Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene074187.t1 | XP_003618770.1 | 96.4 | 444 | 16 | 0 | 1 | 444 | 1 | 444 | 1.50E-217 | 765.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene074187.t1 | Q8VYR5 | 51.1 | 442 | 209 | 3 | 1 | 441 | 1 | 436 | 1.1e-107 | 391.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene074187.t1 | G7KN56 | 96.4 | 444 | 16 | 0 | 1 | 444 | 1 | 444 | 1.1e-217 | 765.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene074187 | MS.gene87037 | PPI |
| MS.gene074187 | MS.gene87771 | PPI |
| MS.gene074187 | MS.gene42101 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene074187.t1 | MTR_6g021740 | 96.171 | 444 | 17 | 0 | 1 | 444 | 1 | 444 | 0.0 | 893 |
| MS.gene074187.t1 | MTR_2g437460 | 30.000 | 150 | 105 | 0 | 43 | 192 | 202 | 351 | 3.24e-16 | 81.6 |
| MS.gene074187.t1 | MTR_0237s0070 | 23.889 | 360 | 250 | 13 | 33 | 383 | 317 | 661 | 1.72e-14 | 76.3 |
| MS.gene074187.t1 | MTR_6g079830 | 21.163 | 430 | 305 | 11 | 3 | 428 | 196 | 595 | 3.56e-14 | 75.1 |
| MS.gene074187.t1 | MTR_6g079180 | 21.703 | 364 | 257 | 9 | 8 | 369 | 20 | 357 | 5.80e-14 | 73.6 |
| MS.gene074187.t1 | MTR_1g033960 | 29.530 | 149 | 105 | 0 | 44 | 192 | 263 | 411 | 8.27e-14 | 73.9 |
| MS.gene074187.t1 | MTR_1g033960 | 21.472 | 326 | 200 | 10 | 38 | 318 | 147 | 461 | 1.13e-11 | 67.4 |
| MS.gene074187.t1 | MTR_4g075270 | 22.546 | 377 | 245 | 10 | 67 | 408 | 485 | 849 | 1.07e-13 | 73.9 |
| MS.gene074187.t1 | MTR_3g105900 | 26.174 | 149 | 110 | 0 | 48 | 196 | 939 | 1087 | 1.08e-13 | 73.9 |
| MS.gene074187.t1 | MTR_3g105900 | 23.372 | 261 | 180 | 4 | 67 | 320 | 222 | 469 | 1.64e-11 | 67.0 |
| MS.gene074187.t1 | MTR_6g079210 | 21.212 | 363 | 260 | 8 | 8 | 369 | 20 | 357 | 1.73e-13 | 72.0 |
| MS.gene074187.t1 | MTR_2g026645 | 26.275 | 255 | 174 | 7 | 44 | 294 | 286 | 530 | 1.93e-13 | 72.8 |
| MS.gene074187.t1 | MTR_8g105170 | 26.829 | 164 | 116 | 2 | 34 | 195 | 371 | 532 | 3.47e-13 | 72.4 |
| MS.gene074187.t1 | MTR_6g079920 | 21.818 | 385 | 270 | 9 | 3 | 383 | 196 | 553 | 4.62e-13 | 71.6 |
| MS.gene074187.t1 | MTR_4g074390 | 22.086 | 326 | 218 | 6 | 17 | 326 | 243 | 548 | 5.05e-13 | 71.2 |
| MS.gene074187.t1 | MTR_1g068960 | 28.571 | 161 | 115 | 0 | 34 | 194 | 436 | 596 | 5.59e-13 | 71.6 |
| MS.gene074187.t1 | MTR_5g095130 | 24.521 | 261 | 175 | 4 | 44 | 304 | 621 | 859 | 6.59e-13 | 71.2 |
| MS.gene074187.t1 | MTR_6g079310 | 23.611 | 360 | 251 | 13 | 33 | 383 | 138 | 482 | 1.02e-12 | 70.1 |
| MS.gene074187.t1 | MTR_6g069180 | 24.128 | 344 | 243 | 11 | 44 | 383 | 200 | 529 | 1.45e-12 | 70.1 |
| MS.gene074187.t1 | MTR_6g079240 | 23.611 | 360 | 251 | 13 | 33 | 383 | 26 | 370 | 1.46e-12 | 69.7 |
| MS.gene074187.t1 | MTR_6g078160 | 21.739 | 345 | 250 | 8 | 44 | 383 | 195 | 524 | 1.52e-12 | 69.7 |
| MS.gene074187.t1 | MTR_1g095880 | 24.242 | 264 | 188 | 7 | 66 | 326 | 302 | 556 | 1.75e-12 | 70.1 |
| MS.gene074187.t1 | MTR_3g088950 | 23.214 | 168 | 125 | 1 | 25 | 192 | 236 | 399 | 3.24e-12 | 68.9 |
| MS.gene074187.t1 | MTR_4g108060 | 21.779 | 326 | 219 | 6 | 17 | 326 | 109 | 414 | 3.67e-12 | 68.6 |
| MS.gene074187.t1 | MTR_4g108060 | 21.779 | 326 | 219 | 6 | 17 | 326 | 243 | 548 | 4.94e-12 | 68.2 |
| MS.gene074187.t1 | MTR_0014s0250 | 25.161 | 155 | 116 | 0 | 38 | 192 | 331 | 485 | 6.67e-12 | 67.8 |
| MS.gene074187.t1 | MTR_8g098755 | 28.859 | 149 | 106 | 0 | 44 | 192 | 314 | 462 | 6.81e-12 | 68.2 |
| MS.gene074187.t1 | MTR_7g017570 | 27.326 | 172 | 125 | 0 | 35 | 206 | 344 | 515 | 7.13e-12 | 68.2 |
| MS.gene074187.t1 | MTR_1g035250 | 27.976 | 168 | 121 | 0 | 39 | 206 | 273 | 440 | 7.51e-12 | 67.8 |
| MS.gene074187.t1 | MTR_4g094688 | 26.554 | 177 | 128 | 1 | 34 | 210 | 311 | 485 | 8.26e-12 | 68.2 |
| MS.gene074187.t1 | MTR_8g107050 | 23.649 | 296 | 213 | 5 | 44 | 336 | 404 | 689 | 1.15e-11 | 67.4 |
| MS.gene074187.t1 | MTR_3g053350 | 22.896 | 297 | 205 | 6 | 34 | 321 | 476 | 757 | 1.35e-11 | 67.4 |
| MS.gene074187.t1 | MTR_3g053350 | 28.571 | 126 | 90 | 0 | 67 | 192 | 299 | 424 | 5.21e-11 | 65.5 |
| MS.gene074187.t1 | MTR_5g096480 | 32.558 | 129 | 80 | 2 | 71 | 195 | 1 | 126 | 1.54e-11 | 62.8 |
| MS.gene074187.t1 | MTR_6g079250 | 25.153 | 163 | 122 | 0 | 39 | 201 | 176 | 338 | 1.63e-11 | 66.2 |
| MS.gene074187.t1 | MTR_6g079250 | 22.093 | 344 | 249 | 8 | 33 | 369 | 26 | 357 | 3.86e-11 | 65.1 |
| MS.gene074187.t1 | MTR_6g077540 | 23.030 | 165 | 127 | 0 | 37 | 201 | 356 | 520 | 1.67e-11 | 66.6 |
| MS.gene074187.t1 | MTR_1g086500 | 27.703 | 148 | 98 | 3 | 39 | 181 | 154 | 297 | 1.81e-11 | 66.2 |
| MS.gene074187.t1 | MTR_7g017530 | 26.744 | 172 | 126 | 0 | 35 | 206 | 309 | 480 | 2.29e-11 | 66.6 |
| MS.gene074187.t1 | MTR_0177s0060 | 25.610 | 164 | 111 | 3 | 38 | 191 | 303 | 465 | 2.56e-11 | 65.9 |
| MS.gene074187.t1 | MTR_4g133740 | 25.581 | 172 | 126 | 2 | 34 | 204 | 310 | 480 | 2.57e-11 | 66.2 |
| MS.gene074187.t1 | MTR_0308s0020 | 25.161 | 155 | 116 | 0 | 38 | 192 | 327 | 481 | 2.65e-11 | 65.9 |
| MS.gene074187.t1 | MTR_8g107050 | 23.875 | 289 | 207 | 5 | 44 | 329 | 404 | 682 | 2.66e-11 | 66.2 |
| MS.gene074187.t1 | MTR_3g034990 | 23.810 | 147 | 112 | 0 | 42 | 188 | 345 | 491 | 3.62e-11 | 65.5 |
| MS.gene074187.t1 | MTR_6g080200 | 26.923 | 156 | 110 | 2 | 39 | 192 | 314 | 467 | 3.89e-11 | 65.5 |
| MS.gene074187.t1 | MTR_2g026635 | 28.169 | 142 | 101 | 1 | 44 | 184 | 288 | 429 | 4.16e-11 | 65.5 |
| MS.gene074187.t1 | MTR_8g071970 | 21.036 | 309 | 228 | 5 | 37 | 340 | 483 | 780 | 4.75e-11 | 65.5 |
| MS.gene074187.t1 | MTR_7g067460 | 24.275 | 276 | 160 | 9 | 48 | 319 | 167 | 397 | 5.45e-11 | 65.1 |
| MS.gene074187.t1 | MTR_6g078190 | 26.282 | 156 | 115 | 0 | 39 | 194 | 171 | 326 | 5.80e-11 | 64.7 |
| MS.gene074187.t1 | MTR_6g069300 | 24.540 | 163 | 114 | 1 | 38 | 191 | 337 | 499 | 6.02e-11 | 65.1 |
| MS.gene074187.t1 | MTR_7g012890 | 23.718 | 156 | 119 | 0 | 37 | 192 | 331 | 486 | 6.10e-11 | 64.7 |
| MS.gene074187.t1 | MTR_5g045490 | 26.087 | 161 | 118 | 1 | 35 | 194 | 344 | 504 | 6.12e-11 | 65.1 |
| MS.gene074187.t1 | MTR_5g042370 | 26.752 | 157 | 115 | 0 | 35 | 191 | 261 | 417 | 6.66e-11 | 65.1 |
| MS.gene074187.t1 | MTR_1g040725 | 26.752 | 157 | 115 | 0 | 35 | 191 | 841 | 997 | 7.74e-11 | 65.1 |
| MS.gene074187.t1 | MTR_3g114700 | 29.530 | 149 | 105 | 0 | 44 | 192 | 281 | 429 | 7.78e-11 | 64.3 |
| MS.gene074187.t1 | MTR_2g036560 | 31.333 | 150 | 101 | 2 | 44 | 192 | 447 | 595 | 8.35e-11 | 64.7 |
| MS.gene074187.t1 | MTR_6g079440 | 24.691 | 162 | 113 | 1 | 39 | 191 | 328 | 489 | 8.56e-11 | 64.3 |
| MS.gene074187.t1 | MTR_0573s0020 | 24.051 | 158 | 120 | 0 | 44 | 201 | 60 | 217 | 9.10e-11 | 62.8 |
| MS.gene074187.t1 | MTR_7g090340 | 26.974 | 152 | 110 | 1 | 44 | 194 | 254 | 405 | 9.32e-11 | 64.3 |
| MS.gene074187.t1 | MTR_1g031720 | 26.562 | 128 | 94 | 0 | 65 | 192 | 437 | 564 | 9.73e-11 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene074187.t1 | AT4G35850 | 56.335 | 442 | 186 | 3 | 1 | 441 | 1 | 436 | 0.0 | 539 |
| MS.gene074187.t1 | AT5G61990 | 24.194 | 310 | 221 | 4 | 35 | 340 | 407 | 706 | 1.88e-17 | 85.9 |
| MS.gene074187.t1 | AT1G64583 | 24.299 | 321 | 222 | 8 | 3 | 319 | 46 | 349 | 1.05e-13 | 73.2 |
| MS.gene074187.t1 | AT1G64583 | 24.062 | 320 | 226 | 7 | 4 | 319 | 68 | 374 | 1.39e-13 | 73.2 |
| MS.gene074187.t1 | AT1G09820 | 22.141 | 411 | 272 | 11 | 34 | 424 | 212 | 594 | 2.00e-13 | 72.8 |
| MS.gene074187.t1 | AT5G16640 | 23.039 | 408 | 284 | 10 | 20 | 416 | 88 | 476 | 2.10e-13 | 72.4 |
| MS.gene074187.t1 | AT3G49730 | 24.020 | 204 | 142 | 3 | 16 | 218 | 214 | 405 | 2.19e-13 | 72.8 |
| MS.gene074187.t1 | AT2G02150 | 24.342 | 304 | 208 | 5 | 45 | 340 | 262 | 551 | 3.27e-13 | 72.4 |
| MS.gene074187.t1 | AT2G02150 | 24.342 | 304 | 208 | 5 | 45 | 340 | 262 | 551 | 3.27e-13 | 72.4 |
| MS.gene074187.t1 | AT2G37230 | 26.000 | 150 | 111 | 0 | 43 | 192 | 218 | 367 | 4.76e-13 | 71.6 |
| MS.gene074187.t1 | AT1G09900 | 24.571 | 350 | 209 | 12 | 8 | 324 | 150 | 477 | 4.94e-13 | 71.6 |
| MS.gene074187.t1 | AT5G64320 | 25.574 | 305 | 205 | 7 | 30 | 326 | 304 | 594 | 6.52e-13 | 71.2 |
| MS.gene074187.t1 | AT2G17140 | 23.978 | 367 | 248 | 9 | 44 | 406 | 325 | 664 | 9.10e-13 | 70.9 |
| MS.gene074187.t1 | AT2G17140 | 23.978 | 367 | 248 | 9 | 44 | 406 | 325 | 664 | 9.10e-13 | 70.9 |
| MS.gene074187.t1 | AT2G16880 | 26.241 | 141 | 104 | 0 | 48 | 188 | 243 | 383 | 1.08e-12 | 70.5 |
| MS.gene074187.t1 | AT5G39710 | 21.231 | 325 | 209 | 5 | 16 | 340 | 287 | 564 | 1.09e-12 | 70.5 |
| MS.gene074187.t1 | AT5G39710 | 20.958 | 334 | 226 | 6 | 41 | 340 | 165 | 494 | 2.82e-11 | 66.2 |
| MS.gene074187.t1 | AT4G16390 | 27.119 | 177 | 119 | 2 | 26 | 192 | 287 | 463 | 2.76e-12 | 69.3 |
| MS.gene074187.t1 | AT1G63400 | 21.851 | 389 | 283 | 7 | 33 | 416 | 108 | 480 | 5.31e-12 | 68.2 |
| MS.gene074187.t1 | AT4G19440 | 27.703 | 148 | 101 | 2 | 48 | 192 | 556 | 700 | 5.81e-12 | 68.6 |
| MS.gene074187.t1 | AT4G19440 | 27.703 | 148 | 101 | 2 | 48 | 192 | 556 | 700 | 5.81e-12 | 68.6 |
| MS.gene074187.t1 | AT4G19440 | 27.703 | 148 | 101 | 2 | 48 | 192 | 556 | 700 | 5.81e-12 | 68.6 |
| MS.gene074187.t1 | AT4G19440 | 27.703 | 148 | 101 | 2 | 48 | 192 | 556 | 700 | 5.81e-12 | 68.6 |
| MS.gene074187.t1 | AT1G06580 | 22.807 | 285 | 214 | 3 | 42 | 326 | 5 | 283 | 6.69e-12 | 67.4 |
| MS.gene074187.t1 | AT1G06580 | 23.824 | 319 | 229 | 8 | 27 | 340 | 58 | 367 | 9.14e-11 | 63.9 |
| MS.gene074187.t1 | AT1G06580 | 22.807 | 285 | 214 | 3 | 42 | 326 | 5 | 283 | 6.69e-12 | 67.4 |
| MS.gene074187.t1 | AT1G06580 | 23.824 | 319 | 229 | 8 | 27 | 340 | 58 | 367 | 9.14e-11 | 63.9 |
| MS.gene074187.t1 | AT5G01110 | 19.165 | 407 | 293 | 7 | 39 | 415 | 194 | 594 | 8.82e-12 | 67.8 |
| MS.gene074187.t1 | AT5G01110 | 19.165 | 407 | 293 | 7 | 39 | 415 | 222 | 622 | 9.47e-12 | 67.8 |
| MS.gene074187.t1 | AT1G62720 | 21.562 | 320 | 207 | 4 | 44 | 363 | 103 | 378 | 1.06e-11 | 67.0 |
| MS.gene074187.t1 | AT1G06580 | 22.807 | 285 | 214 | 3 | 42 | 326 | 111 | 389 | 1.09e-11 | 67.0 |
| MS.gene074187.t1 | AT5G46680 | 24.615 | 260 | 179 | 8 | 44 | 297 | 82 | 330 | 1.20e-11 | 67.0 |
| MS.gene074187.t1 | AT1G62680 | 22.491 | 289 | 198 | 7 | 48 | 325 | 123 | 396 | 1.51e-11 | 66.6 |
| MS.gene074187.t1 | AT1G62680 | 22.491 | 289 | 198 | 7 | 48 | 325 | 123 | 396 | 1.51e-11 | 66.6 |
| MS.gene074187.t1 | AT1G63230 | 23.464 | 179 | 135 | 1 | 39 | 217 | 140 | 316 | 1.52e-11 | 65.9 |
| MS.gene074187.t1 | AT5G65560 | 24.483 | 290 | 183 | 8 | 67 | 324 | 275 | 560 | 1.95e-11 | 66.6 |
| MS.gene074187.t1 | AT5G65560 | 24.483 | 290 | 183 | 8 | 67 | 324 | 275 | 560 | 1.95e-11 | 66.6 |
| MS.gene074187.t1 | AT5G65560 | 24.483 | 290 | 183 | 8 | 67 | 324 | 275 | 560 | 1.95e-11 | 66.6 |
| MS.gene074187.t1 | AT1G05670 | 26.087 | 161 | 119 | 0 | 35 | 195 | 376 | 536 | 2.18e-11 | 66.6 |
| MS.gene074187.t1 | AT1G05670 | 26.087 | 161 | 119 | 0 | 35 | 195 | 376 | 536 | 2.18e-11 | 66.6 |
| MS.gene074187.t1 | AT1G05670 | 26.087 | 161 | 119 | 0 | 35 | 195 | 376 | 536 | 2.18e-11 | 66.6 |
| MS.gene074187.t1 | AT5G15010 | 27.273 | 143 | 99 | 2 | 44 | 185 | 372 | 510 | 2.24e-11 | 66.2 |
| MS.gene074187.t1 | AT5G65820 | 26.389 | 144 | 101 | 1 | 75 | 218 | 282 | 420 | 2.25e-11 | 66.2 |
| MS.gene074187.t1 | AT3G16890 | 22.381 | 210 | 147 | 2 | 35 | 228 | 321 | 530 | 2.66e-11 | 65.9 |
| MS.gene074187.t1 | AT5G04810 | 25.974 | 154 | 108 | 1 | 34 | 181 | 718 | 871 | 2.82e-11 | 66.2 |
| MS.gene074187.t1 | AT3G16890 | 22.381 | 210 | 147 | 2 | 35 | 228 | 450 | 659 | 2.83e-11 | 66.2 |
| MS.gene074187.t1 | AT3G48810 | 23.123 | 333 | 206 | 11 | 35 | 327 | 271 | 593 | 3.29e-11 | 65.9 |
| MS.gene074187.t1 | AT3G60050 | 27.564 | 156 | 113 | 0 | 40 | 195 | 214 | 369 | 3.38e-11 | 65.5 |
| MS.gene074187.t1 | AT3G60050 | 27.564 | 156 | 113 | 0 | 40 | 195 | 214 | 369 | 3.38e-11 | 65.5 |
| MS.gene074187.t1 | AT5G41170 | 20.833 | 312 | 205 | 4 | 49 | 359 | 11 | 281 | 3.62e-11 | 65.1 |
| MS.gene074187.t1 | AT5G41170 | 20.513 | 312 | 206 | 3 | 49 | 359 | 111 | 381 | 4.57e-11 | 65.1 |
| MS.gene074187.t1 | AT5G41170 | 20.513 | 312 | 206 | 3 | 49 | 359 | 111 | 381 | 4.71e-11 | 65.1 |
| MS.gene074187.t1 | AT1G63130 | 21.192 | 302 | 228 | 4 | 41 | 340 | 147 | 440 | 5.97e-11 | 65.1 |
| MS.gene074187.t1 | AT1G63130 | 21.192 | 302 | 228 | 4 | 41 | 340 | 147 | 440 | 5.97e-11 | 65.1 |
| MS.gene074187.t1 | AT2G15630 | 26.515 | 132 | 97 | 0 | 67 | 198 | 419 | 550 | 6.80e-11 | 64.7 |
| MS.gene074187.t1 | AT1G79490 | 25.455 | 165 | 123 | 0 | 34 | 198 | 337 | 501 | 6.81e-11 | 65.1 |
| MS.gene074187.t1 | AT1G62670 | 20.915 | 306 | 230 | 5 | 38 | 340 | 144 | 440 | 7.64e-11 | 64.7 |
| MS.gene074187.t1 | AT1G62670 | 20.915 | 306 | 230 | 5 | 38 | 340 | 144 | 440 | 7.64e-11 | 64.7 |
Find 103 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGGAGCTCACTTCCCATTT+TGG | 0.146501 | 6.1:-5213346 | None:intergenic |
| GGGTCACTCCAACGGGTTTC+GGG | 0.159345 | 6.1:+5202256 | MS.gene074187:CDS |
| AAATTTCTTCATTCTCTCTT+AGG | 0.223369 | 6.1:+5202127 | MS.gene074187:CDS |
| TTTGAGGACTTTCTAGCTTT+AGG | 0.243264 | 6.1:+5212300 | MS.gene074187:CDS |
| TTGAGGACTTTCTAGCTTTA+GGG | 0.266162 | 6.1:+5212301 | MS.gene074187:CDS |
| TGCATGACAATATAGATATC+AGG | 0.270813 | 6.1:-5208398 | None:intergenic |
| TCAGGAATACAACACTGTTT+TGG | 0.277702 | 6.1:+5202339 | MS.gene074187:CDS |
| CAGATGTAGGTTTGTACATT+TGG | 0.278420 | 6.1:-5205747 | None:intergenic |
| TGATATGACCGCAGCTGGTC+TGG | 0.279892 | 6.1:+5206154 | MS.gene074187:CDS |
| GCATCGAAATCATCAGTAAA+AGG | 0.287772 | 6.1:-5206230 | None:intergenic |
| TGGGTCACTCCAACGGGTTT+CGG | 0.303750 | 6.1:+5202255 | MS.gene074187:CDS |
| GAACTCTGATCAGGCTGTTC+AGG | 0.318795 | 6.1:+5205580 | MS.gene074187:CDS |
| GCATGATGCTTTCTTCTTCA+AGG | 0.330861 | 6.1:+5204901 | MS.gene074187:CDS |
| TTAAATAAGTTCTGCTATGC+TGG | 0.341477 | 6.1:+5206179 | MS.gene074187:CDS |
| CCCATTTCGCACTGCTAAAC+GGG | 0.344141 | 6.1:-5202236 | None:intergenic |
| GCAAATTTCTATAAATATAC+TGG | 0.351576 | 6.1:+5213201 | MS.gene074187:CDS |
| ATACTAATGCTAACTACATA+TGG | 0.360715 | 6.1:+5213511 | MS.gene074187:CDS |
| ATATTGTCATGCAAGTAATT+AGG | 0.361423 | 6.1:+5208408 | MS.gene074187:CDS |
| GGGAAGTGAGCTCCTGATTA+TGG | 0.363803 | 6.1:+5213353 | MS.gene074187:CDS |
| TTCCAGCAGAAGAGTATAAC+AGG | 0.368904 | 6.1:+5202296 | MS.gene074187:CDS |
| CCAAATGAAAATCATGGGTT+TGG | 0.377536 | 6.1:+5204925 | MS.gene074187:CDS |
| CTCCTGTTATACTCTTCTGC+TGG | 0.379633 | 6.1:-5202298 | None:intergenic |
| CACTCGGTCTATGCGTCCTT+GGG | 0.383140 | 6.1:-5205790 | None:intergenic |
| TACATTTGGCTTTACTTCCA+TGG | 0.387492 | 6.1:-5205733 | None:intergenic |
| TTTCACCAGCAGCCATAATC+AGG | 0.387899 | 6.1:-5213365 | None:intergenic |
| ACACTCGGTCTATGCGTCCT+TGG | 0.391054 | 6.1:-5205791 | None:intergenic |
| ACCCATTTCGCACTGCTAAA+CGG | 0.391566 | 6.1:-5202237 | None:intergenic |
| ACCCGTTTAGCAGTGCGAAA+TGG | 0.400081 | 6.1:+5202235 | MS.gene074187:CDS |
| CAACGGCAGAATACGTTACT+AGG | 0.406550 | 6.1:+5206451 | MS.gene074187:CDS |
| CCCGTTTAGCAGTGCGAAAT+GGG | 0.407153 | 6.1:+5202236 | MS.gene074187:CDS |
| TATGAAGATATGATGCTTGA+TGG | 0.425865 | 6.1:+5204815 | MS.gene074187:CDS |
| CAAGGACCAAATGAAAATCA+TGG | 0.433875 | 6.1:+5204919 | MS.gene074187:CDS |
| GCGAAATGGGTCACTCCAAC+GGG | 0.441863 | 6.1:+5202249 | MS.gene074187:CDS |
| GATATGACCGCAGCTGGTCT+GGG | 0.446322 | 6.1:+5206155 | MS.gene074187:CDS |
| CAGCAGCATTAAATGCAGTA+TGG | 0.448079 | 6.1:-5206509 | None:intergenic |
| GGCGTGGAGGATTCTTGAAC+AGG | 0.453377 | 6.1:+5206472 | MS.gene074187:CDS |
| CTGCTGGAACATTGTAGAAT+CGG | 0.454402 | 6.1:-5202282 | None:intergenic |
| TGCGGATTTCAAGAATGTTA+AGG | 0.462395 | 6.1:+5206530 | MS.gene074187:CDS |
| TGAGTAACCAACATGAGTCT+TGG | 0.472349 | 6.1:-5214220 | None:intergenic |
| GGATGCACTTCTTGAAATGC+TGG | 0.478829 | 6.1:+5208358 | MS.gene074187:CDS |
| CACCATCACATTCTCAGCAT+TGG | 0.479555 | 6.1:-5206397 | None:intergenic |
| ACTTCTTGAAATGCTGGAAA+AGG | 0.494222 | 6.1:+5208364 | MS.gene074187:CDS |
| AACTTTCTAATTTCAACCTG+TGG | 0.505817 | 6.1:+5205548 | MS.gene074187:CDS |
| GAAATGCAAGAACTCTGATC+AGG | 0.506823 | 6.1:+5205571 | MS.gene074187:CDS |
| GTCCGTGATATGACCGCAGC+TGG | 0.507308 | 6.1:+5206149 | MS.gene074187:CDS |
| GACTTTCTAGCTTTAGGGAA+GGG | 0.507488 | 6.1:+5212306 | MS.gene074187:CDS |
| TGCAGTATGGTATGCAACAA+AGG | 0.508294 | 6.1:-5206496 | None:intergenic |
| TGACTGCAGACGCTTGCAGA+GGG | 0.508918 | 6.1:+5213148 | MS.gene074187:intron |
| GATTATGGCTGCTGGTGAAA+AGG | 0.512069 | 6.1:+5213368 | MS.gene074187:CDS |
| ACTGCAGACGCTTGCAGAGG+GGG | 0.512879 | 6.1:+5213150 | MS.gene074187:intron |
| CAAGGGAATGAAAAGTTTCA+CGG | 0.514406 | 6.1:-5204850 | None:intergenic |
| CTTGCTGTTGGATCCATGAG+AGG | 0.520661 | 6.1:+5204869 | MS.gene074187:CDS |
| TGCAGTTGAAGCATACTACC+AGG | 0.521493 | 6.1:+5213572 | MS.gene074187:CDS |
| TACTAATGCTAACTACATAT+GGG | 0.522217 | 6.1:+5213512 | MS.gene074187:CDS |
| AAGACCACGGTCAATCTCTC+CGG | 0.522416 | 6.1:-5212271 | None:intergenic |
| ATCGGATCCCCGAAACCCGT+TGG | 0.523130 | 6.1:-5202264 | None:intergenic |
| TGCGAAATGGGTCACTCCAA+CGG | 0.529959 | 6.1:+5202248 | MS.gene074187:CDS |
| ATGGTTGGCTACACTGAGAA+AGG | 0.530317 | 6.1:+5213175 | MS.gene074187:CDS |
| TAAATAAGTTCTGCTATGCT+GGG | 0.534812 | 6.1:+5206180 | MS.gene074187:CDS |
| AAGGACCAAATGAAAATCAT+GGG | 0.535637 | 6.1:+5204920 | MS.gene074187:CDS |
| TGCAGGTGCTATTGTCATGC+CGG | 0.537597 | 6.1:+5212252 | MS.gene074187:intron |
| AGAGTTCTTGCATTTCCCAC+AGG | 0.538323 | 6.1:-5205564 | None:intergenic |
| GCAGTATGGTATGCAACAAA+GGG | 0.538769 | 6.1:-5206495 | None:intergenic |
| GCATGACAATATAGATATCA+GGG | 0.542739 | 6.1:-5208397 | None:intergenic |
| TTTGGAGGAGATGAAATCCA+TGG | 0.546073 | 6.1:+5205716 | MS.gene074187:CDS |
| CTAGTAACGTATTCTGCCGT+TGG | 0.551607 | 6.1:-5206450 | None:intergenic |
| ACTTTCTAATTTCAACCTGT+GGG | 0.553816 | 6.1:+5205549 | MS.gene074187:CDS |
| ATGCATTCTAGAGCCTCTCA+TGG | 0.555834 | 6.1:-5204882 | None:intergenic |
| TACTGCATTTAATGCTGCTG+CGG | 0.567016 | 6.1:+5206512 | MS.gene074187:CDS |
| GAATGAAAAGTTTCACGGGT+TGG | 0.567753 | 6.1:-5204845 | None:intergenic |
| AAGGGAATGAAAAGTTTCAC+GGG | 0.575462 | 6.1:-5204849 | None:intergenic |
| GAGCTCCTGATTATGGCTGC+TGG | 0.578547 | 6.1:+5213360 | MS.gene074187:CDS |
| AGATGATCCAAGACTCATGT+TGG | 0.589164 | 6.1:+5214213 | MS.gene074187:CDS |
| ATGTTCTAAATCTCGAGCGA+AGG | 0.591286 | 6.1:-5214255 | None:intergenic |
| ATGAGTCTTGGATCATCTTG+AGG | 0.593442 | 6.1:-5214208 | None:intergenic |
| CAATGCTGAGAATGTGATGG+TGG | 0.593534 | 6.1:+5206398 | MS.gene074187:CDS |
| ATGTGGAGAGGTCAAAGCAA+TGG | 0.595505 | 6.1:+5206352 | MS.gene074187:CDS |
| CTTCAACTGCAGCTAACGAA+GGG | 0.596213 | 6.1:-5213560 | None:intergenic |
| GACCAGCTGCGGTCATATCA+CGG | 0.600989 | 6.1:-5206151 | None:intergenic |
| GCAGAATACGTTACTAGGCG+TGG | 0.606407 | 6.1:+5206456 | MS.gene074187:CDS |
| CTACATGCATGTGCAGCCCA+AGG | 0.607018 | 6.1:+5205774 | MS.gene074187:CDS |
| GCTTCAACTGCAGCTAACGA+AGG | 0.607314 | 6.1:-5213561 | None:intergenic |
| CTCTCATGGATCCAACAGCA+AGG | 0.608407 | 6.1:-5204868 | None:intergenic |
| GGTCACTCCAACGGGTTTCG+GGG | 0.609872 | 6.1:+5202257 | MS.gene074187:CDS |
| ATTTAATCCCAGACCAGCTG+CGG | 0.616513 | 6.1:-5206162 | None:intergenic |
| GGACTTTCTAGCTTTAGGGA+AGG | 0.623013 | 6.1:+5212305 | MS.gene074187:CDS |
| TGCATGTAGCAAGCAGATGT+AGG | 0.624370 | 6.1:-5205760 | None:intergenic |
| AATAACTCACTTTCAAACCC+TGG | 0.633843 | 6.1:-5213590 | None:intergenic |
| CATGACAATATAGATATCAG+GGG | 0.638180 | 6.1:-5208396 | None:intergenic |
| TCTCATGGATCCAACAGCAA+GGG | 0.638957 | 6.1:-5204867 | None:intergenic |
| GACTGCAGACGCTTGCAGAG+GGG | 0.655013 | 6.1:+5213149 | MS.gene074187:intron |
| GATGGTGGGTGTTACTGATG+AGG | 0.655231 | 6.1:+5206413 | MS.gene074187:CDS |
| ATGACTGCAGACGCTTGCAG+AGG | 0.659637 | 6.1:+5213147 | MS.gene074187:intron |
| GCAGTTGAAGCATACTACCA+GGG | 0.677884 | 6.1:+5213573 | MS.gene074187:CDS |
| CGCCAATGCTGAGAATGTGA+TGG | 0.683499 | 6.1:+5206395 | MS.gene074187:CDS |
| TAATGCTGCAGAAATTTATG+TGG | 0.684727 | 6.1:+5212329 | MS.gene074187:CDS |
| GTTCTCTCAATGCTCAACGA+AGG | 0.689538 | 6.1:+5202362 | MS.gene074187:CDS |
| ATATGATGCTTGATGGAGTG+AGG | 0.694446 | 6.1:+5204822 | MS.gene074187:CDS |
| GGAGTTATATAACTTACCAA+CGG | 0.695293 | 6.1:+5206434 | MS.gene074187:CDS |
| AATGCTGAGAATGTGATGGT+GGG | 0.697576 | 6.1:+5206399 | MS.gene074187:CDS |
| AGGTTATTGAGTATGTGGAG+AGG | 0.702509 | 6.1:+5206340 | MS.gene074187:intron |
| GAATACGTTACTAGGCGTGG+AGG | 0.710334 | 6.1:+5206459 | MS.gene074187:CDS |
| CATGCCGGAGAGATTGACCG+TGG | 0.731385 | 6.1:+5212267 | MS.gene074187:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.1 | gene | 5202124 | 5214279 | 5202124 | ID=MS.gene074187 |
| chr6.1 | mRNA | 5202124 | 5214279 | 5202124 | ID=MS.gene074187.t1;Parent=MS.gene074187 |
| chr6.1 | exon | 5202124 | 5202148 | 5202124 | ID=MS.gene074187.t1.exon1;Parent=MS.gene074187.t1 |
| chr6.1 | CDS | 5202124 | 5202148 | 5202124 | ID=cds.MS.gene074187.t1;Parent=MS.gene074187.t1 |
| chr6.1 | exon | 5202230 | 5202383 | 5202230 | ID=MS.gene074187.t1.exon2;Parent=MS.gene074187.t1 |
| chr6.1 | CDS | 5202230 | 5202383 | 5202230 | ID=cds.MS.gene074187.t1;Parent=MS.gene074187.t1 |
| chr6.1 | exon | 5204793 | 5204955 | 5204793 | ID=MS.gene074187.t1.exon3;Parent=MS.gene074187.t1 |
| chr6.1 | CDS | 5204793 | 5204955 | 5204793 | ID=cds.MS.gene074187.t1;Parent=MS.gene074187.t1 |
| chr6.1 | exon | 5205536 | 5205601 | 5205536 | ID=MS.gene074187.t1.exon4;Parent=MS.gene074187.t1 |
| chr6.1 | CDS | 5205536 | 5205601 | 5205536 | ID=cds.MS.gene074187.t1;Parent=MS.gene074187.t1 |
| chr6.1 | exon | 5205714 | 5205811 | 5205714 | ID=MS.gene074187.t1.exon5;Parent=MS.gene074187.t1 |
| chr6.1 | CDS | 5205714 | 5205811 | 5205714 | ID=cds.MS.gene074187.t1;Parent=MS.gene074187.t1 |
| chr6.1 | exon | 5206139 | 5206256 | 5206139 | ID=MS.gene074187.t1.exon6;Parent=MS.gene074187.t1 |
| chr6.1 | CDS | 5206139 | 5206256 | 5206139 | ID=cds.MS.gene074187.t1;Parent=MS.gene074187.t1 |
| chr6.1 | exon | 5206342 | 5206551 | 5206342 | ID=MS.gene074187.t1.exon7;Parent=MS.gene074187.t1 |
| chr6.1 | CDS | 5206342 | 5206551 | 5206342 | ID=cds.MS.gene074187.t1;Parent=MS.gene074187.t1 |
| chr6.1 | exon | 5208353 | 5208429 | 5208353 | ID=MS.gene074187.t1.exon8;Parent=MS.gene074187.t1 |
| chr6.1 | CDS | 5208353 | 5208429 | 5208353 | ID=cds.MS.gene074187.t1;Parent=MS.gene074187.t1 |
| chr6.1 | exon | 5212257 | 5212350 | 5212257 | ID=MS.gene074187.t1.exon9;Parent=MS.gene074187.t1 |
| chr6.1 | CDS | 5212257 | 5212350 | 5212257 | ID=cds.MS.gene074187.t1;Parent=MS.gene074187.t1 |
| chr6.1 | exon | 5213157 | 5213222 | 5213157 | ID=MS.gene074187.t1.exon10;Parent=MS.gene074187.t1 |
| chr6.1 | CDS | 5213157 | 5213222 | 5213157 | ID=cds.MS.gene074187.t1;Parent=MS.gene074187.t1 |
| chr6.1 | exon | 5213312 | 5213389 | 5213312 | ID=MS.gene074187.t1.exon11;Parent=MS.gene074187.t1 |
| chr6.1 | CDS | 5213312 | 5213389 | 5213312 | ID=cds.MS.gene074187.t1;Parent=MS.gene074187.t1 |
| chr6.1 | exon | 5213501 | 5213602 | 5213501 | ID=MS.gene074187.t1.exon12;Parent=MS.gene074187.t1 |
| chr6.1 | CDS | 5213501 | 5213602 | 5213501 | ID=cds.MS.gene074187.t1;Parent=MS.gene074187.t1 |
| chr6.1 | exon | 5214196 | 5214279 | 5214196 | ID=MS.gene074187.t1.exon13;Parent=MS.gene074187.t1 |
| chr6.1 | CDS | 5214196 | 5214279 | 5214196 | ID=cds.MS.gene074187.t1;Parent=MS.gene074187.t1 |
| Gene Sequence |
| Protein sequence |