AlfalfaGEDB | MS.gene05934

M. sativa cultivar XinJiangDaYe / MS.gene05934

KEGG: -
GO: -
PFAM: PF03372.26

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene05934.t1	XP_003630828.1	95.2	418	16	2	1	418	1	414	2.70E-221	777.7

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene05934.t1	Q9LS39	57.5	362	146	4	39	396	87	444	2.5e-119	430.3

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene05934.t1	G7L904	95.2	418	16	2	1	418	1	414	1.9e-221	777.7

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049137	MS.gene05934	0.912817	1.26E-83	-1.69E-46
MS.gene049171	MS.gene05934	0.862819	3.87E-64	-1.69E-46
MS.gene049173	MS.gene05934	0.824702	6.99E-54	-1.69E-46
MS.gene049217	MS.gene05934	0.906444	1.47E-80	-1.69E-46
MS.gene049222	MS.gene05934	0.908765	1.19E-81	-1.69E-46
MS.gene049232	MS.gene05934	0.817955	2.52E-52	-1.69E-46
MS.gene049285	MS.gene05934	0.88182	1.75E-70	-1.69E-46
MS.gene049320	MS.gene05934	0.864206	1.44E-64	-1.69E-46
MS.gene049369	MS.gene05934	0.808524	2.97E-50	-1.69E-46
MS.gene049427	MS.gene05934	0.872082	4.18E-67	-1.69E-46

Showing 1 to 10 of 1,852 entries

Previous1 2 3 4 5…186Next

PPI:

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene05934.t1	MTR_8g103870	94.988	419	15	3	1	418	1	414	0.0	812
MS.gene05934.t1	MTR_6g084560	45.405	370	183	3	44	397	44	410	2.50e-108	326
MS.gene05934.t1	MTR_6g084560	45.092	326	160	3	44	353	44	366	2.04e-92	283
MS.gene05934.t1	MTR_6g084560	45.041	242	117	1	44	269	44	285	2.21e-71	227
MS.gene05934.t1	MTR_1g011720	48.918	231	108	2	44	264	159	389	2.81e-65	223
MS.gene05934.t1	MTR_1g011720	48.918	231	108	2	44	264	159	389	6.70e-65	223
MS.gene05934.t1	MTR_1g011720	50.962	104	51	0	293	396	722	825	6.12e-25	108
MS.gene05934.t1	MTR_7g107240	29.765	383	198	13	51	394	209	559	1.60e-29	120
MS.gene05934.t1	MTR_1g054605	29.657	408	221	15	12	394	98	464	2.60e-29	119
MS.gene05934.t1	MTR_1g054605	28.271	428	230	14	12	394	98	493	8.22e-29	118

Showing 1 to 10 of 15 entries

Previous1 2Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene05934.t1	AT3G18500	57.735	362	142	4	39	396	87	441	4.13e-148	428
MS.gene05934.t1	AT3G18500	57.459	362	146	4	39	396	87	444	2.22e-147	426
MS.gene05934.t1	AT3G18500	57.459	362	147	4	39	396	87	445	2.39e-147	426
MS.gene05934.t1	AT3G18500	53.315	362	139	5	39	396	87	422	1.44e-130	383
MS.gene05934.t1	AT1G73875	45.479	376	192	2	34	396	74	449	3.26e-119	355
MS.gene05934.t1	AT1G73875	43.564	303	158	2	34	323	74	376	1.73e-88	274
MS.gene05934.t1	AT1G73875	48.062	258	121	2	152	396	14	271	1.73e-81	252
MS.gene05934.t1	AT5G11350	44.493	227	110	2	54	264	17	243	1.79e-60	206
MS.gene05934.t1	AT5G11350	38.728	173	97	2	225	396	421	585	1.00e-25	110
MS.gene05934.t1	AT5G11350	43.038	237	119	2	44	264	167	403	6.59e-59	204

Showing 1 to 10 of 27 entries

Previous1 2 3Next

Find 94 sgRNAs with CRISPR-Local

Find 229 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATCACCAGCTAGGATTAC+AGG	0.344241	4.4:-2819807	None:intergenic
AACAGGGGAGAAGTTAAATT+AGG	0.439956	4.4:+2819477	MS.gene05934:CDS
AAGCTGCTCTCGTGGCCGTG+GGG	0.685167	4.4:-2817464	None:intergenic
AATCACCAGCTAGGATTACA+GGG	0.564155	4.4:-2819806	None:intergenic
AATGCCCCTGTAATCCTAGC+TGG	0.549245	4.4:+2819801	MS.gene05934:CDS
AATTTAACTTCTCCCCTGTT+TGG	0.275296	4.4:-2819474	None:intergenic
AATTTGTGAAGCTGCTCTCG+TGG	0.615555	4.4:-2817472	None:intergenic
ACAAATTCCAATTCTTCTCG+CGG	0.576515	4.4:+2817516	MS.gene05934:CDS
ACAGTCCCTCTCAGAGAAAT+GGG	0.404948	4.4:+2819776	MS.gene05934:CDS
ACATGATACAGGTACTCTGA+AGG	0.655025	4.4:+2821256	MS.gene05934:intron

Showing 1 to 10 of 94 entries

Previous1 2 3 4 5…10Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAAAAACTGCATGAAAATGC+CGG	-	chr4.4:2820703-2820722	None:intergenic	30.0%
AAGCAAATTATATGAGCATC+CGG	-	chr4.4:2818098-2818117	None:intergenic	30.0%
ACTAACCAAAGTGAATAAAC+TGG	-	chr4.4:2818666-2818685	None:intergenic	30.0%
ACTTGTAAGCAGATAATATC+AGG	-	chr4.4:2817735-2817754	None:intergenic	30.0%
AGCCTAATGAATTGTGTAAA+TGG	+	chr4.4:2818529-2818548	MS.gene05934:intron	30.0%
ATAAAGCAAGAGATGACAAA+AGG	-	chr4.4:2819261-2819280	None:intergenic	30.0%
ATAGACCATGAGAAAGAATA+TGG	-	chr4.4:2821011-2821030	None:intergenic	30.0%
ATTATTCTCACTCATTGATC+AGG	+	chr4.4:2817819-2817838	MS.gene05934:intron	30.0%
CAGTTAAACAAAATCAACGT+CGG	+	chr4.4:2818920-2818939	MS.gene05934:intron	30.0%
CTCCATTTACACAATTCATT+AGG	-	chr4.4:2818534-2818553	None:intergenic	30.0%

Showing 1 to 10 of 229 entries

Previous1 2 3 4 5…23Next

Chromosome	Type	Strat	End	Strand	Name
chr4.4	gene	2817417	2821541	2817417	ID=MS.gene05934
chr4.4	mRNA	2817417	2821541	2817417	ID=MS.gene05934.t1;Parent=MS.gene05934
chr4.4	exon	2817417	2817752	2817417	ID=MS.gene05934.t1.exon1;Parent=MS.gene05934.t1
chr4.4	CDS	2817417	2817752	2817417	ID=cds.MS.gene05934.t1;Parent=MS.gene05934.t1
chr4.4	exon	2817841	2817906	2817841	ID=MS.gene05934.t1.exon2;Parent=MS.gene05934.t1
chr4.4	CDS	2817841	2817906	2817841	ID=cds.MS.gene05934.t1;Parent=MS.gene05934.t1
chr4.4	exon	2818560	2818612	2818560	ID=MS.gene05934.t1.exon3;Parent=MS.gene05934.t1
chr4.4	CDS	2818560	2818612	2818560	ID=cds.MS.gene05934.t1;Parent=MS.gene05934.t1
chr4.4	exon	2818708	2818789	2818708	ID=MS.gene05934.t1.exon4;Parent=MS.gene05934.t1
chr4.4	CDS	2818708	2818789	2818708	ID=cds.MS.gene05934.t1;Parent=MS.gene05934.t1
chr4.4	exon	2819417	2819503	2819417	ID=MS.gene05934.t1.exon5;Parent=MS.gene05934.t1
chr4.4	CDS	2819417	2819503	2819417	ID=cds.MS.gene05934.t1;Parent=MS.gene05934.t1
chr4.4	exon	2819753	2819845	2819753	ID=MS.gene05934.t1.exon6;Parent=MS.gene05934.t1
chr4.4	CDS	2819753	2819845	2819753	ID=cds.MS.gene05934.t1;Parent=MS.gene05934.t1
chr4.4	exon	2819944	2819976	2819944	ID=MS.gene05934.t1.exon7;Parent=MS.gene05934.t1
chr4.4	CDS	2819944	2819976	2819944	ID=cds.MS.gene05934.t1;Parent=MS.gene05934.t1
chr4.4	exon	2820136	2820248	2820136	ID=MS.gene05934.t1.exon8;Parent=MS.gene05934.t1
chr4.4	CDS	2820136	2820248	2820136	ID=cds.MS.gene05934.t1;Parent=MS.gene05934.t1
chr4.4	exon	2820850	2820958	2820850	ID=MS.gene05934.t1.exon9;Parent=MS.gene05934.t1
chr4.4	CDS	2820850	2820958	2820850	ID=cds.MS.gene05934.t1;Parent=MS.gene05934.t1
chr4.4	exon	2821065	2821150	2821065	ID=MS.gene05934.t1.exon10;Parent=MS.gene05934.t1
chr4.4	CDS	2821065	2821150	2821065	ID=cds.MS.gene05934.t1;Parent=MS.gene05934.t1
chr4.4	exon	2821267	2821351	2821267	ID=MS.gene05934.t1.exon11;Parent=MS.gene05934.t1
chr4.4	CDS	2821267	2821351	2821267	ID=cds.MS.gene05934.t1;Parent=MS.gene05934.t1
chr4.4	exon	2821428	2821541	2821428	ID=MS.gene05934.t1.exon12;Parent=MS.gene05934.t1
chr4.4	CDS	2821428	2821541	2821428	ID=cds.MS.gene05934.t1;Parent=MS.gene05934.t1

Gene Sequence

>MS.gene05934

ATGGCCTCTTCAACTTGGCTCATCTCCTCTTTCTTCAAATTCAGTATCCCCACGGCCACGAGAGCAGCTTCACAAATTCACTGTGTCTGTCAGTGTAATACAAATTCCAATTCTTCTCGCGGAATCCAACGCCGTTGGGTTGAAGCATTCGATCAATCCCTCACATCTCCGGAGAGATTCACAGTAGCTTCATACAATATACTTGCTGATAGAAATGCTTCTCAACACTCTGATTTATACGTTAACGTTCCTTCTCGTTACATCAATTGGAATCGTCGTCAAAAGATTCTTTCTGATGAACTTTTTCAATGGAACCCTGATATTATCTGCTTACAAGTAAGTAACAACCAACTTTTCACTATGCTAATAAGCACTTAATTAAGCTGTTTGACTCAAAAATGTATTATTCTCACTCATTGATCAGGAGGTGGACAAGTACGTTGAACTCTCCAATATTTTGGTAAAGGCTGGATATGCAGGTTCTTATAAGGTACTAAACTATAAGCTGTTTGAATAAGCTATCTTGGAGAACTTATGAAAATAAGCTAAAAACAGCATATCAACGATGTCCTCGTAGGCTGTTTTCATAAGTTCTCCCAAATAGTCTCACAAAACTTATGCAAGTAGATAAGCTCTAATAAGTCAATTCAAACAGGCCCTATGTGCTATTTATTGCTTCCGGATGCTCATATAATTTGCTTGTTCCATTTTCATAATATGTTATCTAAACTTATCTAAATTTGAGTTTCAATATCAATGTTGTATGTTTTTAAATTTAAAAATTTGAAGGAAAATAAGTGTTATTAAGCATAAAATGGTAAAGAAAAAGATTTGACCAAAATTGATAGTTAGTTCTCTTTATATTATGGTGTAGAGACATAAAATAAGACTTCAAATTAGGGTTTGAGTTTCTATTTTTTACTTTGGTTTTGTAATGCCTGGTATATTCTCAATCAATTTTCAGTTCATTAATAAATTAATGATAAAACGTAGTTGATTTTATCTGCAATGACAATAAGACATACTGATTTATCTCTGTTCAAATGTGAAAAAAATTTAGCATTGGTAGCAGTGCACCTTGATATGTAGGTTTATAAGTTCTAACTAATGGGAGCCTAATGAATTGTGTAAATGGAGCTGCAGAGACGCACTGGAGATACATCTGACGGTTGTGCAATGTTTTGGAAAACTGATAAGTAATCTACTAGTAGCTCACTTTGCTTGTTATGTTAGATAAAAATTGATACCAGTTTATTCACTTTGGTTAGTCTTTTTCTTATTTGTCTGTTAGGTTCCGATTGTTAGATGGAGAAAGCATTCAATATAAGAACATTGGCCTTCGTGATAATGTTGCTCAACTTCTAGTTTTTGAGGTACGAGTCCCTTGATGCCAATGACGCGAATGCTTATTCGTTTTGGCGTTTCAAAACTTTGCTTCTGTTCTTTTTTTGAACAATATTTTTTTTTCTATTTAAAAAAATGACTTGAGCACTGCATCAGGCACAGTTAAACAAAATCAACGTCGGAAAACTCTTTAATCAGAACACTAAACCATTAGAAGAAAATATTAGAGATTGTTTTCTCCCATGGAACCATAAAGCAAGCATATGCAAGGTTTCCATCCCAGTAGGTGTTTGCTACCTATGGGGTTTGTACCATTGCTGATTTATGACTGCATTGCATGCATGACTTTCCAAAAGTATAAAATTTGCATGTAAAGGAGAATATCTTATATAGTTGTGACATTGATTATTAGCATTGTTGTAGGCTTATTTATCAAACATAAAAATTTGTATAACAGTGAGTGCTGTGGCACTTGAATGCTGCCTGAATTCCTTGCTCCTTTTGTCATCTCTTGCTTTATGTAGCATGATCTCTTATATTAGCTCGAACTTAAGCAGTAGCAATCCTTTATTGTCTAGCTTTATTAATGTAAATATTGTCCTGCCGTACATCTGTTGGTCATCCTATGCATCTTTAACTCCATCCTGTACAGGCAGATGTCTGGATCTGACTCAAGAAGACTGTTGGTTGGTAATATCCACGTACTCTATAACCCAAACAGGGGAGAAGTTAAATTAGGTCAAGTAAGTGTTTTATTCTCTCTTTGGCCTATAAACAAAGGTTTTTACTCCCCCCTCTGCATAAAGGTCCGGCTGATCAGTTGGGGAAAATAACTACTAATGCCTAATCCTAAAATGCTTTTGTCATCTTGTAAATACTATTCAGTATTTACATTACCTTAAGTTTGAAAATCCTATTTATATCTTACTATTTACATTAGCTTAATGCCTACACCTAATCCTTAAATTATCTTGAAATATTAAATGTTGCAGATTCGTTTTCTCTCATCAAAAGCACAGTCCCTCTCAGAGAAATGGGGTAATGCCCCTGTAATCCTAGCTGGTGATTTTAACAGTACTCCTGAGGTGCATATTTCAGAAAATAGATAGGAGTTATTCATTTAGTTACTTTGTGTTGTTCATTTTTGACATGTTGATTTTTATTTGTACTCGTTCTTCAACAGAGTGGAATATACAAGTTCTTGTCAACGTCTGAGGTGACTTTCTTTGAATTTTTATATTACATGCTCATAATCTTAGTTTTGCAAATTCATTTTATACCAGACACAGCAATAAGATTGATTATGCCATGAGTCGTAGCAAGTATTTTATCTTTAAGATGCTTAATTGAAAATATATGTGGTTTTCATTTGCAGCTTAATATCAAGCTATATGACAGAAAGCAGTTATCTGGACAGAAACGCTGTCGTCCTGCTCAAGTTTTAGGCGAGAAAAAAGAAACAGTTAGTCCATTTAGTTCACTGGATGGGTATTTTTCCTTTTTTCTTTCTATTAATTCTATATCGTAAGCTACCACTTAGGATTGCATGAGCAGTTAATATGGTAAAGAATTACTATTTGATATTTAAATTATAACAAACTTTGCTTGACATTGTATGACTGTAAAATCTTCAGCTTGATTAAAAAAAAAAAAATTGACCAAAGTTTGATTAAATATTTGAAATCAGGAAGTTTTACATTTTCACAATTTATAACTAAACTCCACTCTTGAATGTGTGTGTTCTAAATCAGTGTGCAACAAACTGTATTCATCTTTTACGATTTCTGTTCACTTCAACTATTTCCTAAATAATAATATATTTCTCCTGAAGTTTTCTAAAAGCAAAAGTTTCTTGACCTGCTTTTCGCTCATTGGATTTGCTACAATTTTCACATGAATGCCCTCTCGTGAATATAGGTTAGGCATTTTGTATATGATACCGGCATTTTCATGCAGTTTTTTGTATGATATAAATTGGAACATTTTATGACATTTATACATTAACTGAAGAAGGCATGTTTCTTACAAGTGTTTGTGCTATTCAGTTCTTTAATATCACATTATGATGCTCTGAAGCTACTATTTCCAGATTGTTAGACTGCTGGACAGATGAAGAGGTAAAAACTGCAACTGGTGATTCTGAGTGTCACTTGGCTGTTCATCCATTAAAGCTGAATAGTTCGTATGCCACAGTCAATGTACCTATTCATTCTTTTGTAGCCTATTATTTATTATTTATACTAATTTCCATATTCTTTCTCATGGTCTATGTCTATAGAATATTAAAATGATAAACCTATTCAGGGATCTGCTAGTACACGGGGATTCAATGATGAACCCCTGGCAACTTCCTATCACTCAAAGTTTCTTGGTACTGTAGATTATTTATGGTAATAAATTCCTTCCTAAGTGCTGATAATGTTCGGGTTATGAAAAATATGATGTTTATAATTATAGCCTTAATAATGACAATCACACAAAAATAGATTGATTGCACATGATACAGGTACTCTGAAGGTATTGTACCAACTAGAGTTCTTGATACCGTTTCAATTAGTGATCTCCTGAGGGAAGGTGGTCTCCCATGCAAGGTATTACTGCTTCAATTTTTTTCTTCTAATTGTAATATTTTCTCTCCATCTAACTAGTTTTTTTCTTGATCAATAGAAAGTGGGAAGCGACCATTTGGCGTTGCTGTCAGAATTTTCCTTCTCGGTGACCCATAATAAATCTACAGACATAGCTGCAGCAGCGGCATCACCTAGAGTAGATGTTGAATAG

Protein sequence

>MS.gene05934.t1

MASSTWLISSFFKFSIPTATRAASQIHCVCQCNTNSNSSRGIQRRWVEAFDQSLTSPERFTVASYNILADRNASQHSDLYVNVPSRYINWNRRQKILSDELFQWNPDIICLQEVDKYVELSNILVKAGYAGSYKRRTGDTSDGCAMFWKTDKFRLLDGESIQYKNIGLRDNVAQLLVFEMSGSDSRRLLVGNIHVLYNPNRGEVKLGQIRFLSSKAQSLSEKWGNAPVILAGDFNSTPESGIYKFLSTSELNIKLYDRKQLSGQKRCRPAQVLGEKKETVSPFSSLDGLLDCWTDEEVKTATGDSECHLAVHPLKLNSSYATVNGSASTRGFNDEPLATSYHSKFLGTVDYLWYSEGIVPTRVLDTVSISDLLREGGLPCKKVGSDHLALLSEFSFSVTHNKSTDIAAAAASPRVDVE