AlfalfaGEDB | MS.gene42101

M. sativa cultivar XinJiangDaYe / MS.gene42101

KEGG: -
GO: GO:0003674 GO:0005488 GO:0005515
PFAM: PF12854.10 PF13041.9 PF13812.9

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene42101.t1	XP_024625347.1	96.2	156	6	0	1	156	116	271	7.90E-79	304.3

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene42101.t1	Q8L6Y7	42.6	155	89	0	3	157	114	268	9.0e-31	136.0

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene42101.t1	G7KW12	96.2	156	6	0	1	156	116	271	5.7e-79	304.3

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049378	MS.gene42101	0.80207	6.68E-49	-1.69E-46
MS.gene049382	MS.gene42101	0.833536	5.04E-56	-1.69E-46
MS.gene049756	MS.gene42101	0.808461	3.06E-50	-1.69E-46
MS.gene049758	MS.gene42101	0.816116	6.53E-52	-1.69E-46
MS.gene04984	MS.gene42101	0.807457	5.01E-50	-1.69E-46
MS.gene050227	MS.gene42101	0.804391	2.21E-49	-1.69E-46
MS.gene050623	MS.gene42101	-0.824903	6.27E-54	-1.69E-46
MS.gene050719	MS.gene42101	0.807327	5.34E-50	-1.69E-46
MS.gene050721	MS.gene42101	0.807755	4.33E-50	-1.69E-46
MS.gene050724	MS.gene42101	0.80662	7.53E-50	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene074187	MS.gene42101	PPI
MS.gene42101	MS.gene074188	PPI
MS.gene80027	MS.gene42101	PPI
MS.gene80886	MS.gene42101	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene42101.t1	MTR_7g072070	96.000	375	15	0	1	375	116	490	0.0	714
MS.gene42101.t1	MTR_6g079180	27.485	342	245	2	16	357	26	364	6.06e-41	148
MS.gene42101.t1	MTR_6g079180	25.152	330	234	4	12	336	57	378	2.02e-30	120
MS.gene42101.t1	MTR_6g079180	25.869	259	157	1	134	357	1	259	2.04e-24	103
MS.gene42101.t1	MTR_6g079210	27.485	342	245	2	16	357	26	364	6.22e-41	149
MS.gene42101.t1	MTR_6g079210	25.155	322	228	4	12	328	57	370	5.60e-31	122
MS.gene42101.t1	MTR_6g079210	25.168	298	220	2	12	309	92	386	1.20e-25	107
MS.gene42101.t1	MTR_6g079210	25.869	259	157	1	134	357	1	259	1.00e-24	104
MS.gene42101.t1	MTR_8g105170	30.145	345	238	2	13	357	223	564	8.03e-41	154
MS.gene42101.t1	MTR_8g105170	27.019	322	232	2	36	357	316	634	6.72e-36	139

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene42101.t1	AT2G38420	46.726	336	179	0	3	338	114	449	1.57e-103	313
MS.gene42101.t1	AT5G39710	30.458	371	239	8	3	364	211	571	1.65e-43	161
MS.gene42101.t1	AT5G39710	28.159	277	179	3	101	357	111	387	7.39e-32	127
MS.gene42101.t1	AT5G39710	26.384	307	201	3	70	357	347	647	9.96e-31	124
MS.gene42101.t1	AT5G39710	22.647	340	239	4	29	350	412	745	5.36e-19	89.4
MS.gene42101.t1	AT1G05670	31.010	287	196	1	71	357	354	638	1.55e-41	155
MS.gene42101.t1	AT1G05670	27.089	395	244	4	1	357	215	603	8.62e-37	142
MS.gene42101.t1	AT1G05670	25.625	320	227	4	8	322	360	673	5.30e-29	119
MS.gene42101.t1	AT1G05670	31.010	287	196	1	71	357	354	638	1.55e-41	155
MS.gene42101.t1	AT1G05670	27.089	395	244	4	1	357	215	603	8.62e-37	142

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Find 62 sgRNAs with CRISPR-Local

Find 91 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATGATTTGACTAGCGTCG+AGG	0.684228	7.3:+32589426	MS.gene42101:CDS
AAATTCAAACTACAAACAGT+TGG	0.617121	7.3:-32589166	None:intergenic
AACAAATGTGGTTTCTGAAT+AGG	0.395887	7.3:-32590172	None:intergenic
AAGCAGTGCTTCCCAAACCT+TGG	0.575547	7.3:-32590127	None:intergenic
AATGAAGGAGATGAGGTTGA+AGG	0.515393	7.3:+32589879	MS.gene42101:CDS
ACATATAGGATCATGCTTGA+TGG	0.418497	7.3:+32589922	MS.gene42101:CDS
ACATTATAAGTATAAACATC+AGG	0.549214	7.3:-32589700	None:intergenic
ACTTAAGATTGTTGTTTCTA+TGG	0.279821	7.3:+32589765	MS.gene42101:CDS
ACTTATAATGTGTATATAAA+TGG	0.195753	7.3:+32589712	MS.gene42101:CDS
AGAGGGTAATGAAGGAGATG+AGG	0.565050	7.3:+32589872	MS.gene42101:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACAAATGTGGTTTCTGAAT+AGG	-	chr7.3:32590175-32590194	None:intergenic	30.0%
AGCTAAACTTGCATACATAT+AGG	+	chr7.3:32589908-32589927	MS.gene42101:CDS	30.0%
ATGAATTGTATGGTAGAAGA+TGG	+	chr7.3:32589349-32589368	MS.gene42101:CDS	30.0%
CACCAAAAACCTAATCATAT+TGG	-	chr7.3:32589512-32589531	None:intergenic	30.0%
CTATCAAATGTTGAAGATCT+AGG	-	chr7.3:32590018-32590037	None:intergenic	30.0%
TATGAATGGAGATTTAGGTA+AGG	+	chr7.3:32589846-32589865	MS.gene42101:CDS	30.0%
TATTCAGAAACCACATTTGT+TGG	+	chr7.3:32590174-32590193	MS.gene42101:CDS	30.0%
TGGATTGTACCAATATGATT+AGG	+	chr7.3:32589500-32589519	MS.gene42101:CDS	30.0%
TTGAGTGGAATTGTTAAAGA+AGG	+	chr7.3:32589622-32589641	MS.gene42101:CDS	30.0%
TTGTGTATGAATGGAGATTT+AGG	+	chr7.3:32589841-32589860	MS.gene42101:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7.3	gene	32589079	32590215	32589079	ID=MS.gene42101
chr7.3	mRNA	32589079	32590215	32589079	ID=MS.gene42101.t1;Parent=MS.gene42101
chr7.3	exon	32589079	32590215	32589079	ID=MS.gene42101.t1.exon1;Parent=MS.gene42101.t1
chr7.3	CDS	32589079	32590215	32589079	ID=cds.MS.gene42101.t1;Parent=MS.gene42101.t1

Gene Sequence

>MS.gene42101

ATGTATTTGATTAGATTCTATGGTTTTAATGATAGGGTTCAAGATGCTGTTGATTTGTTTTTTAGAATTCCGAGGTTTAGATGCACACCAACTGTTTGTAGTTTGAATTTGTTGCTTTCATTGCTTTGTAGGAAGAGGGAGTGTTTGAAAATGGTTCCGGATATTTTGTTGAAAAGTCGGGATTTGAAGATTCGTCTTGAGGAATCGAGTTTTTGGGTTTTGATTAAGGCGTTGTGTAGGATTAAGAGAGTTGATTATGCTATTAAGATGATGAATTGTATGGTAGAAGATGGTTATGGTTTGGATGATAAGATATGTTCTTTGATAATATCGTCGTTGTTTGAGCAAAATGATTTGACTAGCGTCGAGGCTTTGGTTGTTTGGGGAAATATGAGGAAACTAGGGTTTTGTCCGGGTGTAATGGATTGTACCAATATGATTAGGTTTTTGGTGAAGGGAGGGAAGGGTAAGGATGCTTTGGAGATTTTGAATCAGCTTAAGGAAGATGGAATTAAGCCTGATATTGTTTGTTATACTATTGTTTTGAGTGGAATTGTTAAAGAAGGTGATTATGTGAAGTTAGATGAATTGTTTGATGAAATACTTGTATTAGGACTCGTTCCTGATGTTTATACTTATAATGTGTATATAAATGGTTTGTGTAAGCAGAATAATTTTGATGACGCACTTAAGATTGTTGTTTCTATGGAAAAATTAGGATGCAAACCAAATGTGGTTACTTATAATACTTTATTAGGTGCATTGTGTATGAATGGAGATTTAGGTAAGGCAAAGAGGGTAATGAAGGAGATGAGGTTGAAGGGTGTTGAGCTAAACTTGCATACATATAGGATCATGCTTGATGGTTTGATTGGTAAAGGTGAGATTGGTGAAGCATGTGTTTTCTTGGAGGAAATGTTGGAGAAGTGTTTTTATCCTAGATCTTCAACATTTGATAGTATCGTACATCAAATGTGCCAAAAGGGTTTGATTAGTGATGCACTTGTGTTGATGAATAAAATTGCTGAAAAAAGTTTTGATCCAGGAGCCAAGGTTTGGGAAGCACTGCTTCTTAACTCAGAATCTAAGGTTGCCTATTCAGAAACCACATTTGTTGGATTGTTGAGGCTAAAATAA

Protein sequence

>MS.gene42101.t1

MYLIRFYGFNDRVQDAVDLFFRIPRFRCTPTVCSLNLLLSLLCRKRECLKMVPDILLKSRDLKIRLEESSFWVLIKALCRIKRVDYAIKMMNCMVEDGYGLDDKICSLIISSLFEQNDLTSVEALVVWGNMRKLGFCPGVMDCTNMIRFLVKGGKGKDALEILNQLKEDGIKPDIVCYTIVLSGIVKEGDYVKLDELFDEILVLGLVPDVYTYNVYINGLCKQNNFDDALKIVVSMEKLGCKPNVVTYNTLLGALCMNGDLGKAKRVMKEMRLKGVELNLHTYRIMLDGLIGKGEIGEACVFLEEMLEKCFYPRSSTFDSIVHQMCQKGLISDALVLMNKIAEKSFDPGAKVWEALLLNSESKVAYSETTFVGLLRLK