Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene07419.t1 | XP_004495420.1 | 68.8 | 93 | 14 | 2 | 1 | 91 | 1 | 80 | 3.10E-21 | 110.9 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene07419.t1 | Q93V47 | 60.3 | 68 | 14 | 1 | 23 | 90 | 18 | 72 | 3.5e-13 | 75.5 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene07419.t1 | A0A1S2XXD1 | 68.8 | 93 | 14 | 2 | 1 | 91 | 1 | 80 | 2.2e-21 | 110.9 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049821 | MS.gene07419 | -0.817575 | 3.07E-52 | -1.69E-46 |
MS.gene060634 | MS.gene07419 | 0.826498 | 2.62E-54 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene07419.t1 | MTR_1g076580 | 77.660 | 94 | 5 | 2 | 1 | 91 | 1 | 81 | 1.35e-37 | 121 |
MS.gene07419.t1 | MTR_1g076580 | 76.596 | 94 | 6 | 2 | 1 | 91 | 1 | 81 | 8.79e-37 | 119 |
MS.gene07419.t1 | MTR_1g076640 | 64.516 | 93 | 17 | 4 | 1 | 90 | 1 | 80 | 2.37e-26 | 92.8 |
MS.gene07419.t1 | MTR_1g076640 | 66.667 | 93 | 15 | 3 | 1 | 90 | 1 | 80 | 3.51e-25 | 90.9 |
MS.gene07419.t1 | MTR_1g076640 | 64.557 | 79 | 12 | 4 | 1 | 76 | 1 | 66 | 5.82e-18 | 71.2 |
MS.gene07419.t1 | MTR_1g076640 | 74.000 | 50 | 10 | 2 | 1 | 47 | 1 | 50 | 1.37e-15 | 65.1 |
MS.gene07419.t1 | MTR_1g071100 | 45.333 | 75 | 28 | 1 | 16 | 90 | 20 | 81 | 1.58e-15 | 66.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene07419.t1 | AT3G22942 | 60.294 | 68 | 14 | 1 | 23 | 90 | 18 | 72 | 1.94e-14 | 63.2 |
MS.gene07419.t1 | AT3G63420 | 41.250 | 80 | 34 | 1 | 12 | 91 | 5 | 71 | 2.02e-12 | 58.2 |
MS.gene07419.t1 | AT3G63420 | 41.250 | 80 | 34 | 1 | 12 | 91 | 5 | 71 | 2.02e-12 | 58.2 |
MS.gene07419.t1 | AT3G63420 | 42.500 | 80 | 33 | 2 | 12 | 91 | 45 | 111 | 1.54e-11 | 56.6 |
Find 23 sgRNAs with CRISPR-Local
Find 145 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTCCATGTACTTCAAGTTTA+AGG | 0.121345 | 1.2:-63884600 | MS.gene07419:intron |
ATAGGAGAGGTACTTGTAAT+TGG | 0.235970 | 1.2:-63884631 | MS.gene07419:intron |
AAAGTGGGTCGTCGGGTTAT+CGG | 0.364117 | 1.2:+63885022 | None:intergenic |
TAGGAGAGGTACTTGTAATT+GGG | 0.374789 | 1.2:-63884630 | MS.gene07419:CDS |
GGATACATGCTGAACTTAAA+CGG | 0.451608 | 1.2:-63884959 | MS.gene07419:CDS |
TACAATGGAAGTAATGGGTC+AGG | 0.462616 | 1.2:+63882753 | None:intergenic |
GCTGGAAAAGCTTGAGAGGA+TGG | 0.463059 | 1.2:-63882915 | MS.gene07419:CDS |
AAATTCAATGTAGGAAGAGC+TGG | 0.464733 | 1.2:-63882933 | MS.gene07419:intron |
ACTGAACAAAGTGGGTCGTC+GGG | 0.478830 | 1.2:+63885015 | None:intergenic |
CAGATACAAGAGGGAAACAT+AGG | 0.483669 | 1.2:-63884980 | MS.gene07419:CDS |
TGCTTGGCAATGTCGAGAAA+AGG | 0.501990 | 1.2:-63882776 | MS.gene07419:CDS |
GACTGAACAAAGTGGGTCGT+CGG | 0.531551 | 1.2:+63885014 | None:intergenic |
AACTTGAAGTACATGGAAGA+TGG | 0.532610 | 1.2:+63884605 | None:intergenic |
TTAGCCTCAGAAAATGCAAT+CGG | 0.537051 | 1.2:-63885057 | None:intergenic |
ACATGCTGAACTTAAACGGT+TGG | 0.538744 | 1.2:-63884955 | MS.gene07419:CDS |
CCTCAGAAAATGCAATCGGA+TGG | 0.564403 | 1.2:-63885053 | None:intergenic |
GACCTTAAACTTGAAGTACA+TGG | 0.565014 | 1.2:+63884598 | None:intergenic |
AAGAGCTGGAAAAGCTTGAG+AGG | 0.574159 | 1.2:-63882919 | MS.gene07419:CDS |
CTCAGAAAATGCAATCGGAT+GGG | 0.599299 | 1.2:-63885052 | None:intergenic |
AGGAGAGGTACTTGTAATTG+GGG | 0.600323 | 1.2:-63884629 | MS.gene07419:CDS |
AAGACTGAGACTGAACAAAG+TGG | 0.627696 | 1.2:+63885006 | None:intergenic |
AGACTGAGACTGAACAAAGT+GGG | 0.647300 | 1.2:+63885007 | None:intergenic |
AACGGTTGGAACAAGAAACA+AGG | 0.682214 | 1.2:-63884941 | MS.gene07419:intron |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | AAAGTTCTTTTTTTAATAAT+TGG | + | chr1.2:63883627-63883646 | None:intergenic | 10.0% |
!!! | AAGTTCTTTTTTTAATAATT+GGG | + | chr1.2:63883626-63883645 | None:intergenic | 10.0% |
!! | AAAATAATCTTAACTAGTTA+AGG | + | chr1.2:63884650-63884669 | None:intergenic | 15.0% |
!!! | AAAAAAAGAACTTTTCTTTT+TGG | - | chr1.2:63883633-63883652 | MS.gene07419:intron | 15.0% |
!!! | AAAAAAGAACTTTTCTTTTT+GGG | - | chr1.2:63883634-63883653 | MS.gene07419:intron | 15.0% |
!!! | TCAATTAAAGCTAAATTTTA+AGG | + | chr1.2:63883041-63883060 | None:intergenic | 15.0% |
!!! | TGAATTTTTTGTTTTTAGTT+TGG | - | chr1.2:63883086-63883105 | MS.gene07419:intron | 15.0% |
!! | ATTCACTATAAATTCAATGT+AGG | - | chr1.2:63884854-63884873 | MS.gene07419:intron | 20.0% |
!! | TTAACGAGTAATAGTAAAAT+GGG | - | chr1.2:63882993-63883012 | MS.gene07419:intron | 20.0% |
!! | TTGATCTTATTAAAGATTCA+GGG | - | chr1.2:63884222-63884241 | MS.gene07419:intron | 20.0% |
!!! | AAAAAGAACTTTTCTTTTTG+GGG | - | chr1.2:63883635-63883654 | MS.gene07419:intron | 20.0% |
!!! | TAAAATTTTGTTGTGTTTGT+TGG | + | chr1.2:63884196-63884215 | None:intergenic | 20.0% |
!!! | TCAACTTTTGATAGTTAAAA+GGG | - | chr1.2:63883219-63883238 | MS.gene07419:intron | 20.0% |
!!! | TGAATTTTTAGTGAACTATA+TGG | - | chr1.2:63883337-63883356 | MS.gene07419:intron | 20.0% |
!!! | TTAGCTTTAATTGATTTCTT+GGG | - | chr1.2:63883047-63883066 | MS.gene07419:intron | 20.0% |
!!! | TTTAGCTTTAATTGATTTCT+TGG | - | chr1.2:63883046-63883065 | MS.gene07419:intron | 20.0% |
! | ACTGAAAAGTAATGACAATT+TGG | - | chr1.2:63883125-63883144 | MS.gene07419:intron | 25.0% |
! | AGAAAGAAAGACGAAAATTA+AGG | + | chr1.2:63883852-63883871 | None:intergenic | 25.0% |
! | ATGAGTAGAACAAATATTCA+AGG | + | chr1.2:63883304-63883323 | None:intergenic | 25.0% |
! | CTGAAAAGTAATGACAATTT+GGG | - | chr1.2:63883126-63883145 | MS.gene07419:intron | 25.0% |
! | CTTGATCTTATTAAAGATTC+AGG | - | chr1.2:63884221-63884240 | MS.gene07419:intron | 25.0% |
! | GTTAACGAGTAATAGTAAAA+TGG | - | chr1.2:63882992-63883011 | MS.gene07419:intron | 25.0% |
! | TAAACATACACTATTAGAGT+AGG | - | chr1.2:63883545-63883564 | MS.gene07419:intron | 25.0% |
! | TCAAATTTGATCAGACATTA+TGG | + | chr1.2:63884957-63884976 | None:intergenic | 25.0% |
! | TGAAAAGTAATGACAATTTG+GGG | - | chr1.2:63883127-63883146 | MS.gene07419:intron | 25.0% |
! | TTTGTAATAACAGCAACATA+AGG | - | chr1.2:63883782-63883801 | MS.gene07419:intron | 25.0% |
!! | ATCATCTTTTCTGTAAAAAG+TGG | + | chr1.2:63884766-63884785 | None:intergenic | 25.0% |
!! | TTTTACAGAAAAGATGATTG+TGG | - | chr1.2:63884768-63884787 | MS.gene07419:intron | 25.0% |
!!! | CATTCATTTCTGAGATATAT+AGG | - | chr1.2:63884718-63884737 | MS.gene07419:intron | 25.0% |
!!! | GTCAACTTTTGATAGTTAAA+AGG | - | chr1.2:63883218-63883237 | MS.gene07419:intron | 25.0% |
AACCTCTTGTGTAGAAAATA+TGG | + | chr1.2:63884143-63884162 | None:intergenic | 30.0% | |
AAGAACAAAACTCCAAAACA+TGG | + | chr1.2:63882932-63882951 | None:intergenic | 30.0% | |
AATTACGAATTAATCAAGGC+AGG | + | chr1.2:63884523-63884542 | None:intergenic | 30.0% | |
ACGAAAATTAAGGCGAAAAA+TGG | + | chr1.2:63883842-63883861 | None:intergenic | 30.0% | |
ATAAGCCAGTTACCTAAAAT+TGG | + | chr1.2:63884580-63884599 | None:intergenic | 30.0% | |
CGATTAAGTTTGAATTTCTC+TGG | - | chr1.2:63884980-63884999 | MS.gene07419:CDS | 30.0% | |
CTTGTGTAGAAAATATGGTA+AGG | + | chr1.2:63884138-63884157 | None:intergenic | 30.0% | |
GGATAGACATTTATCAGTAA+TGG | + | chr1.2:63884271-63884290 | None:intergenic | 30.0% | |
GGCAAATTACGAATTAATCA+AGG | + | chr1.2:63884527-63884546 | None:intergenic | 30.0% | |
GTGCCATCAAACAAAAAAAT+GGG | - | chr1.2:63884038-63884057 | MS.gene07419:intron | 30.0% | |
TGTGCCATCAAACAAAAAAA+TGG | - | chr1.2:63884037-63884056 | MS.gene07419:intron | 30.0% | |
! | ATGTCTGAAGTTGATTGATA+AGG | - | chr1.2:63884551-63884570 | MS.gene07419:intron | 30.0% |
! | TACCATATTTTCTACACAAG+AGG | - | chr1.2:63884138-63884157 | MS.gene07419:intron | 30.0% |
! | TCTTCTTCTTTACCATGTTT+TGG | - | chr1.2:63882917-63882936 | MS.gene07419:CDS | 30.0% |
! | TCTTTTCTGTAAAAAGTGGT+TGG | + | chr1.2:63884762-63884781 | None:intergenic | 30.0% |
! | TTCCATGTACTTCAAGTTTA+AGG | - | chr1.2:63883196-63883215 | MS.gene07419:intron | 30.0% |
!!! | AGTCTTTTTCAGATACAAGA+GGG | - | chr1.2:63882807-63882826 | MS.gene07419:intron | 30.0% |
!!! | TATATAGGTTGTTTTTCCAG+CGG | - | chr1.2:63884733-63884752 | MS.gene07419:intron | 30.0% |
AAATTCAATGTAGGAAGAGC+TGG | - | chr1.2:63884863-63884882 | MS.gene07419:intron | 35.0% | |
AACCTTAAATATTCCAACGC+AGG | + | chr1.2:63884329-63884348 | None:intergenic | 35.0% | |
AACTTGAAGTACATGGAAGA+TGG | + | chr1.2:63883194-63883213 | None:intergenic | 35.0% | |
ACAAAGTCTCTCATAGCAAT+GGG | + | chr1.2:63883674-63883693 | None:intergenic | 35.0% | |
AGGAGGGAACTGAAAAATTA+TGG | + | chr1.2:63884503-63884522 | None:intergenic | 35.0% | |
ATTTCTTGGGATACTCTTCT+GGG | - | chr1.2:63883060-63883079 | MS.gene07419:intron | 35.0% | |
CAGATAATTAGTGCTCATGA+TGG | + | chr1.2:63884677-63884696 | None:intergenic | 35.0% | |
CCTCAAATTGTTCAAAAGTC+AGG | + | chr1.2:63883918-63883937 | None:intergenic | 35.0% | |
GACAAAACATTTGCAACATG+AGG | + | chr1.2:63883282-63883301 | None:intergenic | 35.0% | |
GACCTTAAACTTGAAGTACA+TGG | + | chr1.2:63883201-63883220 | None:intergenic | 35.0% | |
GCAGAACAAGAACTCAAAAA+AGG | + | chr1.2:63884380-63884399 | None:intergenic | 35.0% | |
GGATACATGCTGAACTTAAA+CGG | - | chr1.2:63882837-63882856 | MS.gene07419:intron | 35.0% | |
GGGAATTATGTTGTTGTGAT+AGG | - | chr1.2:63883147-63883166 | MS.gene07419:intron | 35.0% | |
GGGTCTTGATAAATTAGTGT+TGG | - | chr1.2:63884242-63884261 | MS.gene07419:intron | 35.0% | |
GTAGTTGCGTTATGCTTATT+TGG | - | chr1.2:63883958-63883977 | MS.gene07419:intron | 35.0% | |
GTGTTTAAGTCAATTGCACA+GGG | + | chr1.2:63884452-63884471 | None:intergenic | 35.0% | |
TACCTGCGTTGGAATATTTA+AGG | - | chr1.2:63884324-63884343 | MS.gene07419:intron | 35.0% | |
TATTTGCATACTGTGTCCAT+TGG | + | chr1.2:63884474-63884493 | None:intergenic | 35.0% | |
TCATGAGCACTAATTATCTG+TGG | - | chr1.2:63884677-63884696 | MS.gene07419:intron | 35.0% | |
TCTAGATGACATGTTCTGTT+TGG | + | chr1.2:63884292-63884311 | None:intergenic | 35.0% | |
TGTTTAAGTCAATTGCACAG+GGG | + | chr1.2:63884451-63884470 | None:intergenic | 35.0% | |
TTATGTTGTTGTGATAGGAG+AGG | - | chr1.2:63883152-63883171 | MS.gene07419:intron | 35.0% | |
TTTCTGTAAAAAGTGGTTGG+AGG | + | chr1.2:63884759-63884778 | None:intergenic | 35.0% | |
! | ACAAGAAACAAGGTACTTAG+AGG | - | chr1.2:63882865-63882884 | MS.gene07419:intron | 35.0% |
! | AGGGTCTTATGAAAGATTCA+GGG | - | chr1.2:63884169-63884188 | MS.gene07419:intron | 35.0% |
! | CAAGAACTCAAAAAAGGTGT+TGG | + | chr1.2:63884374-63884393 | None:intergenic | 35.0% |
! | CCTGACTTTTGAACAATTTG+AGG | - | chr1.2:63883915-63883934 | MS.gene07419:intron | 35.0% |
! | GCAATTGACTTAAACACCAA+TGG | - | chr1.2:63884455-63884474 | MS.gene07419:intron | 35.0% |
! | TCTGAAGTTGATTGATAAGG+TGG | - | chr1.2:63884554-63884573 | MS.gene07419:intron | 35.0% |
! | TTGATAAGGTGGCCAATTTT+AGG | - | chr1.2:63884565-63884584 | MS.gene07419:intron | 35.0% |
!! | ATAGGAGAGGTACTTGTAAT+TGG | - | chr1.2:63883165-63883184 | MS.gene07419:intron | 35.0% |
!! | TAGGAGAGGTACTTGTAATT+GGG | - | chr1.2:63883166-63883185 | MS.gene07419:intron | 35.0% |
!!! | CAGTCTTTTTCAGATACAAG+AGG | - | chr1.2:63882806-63882825 | MS.gene07419:intron | 35.0% |
!!! | CTGCCCATTTTTTTGTTTGA+TGG | + | chr1.2:63884044-63884063 | None:intergenic | 35.0% |
!!! | TTTTGAGTTCTTGTTCTGCT+CGG | - | chr1.2:63884381-63884400 | MS.gene07419:intron | 35.0% |
AACGGTTGGAACAAGAAACA+AGG | - | chr1.2:63882855-63882874 | MS.gene07419:intron | 40.0% | |
AAGACTGAGACTGAACAAAG+TGG | + | chr1.2:63882793-63882812 | None:intergenic | 40.0% | |
ACATGCTGAACTTAAACGGT+TGG | - | chr1.2:63882841-63882860 | MS.gene07419:intron | 40.0% | |
ACGAATTAATCAAGGCAGGA+GGG | + | chr1.2:63884519-63884538 | None:intergenic | 40.0% | |
AGACTGAGACTGAACAAAGT+GGG | + | chr1.2:63882792-63882811 | None:intergenic | 40.0% | |
CAAAGTCTCTCATAGCAATG+GGG | + | chr1.2:63883673-63883692 | None:intergenic | 40.0% | |
CAATCAACTTCAGACATTGC+TGG | + | chr1.2:63884548-63884567 | None:intergenic | 40.0% | |
CAGATACAAGAGGGAAACAT+AGG | - | chr1.2:63882816-63882835 | MS.gene07419:intron | 40.0% | |
CTGAATCTTTCATAAGACCC+TGG | + | chr1.2:63884170-63884189 | None:intergenic | 40.0% | |
GACAAAGTCTCTCATAGCAA+TGG | + | chr1.2:63883675-63883694 | None:intergenic | 40.0% | |
GAGACTTGATGTTTGACGTT+TGG | - | chr1.2:63883882-63883901 | MS.gene07419:intron | 40.0% | |
GATTTCTTGGGATACTCTTC+TGG | - | chr1.2:63883059-63883078 | MS.gene07419:intron | 40.0% | |
GCACATGTTTGTATGCACAT+TGG | - | chr1.2:63884013-63884032 | MS.gene07419:intron | 40.0% | |
GGGGATTTGAGAAACATCAA+TGG | + | chr1.2:63884432-63884451 | None:intergenic | 40.0% | |
GGTGTTTAAGTCAATTGCAC+AGG | + | chr1.2:63884453-63884472 | None:intergenic | 40.0% | |
GTTGCGTACAAAAGACCAAA+TGG | + | chr1.2:63884116-63884135 | None:intergenic | 40.0% | |
TACGAATTAATCAAGGCAGG+AGG | + | chr1.2:63884520-63884539 | None:intergenic | 40.0% | |
TGAGCACTAATTATCTGTGG+AGG | - | chr1.2:63884680-63884699 | MS.gene07419:intron | 40.0% | |
TTCTTGTTCTGCTCGGTTAA+GGG | - | chr1.2:63884388-63884407 | MS.gene07419:intron | 40.0% | |
! | AACTGGCTTATATCAGTCGT+TGG | - | chr1.2:63884589-63884608 | MS.gene07419:intron | 40.0% |
! | CAGGGTCTTATGAAAGATTC+AGG | - | chr1.2:63884168-63884187 | MS.gene07419:intron | 40.0% |
! | GAAACAAGGTACTTAGAGGT+TGG | - | chr1.2:63882869-63882888 | MS.gene07419:intron | 40.0% |
! | GTCTCTTTTGCTCACTCTAT+AGG | + | chr1.2:63883990-63884009 | None:intergenic | 40.0% |
! | TACACAAGAGGTTGTTTCCA+GGG | - | chr1.2:63884150-63884169 | MS.gene07419:intron | 40.0% |
!! | AACTCAAAAAAGGTGTTGGC+AGG | + | chr1.2:63884370-63884389 | None:intergenic | 40.0% |
!! | AGGAGAGGTACTTGTAATTG+GGG | - | chr1.2:63883167-63883186 | MS.gene07419:intron | 40.0% |
!! | TACAATGGAAGTAATGGGTC+AGG | + | chr1.2:63885046-63885065 | None:intergenic | 40.0% |
!!! | TTTTCTTTTTGGGGTAGCCA+AGG | - | chr1.2:63883644-63883663 | MS.gene07419:intron | 40.0% |
AAGAGCTGGAAAAGCTTGAG+AGG | - | chr1.2:63884877-63884896 | MS.gene07419:intron | 45.0% | |
GCTATGAGAGACTTTGTCTC+TGG | - | chr1.2:63883677-63883696 | MS.gene07419:intron | 45.0% | |
GTTCTTGTTCTGCTCGGTTA+AGG | - | chr1.2:63884387-63884406 | MS.gene07419:intron | 45.0% | |
TGATGTGACATTACCTGCGT+TGG | - | chr1.2:63884313-63884332 | MS.gene07419:intron | 45.0% | |
TGCTTGGCAATGTCGAGAAA+AGG | - | chr1.2:63885020-63885039 | MS.gene07419:CDS | 45.0% | |
! | AGACTTTGTCTCTGGTTCAG+GGG | - | chr1.2:63883685-63883704 | MS.gene07419:intron | 45.0% |
! | AGAGACTTTGTCTCTGGTTC+AGG | - | chr1.2:63883683-63883702 | MS.gene07419:intron | 45.0% |
! | CTACACAAGAGGTTGTTTCC+AGG | - | chr1.2:63884149-63884168 | MS.gene07419:intron | 45.0% |
! | GAGACTTTGTCTCTGGTTCA+GGG | - | chr1.2:63883684-63883703 | MS.gene07419:intron | 45.0% |
! | GGATGAGTTTTGCTGAGACT+TGG | - | chr1.2:63883936-63883955 | MS.gene07419:intron | 45.0% |
!! | GGTGGCCAATTTTAGGTAAC+TGG | - | chr1.2:63884572-63884591 | MS.gene07419:intron | 45.0% |
!!! | GTTTGTTTTGCCAGGATGCT+TGG | - | chr1.2:63885004-63885023 | MS.gene07419:CDS | 45.0% |
!!! | TCTCTGGTGTTTGTTTTGCC+AGG | - | chr1.2:63884996-63885015 | MS.gene07419:CDS | 45.0% |
AAAGTGGGTCGTCGGGTTAT+CGG | + | chr1.2:63882777-63882796 | None:intergenic | 50.0% | |
ACTGAACAAAGTGGGTCGTC+GGG | + | chr1.2:63882784-63882803 | None:intergenic | 50.0% | |
AGTCTCTCATAGCAATGGGG+TGG | + | chr1.2:63883670-63883689 | None:intergenic | 50.0% | |
GACTGAACAAAGTGGGTCGT+CGG | + | chr1.2:63882785-63882804 | None:intergenic | 50.0% | |
GCTGGAAAAGCTTGAGAGGA+TGG | - | chr1.2:63884881-63884900 | MS.gene07419:intron | 50.0% | |
TGGTTCAGGGGTCTTCACTT+AGG | - | chr1.2:63883697-63883716 | MS.gene07419:intron | 50.0% | |
!! | ATGCGGGAGCATTAGTGCAA+CGG | + | chr1.2:63884068-63884087 | None:intergenic | 50.0% |
AAAAAGTGGTTGGAGGCCGC+TGG | + | chr1.2:63884752-63884771 | None:intergenic | 55.0% | |
ACTAATGCTCCCGCATACGC+AGG | - | chr1.2:63884072-63884091 | MS.gene07419:intron | 55.0% | |
CAAATGGTGAGACCCCTTCC+TGG | + | chr1.2:63884100-63884119 | None:intergenic | 55.0% | |
CAGGAAGGGGTCTCACCATT+TGG | - | chr1.2:63884098-63884117 | MS.gene07419:intron | 55.0% | |
CTAATGCTCCCGCATACGCA+GGG | - | chr1.2:63884073-63884092 | MS.gene07419:intron | 55.0% | |
CTCGACATTGCCAAGCATCC+TGG | + | chr1.2:63885017-63885036 | None:intergenic | 55.0% | |
TCATAGCAATGGGGTGGCCT+TGG | + | chr1.2:63883664-63883683 | None:intergenic | 55.0% | |
!! | TGCGGGAGCATTAGTGCAAC+GGG | + | chr1.2:63884067-63884086 | None:intergenic | 55.0% |
CATACGCAGGGTCCAGGAAG+GGG | - | chr1.2:63884085-63884104 | MS.gene07419:intron | 60.0% | |
CTTCCTGGACCCTGCGTATG+CGG | + | chr1.2:63884085-63884104 | None:intergenic | 60.0% | |
GCATACGCAGGGTCCAGGAA+GGG | - | chr1.2:63884084-63884103 | MS.gene07419:intron | 60.0% | |
TTCCTGGACCCTGCGTATGC+GGG | + | chr1.2:63884084-63884103 | None:intergenic | 60.0% | |
CGCATACGCAGGGTCCAGGA+AGG | - | chr1.2:63884083-63884102 | MS.gene07419:intron | 65.0% | |
CTCCCGCATACGCAGGGTCC+AGG | - | chr1.2:63884079-63884098 | MS.gene07419:intron | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.2 | gene | 63882752 | 63885066 | 63882752 | ID=MS.gene07419 |
chr1.2 | mRNA | 63882752 | 63885066 | 63882752 | ID=MS.gene07419.t1;Parent=MS.gene07419 |
chr1.2 | exon | 63884942 | 63885066 | 63884942 | ID=MS.gene07419.t1.exon1;Parent=MS.gene07419.t1 |
chr1.2 | CDS | 63884942 | 63885066 | 63884942 | ID=cds.MS.gene07419.t1;Parent=MS.gene07419.t1 |
chr1.2 | exon | 63884601 | 63884649 | 63884601 | ID=MS.gene07419.t1.exon2;Parent=MS.gene07419.t1 |
chr1.2 | CDS | 63884601 | 63884649 | 63884601 | ID=cds.MS.gene07419.t1;Parent=MS.gene07419.t1 |
chr1.2 | exon | 63882890 | 63882942 | 63882890 | ID=MS.gene07419.t1.exon3;Parent=MS.gene07419.t1 |
chr1.2 | CDS | 63882890 | 63882942 | 63882890 | ID=cds.MS.gene07419.t1;Parent=MS.gene07419.t1 |
chr1.2 | exon | 63882752 | 63882800 | 63882752 | ID=MS.gene07419.t1.exon4;Parent=MS.gene07419.t1 |
chr1.2 | CDS | 63882752 | 63882800 | 63882752 | ID=cds.MS.gene07419.t1;Parent=MS.gene07419.t1 |
Gene Sequence |
Protein sequence |