Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene073956.t1 | XP_024631004.1 | 94.4 | 840 | 40 | 3 | 1 | 839 | 1 | 834 | 0.00E+00 | 1568.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene073956.t1 | P19515 | 29.5 | 200 | 117 | 8 | 580 | 772 | 155 | 337 | 1.3e-14 | 83.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene073956.t1 | A0A396JKE1 | 92.7 | 861 | 50 | 4 | 1 | 860 | 1 | 849 | 0.0e+00 | 1567.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050105 | MS.gene073956 | 0.813779 | 2.15E-51 | -1.69E-46 |
| MS.gene050508 | MS.gene073956 | 0.833772 | 4.40E-56 | -1.69E-46 |
| MS.gene051983 | MS.gene073956 | 0.800085 | 1.70E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene073956.t1 | MTR_1g045930 | 96.062 | 838 | 26 | 3 | 1 | 837 | 1 | 832 | 0.0 | 1603 |
| MS.gene073956.t1 | MTR_2g020020 | 28.415 | 183 | 117 | 3 | 568 | 750 | 74 | 242 | 1.36e-14 | 76.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene073956.t1 | AT4G13550 | 56.061 | 858 | 333 | 12 | 2 | 841 | 1 | 832 | 0.0 | 916 |
| MS.gene073956.t1 | AT4G13550 | 56.359 | 857 | 324 | 13 | 2 | 837 | 1 | 828 | 0.0 | 915 |
| MS.gene073956.t1 | AT4G13550 | 57.763 | 760 | 292 | 7 | 95 | 837 | 49 | 796 | 0.0 | 857 |
| MS.gene073956.t1 | AT5G18640 | 33.766 | 154 | 85 | 4 | 594 | 745 | 100 | 238 | 1.08e-17 | 85.1 |
| MS.gene073956.t1 | AT5G18640 | 33.766 | 154 | 85 | 4 | 594 | 745 | 100 | 238 | 1.64e-17 | 85.9 |
| MS.gene073956.t1 | AT5G18640 | 33.766 | 154 | 85 | 4 | 594 | 745 | 100 | 238 | 1.64e-17 | 85.9 |
| MS.gene073956.t1 | AT5G18640 | 34.194 | 155 | 83 | 5 | 594 | 745 | 112 | 250 | 2.72e-17 | 85.1 |
| MS.gene073956.t1 | AT5G18640 | 34.194 | 155 | 83 | 5 | 594 | 745 | 112 | 250 | 2.72e-17 | 85.1 |
| MS.gene073956.t1 | AT5G18630 | 28.877 | 187 | 110 | 4 | 564 | 745 | 70 | 238 | 1.88e-15 | 78.2 |
| MS.gene073956.t1 | AT5G18630 | 31.847 | 157 | 84 | 4 | 594 | 745 | 101 | 239 | 3.27e-15 | 79.0 |
| MS.gene073956.t1 | AT5G18630 | 31.847 | 157 | 84 | 4 | 594 | 745 | 100 | 238 | 3.39e-15 | 78.6 |
| MS.gene073956.t1 | AT2G30550 | 30.233 | 301 | 138 | 16 | 563 | 802 | 191 | 480 | 5.66e-14 | 76.3 |
| MS.gene073956.t1 | AT2G30550 | 34.081 | 223 | 109 | 13 | 553 | 748 | 179 | 390 | 3.58e-13 | 73.2 |
| MS.gene073956.t1 | AT1G30370 | 32.558 | 172 | 92 | 6 | 590 | 748 | 235 | 395 | 2.22e-12 | 71.2 |
Find 183 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACAGGAAAATAAAGATATTT+TGG | 0.112258 | 1.1:-28738073 | MS.gene073956:intron |
| AAATCTCCACCTATCCTTTC+AGG | 0.153955 | 1.1:+28743744 | None:intergenic |
| ACGCCTTTCATCTTTCATTT+TGG | 0.161400 | 1.1:+28745718 | None:intergenic |
| TCCGATATTTCTGAGCTTTC+AGG | 0.174629 | 1.1:+28745875 | None:intergenic |
| ACCTACAATACCCCGGTTAA+TGG | 0.230357 | 1.1:-28739716 | MS.gene073956:CDS |
| CTGGAGTTCCTAAACAAAAT+TGG | 0.233638 | 1.1:-28745953 | MS.gene073956:CDS |
| AAAGATAGAAAGCGAAATTT+TGG | 0.252092 | 1.1:+28751018 | None:intergenic |
| AATCTTGCTGTTATTCTTGC+TGG | 0.254520 | 1.1:-28750865 | MS.gene073956:CDS |
| AAATGGCATATTTATGTTAC+TGG | 0.266430 | 1.1:-28742800 | MS.gene073956:CDS |
| ATTGAGGGCGCGTGGAGTTT+GGG | 0.292485 | 1.1:+28751076 | None:intergenic |
| TGTGACAATGAAACTGAAAA+TGG | 0.294260 | 1.1:-28746118 | MS.gene073956:CDS |
| AATTGAGGGCGCGTGGAGTT+TGG | 0.295487 | 1.1:+28751075 | None:intergenic |
| AAGTCTCCTACCCCAGAAAA+TGG | 0.303438 | 1.1:-28745620 | MS.gene073956:CDS |
| TTCACTAGAAGCTTCATTAG+AGG | 0.305353 | 1.1:+28746168 | None:intergenic |
| CAGGTTCACAGTGGCTTTCT+CGG | 0.308374 | 1.1:-28743609 | MS.gene073956:CDS |
| AGAACTTTCAGGTTGCAATT+TGG | 0.310411 | 1.1:-28745297 | MS.gene073956:intron |
| CGAATGCATATTCTACAAAT+TGG | 0.312700 | 1.1:+28746302 | None:intergenic |
| TTATGTTACTGGTCATAGTT+TGG | 0.318254 | 1.1:-28742789 | MS.gene073956:CDS |
| GGGGAATGCAGTCGTTGATT+TGG | 0.326384 | 1.1:-28747193 | MS.gene073956:CDS |
| CATGACAATAACCCATTAAC+CGG | 0.341967 | 1.1:+28739704 | None:intergenic |
| TCCTTCGGTAGAATCTTCTT+TGG | 0.346239 | 1.1:+28745676 | None:intergenic |
| GTTACGAAGGTGATGTTCTT+GGG | 0.347906 | 1.1:-28738044 | MS.gene073956:CDS |
| GAAGATATTTATATTGAATC+TGG | 0.349953 | 1.1:-28745908 | MS.gene073956:CDS |
| TGGGTAGTGGTGGAGAGGTT+TGG | 0.353635 | 1.1:-28746905 | MS.gene073956:CDS |
| AAATATGATATTGAAAGCTC+TGG | 0.368892 | 1.1:-28746223 | MS.gene073956:CDS |
| CCCATTAACCGGGGTATTGT+AGG | 0.371130 | 1.1:+28739715 | None:intergenic |
| TATGTTACTGGTCATAGTTT+GGG | 0.373760 | 1.1:-28742788 | MS.gene073956:CDS |
| CCTACAATACCCCGGTTAAT+GGG | 0.375088 | 1.1:-28739715 | MS.gene073956:CDS |
| TGGATCCATGGCGGGGAAGC+TGG | 0.375629 | 1.1:+28749004 | None:intergenic |
| CCATCCCACTTTAATTTCTC+AGG | 0.375798 | 1.1:+28745977 | None:intergenic |
| TCTGCACTCAGAAAGGTTAC+TGG | 0.380475 | 1.1:-28746346 | MS.gene073956:CDS |
| CTGATTGTTCCGTTGAATCT+TGG | 0.384022 | 1.1:+28750994 | None:intergenic |
| GGTTACGAAGGTGATGTTCT+TGG | 0.384990 | 1.1:-28738045 | MS.gene073956:CDS |
| GGGAAATCAAATAATAATAC+TGG | 0.388233 | 1.1:-28746202 | MS.gene073956:CDS |
| CTGCTAAAAGCAATATCAAA+TGG | 0.388724 | 1.1:-28748751 | MS.gene073956:CDS |
| GCCTGAAAGCTCAGAAATAT+CGG | 0.388795 | 1.1:-28745876 | MS.gene073956:CDS |
| AACTGAAAATGGACACGCTT+TGG | 0.389601 | 1.1:-28746107 | MS.gene073956:CDS |
| ATTCTACAAATTGGCTGACT+TGG | 0.407387 | 1.1:+28746311 | None:intergenic |
| TGCATTTCGCGGAACAGAAC+AGG | 0.408862 | 1.1:-28745245 | MS.gene073956:intron |
| TCTCTGATTCGACTTGCAAT+TGG | 0.411515 | 1.1:-28743555 | MS.gene073956:CDS |
| AACTCAGACTTGATGAAACT+TGG | 0.412460 | 1.1:+28745494 | None:intergenic |
| ACTCCCGCAGCAAGAAATAA+AGG | 0.417461 | 1.1:+28739673 | None:intergenic |
| GCTTCCCCGCCATGGATCCA+TGG | 0.420753 | 1.1:-28749001 | MS.gene073956:CDS |
| TGCTAAAAGCAATATCAAAT+GGG | 0.421313 | 1.1:-28748750 | MS.gene073956:CDS |
| TATATATTAGGTTGCAGCTT+GGG | 0.425739 | 1.1:-28747247 | MS.gene073956:intron |
| TAGTGGTGGAGAGGTTTGGC+TGG | 0.427191 | 1.1:-28746901 | MS.gene073956:CDS |
| CAATTTGTAGAATATGCATT+CGG | 0.427224 | 1.1:-28746301 | MS.gene073956:CDS |
| TAACATGTTTCAGGAAAACT+TGG | 0.427724 | 1.1:-28749484 | MS.gene073956:intron |
| TAACATAAATATGCCATTTG+TGG | 0.431363 | 1.1:+28742804 | None:intergenic |
| ACTGGTGGAGTTGGAAGGAA+TGG | 0.433714 | 1.1:-28746925 | MS.gene073956:CDS |
| CCCAGAAAATGGATCATTGT+TGG | 0.435596 | 1.1:-28745609 | MS.gene073956:CDS |
| AGGAGATACGCATGAAATAC+TGG | 0.441730 | 1.1:-28746943 | MS.gene073956:CDS |
| ATCACATTACTAGAGGTATA+TGG | 0.445678 | 1.1:-28737391 | MS.gene073956:intron |
| CATTCCCCATGCGTTTGTGA+GGG | 0.448852 | 1.1:+28747208 | None:intergenic |
| TATCCAGATGAAGGGTGAAA+TGG | 0.451496 | 1.1:-28737509 | MS.gene073956:intron |
| AATGTCACTGCCTACTCCTT+CGG | 0.455354 | 1.1:+28745661 | None:intergenic |
| GTTGCCCATCATAAATTTCA+CGG | 0.459115 | 1.1:+28749051 | None:intergenic |
| CTGAAAGTGCCATGGAGGCT+TGG | 0.460334 | 1.1:-28745544 | MS.gene073956:CDS |
| TTCATCATCAATTTCTTCAA+AGG | 0.468717 | 1.1:+28746426 | None:intergenic |
| CGCGTGGAGTTTGGGGTGTG+TGG | 0.473531 | 1.1:+28751084 | None:intergenic |
| AAGTGCTTACATGCAGCATA+TGG | 0.481981 | 1.1:-28737428 | MS.gene073956:CDS |
| AACTCGTTGACTATGACATC+TGG | 0.490407 | 1.1:+28738012 | None:intergenic |
| TCCGTATGTGGTCCTACAGA+TGG | 0.493689 | 1.1:-28748783 | MS.gene073956:CDS |
| CAACCTTTATTTCTTGCTGC+GGG | 0.494358 | 1.1:-28739676 | MS.gene073956:CDS |
| TGCGTTTGTGAGGGGTTACA+AGG | 0.495980 | 1.1:+28747217 | None:intergenic |
| GTGGAAAATTATAGTGAGGC+GGG | 0.497462 | 1.1:+28751040 | None:intergenic |
| GCATGAAATACTGGTGGAGT+TGG | 0.497752 | 1.1:-28746934 | MS.gene073956:CDS |
| ATGCAGTCGTTGATTTGGAA+TGG | 0.498501 | 1.1:-28747188 | MS.gene073956:CDS |
| GAAATTAAAGTGGGATGGAC+TGG | 0.499170 | 1.1:-28745972 | MS.gene073956:CDS |
| GAGTTGGAAGGAATGGGTAG+TGG | 0.504826 | 1.1:-28746918 | MS.gene073956:CDS |
| CCAACCCATGGATCCATGGC+GGG | 0.507394 | 1.1:+28748996 | None:intergenic |
| GGCGTGATTCTGCACGAAGA+AGG | 0.508396 | 1.1:-28745276 | MS.gene073956:CDS |
| CTTCCCCGCCATGGATCCAT+GGG | 0.509676 | 1.1:-28749000 | MS.gene073956:intron |
| TCATAGTTTGGGTGGTGCAT+TGG | 0.512489 | 1.1:-28742777 | MS.gene073956:CDS |
| CTCAGAAAGATAGATTGTCT+TGG | 0.515701 | 1.1:+28749434 | None:intergenic |
| TCATGCTTCTTAACCTGTAG+AGG | 0.516054 | 1.1:+28748233 | None:intergenic |
| TGGTGGAGAGGTTTGGCTGG+AGG | 0.518588 | 1.1:-28746898 | MS.gene073956:intron |
| TCGGTGCATATGATTCAGTA+AGG | 0.521878 | 1.1:-28743590 | MS.gene073956:CDS |
| CATTATCAGTATCAGACATC+CGG | 0.523680 | 1.1:+28746248 | None:intergenic |
| ATTCTGAGTTCATCCACAAA+TGG | 0.529548 | 1.1:-28742817 | MS.gene073956:CDS |
| ACAGCAAGATTGATATCAAA+CGG | 0.530051 | 1.1:+28750877 | None:intergenic |
| CTATCTTTACCAAGATTCAA+CGG | 0.531596 | 1.1:-28751003 | MS.gene073956:CDS |
| AATGGTGGTAACACTAGTAA+TGG | 0.532350 | 1.1:-28734251 | MS.gene073956:CDS |
| GATCTAATGCTTGTTCCAGC+CGG | 0.532979 | 1.1:-28745112 | MS.gene073956:CDS |
| CTGGTGGAGTTGGAAGGAAT+GGG | 0.535044 | 1.1:-28746924 | MS.gene073956:CDS |
| AGGATCCAGCTTCCCCGCCA+TGG | 0.535297 | 1.1:-28749009 | MS.gene073956:CDS |
| ATCTAATGCTTGTTCCAGCC+GGG | 0.535771 | 1.1:-28745111 | MS.gene073956:intron |
| AGGCGTGAAGTCGATGCTGC+TGG | 0.536960 | 1.1:-28749459 | MS.gene073956:CDS |
| TTGAGGGCGCGTGGAGTTTG+GGG | 0.537170 | 1.1:+28751077 | None:intergenic |
| TTTGGTGGAAAATTATAGTG+AGG | 0.537267 | 1.1:+28751036 | None:intergenic |
| TGCAGAAAGTGAAAGATAGC+TGG | 0.537699 | 1.1:-28739765 | MS.gene073956:intron |
| GCATTCCCCATGCGTTTGTG+AGG | 0.540231 | 1.1:+28747207 | None:intergenic |
| AGAAATGAATGTTACCCGGC+TGG | 0.540515 | 1.1:+28745097 | None:intergenic |
| TGAAAGTTCAAGAGCAAGCA+AGG | 0.541093 | 1.1:+28742751 | None:intergenic |
| GGGAAAGTGCGAGAAAATTG+AGG | 0.543885 | 1.1:+28751060 | None:intergenic |
| ATCAGAAGAAGAAGAAAGCA+AGG | 0.543924 | 1.1:-28750976 | MS.gene073956:CDS |
| GCTGGCGAATTGTGAATCAC+AGG | 0.546360 | 1.1:-28739747 | MS.gene073956:CDS |
| AATGGAGAAACAGAAGAGAA+TGG | 0.547724 | 1.1:-28734269 | MS.gene073956:CDS |
| GGAAAGTGCGAGAAAATTGA+GGG | 0.547750 | 1.1:+28751061 | None:intergenic |
| TGAAGACTGAATTGCAGCAA+TGG | 0.547909 | 1.1:+28745829 | None:intergenic |
| TTCAACTGCTGAAAGTGCCA+TGG | 0.548621 | 1.1:-28745552 | MS.gene073956:CDS |
| ACAATGCTGGCCACTTCACT+AGG | 0.554026 | 1.1:-28745521 | MS.gene073956:CDS |
| AATATGATATTGAAAGCTCT+GGG | 0.554154 | 1.1:-28746222 | MS.gene073956:CDS |
| CCGTATGTGGTCCTACAGAT+GGG | 0.554287 | 1.1:-28748782 | MS.gene073956:CDS |
| CAGCATTGTCCAAGCCTCCA+TGG | 0.555309 | 1.1:+28745535 | None:intergenic |
| GTATATATTAGGTTGCAGCT+TGG | 0.558618 | 1.1:-28747248 | MS.gene073956:intron |
| CCCATCTGTAGGACCACATA+CGG | 0.559591 | 1.1:+28748782 | None:intergenic |
| TTGGAAGGAATGGGTAGTGG+TGG | 0.560825 | 1.1:-28746915 | MS.gene073956:CDS |
| AGGAATGGGTAGTGGTGGAG+AGG | 0.561118 | 1.1:-28746910 | MS.gene073956:CDS |
| CATGGAGGCTTGGACAATGC+TGG | 0.561250 | 1.1:-28745534 | MS.gene073956:CDS |
| TGTAACCCCTCACAAACGCA+TGG | 0.561799 | 1.1:-28747214 | MS.gene073956:CDS |
| TAATGCATCCACTGATACAC+AGG | 0.563445 | 1.1:-28745450 | MS.gene073956:intron |
| GTAACCCCTCACAAACGCAT+GGG | 0.565128 | 1.1:-28747213 | MS.gene073956:CDS |
| AATGGAGAAACAGATGAGAA+TGG | 0.565597 | 1.1:-28734309 | MS.gene073956:CDS |
| CTATTACATCACATTACTAG+AGG | 0.566256 | 1.1:-28737398 | MS.gene073956:CDS |
| AAAAGAGCCAACATGGAATG+AGG | 0.569478 | 1.1:-28748291 | MS.gene073956:CDS |
| GCAGGACAAAAGAGCCAACA+TGG | 0.570719 | 1.1:-28748298 | MS.gene073956:intron |
| ATTTGCAGAGGTTTACAATG+AGG | 0.573302 | 1.1:-28741057 | MS.gene073956:intron |
| ACAACCAACCCATGGATCCA+TGG | 0.576145 | 1.1:+28748992 | None:intergenic |
| CCTGAGAAATTAAAGTGGGA+TGG | 0.577884 | 1.1:-28745977 | MS.gene073956:CDS |
| AATTTGTAGAATATGCATTC+GGG | 0.578887 | 1.1:-28746300 | MS.gene073956:CDS |
| GTGGTAACACTAGCTAGTAA+TGG | 0.579113 | 1.1:-28734287 | MS.gene073956:CDS |
| TTTCCAAAATGAAAGATGAA+AGG | 0.579507 | 1.1:-28745721 | MS.gene073956:CDS |
| GAAGATTCTACCGAAGGAGT+AGG | 0.580645 | 1.1:-28745671 | MS.gene073956:CDS |
| AGGTTAGTGATTGCATTTCG+CGG | 0.580731 | 1.1:-28745256 | MS.gene073956:CDS |
| GAAATACTGGTGGAGTTGGA+AGG | 0.584587 | 1.1:-28746930 | MS.gene073956:CDS |
| CACTTCCATCTCTGATTGAG+CGG | 0.584595 | 1.1:+28737446 | None:intergenic |
| ACCAAAGAAGATTCTACCGA+AGG | 0.588304 | 1.1:-28745677 | MS.gene073956:CDS |
| ATATTCCGCTCAATCAGAGA+TGG | 0.589383 | 1.1:-28737451 | MS.gene073956:CDS |
| AGGTGGAGATTTCAAGCAAG+AGG | 0.590239 | 1.1:-28743733 | MS.gene073956:CDS |
| TGGTAACAAAAGATTTGCAG+AGG | 0.591510 | 1.1:-28741069 | MS.gene073956:CDS |
| GTTACTGGTCATAGTTTGGG+TGG | 0.592963 | 1.1:-28742785 | MS.gene073956:CDS |
| ACAAAACACCTGTGTATCAG+TGG | 0.594569 | 1.1:+28745442 | None:intergenic |
| AGAAAATGGATCATTGTTGG+AGG | 0.594821 | 1.1:-28745606 | MS.gene073956:CDS |
| GTCGGCGATGAAACCTCTAC+AGG | 0.596911 | 1.1:-28748246 | MS.gene073956:intron |
| CTGTTCCTGAGAAATTAAAG+TGG | 0.597016 | 1.1:-28745982 | MS.gene073956:CDS |
| GCTAAAAGCAATATCAAATG+GGG | 0.600045 | 1.1:-28748749 | MS.gene073956:CDS |
| GTGAACTCCTCATTCCATGT+TGG | 0.601907 | 1.1:+28748284 | None:intergenic |
| GACTGAATTGCAGCAATGGA+AGG | 0.602286 | 1.1:+28745833 | None:intergenic |
| ATTCCCCATGCGTTTGTGAG+GGG | 0.602441 | 1.1:+28747209 | None:intergenic |
| GATTTGGAATGGCTTTGTGA+TGG | 0.603127 | 1.1:-28747177 | MS.gene073956:intron |
| CTGAATCCTGAAAGGATAGG+TGG | 0.603273 | 1.1:-28743750 | MS.gene073956:CDS |
| GGGAACAAGTGATCCGTATG+TGG | 0.604184 | 1.1:-28748795 | MS.gene073956:CDS |
| AGCATCACCACAAGCTAGTG+AGG | 0.604248 | 1.1:-28746083 | MS.gene073956:CDS |
| AACTCTTCCTCACTAGCTTG+TGG | 0.607610 | 1.1:+28746076 | None:intergenic |
| GCGAGAAAATTGAGGGCGCG+TGG | 0.608201 | 1.1:+28751068 | None:intergenic |
| TCAACCTTTATTTCTTGCTG+CGG | 0.608618 | 1.1:-28739677 | MS.gene073956:CDS |
| AATTCAGTCTTCACTTCCAG+AGG | 0.612033 | 1.1:-28745819 | MS.gene073956:CDS |
| TCCATAGGCTGAATCCTGAA+AGG | 0.612958 | 1.1:-28743758 | MS.gene073956:intron |
| GGTGGAAAATTATAGTGAGG+CGG | 0.615071 | 1.1:+28751039 | None:intergenic |
| ATGACAATAACCCATTAACC+GGG | 0.615546 | 1.1:+28739705 | None:intergenic |
| CTTTGATCTATCCAGATGAA+GGG | 0.618511 | 1.1:-28737517 | MS.gene073956:intron |
| CATATGATTCAGTAAGGACA+AGG | 0.620989 | 1.1:-28743584 | MS.gene073956:CDS |
| TGCTTACATGCAGCATATGG+AGG | 0.621537 | 1.1:-28737425 | MS.gene073956:CDS |
| TGTTTCAGGAAAACTTGGGT+AGG | 0.622383 | 1.1:-28749479 | MS.gene073956:intron |
| AACTGCTGAAAGTGCCATGG+AGG | 0.622432 | 1.1:-28745549 | MS.gene073956:CDS |
| TGTTCCTGAGAAATTAAAGT+GGG | 0.623964 | 1.1:-28745981 | MS.gene073956:CDS |
| CAACCCATGGATCCATGGCG+GGG | 0.628494 | 1.1:+28748997 | None:intergenic |
| CAGTCTGAGAACCCATCTGT+AGG | 0.630166 | 1.1:+28748771 | None:intergenic |
| TTACGAAGGTGATGTTCTTG+GGG | 0.631176 | 1.1:-28738043 | MS.gene073956:CDS |
| CTGGCGAATTGTGAATCACA+GGG | 0.633195 | 1.1:-28739746 | MS.gene073956:CDS |
| GGAGAAACAGATGAGAATGG+TGG | 0.633615 | 1.1:-28734306 | MS.gene073956:CDS |
| AAAGGCGTTCTTCTGAAGAG+AGG | 0.635261 | 1.1:-28745703 | MS.gene073956:CDS |
| TAAGAAGAAGACCTCATGTG+TGG | 0.647958 | 1.1:-28734168 | MS.gene073956:CDS |
| AACATGTTTCAGGAAAACTT+GGG | 0.647967 | 1.1:-28749483 | MS.gene073956:intron |
| GGAGAAACAGAAGAGAATGG+TGG | 0.648010 | 1.1:-28734266 | MS.gene073956:CDS |
| ATATCGGACAATAAAACAAG+TGG | 0.651446 | 1.1:-28745860 | MS.gene073956:CDS |
| TTCTAGTGAACAAAGAAACA+TGG | 0.651902 | 1.1:-28746155 | MS.gene073956:CDS |
| AGGCTGAATCCTGAAAGGAT+AGG | 0.652181 | 1.1:-28743753 | MS.gene073956:CDS |
| AGATCTTTGCAGGTTCACAG+TGG | 0.653410 | 1.1:-28743618 | MS.gene073956:intron |
| TCAATCAGATTCTAGCAATG+TGG | 0.654809 | 1.1:-28734210 | MS.gene073956:CDS |
| TAACCCCTCACAAACGCATG+GGG | 0.661460 | 1.1:-28747212 | MS.gene073956:CDS |
| GTTGACTATGACATCTGGTG+TGG | 0.664313 | 1.1:+28738017 | None:intergenic |
| GCAATGGAAGGACTTAGTAA+CGG | 0.676596 | 1.1:-28745134 | MS.gene073956:CDS |
| CTAAAAGCAATATCAAATGG+GGG | 0.678228 | 1.1:-28748748 | MS.gene073956:intron |
| ACCAACCCATGGATCCATGG+CGG | 0.678787 | 1.1:+28748995 | None:intergenic |
| CAGTCTTTACTCCACACATG+AGG | 0.679426 | 1.1:+28734157 | None:intergenic |
| AGATACGCATGAAATACTGG+TGG | 0.687029 | 1.1:-28746940 | MS.gene073956:CDS |
| ACTTGGATGACCTAGTGAAG+TGG | 0.714926 | 1.1:+28745511 | None:intergenic |
| ATATCATACCTACAATACCC+CGG | 0.723074 | 1.1:-28739723 | MS.gene073956:CDS |
| TGACAATAACCCATTAACCG+GGG | 0.739534 | 1.1:+28739706 | None:intergenic |
| GCAAGATTGATATCAAACGG+AGG | 0.744950 | 1.1:+28750880 | None:intergenic |
| TGTGTGGAGAGAGAACGTAA+CGG | 0.793230 | 1.1:+28751100 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 28734163 | 28751142 | 28734163 | ID=MS.gene073956 |
| chr1.1 | mRNA | 28734163 | 28751142 | 28734163 | ID=MS.gene073956.t1;Parent=MS.gene073956 |
| chr1.1 | exon | 28750834 | 28751142 | 28750834 | ID=MS.gene073956.t1.exon1;Parent=MS.gene073956.t1 |
| chr1.1 | CDS | 28750834 | 28751142 | 28750834 | ID=cds.MS.gene073956.t1;Parent=MS.gene073956.t1 |
| chr1.1 | exon | 28749435 | 28749493 | 28749435 | ID=MS.gene073956.t1.exon2;Parent=MS.gene073956.t1 |
| chr1.1 | CDS | 28749435 | 28749493 | 28749435 | ID=cds.MS.gene073956.t1;Parent=MS.gene073956.t1 |
| chr1.1 | exon | 28749001 | 28749082 | 28749001 | ID=MS.gene073956.t1.exon3;Parent=MS.gene073956.t1 |
| chr1.1 | CDS | 28749001 | 28749082 | 28749001 | ID=cds.MS.gene073956.t1;Parent=MS.gene073956.t1 |
| chr1.1 | exon | 28748749 | 28748816 | 28748749 | ID=MS.gene073956.t1.exon4;Parent=MS.gene073956.t1 |
| chr1.1 | CDS | 28748749 | 28748816 | 28748749 | ID=cds.MS.gene073956.t1;Parent=MS.gene073956.t1 |
| chr1.1 | exon | 28748247 | 28748316 | 28748247 | ID=MS.gene073956.t1.exon5;Parent=MS.gene073956.t1 |
| chr1.1 | CDS | 28748247 | 28748316 | 28748247 | ID=cds.MS.gene073956.t1;Parent=MS.gene073956.t1 |
| chr1.1 | exon | 28747178 | 28747259 | 28747178 | ID=MS.gene073956.t1.exon6;Parent=MS.gene073956.t1 |
| chr1.1 | CDS | 28747178 | 28747259 | 28747178 | ID=cds.MS.gene073956.t1;Parent=MS.gene073956.t1 |
| chr1.1 | exon | 28746899 | 28746963 | 28746899 | ID=MS.gene073956.t1.exon7;Parent=MS.gene073956.t1 |
| chr1.1 | CDS | 28746899 | 28746963 | 28746899 | ID=cds.MS.gene073956.t1;Parent=MS.gene073956.t1 |
| chr1.1 | exon | 28745451 | 28746461 | 28745451 | ID=MS.gene073956.t1.exon8;Parent=MS.gene073956.t1 |
| chr1.1 | CDS | 28745451 | 28746461 | 28745451 | ID=cds.MS.gene073956.t1;Parent=MS.gene073956.t1 |
| chr1.1 | exon | 28745246 | 28745308 | 28745246 | ID=MS.gene073956.t1.exon9;Parent=MS.gene073956.t1 |
| chr1.1 | CDS | 28745246 | 28745308 | 28745246 | ID=cds.MS.gene073956.t1;Parent=MS.gene073956.t1 |
| chr1.1 | exon | 28745112 | 28745158 | 28745112 | ID=MS.gene073956.t1.exon10;Parent=MS.gene073956.t1 |
| chr1.1 | CDS | 28745112 | 28745158 | 28745112 | ID=cds.MS.gene073956.t1;Parent=MS.gene073956.t1 |
| chr1.1 | exon | 28743728 | 28743773 | 28743728 | ID=MS.gene073956.t1.exon11;Parent=MS.gene073956.t1 |
| chr1.1 | CDS | 28743728 | 28743773 | 28743728 | ID=cds.MS.gene073956.t1;Parent=MS.gene073956.t1 |
| chr1.1 | exon | 28743549 | 28743628 | 28743549 | ID=MS.gene073956.t1.exon12;Parent=MS.gene073956.t1 |
| chr1.1 | CDS | 28743549 | 28743628 | 28743549 | ID=cds.MS.gene073956.t1;Parent=MS.gene073956.t1 |
| chr1.1 | exon | 28742734 | 28742847 | 28742734 | ID=MS.gene073956.t1.exon13;Parent=MS.gene073956.t1 |
| chr1.1 | CDS | 28742734 | 28742847 | 28742734 | ID=cds.MS.gene073956.t1;Parent=MS.gene073956.t1 |
| chr1.1 | exon | 28741058 | 28741139 | 28741058 | ID=MS.gene073956.t1.exon14;Parent=MS.gene073956.t1 |
| chr1.1 | CDS | 28741058 | 28741139 | 28741058 | ID=cds.MS.gene073956.t1;Parent=MS.gene073956.t1 |
| chr1.1 | exon | 28739657 | 28739782 | 28739657 | ID=MS.gene073956.t1.exon15;Parent=MS.gene073956.t1 |
| chr1.1 | CDS | 28739657 | 28739782 | 28739657 | ID=cds.MS.gene073956.t1;Parent=MS.gene073956.t1 |
| chr1.1 | exon | 28738011 | 28738091 | 28738011 | ID=MS.gene073956.t1.exon16;Parent=MS.gene073956.t1 |
| chr1.1 | CDS | 28738011 | 28738091 | 28738011 | ID=cds.MS.gene073956.t1;Parent=MS.gene073956.t1 |
| chr1.1 | exon | 28737392 | 28737524 | 28737392 | ID=MS.gene073956.t1.exon17;Parent=MS.gene073956.t1 |
| chr1.1 | CDS | 28737392 | 28737524 | 28737392 | ID=cds.MS.gene073956.t1;Parent=MS.gene073956.t1 |
| chr1.1 | exon | 28734163 | 28734332 | 28734163 | ID=MS.gene073956.t1.exon18;Parent=MS.gene073956.t1 |
| chr1.1 | CDS | 28734163 | 28734332 | 28734163 | ID=cds.MS.gene073956.t1;Parent=MS.gene073956.t1 |
| Gene Sequence |
| Protein sequence |
