Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene074220.t1 | XP_003618748.1 | 97 | 168 | 5 | 0 | 1 | 168 | 1 | 168 | 1.30E-86 | 328.9 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene074220.t1 | G7KMS6 | 97.0 | 168 | 5 | 0 | 1 | 168 | 1 | 168 | 9.6e-87 | 328.9 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene05934 | MS.gene074220 | -0.80558 | 1.25E-49 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene074220.t1 | MTR_6g018430 | 97.024 | 168 | 5 | 0 | 1 | 168 | 1 | 168 | 2.73e-119 | 334 |
MS.gene074220.t1 | MTR_8g104210 | 49.669 | 151 | 65 | 4 | 28 | 168 | 14 | 163 | 4.77e-35 | 120 |
MS.gene074220.t1 | MTR_8g104210 | 49.669 | 151 | 65 | 4 | 28 | 168 | 23 | 172 | 4.79e-35 | 120 |
MS.gene074220.t1 | MTR_1g110760 | 46.203 | 158 | 68 | 5 | 27 | 168 | 4 | 160 | 1.99e-31 | 111 |
MS.gene074220.t1 | MTR_6g084470 | 42.697 | 178 | 81 | 7 | 1 | 168 | 1 | 167 | 4.48e-30 | 108 |
MS.gene074220.t1 | MTR_4g087400 | 44.318 | 176 | 55 | 5 | 1 | 168 | 1 | 141 | 2.50e-28 | 102 |
MS.gene074220.t1 | MTR_1g051170 | 43.243 | 185 | 57 | 6 | 1 | 168 | 1 | 154 | 3.06e-28 | 102 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene074220.t1 | AT5G16110 | 53.005 | 183 | 66 | 5 | 1 | 168 | 67 | 244 | 4.35e-50 | 161 |
MS.gene074220.t1 | AT3G02555 | 54.335 | 173 | 63 | 6 | 1 | 168 | 1 | 162 | 2.28e-44 | 144 |
MS.gene074220.t1 | AT3G02555 | 54.335 | 173 | 63 | 6 | 1 | 168 | 1 | 162 | 2.28e-44 | 144 |
MS.gene074220.t1 | AT1G68490 | 46.486 | 185 | 80 | 9 | 1 | 168 | 1 | 183 | 2.05e-40 | 135 |
MS.gene074220.t1 | AT1G13390 | 41.111 | 180 | 89 | 7 | 1 | 168 | 2 | 176 | 5.72e-32 | 113 |
MS.gene074220.t1 | AT1G13390 | 41.111 | 180 | 89 | 7 | 1 | 168 | 2 | 176 | 5.72e-32 | 113 |
Find 52 sgRNAs with CRISPR-Local
Find 105 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CCTTTGCGGGATGCAGAATT+TGG | 0.163389 | 6.2:+14570885 | None:intergenic |
CAGCAGGGACGCTTGAATTC+TGG | 0.294975 | 6.2:+14570784 | None:intergenic |
CCGGCTGCCGTTAGAGTAGA+AGG | 0.314222 | 6.2:-14570831 | MS.gene074220:CDS |
CCTAACACATCCACCTTTGC+GGG | 0.345952 | 6.2:+14570872 | None:intergenic |
TTGGTCCAGGATGCTCGATT+TGG | 0.359597 | 6.2:-14570948 | MS.gene074220:CDS |
TTTCCGTGTCTCCACCGGTC+AGG | 0.370731 | 6.2:-14570983 | MS.gene074220:CDS |
AAGGGTTCGATTGCCTCAAC+AGG | 0.378556 | 6.2:-14570812 | MS.gene074220:CDS |
GGATGTGTTAGGATGAGTTT+TGG | 0.398776 | 6.2:-14570861 | MS.gene074220:CDS |
GTCCTAAGCCACGACGAGTC+GGG | 0.412417 | 6.2:-14572205 | MS.gene074220:CDS |
TTCCGTGTCTCCACCGGTCA+GGG | 0.433361 | 6.2:-14570982 | MS.gene074220:CDS |
CCCGCAAAGGTGGATGTGTT+AGG | 0.445900 | 6.2:-14570872 | MS.gene074220:CDS |
ACCCCGACTCGTCGTGGCTT+AGG | 0.455948 | 6.2:+14572203 | None:intergenic |
GGCTGCCAATCCCTTGGTCC+AGG | 0.459812 | 6.2:-14570961 | MS.gene074220:CDS |
TCCTAACACATCCACCTTTG+CGG | 0.472579 | 6.2:+14570871 | None:intergenic |
TCCTTCAACAGGAGAGTCAC+GGG | 0.477973 | 6.2:-14571046 | MS.gene074220:intron |
AAGGGATTGGCAGCCCTGAC+CGG | 0.489912 | 6.2:+14570969 | None:intergenic |
AGCATCCTGGACCAAGGGAT+TGG | 0.490235 | 6.2:+14570956 | None:intergenic |
TTGGAGATGGCAAGCCTGAT+GGG | 0.496255 | 6.2:+14570904 | None:intergenic |
CGGGATGCAGAATTTGGAGA+TGG | 0.500725 | 6.2:+14570891 | None:intergenic |
CCTTCTACTCTAACGGCAGC+CGG | 0.501686 | 6.2:+14570831 | None:intergenic |
GGTCAGGGCTGCCAATCCCT+TGG | 0.502507 | 6.2:-14570967 | MS.gene074220:CDS |
CGTTTCCAAATCGAGCATCC+TGG | 0.506071 | 6.2:+14570943 | None:intergenic |
ATTATATCATCATCCCCATC+AGG | 0.516104 | 6.2:-14570918 | MS.gene074220:CDS |
CATCTCTTCACAAGCTGCAA+AGG | 0.522362 | 6.2:+14572271 | None:intergenic |
ATGGAATGTTAAGCGACAGC+AGG | 0.533461 | 6.2:+14570768 | None:intergenic |
TTCCTTCAACAGGAGAGTCA+CGG | 0.541824 | 6.2:-14571047 | MS.gene074220:intron |
TGAAATCTCAATTGTCGCAC+AGG | 0.546029 | 6.2:+14572167 | None:intergenic |
TTTGGAGATGGCAAGCCTGA+TGG | 0.546888 | 6.2:+14570903 | None:intergenic |
TCCTAAGCCACGACGAGTCG+GGG | 0.547817 | 6.2:-14572204 | MS.gene074220:CDS |
AGCCCTGACCGGTGGAGACA+CGG | 0.552443 | 6.2:+14570980 | None:intergenic |
TGTTCATAGTCAACAAGCTG+AGG | 0.552611 | 6.2:-14572053 | MS.gene074220:intron |
GTTCATAGTCAACAAGCTGA+GGG | 0.558392 | 6.2:-14572052 | MS.gene074220:intron |
ATCGAACCCTTCTACTCTAA+CGG | 0.568820 | 6.2:+14570824 | None:intergenic |
AATTCTGGCGATCCCTGTTG+AGG | 0.572292 | 6.2:+14570799 | None:intergenic |
AATTCTGCATCCCGCAAAGG+TGG | 0.573238 | 6.2:-14570882 | MS.gene074220:CDS |
AGGCTCCTTGTGATCAGTAA+TGG | 0.576308 | 6.2:+14572235 | None:intergenic |
TGTCCTAAGCCACGACGAGT+CGG | 0.584427 | 6.2:-14572206 | MS.gene074220:CDS |
GGATTGGCAGCCCTGACCGG+TGG | 0.587907 | 6.2:+14570972 | None:intergenic |
CCAAATTCTGCATCCCGCAA+AGG | 0.597293 | 6.2:-14570885 | MS.gene074220:CDS |
AAATCGAGCATCCTGGACCA+AGG | 0.614921 | 6.2:+14570950 | None:intergenic |
TGGAATGTTAAGCGACAGCA+GGG | 0.618138 | 6.2:+14570769 | None:intergenic |
GCAGCTTGTGAAGAGATGAG+AGG | 0.621316 | 6.2:-14572266 | MS.gene074220:CDS |
GACAAGACCCCGACTCGTCG+TGG | 0.623519 | 6.2:+14572197 | None:intergenic |
CGTTCTGCTGAAGACTGTAA+CGG | 0.626857 | 6.2:+14572294 | None:intergenic |
AATCGAGCATCCTGGACCAA+GGG | 0.628072 | 6.2:+14570951 | None:intergenic |
GGGTTCTGATTCAAAAGCTG+CGG | 0.642823 | 6.2:-14572032 | MS.gene074220:CDS |
AGTTACCATTACTGATCACA+AGG | 0.652918 | 6.2:-14572240 | MS.gene074220:CDS |
TGGAGATGGCAAGCCTGATG+GGG | 0.657463 | 6.2:+14570905 | None:intergenic |
CGGCTGCCGTTAGAGTAGAA+GGG | 0.675818 | 6.2:-14570830 | MS.gene074220:CDS |
AGGGTTCGATTGCCTCAACA+GGG | 0.682124 | 6.2:-14570811 | MS.gene074220:CDS |
CCTTCAACAGGAGAGTCACG+GGG | 0.682882 | 6.2:-14571045 | MS.gene074220:intron |
CGTGGCTTAGGACAAATGAG+AGG | 0.704524 | 6.2:+14572215 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTTATTTTGATTTTGTTAAA+TGG | - | chr6.2:14571589-14571608 | MS.gene074220:intron | 10.0% |
!! | CATTAAAATACTAAAATGAT+AGG | + | chr6.2:14571668-14571687 | None:intergenic | 15.0% |
!!! | CTTTAATTTATACTGTTTTT+GGG | - | chr6.2:14571515-14571534 | MS.gene074220:intron | 15.0% |
!!! | TATTTTAATGTTCTGATTTT+TGG | - | chr6.2:14571678-14571697 | MS.gene074220:intron | 15.0% |
!!! | TCTTTAATTTATACTGTTTT+TGG | - | chr6.2:14571514-14571533 | MS.gene074220:intron | 15.0% |
!! | AAACAAACATAACAAAATCA+TGG | + | chr6.2:14571805-14571824 | None:intergenic | 20.0% |
!! | AGTATAAATTAAAGATAACC+AGG | + | chr6.2:14571509-14571528 | None:intergenic | 20.0% |
!!! | AATTAATCGAAGTTTGAAAT+CGG | + | chr6.2:14571996-14572015 | None:intergenic | 20.0% |
! | ATTGACATTGAATATTGTTC+TGG | - | chr6.2:14570958-14570977 | MS.gene074220:CDS | 25.0% |
! | CCTATTTCATAAAGATAACT+GGG | + | chr6.2:14571389-14571408 | None:intergenic | 25.0% |
! | TCCTATTTCATAAAGATAAC+TGG | + | chr6.2:14571390-14571409 | None:intergenic | 25.0% |
!! | ATGATTAGTAATTTTCCTGT+AGG | - | chr6.2:14571859-14571878 | MS.gene074220:intron | 25.0% |
AAATGTCTGTGTGATAATCT+TGG | - | chr6.2:14571153-14571172 | MS.gene074220:intron | 30.0% | |
AATTTGTCGAGCTCATATTT+AGG | - | chr6.2:14571115-14571134 | MS.gene074220:intron | 30.0% | |
CAAAAATCACATTTACCTAC+AGG | + | chr6.2:14571877-14571896 | None:intergenic | 30.0% | |
CCCAGTTATCTTTATGAAAT+AGG | - | chr6.2:14571386-14571405 | MS.gene074220:intron | 30.0% | |
TAAAGATAACCAGGCAAAAA+AGG | + | chr6.2:14571500-14571519 | None:intergenic | 30.0% | |
TGTTCTCTTAGAAAAAGAGT+TGG | - | chr6.2:14571614-14571633 | MS.gene074220:intron | 30.0% | |
! | CTGTAGGTAAATGTGATTTT+TGG | - | chr6.2:14571875-14571894 | MS.gene074220:intron | 30.0% |
! | GGATTCGTCTTATTATTAGT+CGG | - | chr6.2:14571635-14571654 | MS.gene074220:intron | 30.0% |
!! | CTTATTAACGAAGGCATTAA+TGG | + | chr6.2:14571541-14571560 | None:intergenic | 30.0% |
AAATAGGATTGCGAGATTCT+TGG | - | chr6.2:14571402-14571421 | MS.gene074220:intron | 35.0% | |
AGTTACCATTACTGATCACA+AGG | - | chr6.2:14570835-14570854 | MS.gene074220:CDS | 35.0% | |
ATTATATCATCATCCCCATC+AGG | - | chr6.2:14572157-14572176 | MS.gene074220:intron | 35.0% | |
CTAATCATATTCAACAAGCG+TGG | + | chr6.2:14571847-14571866 | None:intergenic | 35.0% | |
CTTCTAGTCAAACTGAGATT+TGG | + | chr6.2:14571938-14571957 | None:intergenic | 35.0% | |
TAAAGATAACTGGGCAAATC+AGG | + | chr6.2:14571380-14571399 | None:intergenic | 35.0% | |
TAAGTTGTGTTGTCAATTGC+AGG | + | chr6.2:14571724-14571743 | None:intergenic | 35.0% | |
TCAAATTACACTGCACTACT+AGG | + | chr6.2:14571182-14571201 | None:intergenic | 35.0% | |
! | AATAAGACACACGGTTTGTT+TGG | - | chr6.2:14571555-14571574 | MS.gene074220:intron | 35.0% |
! | TTGCATTCTTTTCCTTCAAC+AGG | - | chr6.2:14572018-14572037 | MS.gene074220:CDS | 35.0% |
!! | GCTTGACATGATTTTTGAGA+AGG | - | chr6.2:14571073-14571092 | MS.gene074220:intron | 35.0% |
!! | TATTGTTCTGGATGCCTTTT+AGG | - | chr6.2:14570970-14570989 | MS.gene074220:CDS | 35.0% |
!!! | CAAGTGTATGTTTTGATGCA+CGG | - | chr6.2:14571746-14571765 | MS.gene074220:intron | 35.0% |
!!! | GATGAGTTTTGGACTTAAAC+CGG | - | chr6.2:14572225-14572244 | MS.gene074220:CDS | 35.0% |
!!! | TATGTTTTGATGCACGGTTA+AGG | - | chr6.2:14571752-14571771 | MS.gene074220:intron | 35.0% |
ATCGAACCCTTCTACTCTAA+CGG | + | chr6.2:14572254-14572273 | None:intergenic | 40.0% | |
GCCTTCGTTAATAAGACACA+CGG | - | chr6.2:14571546-14571565 | MS.gene074220:intron | 40.0% | |
GCTGCATATGTTGTCAATCA+TGG | + | chr6.2:14571256-14571275 | None:intergenic | 40.0% | |
GGAAAAATATGGAGGAGATG+AGG | + | chr6.2:14572077-14572096 | None:intergenic | 40.0% | |
GTTCATAGTCAACAAGCTGA+GGG | - | chr6.2:14571023-14571042 | MS.gene074220:CDS | 40.0% | |
TCGAGCTCATATTTAGGCTT+AGG | - | chr6.2:14571121-14571140 | MS.gene074220:intron | 40.0% | |
TGAAATCTCAATTGTCGCAC+AGG | + | chr6.2:14570911-14570930 | None:intergenic | 40.0% | |
TGTTCATAGTCAACAAGCTG+AGG | - | chr6.2:14571022-14571041 | MS.gene074220:CDS | 40.0% | |
TTACAGATCAGCCACCTAAA+AGG | + | chr6.2:14570987-14571006 | None:intergenic | 40.0% | |
! | ACCGTGTGTCTTATTAACGA+AGG | + | chr6.2:14571550-14571569 | None:intergenic | 40.0% |
! | ATATTTTTCCGTGTCTCCAC+CGG | - | chr6.2:14572087-14572106 | MS.gene074220:intron | 40.0% |
! | CTCATTTACTCCGTGCATTT+TGG | - | chr6.2:14571348-14571367 | MS.gene074220:intron | 40.0% |
! | GGATGTGTTAGGATGAGTTT+TGG | - | chr6.2:14572214-14572233 | MS.gene074220:CDS | 40.0% |
AGGCTCCTTGTGATCAGTAA+TGG | + | chr6.2:14570843-14570862 | None:intergenic | 45.0% | |
CAGGTATTCGCCAAAATGCA+CGG | + | chr6.2:14571361-14571380 | None:intergenic | 45.0% | |
CATCTCTTCACAAGCTGCAA+AGG | + | chr6.2:14570807-14570826 | None:intergenic | 45.0% | |
CGTTCTGCTGAAGACTGTAA+CGG | + | chr6.2:14570784-14570803 | None:intergenic | 45.0% | |
GAACACGATTGCGAGAATCT+TGG | - | chr6.2:14571289-14571308 | MS.gene074220:intron | 45.0% | |
GGAGACACGGAAAAATATGG+AGG | + | chr6.2:14572085-14572104 | None:intergenic | 45.0% | |
GGTGGAGACACGGAAAAATA+TGG | + | chr6.2:14572088-14572107 | None:intergenic | 45.0% | |
TCCTAACACATCCACCTTTG+CGG | + | chr6.2:14572207-14572226 | None:intergenic | 45.0% | |
TTCCTTCAACAGGAGAGTCA+CGG | - | chr6.2:14572028-14572047 | MS.gene074220:CDS | 45.0% | |
TTGCGAGAATCTTGGATGAG+TGG | - | chr6.2:14571297-14571316 | MS.gene074220:intron | 45.0% | |
TTGCGAGATTCTTGGATGAG+TGG | - | chr6.2:14571410-14571429 | MS.gene074220:intron | 45.0% | |
! | GGGTTCTGATTCAAAAGCTG+CGG | - | chr6.2:14571043-14571062 | MS.gene074220:intron | 45.0% |
!! | TGTTCTGGATGCCTTTTAGG+TGG | - | chr6.2:14570973-14570992 | MS.gene074220:CDS | 45.0% |
!!! | TGGGGAATACCTTTTTTGCC+TGG | - | chr6.2:14571488-14571507 | MS.gene074220:intron | 45.0% |
AAATCGAGCATCCTGGACCA+AGG | + | chr6.2:14572128-14572147 | None:intergenic | 50.0% | |
AAGGGTTCGATTGCCTCAAC+AGG | - | chr6.2:14572263-14572282 | MS.gene074220:CDS | 50.0% | |
AATCGAGCATCCTGGACCAA+GGG | + | chr6.2:14572127-14572146 | None:intergenic | 50.0% | |
AATTCTGCATCCCGCAAAGG+TGG | - | chr6.2:14572193-14572212 | MS.gene074220:CDS | 50.0% | |
AATTCTGGCGATCCCTGTTG+AGG | + | chr6.2:14572279-14572298 | None:intergenic | 50.0% | |
AGGGTTCGATTGCCTCAACA+GGG | - | chr6.2:14572264-14572283 | MS.gene074220:CDS | 50.0% | |
ATGCACTTTCCGCGCATTCT+GGG | - | chr6.2:14571469-14571488 | MS.gene074220:intron | 50.0% | |
CCAAATTCTGCATCCCGCAA+AGG | - | chr6.2:14572190-14572209 | MS.gene074220:CDS | 50.0% | |
CCTAACACATCCACCTTTGC+GGG | + | chr6.2:14572206-14572225 | None:intergenic | 50.0% | |
CCTTTGCGGGATGCAGAATT+TGG | + | chr6.2:14572193-14572212 | None:intergenic | 50.0% | |
CGGGATGCAGAATTTGGAGA+TGG | + | chr6.2:14572187-14572206 | None:intergenic | 50.0% | |
CGTGGCTTAGGACAAATGAG+AGG | + | chr6.2:14570863-14570882 | None:intergenic | 50.0% | |
CGTTTCCAAATCGAGCATCC+TGG | + | chr6.2:14572135-14572154 | None:intergenic | 50.0% | |
GCAGCTTGTGAAGAGATGAG+AGG | - | chr6.2:14570809-14570828 | MS.gene074220:CDS | 50.0% | |
TATGCACTTTCCGCGCATTC+TGG | - | chr6.2:14571468-14571487 | MS.gene074220:intron | 50.0% | |
TCCTTCAACAGGAGAGTCAC+GGG | - | chr6.2:14572029-14572048 | MS.gene074220:CDS | 50.0% | |
TTGGAGATGGCAAGCCTGAT+GGG | + | chr6.2:14572174-14572193 | None:intergenic | 50.0% | |
TTGGTCCAGGATGCTCGATT+TGG | - | chr6.2:14572127-14572146 | MS.gene074220:intron | 50.0% | |
TTTGGAGATGGCAAGCCTGA+TGG | + | chr6.2:14572175-14572194 | None:intergenic | 50.0% | |
! | AAGGTATTCCCCAGAATGCG+CGG | + | chr6.2:14571481-14571500 | None:intergenic | 50.0% |
AGCATCCTGGACCAAGGGAT+TGG | + | chr6.2:14572122-14572141 | None:intergenic | 55.0% | |
CAGCAGGGACGCTTGAATTC+TGG | + | chr6.2:14572294-14572313 | None:intergenic | 55.0% | |
CCCGCAAAGGTGGATGTGTT+AGG | - | chr6.2:14572203-14572222 | MS.gene074220:CDS | 55.0% | |
CCTTCAACAGGAGAGTCACG+GGG | - | chr6.2:14572030-14572049 | MS.gene074220:CDS | 55.0% | |
CCTTCTACTCTAACGGCAGC+CGG | + | chr6.2:14572247-14572266 | None:intergenic | 55.0% | |
CGGCTGCCGTTAGAGTAGAA+GGG | - | chr6.2:14572245-14572264 | MS.gene074220:CDS | 55.0% | |
TGCACTTTCCGCGCATTCTG+GGG | - | chr6.2:14571470-14571489 | MS.gene074220:intron | 55.0% | |
TGGAGATGGCAAGCCTGATG+GGG | + | chr6.2:14572173-14572192 | None:intergenic | 55.0% | |
TGTCCTAAGCCACGACGAGT+CGG | - | chr6.2:14570869-14570888 | MS.gene074220:CDS | 55.0% | |
CCCCGTGACTCTCCTGTTGA+AGG | + | chr6.2:14572033-14572052 | None:intergenic | 60.0% | |
CCGGCTGCCGTTAGAGTAGA+AGG | - | chr6.2:14572244-14572263 | MS.gene074220:CDS | 60.0% | |
GTCCTAAGCCACGACGAGTC+GGG | - | chr6.2:14570870-14570889 | MS.gene074220:CDS | 60.0% | |
TCCTAAGCCACGACGAGTCG+GGG | - | chr6.2:14570871-14570890 | MS.gene074220:CDS | 60.0% | |
TTCCGTGTCTCCACCGGTCA+GGG | - | chr6.2:14572093-14572112 | MS.gene074220:intron | 60.0% | |
TTTCCGTGTCTCCACCGGTC+AGG | - | chr6.2:14572092-14572111 | MS.gene074220:intron | 60.0% | |
! | AAGGGATTGGCAGCCCTGAC+CGG | + | chr6.2:14572109-14572128 | None:intergenic | 60.0% |
AGCCCTGACCGGTGGAGACA+CGG | + | chr6.2:14572098-14572117 | None:intergenic | 65.0% | |
GGCTGCCAATCCCTTGGTCC+AGG | - | chr6.2:14572114-14572133 | MS.gene074220:intron | 65.0% | |
GGTCAGGGCTGCCAATCCCT+TGG | - | chr6.2:14572108-14572127 | MS.gene074220:intron | 65.0% | |
! | ACCCCGACTCGTCGTGGCTT+AGG | + | chr6.2:14570875-14570894 | None:intergenic | 65.0% |
! | GACAAGACCCCGACTCGTCG+TGG | + | chr6.2:14570881-14570900 | None:intergenic | 65.0% |
! | GGATTGGCAGCCCTGACCGG+TGG | + | chr6.2:14572106-14572125 | None:intergenic | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr6.2 | gene | 14570776 | 14572321 | 14570776 | ID=MS.gene074220 |
chr6.2 | mRNA | 14570776 | 14572321 | 14570776 | ID=MS.gene074220.t1;Parent=MS.gene074220 |
chr6.2 | exon | 14572161 | 14572321 | 14572161 | ID=MS.gene074220.t1.exon1;Parent=MS.gene074220.t1 |
chr6.2 | CDS | 14572161 | 14572321 | 14572161 | ID=cds.MS.gene074220.t1;Parent=MS.gene074220.t1 |
chr6.2 | exon | 14572003 | 14572066 | 14572003 | ID=MS.gene074220.t1.exon2;Parent=MS.gene074220.t1 |
chr6.2 | CDS | 14572003 | 14572066 | 14572003 | ID=cds.MS.gene074220.t1;Parent=MS.gene074220.t1 |
chr6.2 | exon | 14570776 | 14571057 | 14570776 | ID=MS.gene074220.t1.exon3;Parent=MS.gene074220.t1 |
chr6.2 | CDS | 14570776 | 14571057 | 14570776 | ID=cds.MS.gene074220.t1;Parent=MS.gene074220.t1 |
Gene Sequence |
Protein sequence |