AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene051983


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene051983.t1 MTR_2g099410 96.316 190 7 0 1 190 47 236 1.61e-129 366
MS.gene051983.t1 MTR_2g099410 79.167 48 10 0 191 238 105 152 9.22e-16 74.7
MS.gene051983.t1 MTR_4g064917 34.659 176 103 3 2 174 76 242 5.23e-24 97.1
MS.gene051983.t1 MTR_1g031110 27.160 162 109 2 3 161 36 191 3.08e-18 80.9
MS.gene051983.t1 MTR_3g079890 27.160 162 109 2 3 161 40 195 4.26e-18 80.9
MS.gene051983.t1 MTR_1g068960 34.444 90 59 0 79 168 485 574 4.66e-12 65.5
MS.gene051983.t1 MTR_8g103480 28.947 114 77 2 43 156 49 158 4.01e-11 62.8
MS.gene051983.t1 MTR_7g011500 30.282 142 84 4 78 215 583 713 6.08e-11 62.4
MS.gene051983.t1 MTR_3g114700 29.661 118 82 1 36 153 243 359 6.57e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene051983.t1 AT3G46870 34.091 176 104 3 2 174 72 238 3.62e-22 92.0
MS.gene051983.t1 AT3G46870 31.915 188 104 4 2 174 72 250 8.06e-19 83.2
MS.gene051983.t1 AT5G09315 28.571 203 120 4 2 185 54 250 2.78e-18 81.6
MS.gene051983.t1 AT1G62350 27.160 162 109 2 3 161 1 156 9.24e-14 68.2
MS.gene051983.t1 AT1G62350 27.160 162 109 2 3 161 57 212 3.67e-13 67.4
MS.gene051983.t1 AT3G18110 27.717 184 123 3 67 241 743 925 3.29e-12 66.2
MS.gene051983.t1 AT3G04760 29.054 148 98 2 36 180 189 332 6.16e-11 62.4
MS.gene051983.t1 AT2G15630 27.907 172 108 5 79 238 435 602 7.45e-11 62.0

Find 52 sgRNAs with CRISPR-Local

Find 153 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATAACTTGAACGCTTTCTT+TGG 0.235310 2.2:-3519738 None:intergenic
ACTTTCTGAACAAATTTATC+AGG 0.290581 2.2:-3521866 None:intergenic
TACAGATCCATGAAGGCTTC+AGG 0.306225 2.2:+3521731 MS.gene051983:CDS
TCATTGAACAACCTCGTATC+TGG 0.321501 2.2:-3521656 None:intergenic
TTCAATCGGGTGGTTGAAAC+TGG 0.331042 2.2:+3522899 MS.gene051983:CDS
CAAACACCCTGAAGCCTTCA+TGG 0.358156 2.2:-3521738 None:intergenic
TGACATTCACTATACTGATT+AGG 0.360015 2.2:+3521771 MS.gene051983:CDS
ATTAGGAATCTAATGAATAA+TGG 0.372286 2.2:+3521788 MS.gene051983:CDS
TTCTGACACTATATTGTTGC+TGG 0.386533 2.2:+3521568 MS.gene051983:CDS
TTCAATCAAGTTGTGGAAAA+GGG 0.393035 2.2:+3521626 MS.gene051983:CDS
GAAGGCTTCAGGGTGTTTGC+CGG 0.397835 2.2:+3521742 MS.gene051983:CDS
GGTTGTTCAATGAGATGATC+GGG 0.409297 2.2:+3521666 MS.gene051983:CDS
GCCAAGACAATTAAAACATC+AGG 0.410998 2.2:-3519839 None:intergenic
GTTCAATCAAGTTGTGGAAA+AGG 0.412536 2.2:+3521625 MS.gene051983:CDS
AGGAAGCTGGGTATGATAAA+TGG 0.414897 2.2:+3521531 MS.gene051983:CDS
TTATTTGCAAGTTGGTAATA+CGG 0.445470 2.2:+3521691 MS.gene051983:CDS
TTCTCAAGTCTAAATTGCTT+AGG 0.453872 2.2:+3519807 MS.gene051983:CDS
GCAATTTAGACTTGAGAACT+TGG 0.462867 2.2:-3519802 None:intergenic
ATTATCAGTGATGAGGAAGC+TGG 0.464498 2.2:+3521518 MS.gene051983:CDS
GAAAACTCACATGTTTCAGC+TGG 0.472944 2.2:-3521889 None:intergenic
ACAGATCCATGAAGGCTTCA+GGG 0.478380 2.2:+3521732 MS.gene051983:CDS
TTCTGACATGATACTGTTGT+TGG 0.482914 2.2:+3522841 MS.gene051983:CDS
AGCAGGATATGATACATTGC+TGG 0.484807 2.2:+3522808 MS.gene051983:CDS
TGGCAGAAGAGATGTTCAAT+CGG 0.498409 2.2:+3522885 MS.gene051983:CDS
ATCGGGGTTTATTTGCAAGT+TGG 0.501108 2.2:+3521683 MS.gene051983:CDS
ATAGTGAATGTCAATGAATC+CGG 0.502047 2.2:-3521761 None:intergenic
GAATAATGGAGAACATGAAC+TGG 0.504471 2.2:+3521802 MS.gene051983:CDS
ATTATTAGTGATGAGGAAGC+AGG 0.523985 2.2:+3522791 MS.gene051983:CDS
CCTTGAGAGATAAATGGAGT+TGG 0.528634 2.2:-3519880 None:intergenic
TCTGACATGATACTGTTGTT+GGG 0.538800 2.2:+3522842 MS.gene051983:CDS
AGAGCTTATTATTAGTGATG+AGG 0.540145 2.2:+3522784 MS.gene051983:CDS
AGGTTGTTCAATGAGATGAT+CGG 0.544532 2.2:+3521665 MS.gene051983:CDS
GGCAGAAGAGATGTTCAATC+GGG 0.546816 2.2:+3522886 MS.gene051983:CDS
TCTGACACTATATTGTTGCT+GGG 0.554494 2.2:+3521569 MS.gene051983:CDS
CCAACTCCATTTATCTCTCA+AGG 0.557133 2.2:+3519880 MS.gene051983:CDS
TGGTAATACGGAGAAGGCGA+TGG 0.560110 2.2:+3521703 MS.gene051983:CDS
CGAGTTTATTATCAGTGATG+AGG 0.571726 2.2:+3521511 MS.gene051983:CDS
GCAAGTTGGTAATACGGAGA+AGG 0.574234 2.2:+3521697 MS.gene051983:CDS
AGAGATGTTCAATCAAGTTG+TGG 0.585094 2.2:+3521619 MS.gene051983:CDS
GGAGGTTTACAGATCCATGA+AGG 0.589588 2.2:+3521724 MS.gene051983:CDS
TCAATCAAGTTGTGGAAAAG+GGG 0.591104 2.2:+3521627 MS.gene051983:CDS
TTATCAGTGATGAGGAAGCT+GGG 0.593218 2.2:+3521519 MS.gene051983:CDS
AAAGAACAAGATGATTGAGA+TGG 0.594568 2.2:+3521592 MS.gene051983:CDS
GAACAAGATGATTGAGATGG+CGG 0.602226 2.2:+3521595 MS.gene051983:CDS
AAGGAACAAGATGATTGAGA+TGG 0.616432 2.2:+3522865 MS.gene051983:CDS
AGAAGAGATGTTCAATCGGG+TGG 0.626222 2.2:+3522889 MS.gene051983:CDS
TAATACGGAGAAGGCGATGG+AGG 0.641911 2.2:+3521706 MS.gene051983:CDS
ACATGATACTGTTGTTGGGA+AGG 0.647551 2.2:+3522846 MS.gene051983:CDS
AATATAGTGTCAGAATACAA+TGG 0.656425 2.2:-3521560 None:intergenic
GTTGTTCAATGAGATGATCG+GGG 0.665655 2.2:+3521667 MS.gene051983:CDS
GGTGGTTGAAACTGGAAACG+AGG 0.718348 2.2:+3522907 MS.gene051983:CDS
AGGGGTTGAAACCAGATACG+AGG 0.767064 2.2:+3521645 MS.gene051983:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATATTAATAACAATGAGAA+AGG + chr2.2:3522329-3522348 MS.gene051983:intron 15.0%
!! ATATTAATAACAATGAGAAA+GGG + chr2.2:3522330-3522349 MS.gene051983:intron 15.0%
!!! TTTCAATTATATTGATGATT+TGG - chr2.2:3522542-3522561 None:intergenic 15.0%
!! AATAATTTGATCATAGTTGA+CGG + chr2.2:3520559-3520578 MS.gene051983:intron 20.0%
!! ACAATTTGAGAAAATACAAA+TGG - chr2.2:3522626-3522645 None:intergenic 20.0%
!! ATAAGATAATAGTTTGACAT+TGG - chr2.2:3520883-3520902 None:intergenic 20.0%
!! ATTAGGAATCTAATGAATAA+TGG + chr2.2:3521788-3521807 MS.gene051983:CDS 20.0%
!! GCTAGAAAATTATTTCATAT+AGG + chr2.2:3521162-3521181 MS.gene051983:intron 20.0%
!! GCTAGAAAATTATTTCATTT+AGG + chr2.2:3520514-3520533 MS.gene051983:intron 20.0%
!! TAACTTATATGAAAATGAGA+TGG + chr2.2:3520117-3520136 MS.gene051983:intron 20.0%
!! TTCATTATTAATTGAAGCAT+AGG + chr2.2:3522757-3522776 MS.gene051983:intron 20.0%
!!! GATATCATTTTCTATAAGAA+CGG - chr2.2:3520461-3520480 None:intergenic 20.0%
!!! GTATTTTCTCAAATTGTTTT+TGG + chr2.2:3522629-3522648 MS.gene051983:intron 20.0%
!!! TTATGCACTTATTTTATTTG+AGG + chr2.2:3519978-3519997 MS.gene051983:intron 20.0%
! AAATTTGTAGTGTCTTGTAT+GGG + chr2.2:3521959-3521978 MS.gene051983:intron 25.0%
! AATAATTTGATCGTAGTTGA+AGG + chr2.2:3521207-3521226 MS.gene051983:intron 25.0%
! AATATAGTGTCAGAATACAA+TGG - chr2.2:3521563-3521582 None:intergenic 25.0%
! ACTGACACTTAAAAGATTAA+AGG + chr2.2:3520608-3520627 MS.gene051983:intron 25.0%
! ACTTTCTGAACAAATTTATC+AGG - chr2.2:3521869-3521888 None:intergenic 25.0%
! AGTACAAATGATCTTATCAA+CGG - chr2.2:3522300-3522319 None:intergenic 25.0%
! CAACAAGCATAAAAGTAATT+TGG - chr2.2:3522171-3522190 None:intergenic 25.0%
! CAGTACTACTTAATACTTAT+AGG - chr2.2:3520592-3520611 None:intergenic 25.0%
! CTTAAAAGATTAAAGGTCTT+AGG + chr2.2:3520615-3520634 MS.gene051983:intron 25.0%
! GATTAAAGGTCTTAAGAATT+AGG + chr2.2:3521263-3521282 MS.gene051983:intron 25.0%
! TAAATTTGTAGTGTCTTGTA+TGG + chr2.2:3521958-3521977 MS.gene051983:intron 25.0%
! TAGTTAGAATTATTAGCTAC+TGG - chr2.2:3521433-3521452 None:intergenic 25.0%
! TTTCCTTATTGCGAAAATAA+TGG + chr2.2:3522390-3522409 MS.gene051983:intron 25.0%
!! ATGTGAGTTTTCAAATTGTA+TGG + chr2.2:3521900-3521919 MS.gene051983:intron 25.0%
!! GGATTTGATAATTGTAACAT+AGG + chr2.2:3521484-3521503 MS.gene051983:intron 25.0%
!! TTCATTTTCATCATTTCTAC+TGG + chr2.2:3522100-3522119 MS.gene051983:intron 25.0%
!! TTTTTACCTTGAGAGATAAA+TGG - chr2.2:3519889-3519908 None:intergenic 25.0%
!!! AGTTTGATATTGACTTTGTT+TGG - chr2.2:3520225-3520244 None:intergenic 25.0%
!!! ATATTGACTTTGTTTGGAAT+TGG - chr2.2:3520219-3520238 None:intergenic 25.0%
!!! CAAATTACTTTTATGCTTGT+TGG + chr2.2:3522169-3522188 MS.gene051983:intron 25.0%
!!! GCTTTTTTCATAAGTTATTC+TGG + chr2.2:3520264-3520283 MS.gene051983:intron 25.0%
!!! TTATTTGCAAGTTGGTAATA+CGG + chr2.2:3521691-3521710 MS.gene051983:CDS 25.0%
!!! TTGTTTCTAATAAGCTATCT+AGG + chr2.2:3520069-3520088 MS.gene051983:intron 25.0%
AAAGAACAAGATGATTGAGA+TGG + chr2.2:3521592-3521611 MS.gene051983:CDS 30.0%
AATAACTTGAACGCTTTCTT+TGG - chr2.2:3519741-3519760 None:intergenic 30.0%
AATAAGCTGAAAACTACTCA+CGG + chr2.2:3520299-3520318 MS.gene051983:intron 30.0%
ACAAGTTGCAAACAACTTAT+AGG - chr2.2:3520053-3520072 None:intergenic 30.0%
AGAGCTTATTATTAGTGATG+AGG + chr2.2:3522784-3522803 MS.gene051983:CDS 30.0%
AGCATCACTAGTATATAGAT+TGG - chr2.2:3522274-3522293 None:intergenic 30.0%
AGTTAGTCACTAGTGTAATT+AGG - chr2.2:3520416-3520435 None:intergenic 30.0%
ATAGTGAATGTCAATGAATC+CGG - chr2.2:3521764-3521783 None:intergenic 30.0%
ATCACAATTAAAACCCTGTT+TGG + chr2.2:3519908-3519927 MS.gene051983:intron 30.0%
ATTAAAACCCTGTTTGGTTA+AGG + chr2.2:3519914-3519933 MS.gene051983:intron 30.0%
ATTAAAGGTCTTAGGATTGA+AGG + chr2.2:3520623-3520642 MS.gene051983:intron 30.0%
CAACAGAACTTCTAATTAGT+TGG - chr2.2:3521131-3521150 None:intergenic 30.0%
CAAGTACATCACAAACTATA+AGG - chr2.2:3521938-3521957 None:intergenic 30.0%
CTAATTAGGGTTGTTTGAAT+TGG - chr2.2:3521050-3521069 None:intergenic 30.0%
GAAGGATATTAACCTATATG+TGG + chr2.2:3521225-3521244 MS.gene051983:intron 30.0%
GAGAAAATACAAATGGTTGA+AGG - chr2.2:3522619-3522638 None:intergenic 30.0%
GTCTTAAGAATTAGGATTGA+AGG + chr2.2:3521271-3521290 MS.gene051983:intron 30.0%
GTTAGTCACTAGTGTAATTA+GGG - chr2.2:3520415-3520434 None:intergenic 30.0%
TACATCAATACAACCGAAAT+TGG - chr2.2:3522204-3522223 None:intergenic 30.0%
TATCTAATTTCCTGCATTGA+TGG + chr2.2:3522060-3522079 MS.gene051983:intron 30.0%
TATTACTGGTGTTTATGTGT+GGG + chr2.2:3521335-3521354 MS.gene051983:intron 30.0%
TTCTAATAAGCTATCTAGGA+CGG + chr2.2:3520073-3520092 MS.gene051983:intron 30.0%
TTCTCAAGTCTAAATTGCTT+AGG + chr2.2:3519807-3519826 MS.gene051983:CDS 30.0%
! AACTTGGTTGAGTTTTTCTT+CGG - chr2.2:3519789-3519808 None:intergenic 30.0%
! ACACCATTATTTTCGCAATA+AGG - chr2.2:3522396-3522415 None:intergenic 30.0%
! ACCTTTAATCTTTCAAGTGT+CGG - chr2.2:3521253-3521272 None:intergenic 30.0%
! AGTTAGTCACTAGTCTAATT+AGG - chr2.2:3521064-3521083 None:intergenic 30.0%
! ATCTAATTTCCTGCATTGAT+GGG + chr2.2:3522061-3522080 MS.gene051983:intron 30.0%
! ATTTTCATCATTTCTACTGG+AGG + chr2.2:3522103-3522122 MS.gene051983:intron 30.0%
! GTTAGTCACTAGTCTAATTA+GGG - chr2.2:3521063-3521082 None:intergenic 30.0%
! TGACATTCACTATACTGATT+AGG + chr2.2:3521771-3521790 MS.gene051983:CDS 30.0%
! TTCAATCAAGTTGTGGAAAA+GGG + chr2.2:3521626-3521645 MS.gene051983:CDS 30.0%
!! ATTACTTTTATGCTTGTTGG+CGG + chr2.2:3522172-3522191 MS.gene051983:intron 30.0%
!! TAATGGTGTAGAATTTTAGC+TGG + chr2.2:3522407-3522426 MS.gene051983:intron 30.0%
AAAAAAGAGACACGTCAATC+TGG + chr2.2:3522036-3522055 MS.gene051983:intron 35.0%
AAGGAACAAGATGATTGAGA+TGG + chr2.2:3522865-3522884 MS.gene051983:CDS 35.0%
ACAGACATAGAAATGATCGA+AGG - chr2.2:3520685-3520704 None:intergenic 35.0%
ACCGACACTTGAAAGATTAA+AGG + chr2.2:3521249-3521268 MS.gene051983:intron 35.0%
AGGTTGTTCAATGAGATGAT+CGG + chr2.2:3521665-3521684 MS.gene051983:CDS 35.0%
ATGTAGTGTGTGAATGTGAT+AGG + chr2.2:3522219-3522238 MS.gene051983:intron 35.0%
ATTATTAGTGATGAGGAAGC+AGG + chr2.2:3522791-3522810 MS.gene051983:CDS 35.0%
CAGCAGAACTTCTAATTAGT+TGG - chr2.2:3520483-3520502 None:intergenic 35.0%
CATAACCCATCCTAGTTAAT+TGG - chr2.2:3520753-3520772 None:intergenic 35.0%
CGAGTTTATTATCAGTGATG+AGG + chr2.2:3521511-3521530 MS.gene051983:CDS 35.0%
GAAATTGTAGCTCAAATGTC+TGG - chr2.2:3522149-3522168 None:intergenic 35.0%
GCAATTTAGACTTGAGAACT+TGG - chr2.2:3519805-3519824 None:intergenic 35.0%
GCCAAGACAATTAAAACATC+AGG - chr2.2:3519842-3519861 None:intergenic 35.0%
GCTTAAACCTTAACCAAACA+GGG - chr2.2:3519924-3519943 None:intergenic 35.0%
GTATTACTGGTGTTTATGTG+TGG + chr2.2:3521334-3521353 MS.gene051983:intron 35.0%
TCTGACACTATATTGTTGCT+GGG + chr2.2:3521569-3521588 MS.gene051983:CDS 35.0%
TCTGACATGATACTGTTGTT+GGG + chr2.2:3522842-3522861 MS.gene051983:CDS 35.0%
TGAATGTGATAGGTACTAAC+TGG + chr2.2:3522229-3522248 MS.gene051983:intron 35.0%
TGCTTAAACCTTAACCAAAC+AGG - chr2.2:3519925-3519944 None:intergenic 35.0%
TGCTTCCAATTAACTAGGAT+GGG + chr2.2:3520745-3520764 MS.gene051983:intron 35.0%
TTCTGACACTATATTGTTGC+TGG + chr2.2:3521568-3521587 MS.gene051983:CDS 35.0%
TTCTGACATGATACTGTTGT+TGG + chr2.2:3522841-3522860 MS.gene051983:CDS 35.0%
TTGCTTCCAATTAACTAGGA+TGG + chr2.2:3520744-3520763 MS.gene051983:intron 35.0%
! AAGCAGTCACAAAGTATTAC+TGG + chr2.2:3521321-3521340 MS.gene051983:intron 35.0%
! AGAGATGTTCAATCAAGTTG+TGG + chr2.2:3521619-3521638 MS.gene051983:CDS 35.0%
! ATTAGGATTGAAGGTGTGTT+TGG + chr2.2:3521280-3521299 MS.gene051983:intron 35.0%
! CAACTTGCTTCCAATTAACT+AGG + chr2.2:3520740-3520759 MS.gene051983:intron 35.0%
! GAATAATGGAGAACATGAAC+TGG + chr2.2:3521802-3521821 MS.gene051983:CDS 35.0%
! GTTCAATCAAGTTGTGGAAA+AGG + chr2.2:3521625-3521644 MS.gene051983:CDS 35.0%
! TCAATCAAGTTGTGGAAAAG+GGG + chr2.2:3521627-3521646 MS.gene051983:CDS 35.0%
! TCTAATTTCCTGCATTGATG+GGG + chr2.2:3522062-3522081 MS.gene051983:intron 35.0%
!! CAATTAACTAGGATGGGTTA+TGG + chr2.2:3520751-3520770 MS.gene051983:intron 35.0%
!!! AGATTGACGTGTCTCTTTTT+TGG - chr2.2:3522037-3522056 None:intergenic 35.0%
!!! GCCTGATGTTTTAATTGTCT+TGG + chr2.2:3519838-3519857 MS.gene051983:CDS 35.0%
AACTGCAAATGTACACAGAC+AGG - chr2.2:3522470-3522489 None:intergenic 40.0%
ACATGATACTGTTGTTGGGA+AGG + chr2.2:3522846-3522865 MS.gene051983:CDS 40.0%
AGCAGGATATGATACATTGC+TGG + chr2.2:3522808-3522827 MS.gene051983:CDS 40.0%
AGGAAGCTGGGTATGATAAA+TGG + chr2.2:3521531-3521550 MS.gene051983:CDS 40.0%
ATCGGGGTTTATTTGCAAGT+TGG + chr2.2:3521683-3521702 MS.gene051983:CDS 40.0%
ATTATCAGTGATGAGGAAGC+TGG + chr2.2:3521518-3521537 MS.gene051983:CDS 40.0%
CCAACTCCATTTATCTCTCA+AGG + chr2.2:3519880-3519899 MS.gene051983:CDS 40.0%
CCTTGAGAGATAAATGGAGT+TGG - chr2.2:3519883-3519902 None:intergenic 40.0%
GAAAACTCACATGTTTCAGC+TGG - chr2.2:3521892-3521911 None:intergenic 40.0%
GAACAAGATGATTGAGATGG+CGG + chr2.2:3521595-3521614 MS.gene051983:CDS 40.0%
GGTTGTTCAATGAGATGATC+GGG + chr2.2:3521666-3521685 MS.gene051983:CDS 40.0%
GTCTTGTATGGGAAGAGTAA+TGG + chr2.2:3521970-3521989 MS.gene051983:intron 40.0%
GTTGTTCAATGAGATGATCG+GGG + chr2.2:3521667-3521686 MS.gene051983:CDS 40.0%
TCATTGAACAACCTCGTATC+TGG - chr2.2:3521659-3521678 None:intergenic 40.0%
TGGCAGAAGAGATGTTCAAT+CGG + chr2.2:3522885-3522904 MS.gene051983:CDS 40.0%
TTATCAGTGATGAGGAAGCT+GGG + chr2.2:3521519-3521538 MS.gene051983:CDS 40.0%
! AACTGGCATGGTTAGTTAGT+TGG + chr2.2:3522246-3522265 MS.gene051983:intron 40.0%
! CTTAGGATTGAAGGTGTGTT+TGG + chr2.2:3520632-3520651 MS.gene051983:intron 40.0%
! GACTTAGAGTGATTAGCTAC+TGG - chr2.2:3522726-3522745 None:intergenic 40.0%
! GTGAAGCATTAACACATACC+TGG - chr2.2:3522684-3522703 None:intergenic 40.0%
! TTATGTGCCGATATGGTGTA+TGG + chr2.2:3522655-3522674 MS.gene051983:intron 40.0%
! TTGGTGTTTATGTGCCGATA+TGG + chr2.2:3522648-3522667 MS.gene051983:intron 40.0%
AAATGTCTCCTAACTCCCAC+TGG + chr2.2:3522565-3522584 MS.gene051983:intron 45.0%
AAGTAGAACCCCATCAATGC+AGG - chr2.2:3522073-3522092 None:intergenic 45.0%
ACAGATCCATGAAGGCTTCA+GGG + chr2.2:3521732-3521751 MS.gene051983:CDS 45.0%
AGAAGAGATGTTCAATCGGG+TGG + chr2.2:3522889-3522908 MS.gene051983:CDS 45.0%
CTGGACACCATACACCATAT+CGG - chr2.2:3522665-3522684 None:intergenic 45.0%
GGAGGTTTACAGATCCATGA+AGG + chr2.2:3521724-3521743 MS.gene051983:CDS 45.0%
GGCAGAAGAGATGTTCAATC+GGG + chr2.2:3522886-3522905 MS.gene051983:CDS 45.0%
GTGATAGGTACTAACTGGCA+TGG + chr2.2:3522234-3522253 MS.gene051983:intron 45.0%
TACAGATCCATGAAGGCTTC+AGG + chr2.2:3521731-3521750 MS.gene051983:CDS 45.0%
TACTGGAGGAGATTCACACT+GGG + chr2.2:3522117-3522136 MS.gene051983:intron 45.0%
TGTCTTCGTCAAACACCAGT+GGG - chr2.2:3522583-3522602 None:intergenic 45.0%
TTCAATCGGGTGGTTGAAAC+TGG + chr2.2:3522899-3522918 MS.gene051983:CDS 45.0%
!! CAAGTGTCGGTACCACATAT+AGG - chr2.2:3521240-3521259 None:intergenic 45.0%
!! GCAAGTTGGTAATACGGAGA+AGG + chr2.2:3521697-3521716 MS.gene051983:CDS 45.0%
!!! TTATTTTTTCATTTTAATTT+TGG + chr2.2:3521463-3521482 MS.gene051983:intron 5.0%
AGGGGTTGAAACCAGATACG+AGG + chr2.2:3521645-3521664 MS.gene051983:CDS 50.0%
CAAACACCCTGAAGCCTTCA+TGG - chr2.2:3521741-3521760 None:intergenic 50.0%
CGATATGGTGTATGGTGTCC+AGG + chr2.2:3522663-3522682 MS.gene051983:intron 50.0%
CTACTGGAGGAGATTCACAC+TGG + chr2.2:3522116-3522135 MS.gene051983:intron 50.0%
GGTGGTTGAAACTGGAAACG+AGG + chr2.2:3522907-3522926 MS.gene051983:CDS 50.0%
GTCAAACACCAGTGGGAGTT+AGG - chr2.2:3522576-3522595 None:intergenic 50.0%
GTGTCTTCGTCAAACACCAG+TGG - chr2.2:3522584-3522603 None:intergenic 50.0%
TAATACGGAGAAGGCGATGG+AGG + chr2.2:3521706-3521725 MS.gene051983:CDS 50.0%
TGGTAATACGGAGAAGGCGA+TGG + chr2.2:3521703-3521722 MS.gene051983:CDS 50.0%
TTGGCGGCGACTGCCAATTT+CGG + chr2.2:3522188-3522207 MS.gene051983:intron 55.0%
! GAAGGCTTCAGGGTGTTTGC+CGG + chr2.2:3521742-3521761 MS.gene051983:CDS 55.0%


Chromosome Type Strat End Strand Name
chr2.2 gene 3519728 3522940 3519728 ID=MS.gene051983
chr2.2 mRNA 3519728 3522940 3519728 ID=MS.gene051983.t1;Parent=MS.gene051983
chr2.2 exon 3519728 3519901 3519728 ID=MS.gene051983.t1.exon1;Parent=MS.gene051983.t1
chr2.2 CDS 3519728 3519901 3519728 ID=cds.MS.gene051983.t1;Parent=MS.gene051983.t1
chr2.2 exon 3521506 3521901 3521506 ID=MS.gene051983.t1.exon2;Parent=MS.gene051983.t1
chr2.2 CDS 3521506 3521901 3521506 ID=cds.MS.gene051983.t1;Parent=MS.gene051983.t1
chr2.2 exon 3522779 3522940 3522779 ID=MS.gene051983.t1.exon3;Parent=MS.gene051983.t1
chr2.2 CDS 3522779 3522940 3522779 ID=cds.MS.gene051983.t1;Parent=MS.gene051983.t1
Gene Sequence

>MS.gene051983

ATGGTAATTTCCAAAGAAAGCGTTCAAGTTATTCACGCTCTCAAACTCGCTAAAAATTCCGAAGAAAAACTCAACCAAGTTCTCAAGTCTAAATTGCTTAGGTTATTGAAGCCTGATGTTTTAATTGTCTTGGCTGAATTGCATAGACAAAACCAACTCCATTTATCTCTCAAGGTAAAAATCACAATTAAAACCCTGTTTGGTTAAGGTTTAAGCACTTATTGCATAAGTGATTATCATGTACATGTTATTATGCACTTATTTTATTTGAGGTTATTTACTAATATAATTTGAGAGAGCTTATAAAAATACTTATGATATGCCTATAAGTTGTTTGCAACTTGTTTCTAATAAGCTATCTAGGACGGCTTATGAAAACAAACAACTTATAACTTATATGAAAATGAGATGGCTTTATTTTATCTTTTGATAGATAAATATCTTATTGATGAGAAATTATATGACTAACACTTAATCAAGTTGTTTATCCAATTCCAAACAAAGTCAATATCAAACTATTATCTTATTAGCTATAAGCTTTTTTCATAAGTTATTCTGGAGAACATGTGAAAATAAGCTGAAAACTACTCACGGACATGTCAAAAACTGTTTTCTCTAGTTTTTTTCAAGCAGTCTAAGAAGTTTCTGTGCTAATAGAGAGACTCAAATAATTCAATTCAAACACCCTAATTACACTAGTGACTAACTATTTTTTGTGCGTCTAAATTCTCCGTTCTTATAGAAAATGATATCCAACTAATTAGAAGTTCTGCTGATAGTTAAGTTGCTAGAAAATTATTTCATTTAGGTATCAAACTCATATTCAACTTTAATAATTTGATCATAGTTGACGGATATTAACCTATAAGTATTAAGTAGTACTGACACTTAAAAGATTAAAGGTCTTAGGATTGAAGGTGTGTTTGGTGTCACATGACACAACATAAGCAGTCACCTTCGATCATTTCTATGTCTGTTGTCAATGTATCTGTCAATGCTTTACATGCATTAACAACTTGCTTCCAATTAACTAGGATGGGTTATGGAAACAACTTATAGCTTATATGAAAATGATATGACTTTATTTTATCTTTTGATATATAAATATCTTATACATAAGAAGTTATATGATAAGTGTTTATCAAAACAGAGCCAATGTCAAACTATTATCTTATAAGCTATAAGCTGTTTTCATAAGCTATTCATGATAACATGTGAAATTAAGCTGAAAACAACTTACACACATGTCATTAATTGTTTTCACAAGTTTTTTCAGATAATCTCACAATTGTTTGTGCTAATAGTGAAATTCAAATAAGCCAATTCAAACAACCCTAATTAGACTAGTGACTAACTATGTTTTGTGTGTCTAAGTTCTCTGTTCTTATAGAAAATGATATCCAACTAATTAGAAGTTCTGTTGATAGTTAAGTTGCTAGAAAATTATTTCATATAGGTATCAAACTCATATACTAATTTAATAATTTGATCGTAGTTGAAGGATATTAACCTATATGTGGTACCGACACTTGAAAGATTAAAGGTCTTAAGAATTAGGATTGAAGGTGTGTTTGGTGTCACATGACACAACATAAGCAGTCACAAAGTATTACTGGTGTTTATGTGTGGGTATCATGTCTGTTGTCAATGTATGTGTCAATGCTTTACATGCATTAACAACTTGCTTCTAATCAGTTAGTTACCAGTAGCTAATAATTCTAACTACTCTTTCTCATTATTTTTTCATTTTAATTTTGGATTTGATAATTGTAACATAGGTTTTCGAGTTTATTATCAGTGATGAGGAAGCTGGGTATGATAAATGGCTGCTGCCATTGTATTCTGACACTATATTGTTGCTGGGAAAGAACAAGATGATTGAGATGGCGGAAGAGATGTTCAATCAAGTTGTGGAAAAGGGGTTGAAACCAGATACGAGGTTGTTCAATGAGATGATCGGGGTTTATTTGCAAGTTGGTAATACGGAGAAGGCGATGGAGGTTTACAGATCCATGAAGGCTTCAGGGTGTTTGCCGGATTCATTGACATTCACTATACTGATTAGGAATCTAATGAATAATGGAGAACATGAACTGGTTGAAACTTTGAAAAAAGAGAGTTTTGACTATGTCAATAAACCTGATAAATTTGTTCAGAAAGTCCAGCTGAAACATGTGAGTTTTCAAATTGTATGGTGTTATGTTATACCTTATAGTTTGTGATGTACTTGTAAATTTGTAGTGTCTTGTATGGGAAGAGTAATGGAATTAGCTAATTTTGTAAATTTGTTTTTCTGTTTGTTTCAGCCAAAAAAGAGACACGTCAATCTGGTTATCTAATTTCCTGCATTGATGGGGTTCTACTTATACTGTTTCATTTTCATCATTTCTACTGGAGGAGATTCACACTGGGAGCATTCCAGACATTTGAGCTACAATTTCCAAATTACTTTTATGCTTGTTGGCGGCGACTGCCAATTTCGGTTGTATTGATGTAGTGTGTGAATGTGATAGGTACTAACTGGCATGGTTAGTTAGTTGGTTCCAATCTATATACTAGTGATGCTGCACCGTTGATAAGATCATTTGTACTTTTGAAATGAATATTAATAACAATGAGAAAGGGTTGTTGCAGCTCAAGTTATTCTGTTTACGATACGCTCTTTCCTTATTGCGAAAATAATGGTGTAGAATTTTAGCTGGTAGCATTCAGAATAAAAGTGCTGCACTTGTAAAAATACCTGTCTGTGTACATTTGCAGTTTTAAATCAACTAAGCAAAGCATCGTTGACACAAAATAATACAAGACAATCCAAATCATCAATATAATTGAAAATTAAATGTCTCCTAACTCCCACTGGTGTTTGACGAAGACACATGCATCAGTTACCTTCAACCATTTGTATTTTCTCAAATTGTTTTTGGTGTTTATGTGCCGATATGGTGTATGGTGTCCAGGTATGTGTTAATGCTTCACGTGCATTAACAACTCACTTCCAGTAGCTAATCACTCTAAGTCTCTTACTACTCTTCATTATTAATTGAAGCATAGGTTTTAGAGCTTATTATTAGTGATGAGGAAGCAGGATATGATACATTGCTGGAACAGTTGTATTCTGACATGATACTGTTGTTGGGAAGGAACAAGATGATTGAGATGGCAGAAGAGATGTTCAATCGGGTGGTTGAAACTGGAAACGAGGTTGTTAAATGA

Protein sequence

>MS.gene051983.t1

MVISKESVQVIHALKLAKNSEEKLNQVLKSKLLRLLKPDVLIVLAELHRQNQLHLSLKVFEFIISDEEAGYDKWLLPLYSDTILLLGKNKMIEMAEEMFNQVVEKGLKPDTRLFNEMIGVYLQVGNTEKAMEVYRSMKASGCLPDSLTFTILIRNLMNNGEHELVETLKKESFDYVNKPDKFVQKVQLKHVLELIISDEEAGYDTLLEQLYSDMILLLGRNKMIEMAEEMFNRVVETGNEVVK