Sequence |
| Protein sequence |
