Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene074361.t1 | XP_003601278.1 | 98.2 | 767 | 14 | 0 | 1 | 767 | 1 | 767 | 0.00E+00 | 1398.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene074361.t1 | F4HSX9 | 56.7 | 705 | 227 | 6 | 54 | 756 | 14 | 642 | 1.4e-211 | 737.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene074361.t1 | G7J5H3 | 98.2 | 767 | 14 | 0 | 1 | 767 | 29 | 795 | 0.0e+00 | 1398.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052562 | MS.gene074361 | 0.814448 | 1.53E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene02122 | MS.gene074361 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene074361.t1 | MTR_3g077950 | 98.175 | 767 | 14 | 0 | 1 | 767 | 1 | 767 | 0.0 | 1547 |
| MS.gene074361.t1 | MTR_3g077950 | 98.175 | 767 | 14 | 0 | 1 | 767 | 29 | 795 | 0.0 | 1545 |
| MS.gene074361.t1 | MTR_4g106900 | 71.773 | 581 | 162 | 2 | 176 | 754 | 88 | 668 | 0.0 | 854 |
| MS.gene074361.t1 | MTR_6g007110 | 64.875 | 558 | 181 | 5 | 213 | 766 | 152 | 698 | 0.0 | 736 |
| MS.gene074361.t1 | MTR_6g007110 | 51.724 | 116 | 45 | 3 | 17 | 122 | 8 | 122 | 4.37e-20 | 95.9 |
| MS.gene074361.t1 | MTR_8g099745 | 62.795 | 508 | 188 | 1 | 252 | 758 | 64 | 571 | 0.0 | 691 |
| MS.gene074361.t1 | MTR_8g027385 | 60.990 | 505 | 195 | 1 | 253 | 757 | 52 | 554 | 0.0 | 653 |
| MS.gene074361.t1 | MTR_6g007110 | 64.622 | 489 | 159 | 4 | 213 | 698 | 152 | 629 | 0.0 | 650 |
| MS.gene074361.t1 | MTR_6g007110 | 51.724 | 116 | 45 | 3 | 17 | 122 | 8 | 122 | 3.48e-20 | 95.9 |
| MS.gene074361.t1 | MTR_1g070145 | 26.523 | 509 | 358 | 6 | 245 | 746 | 83 | 582 | 9.53e-43 | 165 |
| MS.gene074361.t1 | MTR_2g023050 | 67.368 | 95 | 30 | 1 | 667 | 760 | 3 | 97 | 1.04e-35 | 132 |
| MS.gene074361.t1 | MTR_6g006830 | 63.265 | 49 | 18 | 0 | 490 | 538 | 19 | 67 | 7.47e-17 | 75.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene074361.t1 | AT1G27500 | 65.809 | 544 | 174 | 4 | 221 | 756 | 114 | 653 | 0.0 | 732 |
| MS.gene074361.t1 | AT1G27500 | 48.148 | 81 | 42 | 0 | 54 | 134 | 25 | 105 | 1.10e-15 | 81.6 |
| MS.gene074361.t1 | AT1G27500 | 65.809 | 544 | 174 | 4 | 221 | 756 | 103 | 642 | 0.0 | 731 |
| MS.gene074361.t1 | AT1G27500 | 48.148 | 81 | 42 | 0 | 54 | 134 | 14 | 94 | 1.23e-15 | 81.6 |
| MS.gene074361.t1 | AT3G27960 | 63.419 | 544 | 188 | 3 | 229 | 761 | 114 | 657 | 0.0 | 710 |
| MS.gene074361.t1 | AT3G27960 | 46.847 | 111 | 41 | 4 | 34 | 143 | 19 | 112 | 3.82e-12 | 70.5 |
| MS.gene074361.t1 | AT3G27960 | 63.419 | 544 | 188 | 3 | 229 | 761 | 114 | 657 | 0.0 | 710 |
| MS.gene074361.t1 | AT3G27960 | 46.847 | 111 | 41 | 4 | 34 | 143 | 19 | 112 | 3.82e-12 | 70.5 |
| MS.gene074361.t1 | AT4G10840 | 57.739 | 575 | 224 | 6 | 195 | 758 | 25 | 591 | 0.0 | 667 |
| MS.gene074361.t1 | AT3G27960 | 63.617 | 481 | 164 | 3 | 229 | 698 | 114 | 594 | 0.0 | 637 |
| MS.gene074361.t1 | AT3G27960 | 43.182 | 132 | 51 | 5 | 13 | 143 | 4 | 112 | 3.29e-12 | 70.5 |
| MS.gene074361.t1 | AT4G10840 | 57.087 | 515 | 202 | 6 | 195 | 698 | 25 | 531 | 0.0 | 590 |
| MS.gene074361.t1 | AT2G31240 | 26.916 | 509 | 359 | 6 | 245 | 746 | 101 | 603 | 7.89e-40 | 156 |
Find 200 sgRNAs with CRISPR-Local
Find 260 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAAGTCCAGAGGCATATTT+TGG | 0.153258 | 3.4:-74801196 | MS.gene074361:CDS |
| CTATATACTCCAAGCGTTTC+AGG | 0.160309 | 3.4:+74800286 | None:intergenic |
| CAGATGCCACTTCGGCTTCT+TGG | 0.257689 | 3.4:+74800923 | None:intergenic |
| TGGTATTGCTCTTAATCAAC+TGG | 0.262779 | 3.4:-74800404 | MS.gene074361:CDS |
| AGAGGAGGTGGAGGTGGAGG+GGG | 0.264395 | 3.4:-74801991 | MS.gene074361:CDS |
| GGAAGAGGAGGTGGAGGTGG+AGG | 0.285387 | 3.4:-74801994 | MS.gene074361:CDS |
| ATGAAACTGTTTGAGAAGTT+TGG | 0.293874 | 3.4:-74801456 | MS.gene074361:CDS |
| TGAGGAAGCAAAGAGTGTTT+TGG | 0.304839 | 3.4:-74800332 | MS.gene074361:CDS |
| AATGAGTCGCGTTGAGAATT+CGG | 0.307148 | 3.4:-74801592 | MS.gene074361:CDS |
| GAGAAGAAATCATCCTTCTT+TGG | 0.307647 | 3.4:-74800424 | MS.gene074361:CDS |
| ACCCCATCATCCTGGAAATT+AGG | 0.314654 | 3.4:+74802179 | None:intergenic |
| AAGGTTGAGTGATTTGTTAA+AGG | 0.318973 | 3.4:-74799637 | MS.gene074361:CDS |
| CGGAATTGCACCATTTGGTT+GGG | 0.324212 | 3.4:-74802043 | MS.gene074361:CDS |
| TCAGCAGCTTCTTCAATAGA+TGG | 0.329233 | 3.4:+74801042 | None:intergenic |
| ATCACAAAACTTCGTGCTAT+TGG | 0.329949 | 3.4:-74800448 | MS.gene074361:CDS |
| TGGATGATTCTCTCCTTTGC+TGG | 0.330223 | 3.4:+74800810 | None:intergenic |
| TGTTGACTTTCCCCGATATC+AGG | 0.331061 | 3.4:+74801318 | None:intergenic |
| AATGGAAGAGGAGGTGGAGG+TGG | 0.332230 | 3.4:-74801997 | MS.gene074361:CDS |
| TGGTGAAACTTGTCGGTATT+TGG | 0.339201 | 3.4:-74801154 | MS.gene074361:CDS |
| CATGCTCTTGCTAAATTTGC+CGG | 0.339227 | 3.4:-74801294 | MS.gene074361:CDS |
| GAGGAGGTGGAGGTGGAGGG+GGG | 0.339394 | 3.4:-74801990 | MS.gene074361:CDS |
| AAACAAACTAGAGGAGTTAA+TGG | 0.352716 | 3.4:-74801657 | MS.gene074361:CDS |
| TGCGAGCGTCGCCGTCAAAA+AGG | 0.357744 | 3.4:+74799571 | None:intergenic |
| CTTGCTTGCTTTAGTAATAT+CGG | 0.357866 | 3.4:+74801537 | None:intergenic |
| GATGAGGGAGCTGGAGATAA+TGG | 0.359970 | 3.4:-74802015 | MS.gene074361:CDS |
| GAATTCAAAGAATTCTCCTT+TGG | 0.361948 | 3.4:-74801628 | MS.gene074361:CDS |
| ACCCCGTTTGTAACAATTCC+CGG | 0.363264 | 3.4:+74802320 | None:intergenic |
| TCGATTGAGATTCCTGATAT+CGG | 0.368583 | 3.4:-74801330 | MS.gene074361:CDS |
| AAGAGGAGGTGGAGGTGGAG+GGG | 0.369474 | 3.4:-74801992 | MS.gene074361:CDS |
| GGAGTATATAGTAATCTTGC+AGG | 0.374241 | 3.4:-74800274 | MS.gene074361:CDS |
| GAACTCCTTGGAGACTTGAT+TGG | 0.374643 | 3.4:+74802233 | None:intergenic |
| AGGGTCGGTCTTTGTACGTT+TGG | 0.381995 | 3.4:-74800782 | MS.gene074361:CDS |
| GTTTGGCTGACTTGTATAAC+AGG | 0.382339 | 3.4:-74800765 | MS.gene074361:CDS |
| TCTAGTGGGGAAACATCTTC+TGG | 0.391241 | 3.4:-74801948 | MS.gene074361:CDS |
| TTGTCAAACCACTGAATTCA+AGG | 0.391923 | 3.4:-74801773 | MS.gene074361:CDS |
| ATTGTTACAAACGGGGTTCA+TGG | 0.395239 | 3.4:-74802314 | MS.gene074361:CDS |
| TGGTAATGGGAAGCCGAGTT+TGG | 0.395609 | 3.4:-74801436 | MS.gene074361:CDS |
| GTGTGCAGCGTTATGCCTTA+AGG | 0.399879 | 3.4:-74800372 | MS.gene074361:CDS |
| TGATTCGGAATTGCACCATT+TGG | 0.399915 | 3.4:-74802048 | MS.gene074361:CDS |
| GGAGATAATGGAAGAGGAGG+TGG | 0.401440 | 3.4:-74802003 | MS.gene074361:CDS |
| TCGCCCTCGAGACAAAGTTT+TGG | 0.402595 | 3.4:-74802095 | MS.gene074361:CDS |
| CGATTGAGATTCCTGATATC+GGG | 0.404768 | 3.4:-74801329 | MS.gene074361:CDS |
| TGGGAAGCCGAGTTTGGAAT+TGG | 0.408392 | 3.4:-74801430 | MS.gene074361:CDS |
| AATTCAAAGAATTCTCCTTT+GGG | 0.410118 | 3.4:-74801627 | MS.gene074361:CDS |
| TGGAGCACGTTGTTAGTATG+AGG | 0.413215 | 3.4:-74799707 | MS.gene074361:CDS |
| TGCCGGGAATTGTTACAAAC+GGG | 0.416439 | 3.4:-74802322 | MS.gene074361:CDS |
| GTCCTAATTTCCAGGATGAT+GGG | 0.417051 | 3.4:-74802181 | MS.gene074361:CDS |
| GCTATTGTTCCTTGCTGACC+AGG | 0.418541 | 3.4:+74800550 | None:intergenic |
| CTCTCCAGAGGAGCTTTAGC+AGG | 0.418882 | 3.4:+74801702 | None:intergenic |
| AGTAATATCGGTGCTCGCTC+TGG | 0.418974 | 3.4:+74801549 | None:intergenic |
| GCAAGAGATCTTATGTCAAC+TGG | 0.419614 | 3.4:-74801519 | MS.gene074361:CDS |
| GGATGATGCAATTCTAACTT+TGG | 0.420399 | 3.4:-74799727 | MS.gene074361:CDS |
| AAGCGTTGGTCCTAATTTCC+AGG | 0.424656 | 3.4:-74802189 | MS.gene074361:CDS |
| TCCTCCTGCTAAAGCTCCTC+TGG | 0.425124 | 3.4:-74801706 | MS.gene074361:CDS |
| CTCAATCGAACGCTCAAGAA+TGG | 0.425249 | 3.4:+74801344 | None:intergenic |
| GGTCCTAATTTCCAGGATGA+TGG | 0.425860 | 3.4:-74802182 | MS.gene074361:CDS |
| TGTTTGAGAAGTTTGGTAAT+GGG | 0.426594 | 3.4:-74801449 | MS.gene074361:CDS |
| CTGTTTGAGAAGTTTGGTAA+TGG | 0.428608 | 3.4:-74801450 | MS.gene074361:CDS |
| CGACAAGTTTCACCAACTCT+TGG | 0.428964 | 3.4:+74801162 | None:intergenic |
| TTTATCTGATGATAAGAAGT+TGG | 0.431998 | 3.4:-74801916 | MS.gene074361:CDS |
| TCAATAATGTTCTACACTGC+TGG | 0.436270 | 3.4:-74801222 | MS.gene074361:CDS |
| TGTGCAGCGTTATGCCTTAA+GGG | 0.442956 | 3.4:-74800371 | MS.gene074361:CDS |
| TAACAGGACAGGGAAGATAA+AGG | 0.443611 | 3.4:-74800749 | MS.gene074361:CDS |
| GTCAATGAATGAGGTTGATC+AGG | 0.448692 | 3.4:-74800617 | MS.gene074361:CDS |
| TAATTCTATAGCTTCCCTTA+AGG | 0.449230 | 3.4:+74800357 | None:intergenic |
| CGCAGCAATATATTGCAGCC+TGG | 0.453642 | 3.4:-74801388 | MS.gene074361:CDS |
| GAAGAGGAGGTGGAGGTGGA+GGG | 0.453852 | 3.4:-74801993 | MS.gene074361:CDS |
| GATAATGGAAGAGGAGGTGG+AGG | 0.458491 | 3.4:-74802000 | MS.gene074361:CDS |
| TGGAGTTAAACTTTCCTTAG+TGG | 0.459596 | 3.4:+74802253 | None:intergenic |
| GCAGGCACGTACGACGCAAT+TGG | 0.460085 | 3.4:-74800256 | MS.gene074361:CDS |
| TCGGAATTGCACCATTTGGT+TGG | 0.461069 | 3.4:-74802044 | MS.gene074361:CDS |
| TATATACTCCAAGCGTTTCA+GGG | 0.461186 | 3.4:+74800287 | None:intergenic |
| TTTAAACAACCTTGTCATCA+AGG | 0.463538 | 3.4:-74799547 | MS.gene074361:CDS |
| GGTCTTATATGTGAAACAAA+GGG | 0.464250 | 3.4:-74801006 | MS.gene074361:CDS |
| GACAAGTTTCACCAACTCTT+GGG | 0.466081 | 3.4:+74801163 | None:intergenic |
| TCCCCACTAGAACTCTCTCC+TGG | 0.466231 | 3.4:+74801960 | None:intergenic |
| GGGGTTATGTATTACATGTT+GGG | 0.468336 | 3.4:-74800508 | MS.gene074361:CDS |
| CAAACCACTGAATTCAAGGT+TGG | 0.471026 | 3.4:-74801769 | MS.gene074361:CDS |
| GGAAGCTATAGAATTATTTG+AGG | 0.473262 | 3.4:-74800350 | MS.gene074361:CDS |
| TGATGATAAGAAGTTGGATA+TGG | 0.475057 | 3.4:-74801910 | MS.gene074361:CDS |
| GTCTCCAAGTTGCATGTGAC+CGG | 0.476378 | 3.4:+74801275 | None:intergenic |
| CTATTGAAGAAGCTGCTGAT+AGG | 0.478081 | 3.4:-74801038 | MS.gene074361:CDS |
| TGGAGACACCTATGCTATGT+TGG | 0.481996 | 3.4:-74801259 | MS.gene074361:CDS |
| CACATAACCAATTCCAAACT+CGG | 0.483673 | 3.4:+74801423 | None:intergenic |
| TGATGAGTCTAGAATTGATT+CGG | 0.484230 | 3.4:-74802063 | MS.gene074361:CDS |
| AGCATGGCAATGGTTGCAAA+TGG | 0.484872 | 3.4:-74800946 | MS.gene074361:CDS |
| CAGCCTCGTCATATCGAGAC+AGG | 0.487359 | 3.4:+74800869 | None:intergenic |
| GGGGAAACATCTTCTGGAAT+GGG | 0.488806 | 3.4:-74801942 | MS.gene074361:CDS |
| GGAGCTGGAGATAATGGAAG+AGG | 0.489221 | 3.4:-74802009 | MS.gene074361:CDS |
| GCTCAACAACCCCATCATCC+TGG | 0.489936 | 3.4:+74802171 | None:intergenic |
| ATTAAGAGCAATACCAAAGA+AGG | 0.492243 | 3.4:+74800411 | None:intergenic |
| CAGCAGCTTCTTCAATAGAT+GGG | 0.492737 | 3.4:+74801043 | None:intergenic |
| ACAAACGGGGTTCATGGCGA+TGG | 0.494013 | 3.4:-74802308 | MS.gene074361:CDS |
| GGTATTGCTCTTAATCAACT+GGG | 0.495438 | 3.4:-74800403 | MS.gene074361:CDS |
| CAAGAGTTGGTGAAACTTGT+CGG | 0.496966 | 3.4:-74801161 | MS.gene074361:CDS |
| CCGGTGATTGAGATTCAATC+TGG | 0.498243 | 3.4:-74801858 | MS.gene074361:CDS |
| CTTATCAGGCCTTGATGACA+AGG | 0.498399 | 3.4:+74799538 | None:intergenic |
| GGAGTTAAACTTTCCTTAGT+GGG | 0.499590 | 3.4:+74802254 | None:intergenic |
| ATGCCGGGAATTGTTACAAA+CGG | 0.499833 | 3.4:-74802323 | MS.gene074361:CDS |
| CCAAGCGTTTCAGGGTGATA+AGG | 0.500209 | 3.4:+74800295 | None:intergenic |
| TGGGGAAACATCTTCTGGAA+TGG | 0.500676 | 3.4:-74801943 | MS.gene074361:CDS |
| TTTGCCGGTCACATGCAACT+TGG | 0.500974 | 3.4:-74801279 | MS.gene074361:CDS |
| AGACCGCTAGCAATCTCCTC+TGG | 0.501919 | 3.4:+74800664 | None:intergenic |
| TGTGGACTCATTGAACTCCT+TGG | 0.504396 | 3.4:+74802221 | None:intergenic |
| GGAATTGCACCATTTGGTTG+GGG | 0.505497 | 3.4:-74802042 | MS.gene074361:CDS |
| CAAACGGGGTTCATGGCGAT+GGG | 0.505611 | 3.4:-74802307 | MS.gene074361:CDS |
| ACAAAGACCGACCCTACTGC+TGG | 0.507046 | 3.4:+74800790 | None:intergenic |
| TTTCTCCCAAAATATGCCTC+TGG | 0.508008 | 3.4:+74801190 | None:intergenic |
| TCAATCGAACGCTCAAGAAT+GGG | 0.508874 | 3.4:+74801345 | None:intergenic |
| GCATCTGTTGACTGCAGCAT+TGG | 0.511790 | 3.4:-74800907 | MS.gene074361:CDS |
| GGAGACACCTATGCTATGTT+GGG | 0.514722 | 3.4:-74801258 | MS.gene074361:CDS |
| CTATTGTTCCTTGCTGACCA+GGG | 0.516960 | 3.4:+74800551 | None:intergenic |
| GCTGACTTGTATAACAGGAC+AGG | 0.521984 | 3.4:-74800760 | MS.gene074361:CDS |
| ATATATGAGAATCCAATGCC+TGG | 0.522080 | 3.4:-74800694 | MS.gene074361:CDS |
| TCAATCTGGTAGTAAAAGTC+CGG | 0.522430 | 3.4:-74801844 | MS.gene074361:CDS |
| TCAATCTGGTAGTAAAAGTC+CGG | 0.522430 | 3.4:-74801877 | MS.gene074361:CDS |
| AAACCACTGAATTCAAGGTT+GGG | 0.523272 | 3.4:-74801768 | MS.gene074361:CDS |
| GGAGAGAATCATCCAGCAGT+AGG | 0.523946 | 3.4:-74800802 | MS.gene074361:CDS |
| ATGGTGGCTGAGATTCAATC+TGG | 0.526317 | 3.4:-74801891 | MS.gene074361:CDS |
| GAATTCGAAGCAGAAAAGTC+AGG | 0.526447 | 3.4:-74799605 | MS.gene074361:CDS |
| TCCTAATTTCCAGGATGATG+GGG | 0.527955 | 3.4:-74802180 | MS.gene074361:CDS |
| AGTGATTTGTTAAAGGAAGC+CGG | 0.532534 | 3.4:-74799630 | MS.gene074361:CDS |
| CCTTATCACCCTGAAACGCT+TGG | 0.533024 | 3.4:-74800295 | MS.gene074361:CDS |
| ATCTCCTCTGGAGTAACTCC+AGG | 0.533475 | 3.4:+74800676 | None:intergenic |
| ACGATCTAGTAGTAAAAGTC+CGG | 0.534457 | 3.4:-74801811 | MS.gene074361:CDS |
| TGTGAACAATTCTCCCACTA+AGG | 0.536500 | 3.4:-74802267 | MS.gene074361:CDS |
| AGCTGCTGATAGGAGGCTCA+TGG | 0.537279 | 3.4:-74801028 | MS.gene074361:CDS |
| AGCAGAGGAGATCTGTCAAA+TGG | 0.537766 | 3.4:-74801097 | MS.gene074361:CDS |
| GGTCAGCAAGGAACAATAGC+AGG | 0.538063 | 3.4:-74800547 | MS.gene074361:CDS |
| CAAGTTACTGCAGAAAGCAT+TGG | 0.539243 | 3.4:-74800590 | MS.gene074361:CDS |
| CTGAGAGAATTAAAGATGCC+GGG | 0.540648 | 3.4:-74802338 | None:intergenic |
| TCTGGAGTAACTCCAGGCAT+TGG | 0.542481 | 3.4:+74800682 | None:intergenic |
| GGGTCTTATATGTGAAACAA+AGG | 0.545385 | 3.4:-74801007 | MS.gene074361:CDS |
| AATAGCAGGAATCGAAGCTC+AGG | 0.546276 | 3.4:-74800533 | MS.gene074361:CDS |
| GAGCCCAACCTTGAATTCAG+TGG | 0.557395 | 3.4:+74801765 | None:intergenic |
| GGAGCACGTTGTTAGTATGA+GGG | 0.558173 | 3.4:-74799706 | MS.gene074361:CDS |
| CATTCATAGAGAAAATAGTT+CGG | 0.559898 | 3.4:-74801067 | MS.gene074361:CDS |
| AGGCCAGGAGAGAGTTCTAG+TGG | 0.560737 | 3.4:-74801963 | MS.gene074361:CDS |
| CTAGATCGTGTCTTAACCAC+CGG | 0.564205 | 3.4:+74801825 | None:intergenic |
| TTTGCAATTTAATGAAGCAG+AGG | 0.566998 | 3.4:-74801112 | MS.gene074361:CDS |
| TCATAAAGCTGCTCGATCGA+AGG | 0.567443 | 3.4:+74802149 | None:intergenic |
| GCTGGAGATAATGGAAGAGG+AGG | 0.567552 | 3.4:-74802006 | MS.gene074361:CDS |
| TGATCATTCTTTCTCTCCAG+AGG | 0.571551 | 3.4:+74801690 | None:intergenic |
| GGAGAAACAGACCCAAGAGT+TGG | 0.572030 | 3.4:-74801174 | MS.gene074361:CDS |
| GCAGCAATATATTGCAGCCT+GGG | 0.572631 | 3.4:-74801387 | MS.gene074361:CDS |
| TTGAAGAAGCTGCTGATAGG+AGG | 0.574364 | 3.4:-74801035 | MS.gene074361:CDS |
| GAGAGAATCATCCAGCAGTA+GGG | 0.578129 | 3.4:-74800801 | MS.gene074361:CDS |
| AATGATGCCCCTGGTCAGCA+AGG | 0.578324 | 3.4:-74800559 | MS.gene074361:CDS |
| GAGATATATAATGATGCCCC+TGG | 0.582463 | 3.4:-74800568 | MS.gene074361:CDS |
| CCAGATTGAATCTCAATCAC+CGG | 0.584520 | 3.4:+74801858 | None:intergenic |
| TATTGTTCCTTGCTGACCAG+GGG | 0.586144 | 3.4:+74800552 | None:intergenic |
| TATCTATGAGTCAATGAATG+AGG | 0.586376 | 3.4:-74800626 | MS.gene074361:CDS |
| GAATTGCACCATTTGGTTGG+GGG | 0.586590 | 3.4:-74802041 | MS.gene074361:CDS |
| ACATTATTGAATTCTCAAGC+TGG | 0.587320 | 3.4:+74801235 | None:intergenic |
| TCCGCACAAAGCTCTTGAGT+TGG | 0.592177 | 3.4:-74801490 | MS.gene074361:CDS |
| GATCCAAAACTTTGTCTCGA+GGG | 0.596211 | 3.4:+74802092 | None:intergenic |
| TAACTCCAATCAAGTCTCCA+AGG | 0.600870 | 3.4:-74802238 | MS.gene074361:CDS |
| GGCCAGGAGAGAGTTCTAGT+GGG | 0.601609 | 3.4:-74801962 | MS.gene074361:CDS |
| AGCAGGAATCGAAGCTCAGG+TGG | 0.603399 | 3.4:-74800530 | MS.gene074361:CDS |
| GTATGAGGGAGGAAAAGCTC+GGG | 0.605021 | 3.4:-74799692 | MS.gene074361:CDS |
| GTATTGCTCTTAATCAACTG+GGG | 0.605860 | 3.4:-74800402 | MS.gene074361:CDS |
| GCACGTACGACGCAATTGGA+AGG | 0.606386 | 3.4:-74800252 | MS.gene074361:intron |
| GCTGCTGATAGGAGGCTCAT+GGG | 0.606688 | 3.4:-74801027 | MS.gene074361:CDS |
| TTGCCATGCTCGCTAAAACA+AGG | 0.608900 | 3.4:+74800959 | None:intergenic |
| AGGAATCGAAGCTCAGGTGG+GGG | 0.609143 | 3.4:-74800527 | MS.gene074361:CDS |
| GCAGGAATCGAAGCTCAGGT+GGG | 0.614855 | 3.4:-74800529 | MS.gene074361:CDS |
| AGATCCAAAACTTTGTCTCG+AGG | 0.615616 | 3.4:+74802091 | None:intergenic |
| CCACAGAGACGTCAAAGCGT+TGG | 0.622035 | 3.4:-74802203 | MS.gene074361:CDS |
| ACGTGGATGATGAAAAGAGA+AGG | 0.622587 | 3.4:-74799656 | MS.gene074361:CDS |
| CTGACTTGTATAACAGGACA+GGG | 0.625190 | 3.4:-74800759 | MS.gene074361:CDS |
| GCAGTCAACAGATGCCACTT+CGG | 0.626708 | 3.4:+74800915 | None:intergenic |
| AAGCTGGCCCAACATAGCAT+AGG | 0.627553 | 3.4:+74801251 | None:intergenic |
| CAGGAATCGAAGCTCAGGTG+GGG | 0.630903 | 3.4:-74800528 | MS.gene074361:CDS |
| TCCAGAGGAGCTTTAGCAGG+AGG | 0.631409 | 3.4:+74801705 | None:intergenic |
| AGCAGCTTCTTCAATAGATG+GGG | 0.635291 | 3.4:+74801044 | None:intergenic |
| AGTATGAGGGAGGAAAAGCT+CGG | 0.639421 | 3.4:-74799693 | MS.gene074361:CDS |
| GATTGAGATTCCTGATATCG+GGG | 0.642295 | 3.4:-74801328 | MS.gene074361:CDS |
| GAATCATCCAGCAGTAGGGT+CGG | 0.642771 | 3.4:-74800797 | MS.gene074361:CDS |
| TTGCCTCACTATATCGACCC+AGG | 0.644043 | 3.4:+74801370 | None:intergenic |
| AAATGGCCAAGAAGCCGAAG+TGG | 0.644324 | 3.4:-74800929 | MS.gene074361:CDS |
| CCAACGCTTTGACGTCTCTG+TGG | 0.647529 | 3.4:+74802203 | None:intergenic |
| ATCTGGTAGTAAAAGTCCGG+TGG | 0.648715 | 3.4:-74801841 | MS.gene074361:CDS |
| ATTGACACTGACTTTCCCAA+AGG | 0.649299 | 3.4:+74801612 | None:intergenic |
| TGATAAGAAGTTGGATATGG+TGG | 0.651245 | 3.4:-74801907 | MS.gene074361:CDS |
| AAACGGGGTTCATGGCGATG+GGG | 0.651726 | 3.4:-74802306 | MS.gene074361:CDS |
| CAGCCTGGGTCGATATAGTG+AGG | 0.655422 | 3.4:-74801373 | MS.gene074361:CDS |
| GCCAACTCAAGAGCTTTGTG+CGG | 0.657377 | 3.4:+74801489 | None:intergenic |
| GTCTTATATGTGAAACAAAG+GGG | 0.658004 | 3.4:-74801005 | MS.gene074361:CDS |
| GCCAGGAGAGAGTTCTAGTG+GGG | 0.664478 | 3.4:-74801961 | MS.gene074361:CDS |
| ATCCCTGTCTCGATATGACG+AGG | 0.670357 | 3.4:-74800872 | MS.gene074361:CDS |
| TCACCAAGATCAAAACCCAA+AGG | 0.673652 | 3.4:-74801735 | MS.gene074361:CDS |
| GCACGTTGTTAGTATGAGGG+AGG | 0.676380 | 3.4:-74799703 | MS.gene074361:CDS |
| CAGGCTGCAATATATTGCTG+CGG | 0.679348 | 3.4:+74801389 | None:intergenic |
| GCCGGGAATTGTTACAAACG+GGG | 0.687272 | 3.4:-74802321 | MS.gene074361:CDS |
| TAAGGCATAACGCTGCACAC+AGG | 0.688937 | 3.4:+74800375 | None:intergenic |
| CCTTTGAGAAAACAAACTAG+AGG | 0.692430 | 3.4:-74801666 | MS.gene074361:CDS |
| AGCCTCGTCATATCGAGACA+GGG | 0.693208 | 3.4:+74800870 | None:intergenic |
| CGGGACAGCGAATCCCGACG+TGG | 0.696066 | 3.4:-74799673 | MS.gene074361:CDS |
| ACTCCAGAGGAGATTGCTAG+CGG | 0.697838 | 3.4:-74800667 | MS.gene074361:CDS |
| AATGCCTGGAGTTACTCCAG+AGG | 0.727468 | 3.4:-74800680 | MS.gene074361:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAAGTTAAATTCATTATTT+TGG | - | chr3.4:74801895-74801914 | MS.gene074361:CDS | 10.0% |
| !!! | AACTTTTACTAATAAAAAGA+AGG | + | chr3.4:74801882-74801901 | None:intergenic | 15.0% |
| ! | AATTCAAAGAATTCTCCTTT+GGG | - | chr3.4:74800238-74800257 | MS.gene074361:intron | 25.0% |
| ! | ACAATACCTTGGTAAATTAA+AGG | + | chr3.4:74801716-74801735 | None:intergenic | 25.0% |
| ! | ATGTGAAATGATAACTGATT+CGG | - | chr3.4:74801807-74801826 | MS.gene074361:CDS | 25.0% |
| ! | CATTCATAGAGAAAATAGTT+CGG | - | chr3.4:74800798-74800817 | MS.gene074361:CDS | 25.0% |
| ! | CTTGGATAATCATAATCTAA+AGG | + | chr3.4:74802059-74802078 | None:intergenic | 25.0% |
| ! | GATTATGATTATCCAAGATA+TGG | - | chr3.4:74802062-74802081 | MS.gene074361:CDS | 25.0% |
| ! | TTTATCTGATGATAAGAAGT+TGG | - | chr3.4:74799949-74799968 | MS.gene074361:intron | 25.0% |
| AAACAAACTAGAGGAGTTAA+TGG | - | chr3.4:74800208-74800227 | MS.gene074361:intron | 30.0% | |
| AAAGATTTCATAGTTCCACA+AGG | + | chr3.4:74802010-74802029 | None:intergenic | 30.0% | |
| ACATTATTGAATTCTCAAGC+TGG | + | chr3.4:74800633-74800652 | None:intergenic | 30.0% | |
| ATGAAACTGTTTGAGAAGTT+TGG | - | chr3.4:74800409-74800428 | MS.gene074361:CDS | 30.0% | |
| ATTAAGAGCAATACCAAAGA+AGG | + | chr3.4:74801457-74801476 | None:intergenic | 30.0% | |
| CTTGCTTGCTTTAGTAATAT+CGG | + | chr3.4:74800331-74800350 | None:intergenic | 30.0% | |
| GAATTCAAAGAATTCTCCTT+TGG | - | chr3.4:74800237-74800256 | MS.gene074361:intron | 30.0% | |
| GGAAGCTATAGAATTATTTG+AGG | - | chr3.4:74801515-74801534 | MS.gene074361:CDS | 30.0% | |
| GTCTTATATGTGAAACAAAG+GGG | - | chr3.4:74800860-74800879 | MS.gene074361:CDS | 30.0% | |
| TAATTCTATAGCTTCCCTTA+AGG | + | chr3.4:74801511-74801530 | None:intergenic | 30.0% | |
| TATCTATGAGTCAATGAATG+AGG | - | chr3.4:74801239-74801258 | MS.gene074361:CDS | 30.0% | |
| TGATGATAAGAAGTTGGATA+TGG | - | chr3.4:74799955-74799974 | MS.gene074361:intron | 30.0% | |
| TGATTATCCAAGATATGGTT+TGG | - | chr3.4:74802067-74802086 | MS.gene074361:CDS | 30.0% | |
| TTTAAACAACCTTGTCATCA+AGG | - | chr3.4:74802318-74802337 | MS.gene074361:CDS | 30.0% | |
| TTTGCAATTTAATGAAGCAG+AGG | - | chr3.4:74800753-74800772 | MS.gene074361:CDS | 30.0% | |
| ! | GGTCTTATATGTGAAACAAA+GGG | - | chr3.4:74800859-74800878 | MS.gene074361:CDS | 30.0% |
| ! | TGATGAGTCTAGAATTGATT+CGG | - | chr3.4:74799802-74799821 | MS.gene074361:intron | 30.0% |
| ! | TGTTTGAGAAGTTTGGTAAT+GGG | - | chr3.4:74800416-74800435 | MS.gene074361:CDS | 30.0% |
| !! | AAAAGATTTGCTAGAAGAAG+CGG | + | chr3.4:74801669-74801688 | None:intergenic | 30.0% |
| !! | AAGGTTGAGTGATTTGTTAA+AGG | - | chr3.4:74802228-74802247 | MS.gene074361:CDS | 30.0% |
| !!! | ACAATTTTTTCTGAGGAAAC+CGG | + | chr3.4:74800076-74800095 | None:intergenic | 30.0% |
| !!! | TGGTTTGACAATTTTTTCTG+AGG | + | chr3.4:74800083-74800102 | None:intergenic | 30.0% |
| AAACCACTGAATTCAAGGTT+GGG | - | chr3.4:74800097-74800116 | MS.gene074361:intron | 35.0% | |
| ACGATCTAGTAGTAAAAGTC+CGG | - | chr3.4:74800054-74800073 | MS.gene074361:intron | 35.0% | |
| AGGGTTTGATCTTCTATTTC+AGG | - | chr3.4:74802113-74802132 | MS.gene074361:CDS | 35.0% | |
| ATAGAAGATCAAACCCTGTA+AGG | + | chr3.4:74802110-74802129 | None:intergenic | 35.0% | |
| ATATATGAGAATCCAATGCC+TGG | - | chr3.4:74801171-74801190 | MS.gene074361:CDS | 35.0% | |
| ATCACAAAACTTCGTGCTAT+TGG | - | chr3.4:74801417-74801436 | MS.gene074361:CDS | 35.0% | |
| CACATAACCAATTCCAAACT+CGG | + | chr3.4:74800445-74800464 | None:intergenic | 35.0% | |
| CAGTTATCATTTCACATGAG+TGG | + | chr3.4:74801804-74801823 | None:intergenic | 35.0% | |
| CTGTTTGAGAAGTTTGGTAA+TGG | - | chr3.4:74800415-74800434 | MS.gene074361:CDS | 35.0% | |
| GAGAAGAAATCATCCTTCTT+TGG | - | chr3.4:74801441-74801460 | MS.gene074361:CDS | 35.0% | |
| GGAGTATATAGTAATCTTGC+AGG | - | chr3.4:74801591-74801610 | MS.gene074361:CDS | 35.0% | |
| GGAGTTAAACTTTCCTTAGT+GGG | + | chr3.4:74799614-74799633 | None:intergenic | 35.0% | |
| GGATGATGCAATTCTAACTT+TGG | - | chr3.4:74802138-74802157 | MS.gene074361:CDS | 35.0% | |
| GGGGTTATGTATTACATGTT+GGG | - | chr3.4:74801357-74801376 | MS.gene074361:CDS | 35.0% | |
| GGTATTGCTCTTAATCAACT+GGG | - | chr3.4:74801462-74801481 | MS.gene074361:CDS | 35.0% | |
| GTATTGCTCTTAATCAACTG+GGG | - | chr3.4:74801463-74801482 | MS.gene074361:CDS | 35.0% | |
| TATATACTCCAAGCGTTTCA+GGG | + | chr3.4:74801581-74801600 | None:intergenic | 35.0% | |
| TCAATAATGTTCTACACTGC+TGG | - | chr3.4:74800643-74800662 | MS.gene074361:CDS | 35.0% | |
| TCAATCTGGTAGTAAAAGTC+CGG | - | chr3.4:74799988-74800007 | MS.gene074361:intron | 35.0% | |
| TCGATTGAGATTCCTGATAT+CGG | - | chr3.4:74800535-74800554 | MS.gene074361:CDS | 35.0% | |
| TGATAAGAAGTTGGATATGG+TGG | - | chr3.4:74799958-74799977 | MS.gene074361:intron | 35.0% | |
| TGGAGTTAAACTTTCCTTAG+TGG | + | chr3.4:74799615-74799634 | None:intergenic | 35.0% | |
| TGGTATTGCTCTTAATCAAC+TGG | - | chr3.4:74801461-74801480 | MS.gene074361:CDS | 35.0% | |
| TTGTCAAACCACTGAATTCA+AGG | - | chr3.4:74800092-74800111 | MS.gene074361:intron | 35.0% | |
| TTTGATCTTCTATTTCAGGC+TGG | - | chr3.4:74802117-74802136 | MS.gene074361:CDS | 35.0% | |
| ! | CCTTTGAGAAAACAAACTAG+AGG | - | chr3.4:74800199-74800218 | MS.gene074361:intron | 35.0% |
| ! | GAAGTTCTTTTCTCCTTACA+GGG | - | chr3.4:74802094-74802113 | MS.gene074361:CDS | 35.0% |
| ! | GGGTCTTATATGTGAAACAA+AGG | - | chr3.4:74800858-74800877 | MS.gene074361:CDS | 35.0% |
| ! | TCACTAGAGAACCTTTTTGA+CGG | - | chr3.4:74802283-74802302 | MS.gene074361:CDS | 35.0% |
| ! | TCAGCACCTTTAATTTACCA+AGG | - | chr3.4:74801707-74801726 | MS.gene074361:CDS | 35.0% |
| ! | TTTTCTGCTTCGAATTCTAC+CGG | + | chr3.4:74802257-74802276 | None:intergenic | 35.0% |
| !! | AGTGATTTGTTAAAGGAAGC+CGG | - | chr3.4:74802235-74802254 | MS.gene074361:CDS | 35.0% |
| !! | TTTCCTTTGGGTTTTGATCT+TGG | + | chr3.4:74800136-74800155 | None:intergenic | 35.0% |
| !!! | AGACAAAGTTTTGGATCTGA+CGG | - | chr3.4:74799779-74799798 | MS.gene074361:intron | 35.0% |
| !!! | AGTGTTTTGGAACATGAGTT+GGG | - | chr3.4:74801546-74801565 | MS.gene074361:CDS | 35.0% |
| !!! | CCTCTAGTTTGTTTTCTCAA+AGG | + | chr3.4:74800202-74800221 | None:intergenic | 35.0% |
| AATGAGTCGCGTTGAGAATT+CGG | - | chr3.4:74800273-74800292 | MS.gene074361:CDS | 40.0% | |
| ACGTGGATGATGAAAAGAGA+AGG | - | chr3.4:74802209-74802228 | MS.gene074361:CDS | 40.0% | |
| AGATCCAAAACTTTGTCTCG+AGG | + | chr3.4:74799777-74799796 | None:intergenic | 40.0% | |
| AGCAGCTTCTTCAATAGATG+GGG | + | chr3.4:74800824-74800843 | None:intergenic | 40.0% | |
| ATACTAGACCCCAAGAAAGA+AGG | - | chr3.4:74801957-74801976 | MS.gene074361:CDS | 40.0% | |
| ATGCCGGGAATTGTTACAAA+CGG | - | chr3.4:74799542-74799561 | MS.gene074361:CDS | 40.0% | |
| ATTGTTACAAACGGGGTTCA+TGG | - | chr3.4:74799551-74799570 | MS.gene074361:CDS | 40.0% | |
| CAAACCACTGAATTCAAGGT+TGG | - | chr3.4:74800096-74800115 | MS.gene074361:intron | 40.0% | |
| CAGCAGCTTCTTCAATAGAT+GGG | + | chr3.4:74800825-74800844 | None:intergenic | 40.0% | |
| CATGCTCTTGCTAAATTTGC+CGG | - | chr3.4:74800571-74800590 | MS.gene074361:CDS | 40.0% | |
| CCAGATTGAATCTCAATCAC+CGG | + | chr3.4:74800010-74800029 | None:intergenic | 40.0% | |
| CGATTGAGATTCCTGATATC+GGG | - | chr3.4:74800536-74800555 | MS.gene074361:CDS | 40.0% | |
| CTATATACTCCAAGCGTTTC+AGG | + | chr3.4:74801582-74801601 | None:intergenic | 40.0% | |
| CTATTGAAGAAGCTGCTGAT+AGG | - | chr3.4:74800827-74800846 | MS.gene074361:CDS | 40.0% | |
| GAATTCGAAGCAGAAAAGTC+AGG | - | chr3.4:74802260-74802279 | MS.gene074361:CDS | 40.0% | |
| GACAAGTTTCACCAACTCTT+GGG | + | chr3.4:74800705-74800724 | None:intergenic | 40.0% | |
| GAGATATATAATGATGCCCC+TGG | - | chr3.4:74801297-74801316 | MS.gene074361:CDS | 40.0% | |
| GATCCAAAACTTTGTCTCGA+GGG | + | chr3.4:74799776-74799795 | None:intergenic | 40.0% | |
| GATTGAGATTCCTGATATCG+GGG | - | chr3.4:74800537-74800556 | MS.gene074361:CDS | 40.0% | |
| GCAAGAGATCTTATGTCAAC+TGG | - | chr3.4:74800346-74800365 | MS.gene074361:CDS | 40.0% | |
| GGGGGTTATGTATTACATGT+TGG | - | chr3.4:74801356-74801375 | MS.gene074361:CDS | 40.0% | |
| GTCCTAATTTCCAGGATGAT+GGG | - | chr3.4:74799684-74799703 | MS.gene074361:CDS | 40.0% | |
| TAACAGGACAGGGAAGATAA+AGG | - | chr3.4:74801116-74801135 | MS.gene074361:CDS | 40.0% | |
| TAACTCCAATCAAGTCTCCA+AGG | - | chr3.4:74799627-74799646 | MS.gene074361:CDS | 40.0% | |
| TACTAGACCCCAAGAAAGAA+GGG | - | chr3.4:74801958-74801977 | MS.gene074361:CDS | 40.0% | |
| TCAATCGAACGCTCAAGAAT+GGG | + | chr3.4:74800523-74800542 | None:intergenic | 40.0% | |
| TCACCAAGATCAAAACCCAA+AGG | - | chr3.4:74800130-74800149 | MS.gene074361:intron | 40.0% | |
| TCAGCAGCTTCTTCAATAGA+TGG | + | chr3.4:74800826-74800845 | None:intergenic | 40.0% | |
| TCCTAATTTCCAGGATGATG+GGG | - | chr3.4:74799685-74799704 | MS.gene074361:CDS | 40.0% | |
| TGATCATTCTTTCTCTCCAG+AGG | + | chr3.4:74800178-74800197 | None:intergenic | 40.0% | |
| TGGTGAAACTTGTCGGTATT+TGG | - | chr3.4:74800711-74800730 | MS.gene074361:CDS | 40.0% | |
| TGTGAACAATTCTCCCACTA+AGG | - | chr3.4:74799598-74799617 | MS.gene074361:CDS | 40.0% | |
| TTCGACACCAAACCATATCT+TGG | + | chr3.4:74802077-74802096 | None:intergenic | 40.0% | |
| TTCTTGGGGTCTAGTATAAG+TGG | + | chr3.4:74801954-74801973 | None:intergenic | 40.0% | |
| TTTCTCCCAAAATATGCCTC+TGG | + | chr3.4:74800678-74800697 | None:intergenic | 40.0% | |
| ! | CAAGTTACTGCAGAAAGCAT+TGG | - | chr3.4:74801275-74801294 | MS.gene074361:CDS | 40.0% |
| ! | CGAAGTTCTTTTCTCCTTAC+AGG | - | chr3.4:74802093-74802112 | MS.gene074361:CDS | 40.0% |
| ! | CTGACTTGTATAACAGGACA+GGG | - | chr3.4:74801106-74801125 | MS.gene074361:CDS | 40.0% |
| ! | GGAGTTTGATTCACCTTTTG+AGG | - | chr3.4:74801984-74802003 | MS.gene074361:CDS | 40.0% |
| ! | GTCAATGAATGAGGTTGATC+AGG | - | chr3.4:74801248-74801267 | MS.gene074361:CDS | 40.0% |
| ! | TCTCTTTTCATCATCCACGT+CGG | + | chr3.4:74802209-74802228 | None:intergenic | 40.0% |
| ! | TGATTCGGAATTGCACCATT+TGG | - | chr3.4:74799817-74799836 | MS.gene074361:intron | 40.0% |
| !! | ATTGACACTGACTTTCCCAA+AGG | + | chr3.4:74800256-74800275 | None:intergenic | 40.0% |
| !! | CAAGAGTTGGTGAAACTTGT+CGG | - | chr3.4:74800704-74800723 | MS.gene074361:CDS | 40.0% |
| !! | GAAGTCCAGAGGCATATTTT+GGG | - | chr3.4:74800670-74800689 | MS.gene074361:CDS | 40.0% |
| !! | GATAACTGATTCGGCATTCA+TGG | - | chr3.4:74801816-74801835 | MS.gene074361:CDS | 40.0% |
| !! | GTTTGGCTGACTTGTATAAC+AGG | - | chr3.4:74801100-74801119 | MS.gene074361:CDS | 40.0% |
| !! | TGAAGTCCAGAGGCATATTT+TGG | - | chr3.4:74800669-74800688 | MS.gene074361:CDS | 40.0% |
| !!! | GAGTGTTTTGGAACATGAGT+TGG | - | chr3.4:74801545-74801564 | MS.gene074361:CDS | 40.0% |
| !!! | GTGTTTTGGAACATGAGTTG+GGG | - | chr3.4:74801547-74801566 | MS.gene074361:CDS | 40.0% |
| !!! | TGAGGAAGCAAAGAGTGTTT+TGG | - | chr3.4:74801533-74801552 | MS.gene074361:CDS | 40.0% |
| AATAGCAGGAATCGAAGCTC+AGG | - | chr3.4:74801332-74801351 | MS.gene074361:CDS | 45.0% | |
| ACCCCATCATCCTGGAAATT+AGG | + | chr3.4:74799689-74799708 | None:intergenic | 45.0% | |
| ACCCCGTTTGTAACAATTCC+CGG | + | chr3.4:74799548-74799567 | None:intergenic | 45.0% | |
| AGAAGAAGCGGAAACACAGA+AGG | + | chr3.4:74801657-74801676 | None:intergenic | 45.0% | |
| AGCAGAGGAGATCTGTCAAA+TGG | - | chr3.4:74800768-74800787 | MS.gene074361:CDS | 45.0% | |
| AGCATGGCAATGGTTGCAAA+TGG | - | chr3.4:74800919-74800938 | MS.gene074361:CDS | 45.0% | |
| AGTATGAGGGAGGAAAAGCT+CGG | - | chr3.4:74802172-74802191 | MS.gene074361:CDS | 45.0% | |
| ATCTGGTAGTAAAAGTCCGG+TGG | - | chr3.4:74799991-74800010 | MS.gene074361:intron | 45.0% | |
| ATGGTGGCTGAGATTCAATC+TGG | - | chr3.4:74799974-74799993 | MS.gene074361:intron | 45.0% | |
| CAGGCTGCAATATATTGCTG+CGG | + | chr3.4:74800479-74800498 | None:intergenic | 45.0% | |
| CCGGTGATTGAGATTCAATC+TGG | - | chr3.4:74800007-74800026 | MS.gene074361:intron | 45.0% | |
| CGACAAGTTTCACCAACTCT+TGG | + | chr3.4:74800706-74800725 | None:intergenic | 45.0% | |
| CGGAATTGCACCATTTGGTT+GGG | - | chr3.4:74799822-74799841 | MS.gene074361:intron | 45.0% | |
| CTAGATCGTGTCTTAACCAC+CGG | + | chr3.4:74800043-74800062 | None:intergenic | 45.0% | |
| CTATTGTTCCTTGCTGACCA+GGG | + | chr3.4:74801317-74801336 | None:intergenic | 45.0% | |
| CTCAATCGAACGCTCAAGAA+TGG | + | chr3.4:74800524-74800543 | None:intergenic | 45.0% | |
| GAACTCCTTGGAGACTTGAT+TGG | + | chr3.4:74799635-74799654 | None:intergenic | 45.0% | |
| GAAGAAGCGGAAACACAGAA+GGG | + | chr3.4:74801656-74801675 | None:intergenic | 45.0% | |
| GAATTGCACCATTTGGTTGG+GGG | - | chr3.4:74799824-74799843 | MS.gene074361:intron | 45.0% | |
| GAGAGAATCATCCAGCAGTA+GGG | - | chr3.4:74801064-74801083 | MS.gene074361:CDS | 45.0% | |
| GCAGCAATATATTGCAGCCT+GGG | - | chr3.4:74800478-74800497 | MS.gene074361:CDS | 45.0% | |
| GGAATTGCACCATTTGGTTG+GGG | - | chr3.4:74799823-74799842 | MS.gene074361:intron | 45.0% | |
| GGAGACACCTATGCTATGTT+GGG | - | chr3.4:74800607-74800626 | MS.gene074361:CDS | 45.0% | |
| GGAGCACGTTGTTAGTATGA+GGG | - | chr3.4:74802159-74802178 | MS.gene074361:CDS | 45.0% | |
| GGTCCTAATTTCCAGGATGA+TGG | - | chr3.4:74799683-74799702 | MS.gene074361:CDS | 45.0% | |
| TAGTTCCACAAGGCCTCAAA+AGG | + | chr3.4:74802000-74802019 | None:intergenic | 45.0% | |
| TATTGTTCCTTGCTGACCAG+GGG | + | chr3.4:74801316-74801335 | None:intergenic | 45.0% | |
| TCATAAAGCTGCTCGATCGA+AGG | + | chr3.4:74799719-74799738 | None:intergenic | 45.0% | |
| TCGGAATTGCACCATTTGGT+TGG | - | chr3.4:74799821-74799840 | MS.gene074361:intron | 45.0% | |
| TCTAGTGGGGAAACATCTTC+TGG | - | chr3.4:74799917-74799936 | MS.gene074361:intron | 45.0% | |
| TGCCGGGAATTGTTACAAAC+GGG | - | chr3.4:74799543-74799562 | MS.gene074361:CDS | 45.0% | |
| TGGAGACACCTATGCTATGT+TGG | - | chr3.4:74800606-74800625 | MS.gene074361:CDS | 45.0% | |
| TGGAGCACGTTGTTAGTATG+AGG | - | chr3.4:74802158-74802177 | MS.gene074361:CDS | 45.0% | |
| TGGATGATTCTCTCCTTTGC+TGG | + | chr3.4:74801058-74801077 | None:intergenic | 45.0% | |
| TGGGGTCTAGTATAAGTGGT+TGG | + | chr3.4:74801950-74801969 | None:intergenic | 45.0% | |
| TGTGCAGCGTTATGCCTTAA+GGG | - | chr3.4:74801494-74801513 | MS.gene074361:CDS | 45.0% | |
| TGTGGACTCATTGAACTCCT+TGG | + | chr3.4:74799647-74799666 | None:intergenic | 45.0% | |
| TTGAAGAAGCTGCTGATAGG+AGG | - | chr3.4:74800830-74800849 | MS.gene074361:CDS | 45.0% | |
| TTGCCATGCTCGCTAAAACA+AGG | + | chr3.4:74800909-74800928 | None:intergenic | 45.0% | |
| ! | CTCTTTTCATCATCCACGTC+GGG | + | chr3.4:74802208-74802227 | None:intergenic | 45.0% |
| ! | TGGGGAAACATCTTCTGGAA+TGG | - | chr3.4:74799922-74799941 | MS.gene074361:intron | 45.0% |
| !! | AAGCGTTGGTCCTAATTTCC+AGG | - | chr3.4:74799676-74799695 | MS.gene074361:CDS | 45.0% |
| !! | ACCAAGGTATTGTGTGAAGC+AGG | - | chr3.4:74801723-74801742 | MS.gene074361:CDS | 45.0% |
| !! | AGCAGGAGGACTTTTTCCTT+TGG | + | chr3.4:74800149-74800168 | None:intergenic | 45.0% |
| !! | GCAGGAGGACTTTTTCCTTT+GGG | + | chr3.4:74800148-74800167 | None:intergenic | 45.0% |
| !! | GCAGTTTTCAAGACCAGCAA+AGG | - | chr3.4:74801042-74801061 | MS.gene074361:CDS | 45.0% |
| !! | GCTGACTTGTATAACAGGAC+AGG | - | chr3.4:74801105-74801124 | MS.gene074361:CDS | 45.0% |
| !! | GGGGAAACATCTTCTGGAAT+GGG | - | chr3.4:74799923-74799942 | MS.gene074361:intron | 45.0% |
| !! | TGTTGACTTTCCCCGATATC+AGG | + | chr3.4:74800550-74800569 | None:intergenic | 45.0% |
| !!! | ACACCTTGTTTTAGCGAGCA+TGG | - | chr3.4:74800903-74800922 | MS.gene074361:CDS | 45.0% |
| !!! | ATTCACCTTTTGAGGCCTTG+TGG | - | chr3.4:74801992-74802011 | MS.gene074361:CDS | 45.0% |
| !!! | TGTTTTAGCGAGCATGGCAA+TGG | - | chr3.4:74800909-74800928 | MS.gene074361:CDS | 45.0% |
| AAATGGCCAAGAAGCCGAAG+TGG | - | chr3.4:74800936-74800955 | MS.gene074361:CDS | 50.0% | |
| AACTCCCCACCCTTCTTTCT+TGG | + | chr3.4:74801970-74801989 | None:intergenic | 50.0% | |
| AAGCTGGCCCAACATAGCAT+AGG | + | chr3.4:74800617-74800636 | None:intergenic | 50.0% | |
| AATGCCTGGAGTTACTCCAG+AGG | - | chr3.4:74801185-74801204 | MS.gene074361:CDS | 50.0% | |
| ACTCCAGAGGAGATTGCTAG+CGG | - | chr3.4:74801198-74801217 | MS.gene074361:CDS | 50.0% | |
| ACTCCCCACCCTTCTTTCTT+GGG | + | chr3.4:74801969-74801988 | None:intergenic | 50.0% | |
| AGACCCCAAGAAAGAAGGGT+GGG | - | chr3.4:74801962-74801981 | MS.gene074361:CDS | 50.0% | |
| AGCCTCGTCATATCGAGACA+GGG | + | chr3.4:74800998-74801017 | None:intergenic | 50.0% | |
| AGGGTCGGTCTTTGTACGTT+TGG | - | chr3.4:74801083-74801102 | MS.gene074361:CDS | 50.0% | |
| ATCCCTGTCTCGATATGACG+AGG | - | chr3.4:74800993-74801012 | MS.gene074361:CDS | 50.0% | |
| ATGAGTGGCATGACTCGATC+AGG | + | chr3.4:74801789-74801808 | None:intergenic | 50.0% | |
| CCAAGCGTTTCAGGGTGATA+AGG | + | chr3.4:74801573-74801592 | None:intergenic | 50.0% | |
| CCTTATCACCCTGAAACGCT+TGG | - | chr3.4:74801570-74801589 | MS.gene074361:CDS | 50.0% | |
| CGCAGCAATATATTGCAGCC+TGG | - | chr3.4:74800477-74800496 | MS.gene074361:CDS | 50.0% | |
| GAATCATCCAGCAGTAGGGT+CGG | - | chr3.4:74801068-74801087 | MS.gene074361:CDS | 50.0% | |
| GAGCCCAACCTTGAATTCAG+TGG | + | chr3.4:74800103-74800122 | None:intergenic | 50.0% | |
| GATGAGGGAGCTGGAGATAA+TGG | - | chr3.4:74799850-74799869 | MS.gene074361:intron | 50.0% | |
| GCACGTTGTTAGTATGAGGG+AGG | - | chr3.4:74802162-74802181 | MS.gene074361:CDS | 50.0% | |
| GCCGGGAATTGTTACAAACG+GGG | - | chr3.4:74799544-74799563 | MS.gene074361:CDS | 50.0% | |
| GCCTGCTTCACACAATACCT+TGG | + | chr3.4:74801727-74801746 | None:intergenic | 50.0% | |
| GCTATTGTTCCTTGCTGACC+AGG | + | chr3.4:74801318-74801337 | None:intergenic | 50.0% | |
| GGAGAAACAGACCCAAGAGT+TGG | - | chr3.4:74800691-74800710 | MS.gene074361:CDS | 50.0% | |
| GGAGAGAATCATCCAGCAGT+AGG | - | chr3.4:74801063-74801082 | MS.gene074361:CDS | 50.0% | |
| GGTCAGCAAGGAACAATAGC+AGG | - | chr3.4:74801318-74801337 | MS.gene074361:CDS | 50.0% | |
| GTATGAGGGAGGAAAAGCTC+GGG | - | chr3.4:74802173-74802192 | MS.gene074361:CDS | 50.0% | |
| GTCTCCAAGTTGCATGTGAC+CGG | + | chr3.4:74800593-74800612 | None:intergenic | 50.0% | |
| GTGTGCAGCGTTATGCCTTA+AGG | - | chr3.4:74801493-74801512 | MS.gene074361:CDS | 50.0% | |
| TAAGGCATAACGCTGCACAC+AGG | + | chr3.4:74801493-74801512 | None:intergenic | 50.0% | |
| TAGACCCCAAGAAAGAAGGG+TGG | - | chr3.4:74801961-74801980 | MS.gene074361:CDS | 50.0% | |
| TCCGCACAAAGCTCTTGAGT+TGG | - | chr3.4:74800375-74800394 | MS.gene074361:CDS | 50.0% | |
| TTGCCTCACTATATCGACCC+AGG | + | chr3.4:74800498-74800517 | None:intergenic | 50.0% | |
| TTTGCCGGTCACATGCAACT+TGG | - | chr3.4:74800586-74800605 | MS.gene074361:CDS | 50.0% | |
| ! | AGTAATATCGGTGCTCGCTC+TGG | + | chr3.4:74800319-74800338 | None:intergenic | 50.0% |
| ! | GCAGTCAACAGATGCCACTT+CGG | + | chr3.4:74800953-74800972 | None:intergenic | 50.0% |
| ! | GCATCTGTTGACTGCAGCAT+TGG | - | chr3.4:74800958-74800977 | MS.gene074361:CDS | 50.0% |
| ! | GCCAACTCAAGAGCTTTGTG+CGG | + | chr3.4:74800379-74800398 | None:intergenic | 50.0% |
| ! | TCGCCCTCGAGACAAAGTTT+TGG | - | chr3.4:74799770-74799789 | MS.gene074361:intron | 50.0% |
| ! | TCTGGAGTAACTCCAGGCAT+TGG | + | chr3.4:74801186-74801205 | None:intergenic | 50.0% |
| ! | TGGGAAGCCGAGTTTGGAAT+TGG | - | chr3.4:74800435-74800454 | MS.gene074361:CDS | 50.0% |
| !! | ATCTCCTCTGGAGTAACTCC+AGG | + | chr3.4:74801192-74801211 | None:intergenic | 50.0% |
| !! | GATAATGGAAGAGGAGGTGG+AGG | - | chr3.4:74799865-74799884 | MS.gene074361:intron | 50.0% |
| !! | GCTGGAGATAATGGAAGAGG+AGG | - | chr3.4:74799859-74799878 | MS.gene074361:intron | 50.0% |
| !! | GGAGATAATGGAAGAGGAGG+TGG | - | chr3.4:74799862-74799881 | MS.gene074361:intron | 50.0% |
| !! | GGAGCTGGAGATAATGGAAG+AGG | - | chr3.4:74799856-74799875 | MS.gene074361:intron | 50.0% |
| !! | TGGTAATGGGAAGCCGAGTT+TGG | - | chr3.4:74800429-74800448 | MS.gene074361:CDS | 50.0% |
| !!! | CTGCTGGTTTTGAAGTCCAG+AGG | - | chr3.4:74800659-74800678 | MS.gene074361:CDS | 50.0% |
| AAACGGGGTTCATGGCGATG+GGG | - | chr3.4:74799559-74799578 | MS.gene074361:CDS | 55.0% | |
| AATGATGCCCCTGGTCAGCA+AGG | - | chr3.4:74801306-74801325 | MS.gene074361:CDS | 55.0% | |
| AATGGAAGAGGAGGTGGAGG+TGG | - | chr3.4:74799868-74799887 | MS.gene074361:intron | 55.0% | |
| ACAAACGGGGTTCATGGCGA+TGG | - | chr3.4:74799557-74799576 | MS.gene074361:CDS | 55.0% | |
| ACAAAGACCGACCCTACTGC+TGG | + | chr3.4:74801078-74801097 | None:intergenic | 55.0% | |
| AGACCGCTAGCAATCTCCTC+TGG | + | chr3.4:74801204-74801223 | None:intergenic | 55.0% | |
| AGCAGGAATCGAAGCTCAGG+TGG | - | chr3.4:74801335-74801354 | MS.gene074361:CDS | 55.0% | |
| AGCTGCTGATAGGAGGCTCA+TGG | - | chr3.4:74800837-74800856 | MS.gene074361:CDS | 55.0% | |
| AGGAATCGAAGCTCAGGTGG+GGG | - | chr3.4:74801338-74801357 | MS.gene074361:CDS | 55.0% | |
| ATTTGGTTGGGGGACGGATG+AGG | - | chr3.4:74799834-74799853 | MS.gene074361:intron | 55.0% | |
| CAAACGGGGTTCATGGCGAT+GGG | - | chr3.4:74799558-74799577 | MS.gene074361:CDS | 55.0% | |
| CAGCCTCGTCATATCGAGAC+AGG | + | chr3.4:74800999-74801018 | None:intergenic | 55.0% | |
| CAGCCTGGGTCGATATAGTG+AGG | - | chr3.4:74800492-74800511 | MS.gene074361:CDS | 55.0% | |
| CAGGAATCGAAGCTCAGGTG+GGG | - | chr3.4:74801337-74801356 | MS.gene074361:CDS | 55.0% | |
| CCAACGCTTTGACGTCTCTG+TGG | + | chr3.4:74799665-74799684 | None:intergenic | 55.0% | |
| CCACAGAGACGTCAAAGCGT+TGG | - | chr3.4:74799662-74799681 | MS.gene074361:CDS | 55.0% | |
| CTCCCCACCCTTCTTTCTTG+GGG | + | chr3.4:74801968-74801987 | None:intergenic | 55.0% | |
| GACCCCAAGAAAGAAGGGTG+GGG | - | chr3.4:74801963-74801982 | MS.gene074361:CDS | 55.0% | |
| GCACGTACGACGCAATTGGA+AGG | - | chr3.4:74801613-74801632 | MS.gene074361:CDS | 55.0% | |
| GCAGGAATCGAAGCTCAGGT+GGG | - | chr3.4:74801336-74801355 | MS.gene074361:CDS | 55.0% | |
| GCTCAACAACCCCATCATCC+TGG | + | chr3.4:74799697-74799716 | None:intergenic | 55.0% | |
| GCTGCTGATAGGAGGCTCAT+GGG | - | chr3.4:74800838-74800857 | MS.gene074361:CDS | 55.0% | |
| TCATCCGTCCCCCAACCAAA+TGG | + | chr3.4:74799835-74799854 | None:intergenic | 55.0% | |
| TCCCCACTAGAACTCTCTCC+TGG | + | chr3.4:74799908-74799927 | None:intergenic | 55.0% | |
| TCCTCCTGCTAAAGCTCCTC+TGG | - | chr3.4:74800159-74800178 | MS.gene074361:intron | 55.0% | |
| TGCACCATTTGGTTGGGGGA+CGG | - | chr3.4:74799828-74799847 | MS.gene074361:intron | 55.0% | |
| TTTGGTTGGGGGACGGATGA+GGG | - | chr3.4:74799835-74799854 | MS.gene074361:intron | 55.0% | |
| ! | AGGCCAGGAGAGAGTTCTAG+TGG | - | chr3.4:74799902-74799921 | MS.gene074361:intron | 55.0% |
| ! | CAGATGCCACTTCGGCTTCT+TGG | + | chr3.4:74800945-74800964 | None:intergenic | 55.0% |
| ! | CTCTCCAGAGGAGCTTTAGC+AGG | + | chr3.4:74800166-74800185 | None:intergenic | 55.0% |
| ! | GCCAGGAGAGAGTTCTAGTG+GGG | - | chr3.4:74799904-74799923 | MS.gene074361:intron | 55.0% |
| ! | GGCCAGGAGAGAGTTCTAGT+GGG | - | chr3.4:74799903-74799922 | MS.gene074361:intron | 55.0% |
| ! | TCCAGAGGAGCTTTAGCAGG+AGG | + | chr3.4:74800163-74800182 | None:intergenic | 55.0% |
| AAGAGGAGGTGGAGGTGGAG+GGG | - | chr3.4:74799873-74799892 | MS.gene074361:intron | 60.0% | |
| GAAGAGGAGGTGGAGGTGGA+GGG | - | chr3.4:74799872-74799891 | MS.gene074361:intron | 60.0% | |
| GCAGGCACGTACGACGCAAT+TGG | - | chr3.4:74801609-74801628 | MS.gene074361:CDS | 60.0% | |
| ! | TGCGAGCGTCGCCGTCAAAA+AGG | + | chr3.4:74802297-74802316 | None:intergenic | 60.0% |
| AGAGGAGGTGGAGGTGGAGG+GGG | - | chr3.4:74799874-74799893 | MS.gene074361:intron | 65.0% | |
| GGAAGAGGAGGTGGAGGTGG+AGG | - | chr3.4:74799871-74799890 | MS.gene074361:intron | 65.0% | |
| TGGAGGTGGAGGGGGGAAGA+AGG | - | chr3.4:74799882-74799901 | MS.gene074361:intron | 65.0% | |
| CGGGACAGCGAATCCCGACG+TGG | - | chr3.4:74802192-74802211 | MS.gene074361:CDS | 70.0% | |
| GAGGAGGTGGAGGTGGAGGG+GGG | - | chr3.4:74799875-74799894 | MS.gene074361:intron | 70.0% | |
| GTGGAGGGGGGAAGAAGGCC+AGG | - | chr3.4:74799887-74799906 | MS.gene074361:intron | 70.0% | |
| TGGGGGACGGATGAGGGAGC+TGG | - | chr3.4:74799841-74799860 | MS.gene074361:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 74799542 | 74802345 | 74799542 | ID=MS.gene074361 |
| chr3.4 | mRNA | 74799542 | 74802345 | 74799542 | ID=MS.gene074361.t1;Parent=MS.gene074361 |
| chr3.4 | exon | 74800253 | 74802345 | 74800253 | ID=MS.gene074361.t1.exon1;Parent=MS.gene074361.t1 |
| chr3.4 | CDS | 74800253 | 74802345 | 74800253 | ID=cds.MS.gene074361.t1;Parent=MS.gene074361.t1 |
| chr3.4 | exon | 74799542 | 74799752 | 74799542 | ID=MS.gene074361.t1.exon2;Parent=MS.gene074361.t1 |
| chr3.4 | CDS | 74799542 | 74799752 | 74799542 | ID=cds.MS.gene074361.t1;Parent=MS.gene074361.t1 |
| Gene Sequence |
| Protein sequence |
